Multiple sequence alignment - TraesCS4D01G258300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G258300 chr4D 100.000 6336 0 0 1 6336 428529637 428523302 0.000000e+00 11701.0
1 TraesCS4D01G258300 chr4B 94.187 3664 157 36 779 4399 525171375 525175025 0.000000e+00 5535.0
2 TraesCS4D01G258300 chr4B 94.478 1974 67 14 4400 6336 525175112 525177080 0.000000e+00 3003.0
3 TraesCS4D01G258300 chr4A 93.586 1715 68 18 4400 6090 37991216 37992912 0.000000e+00 2519.0
4 TraesCS4D01G258300 chr4A 97.305 1336 32 3 2925 4258 37986322 37987655 0.000000e+00 2265.0
5 TraesCS4D01G258300 chr4A 93.824 1344 66 10 1595 2925 37984867 37986206 0.000000e+00 2006.0
6 TraesCS4D01G258300 chr4A 89.213 890 55 21 746 1604 37978260 37979139 0.000000e+00 1074.0
7 TraesCS4D01G258300 chr4A 91.765 340 13 1 6012 6336 37992892 37993231 5.790000e-125 459.0
8 TraesCS4D01G258300 chr4A 78.297 599 102 20 4583 5164 17758059 17757472 1.680000e-95 361.0
9 TraesCS4D01G258300 chr4A 81.390 446 51 16 211 631 37908244 37908682 1.020000e-87 335.0
10 TraesCS4D01G258300 chr4A 93.103 145 6 2 4255 4399 37989842 37989982 6.440000e-50 209.0
11 TraesCS4D01G258300 chr5A 78.261 598 103 20 4583 5164 4009727 4010313 6.040000e-95 359.0
12 TraesCS4D01G258300 chr5B 77.722 597 106 21 4529 5111 48419510 48420093 2.190000e-89 340.0
13 TraesCS4D01G258300 chr3A 78.374 578 87 15 44 592 60248368 60247800 2.190000e-89 340.0
14 TraesCS4D01G258300 chr7A 78.713 404 69 12 43 446 148537704 148537318 2.930000e-63 254.0
15 TraesCS4D01G258300 chr7B 80.277 289 54 3 155 442 76043501 76043215 1.380000e-51 215.0
16 TraesCS4D01G258300 chr7B 88.525 122 13 1 2703 2823 540063318 540063197 5.120000e-31 147.0
17 TraesCS4D01G258300 chr7D 88.281 128 14 1 2703 2829 485106579 485106452 1.100000e-32 152.0
18 TraesCS4D01G258300 chr7D 87.500 128 15 1 2697 2823 199607011 199607138 5.120000e-31 147.0
19 TraesCS4D01G258300 chr7D 88.525 122 13 1 2703 2823 511228131 511228010 5.120000e-31 147.0
20 TraesCS4D01G258300 chr6D 87.273 110 14 0 2715 2824 30901456 30901347 6.670000e-25 126.0
21 TraesCS4D01G258300 chr6D 87.156 109 14 0 2713 2821 42152578 42152470 2.400000e-24 124.0
22 TraesCS4D01G258300 chr2D 85.000 120 16 2 2703 2821 36551585 36551467 3.100000e-23 121.0
23 TraesCS4D01G258300 chrUn 88.889 72 6 2 345 415 176185814 176185744 3.150000e-13 87.9
24 TraesCS4D01G258300 chr2A 88.889 72 6 2 345 415 4568543 4568613 3.150000e-13 87.9
25 TraesCS4D01G258300 chr1D 88.889 72 6 2 345 415 102681874 102681804 3.150000e-13 87.9
26 TraesCS4D01G258300 chr6B 92.857 56 4 0 345 400 211803198 211803253 1.460000e-11 82.4
27 TraesCS4D01G258300 chr2B 97.222 36 1 0 1726 1761 549724330 549724365 1.910000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G258300 chr4D 428523302 428529637 6335 True 11701.0 11701 100.0000 1 6336 1 chr4D.!!$R1 6335
1 TraesCS4D01G258300 chr4B 525171375 525177080 5705 False 4269.0 5535 94.3325 779 6336 2 chr4B.!!$F1 5557
2 TraesCS4D01G258300 chr4A 37984867 37993231 8364 False 1491.6 2519 93.9166 1595 6336 5 chr4A.!!$F3 4741
3 TraesCS4D01G258300 chr4A 37978260 37979139 879 False 1074.0 1074 89.2130 746 1604 1 chr4A.!!$F2 858
4 TraesCS4D01G258300 chr4A 17757472 17758059 587 True 361.0 361 78.2970 4583 5164 1 chr4A.!!$R1 581
5 TraesCS4D01G258300 chr5A 4009727 4010313 586 False 359.0 359 78.2610 4583 5164 1 chr5A.!!$F1 581
6 TraesCS4D01G258300 chr5B 48419510 48420093 583 False 340.0 340 77.7220 4529 5111 1 chr5B.!!$F1 582
7 TraesCS4D01G258300 chr3A 60247800 60248368 568 True 340.0 340 78.3740 44 592 1 chr3A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.035739 GGGTACTTCTTTCGTGGCCA 59.964 55.000 0.00 0.0 0.00 5.36 F
418 420 0.040157 CCTTGACCATGCAACACACG 60.040 55.000 0.00 0.0 0.00 4.49 F
607 633 0.169672 CATACCAAGCACAGCACAGC 59.830 55.000 0.00 0.0 0.00 4.40 F
642 668 0.323725 ACGGCCCTGAATTCTTGCAT 60.324 50.000 7.05 0.0 0.00 3.96 F
737 763 0.326264 GCGGGGGATGCTATGAATCT 59.674 55.000 0.00 0.0 0.00 2.40 F
901 934 0.401738 TTGAGACTGAAAGGGGCTGG 59.598 55.000 0.00 0.0 39.30 4.85 F
1482 1552 0.622665 CTGCCCTCTGGGTTCAAGAT 59.377 55.000 4.42 0.0 46.51 2.40 F
1483 1553 1.005215 CTGCCCTCTGGGTTCAAGATT 59.995 52.381 4.42 0.0 46.51 2.40 F
1805 1892 1.210204 ACATCTGGTGGAGGCCATGT 61.210 55.000 5.01 0.0 37.96 3.21 F
3837 4058 0.912486 GGACCAGCCTATCCAGTTGT 59.088 55.000 0.00 0.0 34.87 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1145 1203 0.883814 GGGATCGATGAAGCAGCCAG 60.884 60.000 0.54 0.00 0.00 4.85 R
1326 1395 1.261097 GTCTAAAGTGCTCGAGCGTC 58.739 55.000 30.75 24.82 45.83 5.19 R
2567 2664 2.225091 TGAATGGATGAACAAGCCCACT 60.225 45.455 0.00 0.00 0.00 4.00 R
2770 2868 8.062448 CGCATATTAGCTTTTACCTAAGTCAAC 58.938 37.037 0.00 0.00 0.00 3.18 R
2834 2932 6.861065 AATTTACTCGCAACAGGGTATATG 57.139 37.500 0.00 0.00 0.00 1.78 R
3053 3270 3.802948 AGACAGGGTTAATAGCGTCAG 57.197 47.619 0.00 0.00 0.00 3.51 R
3310 3529 8.759481 TTGCTACCTATATCTATCCAGATGAG 57.241 38.462 0.00 0.00 41.75 2.90 R
3837 4058 4.142249 TGTCACTTCTTCACTGAAAGACGA 60.142 41.667 0.00 0.00 35.06 4.20 R
4099 4320 1.041437 GCTAATGACTAGCCCTCCGT 58.959 55.000 0.00 0.00 46.46 4.69 R
5881 9546 0.242825 CGAACGAGGAGGCACAACTA 59.757 55.000 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.876309 ATAGTAATTCATTGGCGGGGT 57.124 42.857 0.00 0.00 0.00 4.95
21 22 4.986054 ATAGTAATTCATTGGCGGGGTA 57.014 40.909 0.00 0.00 0.00 3.69
22 23 2.927028 AGTAATTCATTGGCGGGGTAC 58.073 47.619 0.00 0.00 0.00 3.34
23 24 2.508300 AGTAATTCATTGGCGGGGTACT 59.492 45.455 0.00 0.00 0.00 2.73
24 25 2.525105 AATTCATTGGCGGGGTACTT 57.475 45.000 0.00 0.00 0.00 2.24
25 26 2.052782 ATTCATTGGCGGGGTACTTC 57.947 50.000 0.00 0.00 0.00 3.01
26 27 0.988832 TTCATTGGCGGGGTACTTCT 59.011 50.000 0.00 0.00 0.00 2.85
27 28 0.988832 TCATTGGCGGGGTACTTCTT 59.011 50.000 0.00 0.00 0.00 2.52
28 29 1.353022 TCATTGGCGGGGTACTTCTTT 59.647 47.619 0.00 0.00 0.00 2.52
29 30 1.743394 CATTGGCGGGGTACTTCTTTC 59.257 52.381 0.00 0.00 0.00 2.62
30 31 0.320946 TTGGCGGGGTACTTCTTTCG 60.321 55.000 0.00 0.00 0.00 3.46
31 32 1.294459 GGCGGGGTACTTCTTTCGT 59.706 57.895 0.00 0.00 0.00 3.85
32 33 1.017701 GGCGGGGTACTTCTTTCGTG 61.018 60.000 0.00 0.00 0.00 4.35
33 34 1.017701 GCGGGGTACTTCTTTCGTGG 61.018 60.000 0.00 0.00 0.00 4.94
34 35 1.017701 CGGGGTACTTCTTTCGTGGC 61.018 60.000 0.00 0.00 0.00 5.01
35 36 0.675837 GGGGTACTTCTTTCGTGGCC 60.676 60.000 0.00 0.00 0.00 5.36
36 37 0.035739 GGGTACTTCTTTCGTGGCCA 59.964 55.000 0.00 0.00 0.00 5.36
37 38 1.543871 GGGTACTTCTTTCGTGGCCAA 60.544 52.381 7.24 0.00 0.00 4.52
38 39 1.534163 GGTACTTCTTTCGTGGCCAAC 59.466 52.381 7.24 0.15 0.00 3.77
39 40 1.534163 GTACTTCTTTCGTGGCCAACC 59.466 52.381 7.24 0.00 0.00 3.77
40 41 0.822121 ACTTCTTTCGTGGCCAACCC 60.822 55.000 7.24 0.00 33.59 4.11
