Multiple sequence alignment - TraesCS4D01G257700
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G257700
chr4D
100.000
5766
0
0
1
5766
427465608
427459843
0.000
10648.0
1
TraesCS4D01G257700
chr4B
93.391
2981
124
36
2826
5766
523451598
523448651
0.000
4346.0
2
TraesCS4D01G257700
chr4B
92.932
2858
113
29
1
2813
523454461
523451648
0.000
4076.0
3
TraesCS4D01G257700
chr4A
90.679
2682
123
54
305
2907
38639352
38641985
0.000
3450.0
4
TraesCS4D01G257700
chr4A
91.945
1949
67
37
3824
5766
38642878
38644742
0.000
2647.0
5
TraesCS4D01G257700
chr4A
92.233
515
36
4
3259
3769
38642361
38642875
0.000
726.0
6
TraesCS4D01G257700
chr7D
100.000
29
0
0
3792
3820
299188963
299188935
0.003
54.7
7
TraesCS4D01G257700
chr7A
100.000
29
0
0
3792
3820
3860972
3860944
0.003
54.7
8
TraesCS4D01G257700
chr7A
100.000
28
0
0
3793
3820
332446777
332446750
0.010
52.8
9
TraesCS4D01G257700
chr3A
94.444
36
1
1
3792
3827
67305590
67305624
0.003
54.7
10
TraesCS4D01G257700
chr7B
100.000
28
0
0
3793
3820
255075426
255075399
0.010
52.8
11
TraesCS4D01G257700
chr1B
100.000
28
0
0
3792
3819
412897629
412897602
0.010
52.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G257700
chr4D
427459843
427465608
5765
True
10648.000000
10648
100.0000
1
5766
1
chr4D.!!$R1
5765
1
TraesCS4D01G257700
chr4B
523448651
523454461
5810
True
4211.000000
4346
93.1615
1
5766
2
chr4B.!!$R1
5765
2
TraesCS4D01G257700
chr4A
38639352
38644742
5390
False
2274.333333
3450
91.6190
305
5766
3
chr4A.!!$F1
5461
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
683
721
0.523072
GATCCACAGCACGCATTTGT
59.477
50.0
0.00
0.0
0.0
2.83
F
889
943
0.666913
TAGTACATCTCCGAAGCCGC
59.333
55.0
0.00
0.0
0.0
6.53
F
1049
1112
0.676184
TCTTCTTGTGCGTGCTCTCT
59.324
50.0
0.00
0.0
0.0
3.10
F
1976
2063
0.723981
GCATGACCAGCGACTTCTTC
59.276
55.0
0.00
0.0
0.0
2.87
F
2814
2908
1.149361
GACGGTGAGTGTTTGTGCGA
61.149
55.0
0.00
0.0
0.0
5.10
F
2816
2910
1.151777
CGGTGAGTGTTTGTGCGACT
61.152
55.0
0.00
0.0
0.0
4.18
F
3725
3942
0.312729
CCCTTTTTGGTACCGCACAC
59.687
55.0
7.57
0.0
0.0
3.82
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1487
1574
0.740868
CGGTGATGAGGAACGCACAT
60.741
55.000
0.00
0.0
43.58
3.21
R
2432
2522
1.149174
CACCTTGTCCCAGTGCAGT
59.851
57.895
0.00
0.0
0.00
4.40
R
2938
3144
1.202794
TCACAATCAAGCACAGCTCCA
60.203
47.619
0.00
0.0
38.25
3.86
R
3705
3920
0.183014
TGTGCGGTACCAAAAAGGGA
59.817