41 42 0.821711 CTTCTTTCGTGGCCAACCCA 60.822 55.000 7.24 0.00 42.79 4.51
42 43 0.821711 TTCTTTCGTGGCCAACCCAG 60.822 55.000 7.24 1.30 46.54 4.45
43 44 1.528309 CTTTCGTGGCCAACCCAGT 60.528 57.895 7.24 0.00 46.54 4.00
44 45 0.250553 CTTTCGTGGCCAACCCAGTA 60.251 55.000 7.24 0.00 46.54 2.74
45 46 0.183014 TTTCGTGGCCAACCCAGTAA 59.817 50.000 7.24 0.00 46.54 2.24
46 47 0.183014 TTCGTGGCCAACCCAGTAAA 59.817 50.000 7.24 0.00 46.54 2.01
47 48 0.250553 TCGTGGCCAACCCAGTAAAG 60.251 55.000 7.24 0.00 46.54 1.85
48 49 0.250553 CGTGGCCAACCCAGTAAAGA 60.251 55.000 7.24 0.00 46.54 2.52
49 50 1.816183 CGTGGCCAACCCAGTAAAGAA 60.816 52.381 7.24 0.00 46.54 2.52
50 51 2.312390 GTGGCCAACCCAGTAAAGAAA 58.688 47.619 7.24 0.00 46.54 2.52
51 52 2.897326 GTGGCCAACCCAGTAAAGAAAT 59.103 45.455 7.24 0.00 46.54 2.17
52 53 4.083565 GTGGCCAACCCAGTAAAGAAATA 58.916 43.478 7.24 0.00 46.54 1.40
62 63 6.116126 CCCAGTAAAGAAATACCTCCTCTTG 58.884 44.000 0.00 0.00 29.93 3.02
71 72 7.703755 AGAAATACCTCCTCTTGAAATTTCCT 58.296 34.615 15.48 0.00 32.41 3.36
83 84 9.890352 CTCTTGAAATTTCCTTAGAGTTTCTTG 57.110 33.333 21.92 7.07 33.24 3.02
92 93 4.383226 CCTTAGAGTTTCTTGGGAGCTACC 60.383 50.000 8.55 8.55 38.08 3.18
98 100 1.153549 CTTGGGAGCTACCGCAGTC 60.154 63.158 11.35 0.00 40.11 3.51
104 106 2.432628 GCTACCGCAGTCGCTTGT 60.433 61.111 0.00 0.00 32.13 3.16
108 110 0.249531 TACCGCAGTCGCTTGTTTCA 60.250 50.000 0.00 0.00 35.30 2.69
111 113 1.835483 CGCAGTCGCTTGTTTCAGCT 61.835 55.000 0.00 0.00 37.68 4.24
113 115 1.127582 GCAGTCGCTTGTTTCAGCTAG 59.872 52.381 0.00 0.00 37.68 3.42
116 118 1.531149 GTCGCTTGTTTCAGCTAGCAA 59.469 47.619 18.83 0.00 37.68 3.91
123 125 5.106555 GCTTGTTTCAGCTAGCAAATACTCA 60.107 40.000 18.83 4.37 37.23 3.41
151 153 7.116736 GGAGGACATTCTAAAGGGTAAAATGA 58.883 38.462 0.00 0.00 32.86 2.57
152 154 7.780271 GGAGGACATTCTAAAGGGTAAAATGAT 59.220 37.037 0.00 0.00 32.86 2.45
153 155 8.525290 AGGACATTCTAAAGGGTAAAATGATG 57.475 34.615 0.00 0.00 32.86 3.07
154 156 7.068716 AGGACATTCTAAAGGGTAAAATGATGC 59.931 37.037 0.00 0.00 32.86 3.91
162 164 6.909550 AAGGGTAAAATGATGCTTGTGTTA 57.090 33.333 0.00 0.00 0.00 2.41
167 169 6.806739 GGTAAAATGATGCTTGTGTTAGAACC 59.193 38.462 0.00 0.00 0.00 3.62
168 170 4.685169 AATGATGCTTGTGTTAGAACCG 57.315 40.909 0.00 0.00 0.00 4.44
176 178 1.418637 TGTGTTAGAACCGGAAAGGCT 59.581 47.619 9.46 0.00 46.52 4.58
180 182 4.698780 GTGTTAGAACCGGAAAGGCTAAAT 59.301 41.667 9.46 0.00 46.52 1.40
181 183 4.939439 TGTTAGAACCGGAAAGGCTAAATC 59.061 41.667 9.46 0.00 46.52 2.17
182 184 3.000684 AGAACCGGAAAGGCTAAATCC 57.999 47.619 9.46 0.00 46.52 3.01
188 190 2.835027 GGAAAGGCTAAATCCGACGAT 58.165 47.619 0.00 0.00 0.00 3.73
189 191 2.801111 GGAAAGGCTAAATCCGACGATC 59.199 50.000 0.00 0.00 0.00 3.69
190 192 3.454375 GAAAGGCTAAATCCGACGATCA 58.546 45.455 0.00 0.00 0.00 2.92
195 197 2.034842 GCTAAATCCGACGATCACAACG 60.035 50.000 0.00 0.00 0.00 4.10
211 213 0.537371 AACGAGTTCTTTGGCCTGGG 60.537 55.000 3.32 0.00 0.00 4.45
213 215 0.955919 CGAGTTCTTTGGCCTGGGTC 60.956 60.000 3.32 0.00 0.00 4.46
216 218 3.204467 TTCTTTGGCCTGGGTCCCG 62.204 63.158 3.32 0.00 0.00 5.14
231 233 3.155167 CCGCCTCCTAGGGACCAC 61.155 72.222 9.46 0.00 35.37 4.16
232 234 2.363795 CGCCTCCTAGGGACCACA 60.364 66.667 9.46 0.00 35.37 4.17
234 236 1.338136 CGCCTCCTAGGGACCACATT 61.338 60.000 9.46 0.00 35.37 2.71
240 242 1.679944 CCTAGGGACCACATTGCACTG 60.680 57.143 0.00 1.95 0.00 3.66
260 262 2.568062 TGTCAGTAGATGGGGCGTTTTA 59.432 45.455 0.00 0.00 0.00 1.52
263 265 1.134189 AGTAGATGGGGCGTTTTAGGC 60.134 52.381 0.00 0.00 0.00 3.93
268 270 2.396157 GGGGCGTTTTAGGCGAGTG 61.396 63.158 0.00 0.00 37.59 3.51
272 274 1.355971 GCGTTTTAGGCGAGTGATGA 58.644 50.000 0.00 0.00 0.00 2.92
275 277 3.060473 GCGTTTTAGGCGAGTGATGATAC 60.060 47.826 0.00 0.00 0.00 2.24
277 279 4.357142 GTTTTAGGCGAGTGATGATACGA 58.643 43.478 0.00 0.00 0.00 3.43
278 280 3.620929 TTAGGCGAGTGATGATACGAC 57.379 47.619 0.00 0.00 0.00 4.34
283 285 0.306840 GAGTGATGATACGACGGCGA 59.693 55.000 22.49 0.00 41.64 5.54
289 291 0.744057 TGATACGACGGCGACTGGTA 60.744 55.000 22.49 10.09 41.64 3.25
292 294 0.810648 TACGACGGCGACTGGTAATT 59.189 50.000 22.49 0.00 41.64 1.40
296 298 3.066621 ACGACGGCGACTGGTAATTATAA 59.933 43.478 22.49 0.00 41.64 0.98
299 301 6.032094 CGACGGCGACTGGTAATTATAATAT 58.968 40.000 16.62 0.00 40.82 1.28
303 305 6.809689 CGGCGACTGGTAATTATAATATGACA 59.190 38.462 0.00 0.00 0.00 3.58
304 306 7.201410 CGGCGACTGGTAATTATAATATGACAC 60.201 40.741 0.00 0.00 0.00 3.67
305 307 7.064253 GGCGACTGGTAATTATAATATGACACC 59.936 40.741 0.00 2.99 0.00 4.16
317 319 9.844257 TTATAATATGACACCATGATGTGACAA 57.156 29.630 0.00 0.00 42.44 3.18
329 331 6.038936 CCATGATGTGACAATCATCTTTGCTA 59.961 38.462 0.00 0.00 43.83 3.49
330 332 7.255486 CCATGATGTGACAATCATCTTTGCTAT 60.255 37.037 0.00 0.00 43.83 2.97
364 366 9.791820 TTCTTGTTCTATTGTAATGATGCATTG 57.208 29.630 0.00 0.00 35.54 2.82
413 415 3.776158 TGGCCTTGACCATGCAAC 58.224 55.556 3.32 0.00 33.75 4.17
418 420 0.040157 CCTTGACCATGCAACACACG 60.040 55.000 0.00 0.00 0.00 4.49
425 427 0.311790 CATGCAACACACGGAGCTTT 59.688 50.000 0.00 0.00 0.00 3.51
431 433 3.304391 GCAACACACGGAGCTTTCAATTA 60.304 43.478 0.00 0.00 0.00 1.40
432 434 4.615912 GCAACACACGGAGCTTTCAATTAT 60.616 41.667 0.00 0.00 0.00 1.28
438 440 2.286418 CGGAGCTTTCAATTATCGTGCC 60.286 50.000 0.00 0.00 0.00 5.01
446 448 1.455786 CAATTATCGTGCCGTCCGATC 59.544 52.381 4.66 0.00 43.48 3.69
447 449 0.671796 ATTATCGTGCCGTCCGATCA 59.328 50.000 4.66 0.00 43.48 2.92
468 494 4.756642 TCAAGATGAATCACTTGTTCGCTT 59.243 37.500 18.10 0.00 42.50 4.68
470 496 5.695851 AGATGAATCACTTGTTCGCTTTT 57.304 34.783 0.00 0.00 0.00 2.27
471 497 5.693814 AGATGAATCACTTGTTCGCTTTTC 58.306 37.500 0.00 0.00 0.00 2.29
475 501 5.178623 TGAATCACTTGTTCGCTTTTCGTAT 59.821 36.000 0.00 0.00 39.67 3.06
476 502 6.366604 TGAATCACTTGTTCGCTTTTCGTATA 59.633 34.615 0.00 0.00 39.67 1.47
482 508 5.696260 TGTTCGCTTTTCGTATAGTCATG 57.304 39.130 0.00 0.00 39.67 3.07
487 513 4.738252 CGCTTTTCGTATAGTCATGTAGCA 59.262 41.667 0.00 0.00 0.00 3.49
491 517 7.477144 TTTTCGTATAGTCATGTAGCATTGG 57.523 36.000 0.00 0.00 0.00 3.16
494 520 5.048013 TCGTATAGTCATGTAGCATTGGAGG 60.048 44.000 0.00 0.00 0.00 4.30
496 522 6.072119 CGTATAGTCATGTAGCATTGGAGGTA 60.072 42.308 0.00 0.00 0.00 3.08
501 527 5.294552 GTCATGTAGCATTGGAGGTAAAGTC 59.705 44.000 0.00 0.00 0.00 3.01
503 529 3.844211 TGTAGCATTGGAGGTAAAGTCCT 59.156 43.478 0.00 0.00 40.97 3.85
506 532 5.104259 AGCATTGGAGGTAAAGTCCTTAG 57.896 43.478 0.00 0.00 38.02 2.18
507 533 4.783227 AGCATTGGAGGTAAAGTCCTTAGA 59.217 41.667 0.00 0.00 38.02 2.10
509 535 5.944007 GCATTGGAGGTAAAGTCCTTAGAAA 59.056 40.000 0.00 0.00 38.02 2.52
515 541 6.654161 GGAGGTAAAGTCCTTAGAAAAGAACC 59.346 42.308 0.00 0.00 38.02 3.62
518 544 3.697619 AGTCCTTAGAAAAGAACCGGG 57.302 47.619 6.32 0.00 34.37 5.73