50.000
13.54
0.0
43.89
4.20
R
3706
3921
0.312729
GTGTGCGGTACCAAAAAGGG
59.687
55.000
13.54
0.0
43.89
3.95
R
4655
4874
1.083706
ATTCTGCTCCTCCCACCCT
59.916
57.895
0.00
0.0
0.00
4.34
R
5665
5916
0.318120
ATGCCAAACCCTTTGCTTCG
59.682
50.000
0.00
0.0
39.31
3.79
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
70
71
5.248640
TCTCATTCTTTGGATCAAGGACAC
58.751
41.667
0.00
0.00
29.47
3.67
75
76
3.074390
TCTTTGGATCAAGGACACCATGT
59.926
43.478
0.00
0.00
32.31
3.21
145
146
7.975616
TGTTTCTTATGATCAATAAAGCTTGGC
59.024
33.333
0.00
0.00
30.24
4.52
157
159
8.147058
TCAATAAAGCTTGGCAGATTGTTTAAA
58.853
29.630
0.00
0.00
31.18
1.52
214
216
3.384467
TGGCAAGGAGGAAAAGAAACTTG
59.616
43.478
0.00
0.00
38.57
3.16
228
230
4.708177
AGAAACTTGACTAGCAAAGCAGA
58.292
39.130
5.19
0.00
35.74
4.26
257
259
4.678743
GGGTGGCAACCTGACCCC
62.679
72.222
16.11
2.21
46.70
4.95
264
266
3.168528
AACCTGACCCCGCACTGT
61.169
61.111
0.00
0.00
0.00
3.55
295
297
4.067192
GCATTTGCTGGAATCAAAAAGGT
58.933
39.130
0.00
0.00
37.04
3.50
324
332
5.391523
CCGTCCATTGACAACGTTATGAATT
60.392
40.000
0.00
0.00
41.85
2.17
337
349
8.377681
CAACGTTATGAATTAAGCTAACGAAGA
58.622
33.333
18.09
0.00
45.58
2.87
429
459
9.005777
AGATACTAGAAGTACTATTACTGCTGC
57.994
37.037
10.37
0.00
43.36
5.25
507
537
4.614555
TCGTGCATGTGTGGAATATTTC
57.385
40.909
5.68
0.00
0.00
2.17
622
660
7.360861
CCGATCAAAGTTCTTGTACATTAGCAA
60.361
37.037
0.00
0.00
0.00
3.91
662
700
1.688735
GCAGGCAGGAAAAAGAGGTTT
59.311
47.619
0.00
0.00
0.00
3.27
663
701
2.890945
GCAGGCAGGAAAAAGAGGTTTA
59.109
45.455
0.00
0.00
0.00
2.01
664
702
3.057245
GCAGGCAGGAAAAAGAGGTTTAG
60.057
47.826
0.00
0.00
0.00
1.85
665
703
4.398319
CAGGCAGGAAAAAGAGGTTTAGA
58.602
43.478
0.00
0.00
0.00
2.10
666
704
5.012893
CAGGCAGGAAAAAGAGGTTTAGAT
58.987
41.667
0.00
0.00
0.00
1.98
667
705
5.124617
CAGGCAGGAAAAAGAGGTTTAGATC
59.875
44.000
0.00
0.00
0.00
2.75
668
706
4.399618
GGCAGGAAAAAGAGGTTTAGATCC
59.600
45.833
0.00
0.00
0.00
3.36
669
707
5.010282
GCAGGAAAAAGAGGTTTAGATCCA
58.990
41.667
0.00
0.00
30.64
3.41
670
708
5.106118
GCAGGAAAAAGAGGTTTAGATCCAC
60.106
44.000
0.00
0.00
30.64
4.02
671
709
6.003950
CAGGAAAAAGAGGTTTAGATCCACA
58.996
40.000
0.00
0.00
30.64
4.17
672
710
6.150140
CAGGAAAAAGAGGTTTAGATCCACAG
59.850
42.308
0.00
0.00
30.64
3.66
674
712
4.640771
AAAGAGGTTTAGATCCACAGCA
57.359
40.909
0.00
0.00
0.00
4.41
675
713
3.618690
AGAGGTTTAGATCCACAGCAC
57.381
47.619
0.00
0.00
0.00
4.40
677
715
0.727398
GGTTTAGATCCACAGCACGC
59.273
55.000
0.00
0.00
0.00
5.34
678
716
1.438651
GTTTAGATCCACAGCACGCA
58.561
50.000
0.00
0.00
0.00
5.24
680
718
2.401583
TTAGATCCACAGCACGCATT
57.598
45.000
0.00
0.00
0.00
3.56
681
719
2.401583
TAGATCCACAGCACGCATTT
57.598
45.000
0.00
0.00
0.00
2.32
682
720
0.806868
AGATCCACAGCACGCATTTG
59.193
50.000
0.00
0.00
0.00
2.32
683
721
0.523072
GATCCACAGCACGCATTTGT
59.477
50.000
0.00
0.00
0.00
2.83
684
722
0.961019
ATCCACAGCACGCATTTGTT
59.039
45.000
0.00
0.00
0.00
2.83
685
723
0.743688
TCCACAGCACGCATTTGTTT
59.256
45.000
0.00
0.00
0.00
2.83
686
724
1.135915
TCCACAGCACGCATTTGTTTT
59.864
42.857
0.00
0.00
0.00
2.43
687
725
1.932511
CCACAGCACGCATTTGTTTTT
59.067
42.857
0.00
0.00
0.00
1.94
688
726
2.033832
CCACAGCACGCATTTGTTTTTC
60.034
45.455
0.00
0.00
0.00
2.29
689
727
2.602211
CACAGCACGCATTTGTTTTTCA
59.398
40.909
0.00
0.00
0.00
2.69
693
731
3.182173
AGCACGCATTTGTTTTTCATTCG
59.818
39.130
0.00
0.00
0.00
3.34
739
787
5.043903
GCCGAAGAAAAGAAAAGAAAAGCT
58.956
37.500
0.00
0.00
0.00
3.74
744
792
5.650543
AGAAAAGAAAAGAAAAGCTGCGAA
58.349
33.333
0.00
0.00
0.00
4.70
766
814
4.853268
AGAAAAGAAGCAAAAGAGAAGCG
58.147
39.130
0.00
0.00
0.00
4.68
842
896
1.002087
ACCAGACCGTTGTTGATCTCC
59.998
52.381
0.00
0.00
0.00
3.71
843
897
1.276421
CCAGACCGTTGTTGATCTCCT
59.724
52.381
0.00
0.00
0.00
3.69
844
898
2.611518
CAGACCGTTGTTGATCTCCTC
58.388
52.381
0.00
0.00
0.00
3.71
889
943
0.666913
TAGTACATCTCCGAAGCCGC
59.333
55.000
0.00
0.00
0.00
6.53
937
993
2.945668
GTCTTCTCTCTCCTCTCAGCTC
59.054
54.545
0.00
0.00
0.00
4.09
1029
1085
2.757314
GCTCTGGCTTTGGCTTTTATCT
59.243
45.455
0.00
0.00
38.73
1.98
1049
1112
0.676184
TCTTCTTGTGCGTGCTCTCT
59.324
50.000
0.00
0.00
0.00
3.10
1328
1415
1.059584
TGTCCAGTGATGGTGGTGGT
61.060
55.000
0.00
0.00
36.37
4.16
1331
1418
1.973281
CAGTGATGGTGGTGGTGGC
60.973
63.158
0.00
0.00
0.00
5.01
1332
1419
2.115052
GTGATGGTGGTGGTGGCA
59.885
61.111
0.00
0.00
0.00
4.92
1490
1577
2.816958
CTGCTCGGCTTCGCATGT
60.817
61.111
0.00
0.00
35.32
3.21
1802
1889
2.123251
ACGATGGGCTCCTCCGAT
60.123
61.111
0.00
0.00
35.84
4.18
1976
2063
0.723981
GCATGACCAGCGACTTCTTC
59.276
55.000
0.00
0.00
0.00
2.87
2066
2153
2.977178
CGCTTCTCCACTGGCTCT
59.023
61.111
0.00
0.00
0.00
4.09
2201
2291
3.365265
CCCAAGTCCAACGCAGCC
61.365
66.667
0.00
0.00
0.00
4.85
2255
2345
2.928416
GGCGTCAACTAACAGCCTT