528 554 4.214758 AGAAAAGAACCGGGTGTTTATTCG 59.785 41.667 15.93 0.00 37.29 3.34
536 562 3.231160 CGGGTGTTTATTCGACAAAAGC 58.769 45.455 0.00 0.00 0.00 3.51
542 568 6.305638 GGTGTTTATTCGACAAAAGCTTCATC 59.694 38.462 0.00 0.00 0.00 2.92
548 574 9.935682 TTATTCGACAAAAGCTTCATCATAATC 57.064 29.630 0.00 0.00 0.00 1.75
566 592 8.567285 TCATAATCAGAATAGATCGAGTAGCA 57.433 34.615 0.00 0.00 0.00 3.49
567 593 8.672815 TCATAATCAGAATAGATCGAGTAGCAG 58.327 37.037 0.00 0.00 0.00 4.24
586 612 5.760193 GCAGATTGCTTGACGAGATATAG 57.240 43.478 0.00 0.00 40.96 1.31
589 615 4.281941 AGATTGCTTGACGAGATATAGCCA 59.718 41.667 0.00 0.00 0.00 4.75
592 618 5.060662 TGCTTGACGAGATATAGCCATAC 57.939 43.478 0.00 0.00 0.00 2.39
593 619 4.082190 TGCTTGACGAGATATAGCCATACC 60.082 45.833 0.00 0.00 0.00 2.73
594 620 4.082190 GCTTGACGAGATATAGCCATACCA 60.082 45.833 0.00 0.00 0.00 3.25
595 621 5.566826 GCTTGACGAGATATAGCCATACCAA 60.567 44.000 0.00 0.00 0.00 3.67
596 622 5.644977 TGACGAGATATAGCCATACCAAG 57.355 43.478 0.00 0.00 0.00 3.61
597 623 4.082190 TGACGAGATATAGCCATACCAAGC 60.082 45.833 0.00 0.00 0.00 4.01
598 624 3.832490 ACGAGATATAGCCATACCAAGCA 59.168 43.478 0.00 0.00 0.00 3.91
599 625 4.177026 CGAGATATAGCCATACCAAGCAC 58.823 47.826 0.00 0.00 0.00 4.40
600 626 4.321974 CGAGATATAGCCATACCAAGCACA 60.322 45.833 0.00 0.00 0.00 4.57
601 627 5.157940 AGATATAGCCATACCAAGCACAG 57.842 43.478 0.00 0.00 0.00 3.66
602 628 1.972872 ATAGCCATACCAAGCACAGC 58.027 50.000 0.00 0.00 0.00 4.40
603 629 0.617935 TAGCCATACCAAGCACAGCA 59.382 50.000 0.00 0.00 0.00 4.41
604 630 0.962356 AGCCATACCAAGCACAGCAC 60.962 55.000 0.00 0.00 0.00 4.40
605 631 1.243342 GCCATACCAAGCACAGCACA 61.243 55.000 0.00 0.00 0.00 4.57
606 632 0.806868 CCATACCAAGCACAGCACAG 59.193 55.000 0.00 0.00 0.00 3.66
607 633 0.169672 CATACCAAGCACAGCACAGC 59.830 55.000 0.00 0.00 0.00 4.40
608 634 0.962356 ATACCAAGCACAGCACAGCC 60.962 55.000 0.00 0.00 0.00 4.85
609 635 3.677648 CCAAGCACAGCACAGCCC 61.678 66.667 0.00 0.00 0.00 5.19
610 636 2.596631 CAAGCACAGCACAGCCCT 60.597 61.111 0.00 0.00 0.00 5.19
611 637 1.302752 CAAGCACAGCACAGCCCTA 60.303 57.895 0.00 0.00 0.00 3.53
612 638 0.679002 CAAGCACAGCACAGCCCTAT 60.679 55.000 0.00 0.00 0.00 2.57
613 639 0.679002 AAGCACAGCACAGCCCTATG 60.679 55.000 0.00 0.00 0.00 2.23
614 640 2.117156 GCACAGCACAGCCCTATGG 61.117 63.158 0.00 0.00 0.00 2.74
626 652 1.663695 CCCTATGGCTACACAAACGG 58.336 55.000 0.00 0.00 0.00 4.44
627 653 1.014352 CCTATGGCTACACAAACGGC 58.986 55.000 0.00 0.00 0.00 5.68
628 654 1.014352 CTATGGCTACACAAACGGCC 58.986 55.000 0.00 0.00 44.31 6.13
629 655 0.393267 TATGGCTACACAAACGGCCC 60.393 55.000 0.00 0.00 43.50 5.80
630 656 2.033602 GGCTACACAAACGGCCCT 59.966 61.111 0.00 0.00 38.77 5.19
631 657 2.332654 GGCTACACAAACGGCCCTG 61.333 63.158 0.00 0.00 38.77 4.45
632 658 1.302192 GCTACACAAACGGCCCTGA 60.302 57.895 0.00 0.00 0.00 3.86
633 659 0.887387 GCTACACAAACGGCCCTGAA 60.887 55.000 0.00 0.00 0.00 3.02
634 660 1.821216 CTACACAAACGGCCCTGAAT 58.179 50.000 0.00 0.00 0.00 2.57
635 661 2.159382 CTACACAAACGGCCCTGAATT 58.841 47.619 0.00 0.00 0.00 2.17
636 662 0.958822 ACACAAACGGCCCTGAATTC 59.041 50.000 0.00 0.00 0.00 2.17
637 663 1.247567 CACAAACGGCCCTGAATTCT 58.752 50.000 7.05 0.00 0.00 2.40
638 664 1.613437 CACAAACGGCCCTGAATTCTT 59.387 47.619 7.05 0.00 0.00 2.52
639 665 1.613437 ACAAACGGCCCTGAATTCTTG 59.387 47.619 7.05 2.89 0.00 3.02
640 666 0.603065 AAACGGCCCTGAATTCTTGC 59.397 50.000 7.05 6.46 0.00 4.01
641 667 0.539438 AACGGCCCTGAATTCTTGCA 60.539 50.000 7.05 0.00 0.00 4.08
642 668 0.323725 ACGGCCCTGAATTCTTGCAT 60.324 50.000 7.05 0.00 0.00 3.96
643 669 0.383231 CGGCCCTGAATTCTTGCATC 59.617 55.000 7.05 0.00 0.00 3.91
644 670 1.772836 GGCCCTGAATTCTTGCATCT 58.227 50.000 7.05 0.00 0.00 2.90
645 671 2.746142 CGGCCCTGAATTCTTGCATCTA 60.746 50.000 7.05 0.00 0.00 1.98
646 672 2.883386 GGCCCTGAATTCTTGCATCTAG 59.117 50.000 7.05 0.00 0.00 2.43
647 673 3.434167 GGCCCTGAATTCTTGCATCTAGA 60.434 47.826 7.05 0.00 0.00 2.43
648 674 4.396522 GCCCTGAATTCTTGCATCTAGAT 58.603 43.478 7.05 0.00 0.00 1.98
649 675 4.826183 GCCCTGAATTCTTGCATCTAGATT 59.174 41.667 1.33 0.00 0.00 2.40
650 676 5.278364 GCCCTGAATTCTTGCATCTAGATTG 60.278 44.000 1.33 0.25 0.00 2.67
651 677 5.826737 CCCTGAATTCTTGCATCTAGATTGT 59.173 40.000 1.33 0.00 0.00 2.71
652 678 6.994496 CCCTGAATTCTTGCATCTAGATTGTA 59.006 38.462 1.33 0.00 0.00 2.41
653 679 7.172875 CCCTGAATTCTTGCATCTAGATTGTAG 59.827 40.741 1.33 0.72 0.00 2.74
654 680 7.307870 CCTGAATTCTTGCATCTAGATTGTAGC 60.308 40.741 1.33 4.12 0.00 3.58
655 681 7.278135 TGAATTCTTGCATCTAGATTGTAGCT 58.722 34.615 1.33 0.00 0.00 3.32
656 682 7.440556 TGAATTCTTGCATCTAGATTGTAGCTC 59.559 37.037 1.33 0.00 0.00 4.09
657 683 6.477053 TTCTTGCATCTAGATTGTAGCTCT 57.523 37.500 1.33 0.00 0.00 4.09
658 684 5.840715 TCTTGCATCTAGATTGTAGCTCTG 58.159 41.667 1.33 0.00 0.00 3.35
659 685 5.362143 TCTTGCATCTAGATTGTAGCTCTGT 59.638 40.000 1.33 0.00 0.00 3.41
660 686 6.547510 TCTTGCATCTAGATTGTAGCTCTGTA 59.452 38.462 1.33 0.00 0.00 2.74
661 687 6.715347 TGCATCTAGATTGTAGCTCTGTAA 57.285 37.500 1.33 0.00 0.00 2.41
662 688 7.295322 TGCATCTAGATTGTAGCTCTGTAAT 57.705 36.000 1.33 0.00 0.00 1.89
663 689 7.374272 TGCATCTAGATTGTAGCTCTGTAATC 58.626 38.462 1.33 0.00 0.00 1.75
664 690 7.014615 TGCATCTAGATTGTAGCTCTGTAATCA 59.985 37.037 1.33 0.00 33.19 2.57
665 691 8.034215 GCATCTAGATTGTAGCTCTGTAATCAT 58.966 37.037 1.33 0.00 33.19 2.45
666 692 9.356433 CATCTAGATTGTAGCTCTGTAATCATG 57.644 37.037 1.33 0.00 33.19 3.07
667 693 8.697507 TCTAGATTGTAGCTCTGTAATCATGA 57.302 34.615 0.00 0.00 33.19 3.07
668 694 9.136323 TCTAGATTGTAGCTCTGTAATCATGAA 57.864 33.333 0.00 0.00 33.19 2.57
669 695 9.755804 CTAGATTGTAGCTCTGTAATCATGAAA 57.244 33.333 0.00 0.00 33.19 2.69
678 704 8.462016 AGCTCTGTAATCATGAAATAAAACACC 58.538 33.333 0.00 0.00 0.00 4.16
679 705 8.462016 GCTCTGTAATCATGAAATAAAACACCT 58.538 33.333 0.00 0.00 0.00 4.00
685 711 7.671495 ATCATGAAATAAAACACCTTTTGCC 57.329 32.000 0.00 0.00 31.74 4.52
686 712 5.994668 TCATGAAATAAAACACCTTTTGCCC 59.005 36.000 0.00 0.00 31.74 5.36
687 713 5.622346 TGAAATAAAACACCTTTTGCCCT 57.378 34.783 0.00 0.00 31.74 5.19
688 714 5.606505 TGAAATAAAACACCTTTTGCCCTC 58.393 37.500 0.00 0.00 31.74 4.30
689 715 3.934457 ATAAAACACCTTTTGCCCTCG 57.066 42.857 0.00 0.00 31.74 4.63
690 716 1.480789 AAAACACCTTTTGCCCTCGT 58.519 45.000 0.00 0.00 0.00 4.18
691 717 2.351706 AAACACCTTTTGCCCTCGTA 57.648 45.000 0.00 0.00 0.00 3.43
692 718 2.351706 AACACCTTTTGCCCTCGTAA 57.648 45.000 0.00 0.00 0.00 3.18
693 719 2.351706 ACACCTTTTGCCCTCGTAAA 57.648 45.000 0.00 0.00 0.00 2.01
694 720 2.657143 ACACCTTTTGCCCTCGTAAAA 58.343 42.857 0.00 0.00 33.29 1.52
695 721 3.025262 ACACCTTTTGCCCTCGTAAAAA 58.975 40.909 0.00 0.00 33.85 1.94