58.072
52.632
0.00
0.00
44.06
4.35
2432
2522
2.359107
CTGCCGAAGCTGAAGCCA
60.359
61.111
0.00
0.00
43.38
4.75
2549
2643
6.073331
ACAGTAAACGCTCTCTATCCGTATAC
60.073
42.308
0.00
0.00
34.41
1.47
2602
2696
1.339151
GGCGTCTCTTTCAGGTTGGAT
60.339
52.381
0.00
0.00
0.00
3.41
2770
2864
2.202349
GCCTTGAATGTCACGCGC
60.202
61.111
5.73
0.00
0.00
6.86
2792
2886
2.441164
AGGTCTCGGATGCGCTCT
60.441
61.111
9.73
0.00
0.00
4.09
2813
2907
1.275657
GACGGTGAGTGTTTGTGCG
59.724
57.895
0.00
0.00
0.00
5.34
2814
2908
1.149361
GACGGTGAGTGTTTGTGCGA
61.149
55.000
0.00
0.00
0.00
5.10
2816
2910
1.151777
CGGTGAGTGTTTGTGCGACT
61.152
55.000
0.00
0.00
0.00
4.18
2819
2913
2.470821
GTGAGTGTTTGTGCGACTACT
58.529
47.619
0.00
0.00
0.00
2.57
2820
2914
2.218759
GTGAGTGTTTGTGCGACTACTG
59.781
50.000
0.00
0.00
0.00
2.74
2823
2917
2.159156
AGTGTTTGTGCGACTACTGTGA
60.159
45.455
0.00
0.00
0.00
3.58
2824
2918
2.800544
GTGTTTGTGCGACTACTGTGAT
59.199
45.455
0.00
0.00
0.00
3.06
2831
2962
4.754618
TGTGCGACTACTGTGATTTTGATT
59.245
37.500
0.00
0.00
0.00
2.57
2843
2974
9.768662
ACTGTGATTTTGATTAAATTTTCAGCT
57.231
25.926
0.00
0.00
36.59
4.24
2845
2976
9.761504
TGTGATTTTGATTAAATTTTCAGCTCA
57.238
25.926
0.00
0.00
36.59
4.26
2859
2990
5.381174
TTCAGCTCATTTTGACCTGATTG
57.619
39.130
3.95
0.00
38.47
2.67
2866
2997
4.773674
TCATTTTGACCTGATTGGCATTCT
59.226
37.500
10.41
0.00
40.22
2.40
2867
2998
5.951148
TCATTTTGACCTGATTGGCATTCTA
59.049
36.000
10.41
0.00
40.22
2.10
2870
3001
5.643379
TTGACCTGATTGGCATTCTAAAC
57.357
39.130
10.41
2.03
40.22
2.01
2874
3007
4.946157
ACCTGATTGGCATTCTAAACTGAG
59.054
41.667
10.41
0.00
40.22
3.35
2892
3028
1.996191
GAGCCAGCTTTCTACTGTTCG
59.004
52.381
0.00
0.00
33.09
3.95
2901
3037
6.365247
CAGCTTTCTACTGTTCGTTAGCTAAA
59.635
38.462
7.99
0.00
0.00
1.85
2938
3144
9.389755
ACTATTTGTTTGCAAACCTTAAATTGT
57.610
25.926
33.33
29.92
45.99
2.71
2943
3149
3.988819
TGCAAACCTTAAATTGTGGAGC
58.011
40.909
0.00
0.00
0.00
4.70
2945
3151
3.989817
GCAAACCTTAAATTGTGGAGCTG
59.010
43.478
0.00
0.00
0.00
4.24
2948
3154
2.558359
ACCTTAAATTGTGGAGCTGTGC
59.442
45.455
0.00
0.00
0.00
4.57
3019
3233
9.436957
GTAGGACACTCTTTTCATCTGATTTTA
57.563
33.333
0.00
0.00
0.00
1.52
3146
3360
7.514721
ACCTCAACAGAATTTACAAGGACTTA
58.485
34.615
0.00
0.00
0.00
2.24
3223
3437
5.100259
GTGAACATCCAGCAATTGATGAAG
58.900
41.667
24.73
15.17
40.64
3.02
3316
3531
8.632679
ACTAAAATTTGCTCTCTGAATCAAACA
58.367
29.630
0.00
0.00
32.17
2.83
3317
3532
7.704789
AAAATTTGCTCTCTGAATCAAACAC
57.295
32.000
0.00
0.00
32.17
3.32
3368
3583
5.545658
TCATACTTTTCAATGGAGCGTTC
57.454
39.130
0.00
0.00
0.00
3.95
3578
3793
3.557595
CAGAACGCTTTCTCAAGACTGTT
59.442
43.478
1.83
0.00
40.34
3.16
3626
3841
2.125673
GACGCCATGCTGTACCGT
60.126
61.111
0.00
0.00
34.52
4.83
3694
3909
4.934515
ACGCTAGAGGTATGCTAGTTTTC
58.065
43.478
0.00
0.00
38.06
2.29
3695
3910
4.401519
ACGCTAGAGGTATGCTAGTTTTCA
59.598
41.667
0.00
0.00
38.06
2.69
3705
3920
8.329502
AGGTATGCTAGTTTTCAAATCCTACTT
58.670
33.333
0.00
0.00
0.00
2.24
3706
3921
8.613482
GGTATGCTAGTTTTCAAATCCTACTTC
58.387
37.037
0.00
0.00
0.00
3.01
3707
3922
7.631717
ATGCTAGTTTTCAAATCCTACTTCC
57.368
36.000
0.00
0.00
0.00
3.46
3708
3923
5.944007
TGCTAGTTTTCAAATCCTACTTCCC
59.056
40.000
0.00
0.00
0.00
3.97
3725
3942
0.312729
CCCTTTTTGGTACCGCACAC
59.687
55.000
7.57
0.00
0.00
3.82
3771
3990
7.235399
TGTCAATATCCATATTCAGCTACTCCA
59.765
37.037
0.00
0.00
30.91
3.86
3776
3995
4.716784
TCCATATTCAGCTACTCCAACTGT
59.283
41.667
0.00
0.00
33.12
3.55
3779
3998
3.402628
TTCAGCTACTCCAACTGTTCC
57.597
47.619
0.00
0.00
33.12
3.62
3787
4006
5.297029
GCTACTCCAACTGTTCCATAATTCC
59.703
44.000
0.00
0.00
0.00
3.01
3789
4008
5.256474
ACTCCAACTGTTCCATAATTCCTG
58.744
41.667
0.00
0.00
0.00
3.86
3791
4010
5.253330
TCCAACTGTTCCATAATTCCTGTC
58.747
41.667
0.00
0.00
0.00
3.51
3792
4011
4.094887
CCAACTGTTCCATAATTCCTGTCG
59.905
45.833
0.00
0.00
0.00
4.35
3793
4012
4.819105
ACTGTTCCATAATTCCTGTCGA
57.181
40.909
0.00
0.00
0.00
4.20
3794
4013
4.504858
ACTGTTCCATAATTCCTGTCGAC
58.495
43.478
9.11
9.11
0.00
4.20
3795
4014
4.020573
ACTGTTCCATAATTCCTGTCGACA
60.021
41.667
18.88
18.88
0.00
4.35
3796
4015
4.900684
TGTTCCATAATTCCTGTCGACAA
58.099
39.130
20.49
5.15
0.00
3.18
3797
4016
4.935205
TGTTCCATAATTCCTGTCGACAAG
59.065
41.667
20.49
14.18
0.00
3.16
3798
4017
5.175859
GTTCCATAATTCCTGTCGACAAGA
58.824
41.667
20.49
16.57
0.00
3.02
3799
4018
5.414789
TCCATAATTCCTGTCGACAAGAA
57.585
39.130
27.00
27.00
31.65
2.52
3800
4019
5.989477
TCCATAATTCCTGTCGACAAGAAT
58.011
37.500
28.61
28.61
38.32
2.40
3801
4020
6.414732
TCCATAATTCCTGTCGACAAGAATT
58.585
36.000
37.77
37.77
44.56
2.17
3802
4021
7.561251
TCCATAATTCCTGTCGACAAGAATTA
58.439
34.615
38.83
38.83
45.57
1.40
3809
4028
8.012601
ATTCCTGTCGACAAGAATTATGGAACA
61.013
37.037
28.61
12.82
36.86
3.18
3988
4207
1.541588