709 735 4.818314 AAAAACCCACAAGCCCCA 57.182 50.000 0.00 0.00 0.00 4.96
710 736 3.013682 AAAAACCCACAAGCCCCAA 57.986 47.368 0.00 0.00 0.00 4.12
711 737 0.544223 AAAAACCCACAAGCCCCAAC 59.456 50.000 0.00 0.00 0.00 3.77
712 738 0.618968 AAAACCCACAAGCCCCAACA 60.619 50.000 0.00 0.00 0.00 3.33
713 739 1.334384 AAACCCACAAGCCCCAACAC 61.334 55.000 0.00 0.00 0.00 3.32
714 740 2.123511 CCCACAAGCCCCAACACA 60.124 61.111 0.00 0.00 0.00 3.72
715 741 2.498056 CCCACAAGCCCCAACACAC 61.498 63.158 0.00 0.00 0.00 3.82
716 742 2.721231 CACAAGCCCCAACACACG 59.279 61.111 0.00 0.00 0.00 4.49
717 743 2.518349 ACAAGCCCCAACACACGG 60.518 61.111 0.00 0.00 0.00 4.94
718 744 3.294493 CAAGCCCCAACACACGGG 61.294 66.667 0.00 0.00 44.07 5.28
732 758 4.704833 CGGGCGGGGGATGCTATG 62.705 72.222 0.00 0.00 0.00 2.23
733 759 3.249189 GGGCGGGGGATGCTATGA 61.249 66.667 0.00 0.00 0.00 2.15
734 760 2.829384 GGGCGGGGGATGCTATGAA 61.829 63.158 0.00 0.00 0.00 2.57
735 761 1.380302 GGCGGGGGATGCTATGAAT 59.620 57.895 0.00 0.00 0.00 2.57
736 762 0.678048 GGCGGGGGATGCTATGAATC 60.678 60.000 0.00 0.00 0.00 2.52
737 763 0.326264 GCGGGGGATGCTATGAATCT 59.674 55.000 0.00 0.00 0.00 2.40
738 764 1.947678 GCGGGGGATGCTATGAATCTG 60.948 57.143 0.00 0.00 0.00 2.90
739 765 1.831580 GGGGGATGCTATGAATCTGC 58.168 55.000 0.00 0.00 0.00 4.26
740 766 1.446907 GGGGATGCTATGAATCTGCG 58.553 55.000 0.00 0.00 0.00 5.18
741 767 1.002430 GGGGATGCTATGAATCTGCGA 59.998 52.381 0.00 0.00 0.00 5.10
742 768 2.072298 GGGATGCTATGAATCTGCGAC 58.928 52.381 0.00 0.00 0.00 5.19
743 769 2.548707 GGGATGCTATGAATCTGCGACA 60.549 50.000 0.00 0.00 0.00 4.35
744 770 3.133691 GGATGCTATGAATCTGCGACAA 58.866 45.455 0.00 0.00 0.00 3.18
759 785 2.220824 GCGACAATGCCAAAAGGAAAAC 59.779 45.455 0.00 0.00 0.00 2.43
767 794 7.772757 ACAATGCCAAAAGGAAAACAAAAGATA 59.227 29.630 0.00 0.00 0.00 1.98
772 799 8.835439 GCCAAAAGGAAAACAAAAGATATTCAA 58.165 29.630 0.00 0.00 0.00 2.69
810 838 0.967887 AGCAGAGAGTCTTAGCGGCA 60.968 55.000 1.45 0.00 0.00 5.69
842 871 4.394712 CAGTCCCACCTGTCGGCC 62.395 72.222 0.00 0.00 0.00 6.13
878 909 1.835531 CTAGGAAACCCGGCCTCTTTA 59.164 52.381 0.00 0.00 35.73 1.85
893 926 5.531287 GGCCTCTTTAAAGTTGAGACTGAAA 59.469 40.000 14.74 0.00 35.91 2.69
897 930 6.062095 TCTTTAAAGTTGAGACTGAAAGGGG 58.938 40.000 14.74 0.00 38.71 4.79
898 931 2.278332 AAGTTGAGACTGAAAGGGGC 57.722 50.000 0.00 0.00 39.30 5.80
899 932 1.439543 AGTTGAGACTGAAAGGGGCT 58.560 50.000 0.00 0.00 39.30 5.19
900 933 1.072965 AGTTGAGACTGAAAGGGGCTG 59.927 52.381 0.00 0.00 39.30 4.85
901 934 0.401738 TTGAGACTGAAAGGGGCTGG 59.598 55.000 0.00 0.00 39.30 4.85
1011 1051 3.766591 AGAGAAAGAAGATGAGCTCGGAA 59.233 43.478 9.64 0.00 0.00 4.30
1016 1056 2.158842 AGAAGATGAGCTCGGAAATGGG 60.159 50.000 9.64 0.00 0.00 4.00
1076 1116 1.208293 GGAAGTCCAGGCGAAGAAGAT 59.792 52.381 0.00 0.00 35.64 2.40
1087 1127 1.598882 GAAGAAGATGAATCCGGGGC 58.401 55.000 0.00 0.00 0.00 5.80
1088 1128 0.918983 AAGAAGATGAATCCGGGGCA 59.081 50.000 0.00 0.00 0.00 5.36
1098 1150 2.628187 ATCCGGGGCAGGAGGAAGAT 62.628 60.000 0.00 0.00 44.55 2.40
1115 1167 3.971245 AGATGAGAAAAAGGACTCGCT 57.029 42.857 0.00 0.00 36.11 4.93
1122 1174 0.947244 AAAAGGACTCGCTTGCACTG 59.053 50.000 0.00 0.00 0.00 3.66
1194 1252 1.615392 ACTGCCAAGATTGCAAAGGAC 59.385 47.619 1.71 1.37 38.46 3.85
1229 1287 3.306019 GCAAAATCAGGTCCGATTGGTTT 60.306 43.478 0.00 0.00 35.77 3.27
1302 1371 3.012518 ACATCATGTTCTTGTAGCAGCC 58.987 45.455 0.00 0.00 0.00 4.85
1326 1395 2.189521 CCCCCGGTGAAGATTCCG 59.810 66.667 0.00 0.00 45.42 4.30
1332 1401 2.666989 GGTGAAGATTCCGACGCTC 58.333 57.895 0.00 0.00 0.00 5.03
1343 1412 1.134530 CCGACGCTCGAGCACTTTAG 61.135 60.000 34.69 20.43 43.74 1.85
1366 1435 1.450211 CCCGACCAGGTTTCACACT 59.550 57.895 0.00 0.00 38.74 3.55
1382 1451 2.510238 CTCAAGCGCTTCTCCCCG 60.510 66.667 22.21 8.24 0.00 5.73
1390 1459 2.125912 CTTCTCCCCGTGCGTGAG 60.126 66.667 3.11 3.11 0.00 3.51
1394 1463 3.343788 CTCCCCGTGCGTGAGTCTC 62.344 68.421 0.00 0.00 0.00 3.36
1397 1466 2.202362 CCGTGCGTGAGTCTCGAG 60.202 66.667 18.17 5.93 0.00 4.04
1431 1500 4.757594 CTCTCTGCTGCTAAATCTCTTGT 58.242 43.478 0.00 0.00 0.00 3.16
1481 1551 2.069776 CTGCCCTCTGGGTTCAAGA 58.930 57.895 4.42 0.00 46.51 3.02
1482 1552 0.622665 CTGCCCTCTGGGTTCAAGAT 59.377 55.000 4.42 0.00 46.51 2.40
1483 1553 1.005215 CTGCCCTCTGGGTTCAAGATT 59.995 52.381 4.42 0.00 46.51 2.40
1523 1593 5.189928 ACCAAATGCGTGGATAGATTTACA 58.810 37.500 7.81 0.00 41.65 2.41
1549 1630 9.988815 AATTTATAGCACTACCTCTGATTGTAG 57.011 33.333 11.02 11.02 40.21 2.74
1550 1631 3.810310 AGCACTACCTCTGATTGTAGC 57.190 47.619 12.03 3.76 38.38 3.58
1551 1632 2.099921 AGCACTACCTCTGATTGTAGCG 59.900 50.000 12.03 6.38 38.38 4.26
1552 1633 2.464865 CACTACCTCTGATTGTAGCGC 58.535 52.381 0.00 0.00 38.38 5.92
1563 1645 4.371786 TGATTGTAGCGCCTATCTTCAAG 58.628 43.478 2.29 0.00 0.00 3.02
1570 1652 3.118261 AGCGCCTATCTTCAAGGAAATCA 60.118 43.478 2.29 0.00 36.08 2.57
1666 1748 9.468532 TGCCAAACCAAAATAAAATAAAAATGC 57.531 25.926 0.00 0.00 0.00 3.56
1747 1830 4.981806 CAACTTGTTTGGGACTGAAAGA 57.018 40.909 0.00 0.00 37.43 2.52
1749 1832 4.236527 ACTTGTTTGGGACTGAAAGACT 57.763 40.909 0.00 0.00 37.43 3.24
1751 1834 5.016831 ACTTGTTTGGGACTGAAAGACTTT 58.983 37.500 0.00 0.00 37.43 2.66
1753 1836 3.130340 TGTTTGGGACTGAAAGACTTTGC 59.870 43.478 4.85 0.00 37.43 3.68
1754 1837 3.297134 TTGGGACTGAAAGACTTTGCT 57.703 42.857 4.85 0.00 37.43 3.91
1760 1843 4.142381 GGACTGAAAGACTTTGCTGTTGTT 60.142 41.667 4.85 0.00 37.43 2.83
1761 1844 4.986622 ACTGAAAGACTTTGCTGTTGTTC 58.013 39.130 4.85 0.00 37.43 3.18
1762 1845 4.702131 ACTGAAAGACTTTGCTGTTGTTCT 59.298 37.500 4.85 0.00 37.43 3.01
1763 1846 5.880332 ACTGAAAGACTTTGCTGTTGTTCTA 59.120 36.000 4.85 0.00 37.43 2.10
1769 1852 7.369803 AGACTTTGCTGTTGTTCTATGTATG 57.630 36.000 0.00 0.00 0.00 2.39
1793 1880 7.369607 TGTACATGTGAAAATCAAACATCTGG 58.630 34.615 9.11 0.00 32.27 3.86
1805 1892 1.210204 ACATCTGGTGGAGGCCATGT 61.210 55.000 5.01 0.00 37.96 3.21
1840 1927 8.620116 AAACAATATGCATTTATAAATGGGGC 57.380 30.769 30.18 20.54 44.54 5.80
1843 1930 7.093377 ACAATATGCATTTATAAATGGGGCGAT 60.093 33.333 30.18 17.63 44.54 4.58
1849 1936 8.976353 TGCATTTATAAATGGGGCGATTATTAT 58.024 29.630 30.18 0.00 44.54 1.28
2052 2140 2.151202 ACGATTTGCCAACTGGTACTG 58.849 47.619 0.00 0.00 37.57 2.74
2125 2213 1.476652 CCATGACCGGCCACATTATGA 60.477 52.381 0.00 0.00 0.00 2.15
2567 2664 6.553953 TGCATGAGGAGTTAAACTATGGTA 57.446 37.500 0.00 0.00 0.00 3.25
2647 2744 3.756434 CCGGTGTGGAATTTATGTGACTT 59.244 43.478 0.00 0.00 42.00 3.01
2703 2801 3.199727 TCTGACAGGTGGCTTTATATGCA 59.800 43.478 1.81 0.00 0.00 3.96
2834 2932 6.296026 TGGAGGGAGTACAAAATATGTATGC 58.704 40.000 0.00 0.00 45.87 3.14
3072 3289 3.795623 TCTGACGCTATTAACCCTGTC 57.204 47.619 0.00 0.00 0.00 3.51