GCCTTTAAGCTTGACACCCTG
59.458
52.381
9.86
0.00
0.00
4.45
4036
4255
2.050077
GGCAAAACCACGCTGCTC
60.050
61.111
0.00
0.00
38.86
4.26
4519
4738
1.598130
GCAGCAGGACAGAACCGTT
60.598
57.895
0.00
0.00
34.73
4.44
4630
4849
3.004734
ACGACGATGATGATAGCATGTCA
59.995
43.478
0.00
0.00
34.11
3.58
4662
4881
3.339093
GGTTGGGAGGAGGGTGGG
61.339
72.222
0.00
0.00
0.00
4.61
4748
4972
6.654582
TGCGGCAAATGTATGATAGTGATAAT
59.345
34.615
0.00
0.00
0.00
1.28
4897
5121
2.205022
TTGCAATGCTGAGGCTTAGT
57.795
45.000
6.82
0.00
39.59
2.24
4903
5127
4.453819
GCAATGCTGAGGCTTAGTAATAGG
59.546
45.833
8.20
1.21
39.59
2.57
4904
5128
3.753294
TGCTGAGGCTTAGTAATAGGC
57.247
47.619
8.20
0.00
39.59
3.93
4962
5193
6.430000
ACATGGTCACACCTTTTCTTATGTAC
59.570
38.462
0.00
0.00
39.58
2.90
4963
5194
6.182507
TGGTCACACCTTTTCTTATGTACT
57.817
37.500
0.00
0.00
39.58
2.73
4964
5195
7.305813
TGGTCACACCTTTTCTTATGTACTA
57.694
36.000
0.00
0.00
39.58
1.82
4965
5196
7.383687
TGGTCACACCTTTTCTTATGTACTAG
58.616
38.462
0.00
0.00
39.58
2.57
5078
5309
3.578282
CAGGAACCAGCCCAAAATTAACT
59.422
43.478
0.00
0.00
0.00
2.24
5112
5343
3.120649
GGAACAGCTGTTAGCAACTTACG
60.121
47.826
31.20
0.00
45.56
3.18
5115
5346
3.875134
ACAGCTGTTAGCAACTTACGTTT
59.125
39.130
15.25
0.00
45.56
3.60
5182
5414
4.197750
AGAACAGCAAATCTATCAGCCAG
58.802
43.478
0.00
0.00
0.00
4.85
5204
5436
5.471456
CAGACCTTGGATGGATATGCTTTAC
59.529
44.000
0.00
0.00
0.00
2.01
5247
5479
0.394565
CTAGGCCATCCTTCCTTCCG
59.605
60.000
5.01
0.00
40.66
4.30
5282
5514
2.358322
AACAGAAAGGCGAAAAGGGA
57.642
45.000
0.00
0.00
0.00
4.20
5345
5581
4.384647
GGTCAAGGTAAAGGATGAGAGCAT
60.385
45.833
0.00
0.00
37.47
3.79
5348
5584
2.158696
AGGTAAAGGATGAGAGCATGGC
60.159
50.000
0.00
0.00
34.11
4.40
5349
5585
2.158696
GGTAAAGGATGAGAGCATGGCT
60.159
50.000
0.00
0.00
43.88
4.75
5350
5586
2.054232
AAAGGATGAGAGCATGGCTG
57.946
50.000
0.00
0.00
39.88
4.85
5433
5676
4.593634
AGGCTTTTTCCTCTGTACTGTACT
59.406
41.667
17.98
0.00
0.00
2.73
5434
5677
4.691216
GGCTTTTTCCTCTGTACTGTACTG
59.309
45.833
17.98
16.98
0.00
2.74
5435
5678
5.298347
GCTTTTTCCTCTGTACTGTACTGT
58.702
41.667
17.98
10.46
0.00
3.55
5436
5679
6.453092
GCTTTTTCCTCTGTACTGTACTGTA
58.547
40.000
17.98
8.40
0.00
2.74
5437
5680
6.365518
GCTTTTTCCTCTGTACTGTACTGTAC
59.634
42.308
27.19
27.19
42.10
2.90
5455
5698
1.323271
ACAGGTGAGGCGATCGATGT
61.323
55.000
21.57
7.95
0.00
3.06
5456
5699
0.596083
CAGGTGAGGCGATCGATGTC