3250 3469 5.248020 AGTTAACCATGGCCATTCATTTTCA 59.752 36.000 17.92 0.00 0.00 2.69
3310 3529 6.254157 CCTGCAACTTGATGTATATTTTGCAC 59.746 38.462 2.11 0.00 42.06 4.57
3837 4058 0.912486 GGACCAGCCTATCCAGTTGT 59.088 55.000 0.00 0.00 34.87 3.32
4001 4222 5.993441 TGATTGTGCAGATGATGATAACGAT 59.007 36.000 0.00 0.00 0.00 3.73
4432 8077 6.596888 AGATCAATTGTGATAGTTGTCCAGTG 59.403 38.462 5.13 0.00 44.83 3.66
4481 8126 8.731275 TTTAACATAACATCATGGAAGATCGT 57.269 30.769 0.00 0.00 0.00 3.73
4525 8170 9.838339 ACTCTTACTAATGTATCATTCCCTTTG 57.162 33.333 0.00 0.00 0.00 2.77
4759 8409 4.847198 TGCTCATGTTGACAAGATATGGT 58.153 39.130 0.00 0.00 0.00 3.55
4815 8465 6.136857 TCAAGAGGTATATACAGTGCCTTCT 58.863 40.000 14.70 0.00 0.00 2.85
5020 8672 9.725019 AATGAAGTGACAATAAGTTACATCTGA 57.275 29.630 0.00 0.00 39.07 3.27
5132 8792 7.917505 GCCTTTCAGACAATTATAATGACCTTG 59.082 37.037 0.00 0.00 0.00 3.61
5232 8895 4.225042 TGTTATGCTCACTCCATAGGTTGT 59.775 41.667 0.00 0.00 0.00 3.32
5303 8966 8.134202 TGTAAGTGTATCAGATCTTGGAGAAA 57.866 34.615 0.00 0.00 0.00 2.52
5431 9094 2.719798 CCACTGCAGAAAAACGACTTG 58.280 47.619 23.35 3.50 0.00 3.16
5446 9109 2.223688 CGACTTGTCAAAAATGCCACCA 60.224 45.455 1.59 0.00 0.00 4.17
5449 9112 2.886862 TGTCAAAAATGCCACCACAG 57.113 45.000 0.00 0.00 0.00 3.66
5561 9225 3.385314 AGGACCCTTACCTGTAGAGAC 57.615 52.381 0.00 0.00 36.30 3.36
5573 9237 3.562176 CCTGTAGAGACCAAATTTGCCCT 60.562 47.826 12.92 10.90 0.00 5.19
5648 9312 1.831652 CTTCTCCCCCGCACAGTCTT 61.832 60.000 0.00 0.00 0.00 3.01
5688 9352 0.901124 CTGCCTGACTGCTTCTACCT 59.099 55.000 0.00 0.00 0.00 3.08
5689 9353 1.277557 CTGCCTGACTGCTTCTACCTT 59.722 52.381 0.00 0.00 0.00 3.50
5699 9364 2.014068 GCTTCTACCTTGGCGATTGCT 61.014 52.381 4.59 0.00 42.25 3.91
5722 9387 3.744660 CCACTACTTGTGCTCTTTCCTT 58.255 45.455 0.00 0.00 44.92 3.36
5724 9389 4.691216 CCACTACTTGTGCTCTTTCCTTAC 59.309 45.833 0.00 0.00 44.92 2.34
5825 9490 0.678684 CATGCTCATGACAGCCCACA 60.679 55.000 3.88 0.00 41.20 4.17
5881 9546 2.997897 GTCACGGGGAGGAGCTGT 60.998 66.667 0.00 0.00 0.00 4.40
5894 9559 0.610687 GAGCTGTAGTTGTGCCTCCT 59.389 55.000 0.00 0.00 0.00 3.69
5966 9636 2.781923 TGTCTGCAATGTATGTGCTGT 58.218 42.857 0.00 0.00 42.69 4.40
5974 9644 2.768253 TGTATGTGCTGTAGCTTGCT 57.232 45.000 5.38 0.00 42.66 3.91
5975 9645 2.349590 TGTATGTGCTGTAGCTTGCTG 58.650 47.619 5.26 0.00 42.66 4.41
5980 9650 0.524414 TGCTGTAGCTTGCTGCAATG 59.476 50.000 16.38 10.97 45.94 2.82
5981 9651 0.801067 GCTGTAGCTTGCTGCAATGC 60.801 55.000 16.38 19.42 45.94 3.56
6063 9803 5.416952 GATGTTGACATGTCCAGAAAGGATT 59.583 40.000 22.85 0.00 42.21 3.01
6100 9840 4.248859 ACTTGAGCATGACATCTACACAC 58.751 43.478 0.00 0.00 0.00 3.82
6111 9851 7.490962 TGACATCTACACACTTTACCAAAAG 57.509 36.000 0.00 0.00 46.34 2.27
6271 10011 6.317789 TGAAGTTGACAATAAAAGCTCCAG 57.682 37.500 0.00 0.00 0.00 3.86
6283 10023 7.951347 ATAAAAGCTCCAGAATTCTTCACAT 57.049 32.000 4.86 0.00 0.00 3.21
6305 10060 8.239314 CACATACAAGTTCTCAGCACAAAATAT 58.761 33.333 0.00 0.00 0.00 1.28
6314 10069 7.364522 TCTCAGCACAAAATATAGTTGACAC 57.635 36.000 6.16 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.876309 ACCCCGCCAATGAATTACTAT 57.124 42.857 0.00 0.00 0.00 2.12
1 2 3.712733 AGTACCCCGCCAATGAATTACTA 59.287 43.478 0.00 0.00 0.00 1.82
4 5 3.201266 AGAAGTACCCCGCCAATGAATTA 59.799 43.478 0.00 0.00 0.00 1.40
7 8 0.988832 AGAAGTACCCCGCCAATGAA 59.011 50.000 0.00 0.00 0.00 2.57
9 10 1.743394 GAAAGAAGTACCCCGCCAATG 59.257 52.381 0.00 0.00 0.00 2.82
10 11 1.677820 CGAAAGAAGTACCCCGCCAAT 60.678 52.381 0.00 0.00 0.00 3.16
11 12 0.320946 CGAAAGAAGTACCCCGCCAA 60.321 55.000 0.00 0.00 0.00 4.52
12 13 1.294138 CGAAAGAAGTACCCCGCCA 59.706 57.895 0.00 0.00 0.00 5.69
13 14 1.017701 CACGAAAGAAGTACCCCGCC 61.018 60.000 0.00 0.00 0.00 6.13
14 15 1.017701 CCACGAAAGAAGTACCCCGC 61.018 60.000 0.00 0.00 0.00 6.13
15 16 1.017701 GCCACGAAAGAAGTACCCCG 61.018 60.000 0.00 0.00 0.00 5.73
16 17 0.675837 GGCCACGAAAGAAGTACCCC 60.676 60.000 0.00 0.00 0.00 4.95
17 18 0.035739 TGGCCACGAAAGAAGTACCC 59.964 55.000 0.00 0.00 0.00 3.69
18 19 1.534163 GTTGGCCACGAAAGAAGTACC 59.466 52.381 3.88 0.00 0.00 3.34
19 20 1.534163 GGTTGGCCACGAAAGAAGTAC 59.466 52.381 3.88 0.00 34.09 2.73
20 21 1.543871 GGGTTGGCCACGAAAGAAGTA 60.544 52.381 3.88 0.00 36.17 2.24
21 22 0.822121 GGGTTGGCCACGAAAGAAGT 60.822 55.000 3.88 0.00 36.17 3.01
22 23 0.821711 TGGGTTGGCCACGAAAGAAG 60.822 55.000 3.88 0.00 36.17 2.85
23 24 0.821711 CTGGGTTGGCCACGAAAGAA 60.822 55.000 3.88 0.00 36.17 2.52
24 25 1.228124 CTGGGTTGGCCACGAAAGA 60.228 57.895 3.88 0.00 36.17 2.52
25 26 0.250553 TACTGGGTTGGCCACGAAAG 60.251 55.000 3.88 3.75 36.17 2.62
26 27 0.183014 TTACTGGGTTGGCCACGAAA 59.817 50.000 3.88 0.00 36.17 3.46
27 28 0.183014 TTTACTGGGTTGGCCACGAA 59.817 50.000 3.88 0.00 36.17 3.85
28 29 0.250553 CTTTACTGGGTTGGCCACGA 60.251 55.000 3.88 0.00 36.17 4.35
29 30 0.250553 TCTTTACTGGGTTGGCCACG 60.251 55.000 3.88 0.00 36.17 4.94
30 31 1.989706 TTCTTTACTGGGTTGGCCAC 58.010 50.000 3.88 0.00 36.17 5.01
31 32 2.757894 TTTCTTTACTGGGTTGGCCA 57.242 45.000 0.00 0.00 36.17 5.36
32 33 3.446161 GGTATTTCTTTACTGGGTTGGCC 59.554 47.826 0.00 0.00 0.00 5.36
33 34 4.341487 AGGTATTTCTTTACTGGGTTGGC 58.659 43.478 0.00 0.00 0.00 4.52
34 35 4.948004 GGAGGTATTTCTTTACTGGGTTGG 59.052 45.833 0.00 0.00 0.00 3.77
35 36 5.816682 AGGAGGTATTTCTTTACTGGGTTG 58.183 41.667 0.00 0.00 0.00 3.77
36 37 5.791141 AGAGGAGGTATTTCTTTACTGGGTT 59.209 40.000 0.00 0.00 0.00 4.11
37 38 5.351405 AGAGGAGGTATTTCTTTACTGGGT 58.649 41.667 0.00 0.00 0.00 4.51
38 39 5.959583 AGAGGAGGTATTTCTTTACTGGG 57.040 43.478 0.00 0.00 0.00 4.45
39 40 6.947464 TCAAGAGGAGGTATTTCTTTACTGG 58.053 40.000 0.00 0.00 0.00 4.00
40 41 8.848474 TTTCAAGAGGAGGTATTTCTTTACTG 57.152 34.615 0.00 0.00 0.00 2.74
44 45 8.807118 GGAAATTTCAAGAGGAGGTATTTCTTT 58.193 33.333 19.49 0.00 34.05 2.52
45 46 8.173412 AGGAAATTTCAAGAGGAGGTATTTCTT 58.827 33.333 19.49 0.00 34.05 2.52
46 47 7.703755 AGGAAATTTCAAGAGGAGGTATTTCT 58.296 34.615 19.49 0.00 34.05 2.52
47 48 7.946381 AGGAAATTTCAAGAGGAGGTATTTC 57.054 36.000 19.49 0.00 33.48 2.17
48 49 9.467796 CTAAGGAAATTTCAAGAGGAGGTATTT 57.532 33.333 19.49 0.00 0.00 1.40
49 50 8.836735 TCTAAGGAAATTTCAAGAGGAGGTATT 58.163 33.333 19.49 0.63 0.00 1.89
50 51 8.393959 TCTAAGGAAATTTCAAGAGGAGGTAT 57.606 34.615 19.49 0.00 0.00 2.73
51 52 7.458170 ACTCTAAGGAAATTTCAAGAGGAGGTA 59.542 37.037 29.09 8.69 35.84 3.08
52 53 6.273495 ACTCTAAGGAAATTTCAAGAGGAGGT 59.727 38.462 29.09 17.13 35.84 3.85
62 63 7.575909 GCTCCCAAGAAACTCTAAGGAAATTTC 60.576 40.741 9.83 9.83 30.34 2.17
71 72 3.194968 CGGTAGCTCCCAAGAAACTCTAA 59.805 47.826 0.00 0.00 0.00 2.10
83 84 4.874977 GCGACTGCGGTAGCTCCC 62.875 72.222 21.95 0.00 45.42 4.30
104 106 4.391830 CCGTTGAGTATTTGCTAGCTGAAA 59.608 41.667 17.23 9.49 0.00 2.69
108 110 3.430929 CCTCCGTTGAGTATTTGCTAGCT 60.431 47.826 17.23 0.00 36.86 3.32
111 113 3.512329 TGTCCTCCGTTGAGTATTTGCTA 59.488 43.478 0.00 0.00 36.86 3.49
113 115 2.695359 TGTCCTCCGTTGAGTATTTGC 58.305 47.619 0.00 0.00 36.86 3.68
116 118 6.540438 TTAGAATGTCCTCCGTTGAGTATT 57.460 37.500 0.00 0.00 36.86 1.89
123 125 2.910977 ACCCTTTAGAATGTCCTCCGTT 59.089 45.455 0.00 0.00 0.00 4.44
151 153 2.851263 TCCGGTTCTAACACAAGCAT 57.149 45.000 0.00 0.00 0.00 3.79
152 154 2.623878 TTCCGGTTCTAACACAAGCA 57.376 45.000 0.00 0.00 0.00 3.91
153 155 2.225727 CCTTTCCGGTTCTAACACAAGC 59.774 50.000 0.00 0.00 0.00 4.01
154 156 2.225727 GCCTTTCCGGTTCTAACACAAG 59.774 50.000 0.00 0.00 34.25 3.16
162 164 2.679930 CGGATTTAGCCTTTCCGGTTCT 60.680 50.000 0.00 0.00 46.67 3.01
168 170 2.304751 TCGTCGGATTTAGCCTTTCC 57.695 50.000 0.00 0.00 0.00 3.13
176 178 3.119743 ACTCGTTGTGATCGTCGGATTTA 60.120 43.478 0.00 0.00 31.51 1.40
180 182 0.594602 AACTCGTTGTGATCGTCGGA 59.405 50.000 0.00 0.00 0.00 4.55
181 183 0.982673 GAACTCGTTGTGATCGTCGG 59.017 55.000 0.00 0.00 0.00 4.79
182 184 1.965083 AGAACTCGTTGTGATCGTCG 58.035 50.000 0.00 0.00 0.00 5.12
183 185 3.120991 CCAAAGAACTCGTTGTGATCGTC 60.121 47.826 4.97 0.00 34.30 4.20
188 190 1.134220 AGGCCAAAGAACTCGTTGTGA 60.134 47.619 5.01 0.00 34.30 3.58
189 191 1.002468 CAGGCCAAAGAACTCGTTGTG 60.002 52.381 5.01 0.00 34.30 3.33
190 192 1.308998 CAGGCCAAAGAACTCGTTGT 58.691 50.000 5.01 0.00 34.30 3.32
195 197 0.609406 GGACCCAGGCCAAAGAACTC 60.609 60.000 5.01 0.00 0.00 3.01
213 215 4.475444 TGGTCCCTAGGAGGCGGG 62.475 72.222 11.48 0.00 42.05 6.13
216 218 0.181350 CAATGTGGTCCCTAGGAGGC 59.819 60.000 11.48 1.28 32.73 4.70
219 221 0.618458 GTGCAATGTGGTCCCTAGGA 59.382 55.000 11.48 0.00 0.00 2.94
231 233 2.941064 CCCATCTACTGACAGTGCAATG 59.059 50.000 18.58 13.51 0.00 2.82
232 234 2.092753 CCCCATCTACTGACAGTGCAAT 60.093 50.000 18.58 5.94 0.00 3.56
234 236 0.904649 CCCCATCTACTGACAGTGCA 59.095 55.000 18.58 4.60 0.00 4.57
240 242 2.109425 AAAACGCCCCATCTACTGAC 57.891 50.000 0.00 0.00 0.00 3.51
260 262 0.308068 CGTCGTATCATCACTCGCCT 59.692 55.000 0.00 0.00 0.00 5.52
263 265 0.992263 CGCCGTCGTATCATCACTCG 60.992 60.000 0.00 0.00 0.00 4.18
268 270 0.660595 CCAGTCGCCGTCGTATCATC 60.661 60.000 0.00 0.00 36.96 2.92
272 274 1.027357 ATTACCAGTCGCCGTCGTAT 58.973 50.000 0.00 0.00 36.96 3.06
275 277 2.129823 ATAATTACCAGTCGCCGTCG 57.870 50.000 0.00 0.00 0.00 5.12
277 279 6.810182 GTCATATTATAATTACCAGTCGCCGT 59.190 38.462 2.68 0.00 0.00 5.68
278 280 6.809689 TGTCATATTATAATTACCAGTCGCCG 59.190 38.462 2.68 0.00 0.00 6.46
296 298 6.358991 TGATTGTCACATCATGGTGTCATAT 58.641 36.000 9.15 0.44 36.86 1.78
299 301 4.018484 TGATTGTCACATCATGGTGTCA 57.982 40.909 9.15 2.09 39.76 3.58
303 305 5.393787 GCAAAGATGATTGTCACATCATGGT 60.394 40.000 12.40 0.00 44.29 3.55
304 306 5.041287 GCAAAGATGATTGTCACATCATGG 58.959 41.667 12.40 0.00 44.29 3.66
305 307 5.891451 AGCAAAGATGATTGTCACATCATG 58.109 37.500 12.40 0.00 44.29 3.07
339 341 8.407832 CCAATGCATCATTACAATAGAACAAGA 58.592 33.333 0.00 0.00 32.35 3.02
340 342 8.407832 TCCAATGCATCATTACAATAGAACAAG 58.592 33.333 0.00 0.00 32.35 3.16
341 343 8.291191 TCCAATGCATCATTACAATAGAACAA 57.709 30.769 0.00 0.00 32.35 2.83
343 345 7.380602 GCTTCCAATGCATCATTACAATAGAAC 59.619 37.037 0.00 0.00 32.35 3.01
347 349 6.546772 TCTGCTTCCAATGCATCATTACAATA 59.453 34.615 0.00 0.00 39.86 1.90
362 364 3.920231 AGCATGTATCTCTGCTTCCAA 57.080 42.857 0.00 0.00 46.22 3.53
399 401 0.040157 CGTGTGTTGCATGGTCAAGG 60.040 55.000 0.00 0.00 0.00 3.61
413 415 3.370978 ACGATAATTGAAAGCTCCGTGTG 59.629 43.478 0.00 0.00 0.00 3.82
418 420 3.340337 GGCACGATAATTGAAAGCTCC 57.660 47.619 0.00 0.00 0.00 4.70
438 440 3.711086 AGTGATTCATCTTGATCGGACG 58.289 45.455 0.00 0.00 0.00 4.79
446 448 4.675190 AGCGAACAAGTGATTCATCTTG 57.325 40.909 18.95 18.95 44.29 3.02
447 449 5.695851 AAAGCGAACAAGTGATTCATCTT 57.304 34.783 0.00 0.00 0.00 2.40
468 494 6.811954 TCCAATGCTACATGACTATACGAAA 58.188 36.000 0.00 0.00 0.00 3.46
470 496 5.048013 CCTCCAATGCTACATGACTATACGA 60.048 44.000 0.00 0.00 0.00 3.43
471 497 5.164233 CCTCCAATGCTACATGACTATACG 58.836 45.833 0.00 0.00 0.00 3.06
475 501 6.156256 ACTTTACCTCCAATGCTACATGACTA 59.844 38.462 0.00 0.00 0.00 2.59
476 502 5.045578 ACTTTACCTCCAATGCTACATGACT 60.046 40.000 0.00 0.00 0.00 3.41
482 508 4.489306 AGGACTTTACCTCCAATGCTAC 57.511 45.455 0.00 0.00 34.98 3.58
487 513 7.985589 TCTTTTCTAAGGACTTTACCTCCAAT 58.014 34.615 0.00 0.00 39.62 3.16
491 517 6.368243 CGGTTCTTTTCTAAGGACTTTACCTC 59.632 42.308 0.00 0.00 39.46 3.85
494 520 5.410746 CCCGGTTCTTTTCTAAGGACTTTAC 59.589 44.000 0.00 0.00 39.46 2.01
496 522 4.141321 ACCCGGTTCTTTTCTAAGGACTTT 60.141 41.667 0.00 0.00 39.46 2.66
501 527 3.136009 ACACCCGGTTCTTTTCTAAGG 57.864 47.619 0.00 0.00 32.02 2.69
503 529 6.073112 CGAATAAACACCCGGTTCTTTTCTAA 60.073 38.462 0.00 0.00 39.29 2.10
506 532 4.213906 TCGAATAAACACCCGGTTCTTTTC 59.786 41.667 0.00 0.00 39.29 2.29
507 533 4.023792 GTCGAATAAACACCCGGTTCTTTT 60.024 41.667 0.00 0.00 39.29 2.27
509 535 3.069289 GTCGAATAAACACCCGGTTCTT 58.931 45.455 0.00 0.00 39.29 2.52
515 541 3.058501 AGCTTTTGTCGAATAAACACCCG 60.059 43.478 0.00 0.00 0.00 5.28
518 544 6.855914 TGATGAAGCTTTTGTCGAATAAACAC 59.144 34.615 0.00 0.00 0.00 3.32
542 568 8.672815 TCTGCTACTCGATCTATTCTGATTATG 58.327 37.037 0.00 0.00 0.00 1.90
548 574 5.572511 GCAATCTGCTACTCGATCTATTCTG 59.427 44.000 0.00 0.00 40.96 3.02
566 592 4.281941 TGGCTATATCTCGTCAAGCAATCT 59.718 41.667 0.00 0.00 34.85 2.40
567 593 4.560128 TGGCTATATCTCGTCAAGCAATC 58.440 43.478 0.00 0.00 34.85 2.67
586 612 1.243342 TGTGCTGTGCTTGGTATGGC 61.243 55.000 0.00 0.00 0.00 4.40
589 615 0.962356 GGCTGTGCTGTGCTTGGTAT 60.962 55.000 0.00 0.00 0.00 2.73
592 618 2.753009 TAGGGCTGTGCTGTGCTTGG 62.753 60.000 0.00 0.00 0.00 3.61
593 619 0.679002 ATAGGGCTGTGCTGTGCTTG 60.679 55.000 0.00 0.00 0.00 4.01
594 620 0.679002 CATAGGGCTGTGCTGTGCTT 60.679 55.000 0.00 0.00 0.00 3.91
595 621 1.077930 CATAGGGCTGTGCTGTGCT 60.078 57.895 0.00 0.00 0.00 4.40
596 622 2.117156 CCATAGGGCTGTGCTGTGC 61.117 63.158 0.00 0.00 0.00 4.57
597 623 4.230603 CCATAGGGCTGTGCTGTG 57.769 61.111 0.00 0.00 0.00 3.66
607 633 1.663695 CCGTTTGTGTAGCCATAGGG 58.336 55.000 0.00 0.00 37.18 3.53
608 634 1.014352 GCCGTTTGTGTAGCCATAGG 58.986 55.000 0.00 0.00 0.00 2.57
609 635 1.014352 GGCCGTTTGTGTAGCCATAG 58.986 55.000 0.00 0.00 45.07 2.23
610 636 3.162448 GGCCGTTTGTGTAGCCATA 57.838 52.632 0.00 0.00 45.07 2.74
611 637 3.996614 GGCCGTTTGTGTAGCCAT 58.003 55.556 0.00 0.00 45.07 4.40
613 639 2.033602 AGGGCCGTTTGTGTAGCC 59.966 61.111 0.00 0.00 44.99 3.93
614 640 0.887387 TTCAGGGCCGTTTGTGTAGC 60.887 55.000 0.00 0.00 0.00 3.58
615 641 1.821216 ATTCAGGGCCGTTTGTGTAG 58.179 50.000 0.00 0.00 0.00 2.74
616 642 2.156098 GAATTCAGGGCCGTTTGTGTA 58.844 47.619 0.00 0.00 0.00 2.90
617 643 0.958822 GAATTCAGGGCCGTTTGTGT 59.041 50.000 0.00 0.00 0.00 3.72
618 644 1.247567 AGAATTCAGGGCCGTTTGTG 58.752 50.000 8.44 0.00 0.00 3.33
619 645 1.613437 CAAGAATTCAGGGCCGTTTGT 59.387 47.619 8.44 0.00 0.00 2.83
620 646 1.669795 GCAAGAATTCAGGGCCGTTTG 60.670 52.381 8.44 0.00 0.00 2.93
621 647 0.603065 GCAAGAATTCAGGGCCGTTT 59.397 50.000 8.44 0.00 0.00 3.60
622 648 0.539438 TGCAAGAATTCAGGGCCGTT 60.539 50.000 8.44 0.00 0.00 4.44
623 649 0.323725 ATGCAAGAATTCAGGGCCGT 60.324 50.000 8.44 0.00 0.00 5.68
624 650 0.383231 GATGCAAGAATTCAGGGCCG 59.617 55.000 8.44 0.00 0.00 6.13
625 651 1.772836 AGATGCAAGAATTCAGGGCC 58.227 50.000 8.44 0.00 0.00 5.80
626 652 3.813443 TCTAGATGCAAGAATTCAGGGC 58.187 45.455 8.44 8.49 0.00 5.19
627 653 5.826737 ACAATCTAGATGCAAGAATTCAGGG 59.173 40.000 5.86 0.00 0.00 4.45
628 654 6.939132 ACAATCTAGATGCAAGAATTCAGG 57.061 37.500 5.86 0.00 0.00 3.86
629 655 7.441760 AGCTACAATCTAGATGCAAGAATTCAG 59.558 37.037 5.86 0.69 0.00 3.02
630 656 7.278135 AGCTACAATCTAGATGCAAGAATTCA 58.722 34.615 5.86 0.00 0.00 2.57
631 657 7.656948 AGAGCTACAATCTAGATGCAAGAATTC 59.343 37.037 5.86 0.00 0.00 2.17
632 658 7.441760 CAGAGCTACAATCTAGATGCAAGAATT 59.558 37.037 5.86 0.00 0.00 2.17
633 659 6.930164 CAGAGCTACAATCTAGATGCAAGAAT 59.070 38.462 5.86 0.00 0.00 2.40
634 660 6.127225 ACAGAGCTACAATCTAGATGCAAGAA 60.127 38.462 5.86 0.00 0.00 2.52
635 661 5.362143 ACAGAGCTACAATCTAGATGCAAGA 59.638 40.000 5.86 0.00 0.00 3.02
636 662 5.599732 ACAGAGCTACAATCTAGATGCAAG 58.400 41.667 5.86 5.18 0.00 4.01
637 663 5.604758 ACAGAGCTACAATCTAGATGCAA 57.395 39.130 5.86 0.00 0.00 4.08
638 664 6.715347 TTACAGAGCTACAATCTAGATGCA 57.285 37.500 5.86 0.00 0.00 3.96
639 665 7.374272 TGATTACAGAGCTACAATCTAGATGC 58.626 38.462 5.86 5.32 0.00 3.91
640 666 9.356433 CATGATTACAGAGCTACAATCTAGATG 57.644 37.037 5.86 3.46 0.00 2.90
641 667 9.306777 TCATGATTACAGAGCTACAATCTAGAT 57.693 33.333 0.00 0.00 0.00 1.98
642 668 8.697507 TCATGATTACAGAGCTACAATCTAGA 57.302 34.615 0.00 0.00 0.00 2.43
643 669 9.755804 TTTCATGATTACAGAGCTACAATCTAG 57.244 33.333 0.00 0.00 0.00 2.43
652 678 8.462016 GGTGTTTTATTTCATGATTACAGAGCT 58.538 33.333 0.00 0.00 0.00 4.09
653 679 8.462016 AGGTGTTTTATTTCATGATTACAGAGC 58.538 33.333 0.00 0.00 0.00 4.09
659 685 9.213799 GGCAAAAGGTGTTTTATTTCATGATTA 57.786 29.630 0.00 0.00 33.93 1.75
660 686 7.174772 GGGCAAAAGGTGTTTTATTTCATGATT 59.825 33.333 0.00 0.00 33.93 2.57
661 687 6.654582 GGGCAAAAGGTGTTTTATTTCATGAT 59.345 34.615 0.00 0.00 33.93 2.45
662 688 5.994668 GGGCAAAAGGTGTTTTATTTCATGA 59.005 36.000 0.00 0.00 33.93 3.07
663 689 5.997129 AGGGCAAAAGGTGTTTTATTTCATG 59.003 36.000 0.00 0.00 33.93 3.07
664 690 6.186420 AGGGCAAAAGGTGTTTTATTTCAT 57.814 33.333 0.00 0.00 33.93 2.57
665 691 5.606505 GAGGGCAAAAGGTGTTTTATTTCA 58.393 37.500 0.00 0.00 33.93 2.69
666 692 4.684242 CGAGGGCAAAAGGTGTTTTATTTC 59.316 41.667 0.00 0.00 33.93 2.17
667 693 4.100344 ACGAGGGCAAAAGGTGTTTTATTT 59.900 37.500 0.00 0.00 33.93 1.40
668 694 3.639561 ACGAGGGCAAAAGGTGTTTTATT 59.360 39.130 0.00 0.00 33.93 1.40
669 695 3.227614 ACGAGGGCAAAAGGTGTTTTAT 58.772 40.909 0.00 0.00 33.93 1.40
670 696 2.657143 ACGAGGGCAAAAGGTGTTTTA 58.343 42.857 0.00 0.00 33.93 1.52
671 697 1.480789 ACGAGGGCAAAAGGTGTTTT 58.519 45.000 0.00 0.00 36.22 2.43
672 698 2.351706 TACGAGGGCAAAAGGTGTTT 57.648 45.000 0.00 0.00 0.00 2.83
673 699 2.351706 TTACGAGGGCAAAAGGTGTT 57.648 45.000 0.00 0.00 0.00 3.32
674 700 2.351706 TTTACGAGGGCAAAAGGTGT 57.648 45.000 0.00 0.00 0.00 4.16
675 701 3.719173 TTTTTACGAGGGCAAAAGGTG 57.281 42.857 0.00 0.00 0.00 4.00
692 718 0.544223 GTTGGGGCTTGTGGGTTTTT 59.456 50.000 0.00 0.00 0.00 1.94
693 719 0.618968 TGTTGGGGCTTGTGGGTTTT 60.619 50.000 0.00 0.00 0.00 2.43
694 720 1.002274 TGTTGGGGCTTGTGGGTTT 59.998 52.632 0.00 0.00 0.00 3.27
695 721 1.760480 GTGTTGGGGCTTGTGGGTT 60.760 57.895 0.00 0.00 0.00 4.11
696 722 2.123468 GTGTTGGGGCTTGTGGGT 60.123 61.111 0.00 0.00 0.00 4.51
697 723 2.123511 TGTGTTGGGGCTTGTGGG 60.124 61.111 0.00 0.00 0.00 4.61
698 724 2.844451 CGTGTGTTGGGGCTTGTGG 61.844 63.158 0.00 0.00 0.00 4.17
699 725 2.721231 CGTGTGTTGGGGCTTGTG 59.279 61.111 0.00 0.00 0.00 3.33
700 726 2.518349 CCGTGTGTTGGGGCTTGT 60.518 61.111 0.00 0.00 0.00 3.16
701 727 3.294493 CCCGTGTGTTGGGGCTTG 61.294 66.667 0.00 0.00 43.39 4.01
715 741 4.704833 CATAGCATCCCCCGCCCG 62.705 72.222 0.00 0.00 0.00 6.13
716 742 2.142292 ATTCATAGCATCCCCCGCCC 62.142 60.000 0.00 0.00 0.00 6.13
717 743 0.678048 GATTCATAGCATCCCCCGCC 60.678 60.000 0.00 0.00 0.00 6.13
718 744 0.326264 AGATTCATAGCATCCCCCGC 59.674 55.000 0.00 0.00 0.00 6.13
719 745 1.947678 GCAGATTCATAGCATCCCCCG 60.948 57.143 0.00 0.00 0.00 5.73
720 746 1.831580 GCAGATTCATAGCATCCCCC 58.168 55.000 0.00 0.00 0.00 5.40
721 747 1.002430 TCGCAGATTCATAGCATCCCC 59.998 52.381 0.00 0.00 0.00 4.81
722 748 2.072298 GTCGCAGATTCATAGCATCCC 58.928 52.381 0.00 0.00 40.67 3.85
723 749 2.759191 TGTCGCAGATTCATAGCATCC 58.241 47.619 0.00 0.00 40.67 3.51
724 750 4.709640 CATTGTCGCAGATTCATAGCATC 58.290 43.478 0.00 0.00 40.67 3.91
725 751 3.058432 GCATTGTCGCAGATTCATAGCAT 60.058 43.478 0.00 0.00 40.67 3.79
726 752 2.288729 GCATTGTCGCAGATTCATAGCA 59.711 45.455 0.00 0.00 40.67 3.49
727 753 2.350197 GGCATTGTCGCAGATTCATAGC 60.350 50.000 0.00 0.00 40.67 2.97
728 754 2.874086 TGGCATTGTCGCAGATTCATAG 59.126 45.455 0.00 0.00 40.67 2.23
729 755 2.916640 TGGCATTGTCGCAGATTCATA 58.083 42.857 0.00 0.00 40.67 2.15
730 756 1.753930 TGGCATTGTCGCAGATTCAT 58.246 45.000 0.00 0.00 40.67 2.57
731 757 1.532523 TTGGCATTGTCGCAGATTCA 58.467 45.000 0.00 0.00 40.67 2.57
732 758 2.634982 TTTGGCATTGTCGCAGATTC 57.365 45.000 0.00 0.00 40.67 2.52
733 759 2.353011 CCTTTTGGCATTGTCGCAGATT 60.353 45.455 0.00 0.00 40.67 2.40
734 760 1.203052 CCTTTTGGCATTGTCGCAGAT 59.797 47.619 0.00 0.00 40.67 2.90
735 761 0.597568 CCTTTTGGCATTGTCGCAGA 59.402 50.000 0.00 0.00 0.00 4.26
736 762 0.597568 TCCTTTTGGCATTGTCGCAG 59.402 50.000 0.00 0.00 40.12 5.18
737 763 1.035923 TTCCTTTTGGCATTGTCGCA 58.964 45.000 0.00 0.00 40.12 5.10
738 764 2.147436 TTTCCTTTTGGCATTGTCGC 57.853 45.000 0.00 0.00 40.12 5.19
739 765 3.452474 TGTTTTCCTTTTGGCATTGTCG 58.548 40.909 0.00 0.00 40.12 4.35
740 766 5.809719 TTTGTTTTCCTTTTGGCATTGTC 57.190 34.783 0.00 0.00 40.12 3.18
741 767 5.942826 TCTTTTGTTTTCCTTTTGGCATTGT 59.057 32.000 0.00 0.00 40.12 2.71
742 768 6.434018 TCTTTTGTTTTCCTTTTGGCATTG 57.566 33.333 0.00 0.00 40.12 2.82
743 769 8.922931 ATATCTTTTGTTTTCCTTTTGGCATT 57.077 26.923 0.00 0.00 40.12 3.56
744 770 8.922931 AATATCTTTTGTTTTCCTTTTGGCAT 57.077 26.923 0.00 0.00 40.12 4.40
759 785 7.493645 GGCCCATCTTTCTTTGAATATCTTTTG 59.506 37.037 0.00 0.00 0.00 2.44
767 794 2.833943 GTGGGCCCATCTTTCTTTGAAT 59.166 45.455 31.45 0.00 0.00 2.57
772 799 1.005215 CTCTGTGGGCCCATCTTTCTT 59.995 52.381 31.45 0.00 0.00 2.52
776 803 2.207501 CTGCTCTGTGGGCCCATCTT 62.208 60.000 31.45 0.00 0.00 2.40
810 838 4.809496 CTGCCTGGCCGCTCCATT 62.809 66.667 17.53 0.00 45.50 3.16
826 855 4.954118 TGGCCGACAGGTGGGACT 62.954 66.667 7.86 0.00 37.38 3.85
856 886 0.976590 AGAGGCCGGGTTTCCTAGTC 60.977 60.000 2.18 0.00 31.71 2.59
878 909 2.175715 AGCCCCTTTCAGTCTCAACTTT 59.824 45.455 0.00 0.00 31.71 2.66
989 1029 3.360867 TCCGAGCTCATCTTCTTTCTCT 58.639 45.455 15.40 0.00 0.00 3.10
1011 1051 5.221904 CCTTTTGTTCTTGGATTTCCCCATT 60.222 40.000 0.00 0.00 35.87 3.16
1016 1056 3.557054 GGCCCTTTTGTTCTTGGATTTCC 60.557 47.826 0.00 0.00 0.00 3.13
1076 1116 3.089874 CCTCCTGCCCCGGATTCA 61.090 66.667 0.73 0.00 31.43 2.57
1087 1127 4.940654 GTCCTTTTTCTCATCTTCCTCCTG 59.059 45.833 0.00 0.00 0.00 3.86
1088 1128 4.849235 AGTCCTTTTTCTCATCTTCCTCCT 59.151 41.667 0.00 0.00 0.00 3.69
1098 1150 1.873591 GCAAGCGAGTCCTTTTTCTCA 59.126 47.619 0.00 0.00 0.00 3.27
1115 1167 2.277591 GGCATGGGAAGCAGTGCAA 61.278 57.895 19.20 0.00 39.27 4.08
1122 1174 4.883354 CCTCCGGGCATGGGAAGC 62.883 72.222 0.00 0.00 32.02 3.86
1145 1203 0.883814 GGGATCGATGAAGCAGCCAG 60.884 60.000 0.54 0.00 0.00 4.85
1194 1252 1.994779 GATTTTGCGGCATCCAGTTTG 59.005 47.619 2.28 0.00 0.00 2.93
1229 1287 2.427002 GGATTCTGAGGATGGGGAGAGA 60.427 54.545 0.00 0.00 0.00 3.10
1326 1395 1.261097 GTCTAAAGTGCTCGAGCGTC 58.739 55.000 30.75 24.82 45.83 5.19
1332 1401 4.934989 GGGGGTCTAAAGTGCTCG 57.065 61.111 0.00 0.00 0.00 5.03
1366 1435 3.311110 ACGGGGAGAAGCGCTTGA 61.311 61.111 30.47 0.00 0.00 3.02
1382 1451 2.505118 GCCTCGAGACTCACGCAC 60.505 66.667 15.71 0.00 0.00 5.34
1414 1483 3.084039 CCCAACAAGAGATTTAGCAGCA 58.916 45.455 0.00 0.00 0.00 4.41
1431 1500 5.197224 ACCAAGAGATGATGAAATCCCAA 57.803 39.130 0.00 0.00 44.73 4.12
1481 1551 5.630415 TGGTCAGCCAGCTAGTTAATAAT 57.370 39.130 0.00 0.00 40.46 1.28
1482 1552 5.429681 TTGGTCAGCCAGCTAGTTAATAA 57.570 39.130 0.00 0.00 46.91 1.40
1483 1553 5.429681 TTTGGTCAGCCAGCTAGTTAATA 57.570 39.130 0.00 0.00 46.91 0.98
1523 1593 9.988815 CTACAATCAGAGGTAGTGCTATAAATT 57.011 33.333 4.54 0.00 33.85 1.82
1549 1630 3.206150 TGATTTCCTTGAAGATAGGCGC 58.794 45.455 0.00 0.00 32.59 6.53
1550 1631 4.818546 ACATGATTTCCTTGAAGATAGGCG 59.181 41.667 0.00 0.00 32.59 5.52
1551 1632 5.824624 TCACATGATTTCCTTGAAGATAGGC 59.175 40.000 0.00 0.00 32.59 3.93
1552 1633 7.501559 ACATCACATGATTTCCTTGAAGATAGG 59.498 37.037 0.00 0.00 31.21 2.57
1563 1645 8.246180 AGTATCAAACAACATCACATGATTTCC 58.754 33.333 0.00 0.00 31.21 3.13
1570 1652 6.151691 GCAACAGTATCAAACAACATCACAT 58.848 36.000 0.00 0.00 0.00 3.21
1665 1747 3.842732 AAACATTACGCCTACCTTTGC 57.157 42.857 0.00 0.00 0.00 3.68
1747 1830 7.659799 TGTACATACATAGAACAACAGCAAAGT 59.340 33.333 0.00 0.00 0.00 2.66
1749 1832 7.971183 TGTACATACATAGAACAACAGCAAA 57.029 32.000 0.00 0.00 0.00 3.68
1751 1834 7.064490 CACATGTACATACATAGAACAACAGCA 59.936 37.037 8.32 0.00 44.57 4.41
1753 1836 8.702163 TCACATGTACATACATAGAACAACAG 57.298 34.615 8.32 0.00 44.57 3.16
1754 1837 9.495572 TTTCACATGTACATACATAGAACAACA 57.504 29.630 8.32 3.38 44.57 3.33
1769 1852 7.326789 CACCAGATGTTTGATTTTCACATGTAC 59.673 37.037 0.00 0.00 31.10 2.90
1939 2026 8.874744 ATAATCTTTTCTTAAGACCTAGCGTC 57.125 34.615 4.18 3.84 42.32 5.19
1970 2057 5.310451 AGGACTTGCCGAAACTTTAATACA 58.690 37.500 0.00 0.00 43.43 2.29
2052 2140 3.689161 TGACCCATCGATGTTCACATTTC 59.311 43.478 23.27 8.31 36.57 2.17
2125 2213 6.966021 ACGAAAAATACAGTTGCAGTACAAT 58.034 32.000 0.00 0.00 41.27 2.71
2356 2450 6.128634 GGAATCAACTTATGAAAGACGTTCGT 60.129 38.462 0.00 0.00 42.54 3.85
2360 2454 5.475719 TCGGAATCAACTTATGAAAGACGT 58.524 37.500 0.00 0.00 42.54 4.34
2437 2531 8.821686 TGGAATAAGAGGCATAAGAAAATCAA 57.178 30.769 0.00 0.00 0.00 2.57
2541 2638 5.824624 CCATAGTTTAACTCCTCATGCATGT 59.175 40.000 25.43 8.46 0.00 3.21
2567 2664 2.225091 TGAATGGATGAACAAGCCCACT 60.225 45.455 0.00 0.00 0.00 4.00
2770 2868 8.062448 CGCATATTAGCTTTTACCTAAGTCAAC 58.938 37.037 0.00 0.00 0.00 3.18
2834 2932 6.861065 AATTTACTCGCAACAGGGTATATG 57.139 37.500 0.00 0.00 0.00 1.78
3053 3270 3.802948 AGACAGGGTTAATAGCGTCAG 57.197 47.619 0.00 0.00 0.00 3.51
3310 3529 8.759481 TTGCTACCTATATCTATCCAGATGAG 57.241 38.462 0.00 0.00 41.75 2.90
3837 4058 4.142249 TGTCACTTCTTCACTGAAAGACGA 60.142 41.667 0.00 0.00 35.06 4.20
3909 4130 4.653801 TGCAGCTCTACCATAAGTTATCCA 59.346 41.667 0.00 0.00 0.00 3.41
4001 4222 9.256477 GTGACAATAAATATTACCTCGTCATCA 57.744 33.333 9.48 0.00 33.84 3.07
4099 4320 1.041437 GCTAATGACTAGCCCTCCGT 58.959 55.000 0.00 0.00 46.46 4.69
4424 8069 5.972935 ACATATTTCGATACACACTGGACA 58.027 37.500 0.00 0.00 0.00 4.02
4524 8169 8.853077 ATGTCAATTCAAATAGAGTTCACTCA 57.147 30.769 9.62 0.00 45.21 3.41
4759 8409 1.546961 TCATCAATGTGGCACATGCA 58.453 45.000 31.99 21.59 44.52 3.96
5020 8672 3.758554 GCATGAAGTTACCCAATGTCACT 59.241 43.478 0.00 0.00 32.77 3.41
5132 8792 8.181573 TGAACTTACAGAAACATGAACTTCAAC 58.818 33.333 0.00 0.00 0.00 3.18
5203 8866 6.319658 CCTATGGAGTGAGCATAACACATTTT 59.680 38.462 0.00 0.00 0.00 1.82
5218 8881 2.859165 ACACCACAACCTATGGAGTG 57.141 50.000 0.00 0.00 39.28 3.51
5303 8966 6.058183 GGAGATGTGTACCTCTTGCAATAAT 58.942 40.000 0.00 0.00 0.00 1.28
5431 9094 1.069049 AGCTGTGGTGGCATTTTTGAC 59.931 47.619 0.00 0.00 0.00 3.18
5446 9109 8.275040 ACATATTTCAAAGTATAGGGAAGCTGT 58.725 33.333 0.00 0.00 0.00 4.40
5449 9112 7.441458 ACGACATATTTCAAAGTATAGGGAAGC 59.559 37.037 0.00 0.00 0.00 3.86
5561 9225 2.149973 AGAGGCTAGGGCAAATTTGG 57.850 50.000 19.47 3.85 40.87 3.28
5573 9237 3.637229 GCTAGATGTGTGGTAAGAGGCTA 59.363 47.826 0.00 0.00 0.00 3.93
5648 9312 3.636231 CGGTTGGAGGCTGGGTGA 61.636 66.667 0.00 0.00 0.00 4.02
5760 9425 1.951130 CTGTGCAGTTCGTCGCTGT 60.951 57.895 0.00 0.00 36.42 4.40
5881 9546 0.242825 CGAACGAGGAGGCACAACTA 59.757 55.000 0.00 0.00 0.00 2.24
5894 9559 1.068748 GTGACTAGAACAGGCGAACGA 60.069 52.381 0.00 0.00 33.39 3.85
5941 9611 3.242969 GCACATACATTGCAGACATGGAG 60.243 47.826 0.00 0.00 39.93 3.86
5966 9636 1.243342 AACCGCATTGCAGCAAGCTA 61.243 50.000 14.47 0.00 45.94 3.32
5974 9644 4.876125 TGAAATAGAAAAACCGCATTGCA 58.124 34.783 9.69 0.00 0.00 4.08
5975 9645 4.327087 CCTGAAATAGAAAAACCGCATTGC 59.673 41.667 0.00 0.00 0.00 3.56
5980 9650 4.395231 AGCTACCTGAAATAGAAAAACCGC 59.605 41.667 0.00 0.00 0.00 5.68
5981 9651 7.333672 ACTTAGCTACCTGAAATAGAAAAACCG 59.666 37.037 0.00 0.00 0.00 4.44
6100 9840 6.917533 AGTCATGCTCAATCTTTTGGTAAAG 58.082 36.000 0.00 0.00 41.74 1.85
6111 9851 3.128242 CCAACCTGAAGTCATGCTCAATC 59.872 47.826 0.00 0.00 0.00 2.67
6283 10023 9.502091 AACTATATTTTGTGCTGAGAACTTGTA 57.498 29.630 0.00 0.00 0.00 2.41
6305 10060 2.894902 TGCACAAGAACGTGTCAACTA 58.105 42.857 0.00 0.00 39.19 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.