60.596
60.000
21.57
11.84
0.00
3.06
5604
5850
5.045578
CCTTCCTTCATTCCTTCCTGTAGAA
60.046
44.000
0.00
0.00
0.00
2.10
5606
5852
6.642733
TCCTTCATTCCTTCCTGTAGAATT
57.357
37.500
0.00
0.00
32.82
2.17
5645
5896
1.153823
GAGCCGCTATCGTGTGTGT
60.154
57.895
0.00
0.00
0.00
3.72
5647
5898
1.445410
GCCGCTATCGTGTGTGTGA
60.445
57.895
0.00
0.00
0.00
3.58
5648
5899
1.413767
GCCGCTATCGTGTGTGTGAG
61.414
60.000
0.00
0.00
0.00
3.51
5651
5902
2.324860
CGCTATCGTGTGTGTGAGAAA
58.675
47.619
0.00
0.00
0.00
2.52
5652
5903
2.729360
CGCTATCGTGTGTGTGAGAAAA
59.271
45.455
0.00
0.00
0.00
2.29
5653
5904
3.181540
CGCTATCGTGTGTGTGAGAAAAG
60.182
47.826
0.00
0.00
0.00
2.27
5654
5905
3.123621
GCTATCGTGTGTGTGAGAAAAGG
59.876
47.826
0.00
0.00
0.00
3.11
5655
5906
2.684001
TCGTGTGTGTGAGAAAAGGT
57.316
45.000
0.00
0.00
0.00
3.50
5665
5916
5.065988
TGTGTGAGAAAAGGTAAAACAGAGC
59.934
40.000
0.00
0.00
0.00
4.09
5728
5979
0.608856
TGACGCCATGATTGTTGCCT
60.609
50.000
0.00
0.00
0.00
4.75
5730
5981
0.527565
ACGCCATGATTGTTGCCTTC
59.472
50.000
0.00
0.00
0.00
3.46
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
15
16
3.673338
CAGAGCGTGAGTTTCGATGTTAA
59.327
43.478
0.00
0.00
0.00
2.01
17
18
2.061773
CAGAGCGTGAGTTTCGATGTT
58.938
47.619
0.00
0.00
0.00
2.71
18
19
1.670087
CCAGAGCGTGAGTTTCGATGT
60.670
52.381
0.00
0.00
0.00
3.06
20
21
0.737715
GCCAGAGCGTGAGTTTCGAT
60.738
55.000
0.00
0.00
0.00
3.59
22
23
2.383527
GGCCAGAGCGTGAGTTTCG
61.384
63.158
0.00
0.00
41.24
3.46
84
85
2.062971
ATGTGATCATGAGGTTGGCC
57.937
50.000
0.00
0.00
32.51
5.36
173
175
0.175073
AAGTAGGCTCCCGCTAAACG
59.825
55.000
0.00
0.00
43.15
3.60
174
176
1.653151
CAAGTAGGCTCCCGCTAAAC
58.347
55.000
0.00
0.00
36.09
2.01
175
177
0.539986
CCAAGTAGGCTCCCGCTAAA
59.460
55.000
0.00
0.00
36.09
1.85
188
190
4.447138
TTCTTTTCCTCCTTGCCAAGTA
57.553
40.909
3.37
0.00
0.00
2.24
214
216
3.565902
ACTGGTTTTCTGCTTTGCTAGTC
59.434
43.478
0.00
0.00
0.00
2.59
228
230
2.133641
GCCACCCTGCACTGGTTTT
61.134
57.895
0.28
0.00
32.46
2.43
324
332
6.509656
TCTTTTGACTGTCTTCGTTAGCTTA
58.490
36.000
9.51
0.00
0.00
3.09
337
349
9.196552
GCATTTTAATTAGCTTCTTTTGACTGT
57.803
29.630
0.00
0.00
0.00
3.55
429
459
4.518590
TCATCAACAAATGGTGGTACAGTG
59.481
41.667
0.00
0.00
41.80
3.66
507
537
4.160635
CGCCGCGCAAGGTAAAGG
62.161
66.667
8.75
0.00
38.28
3.11
632
670
2.654877
CTGCCTGCCCAAAGCTTG
59.345
61.111
0.00
0.00
44.23
4.01
635
673
1.757423
TTTTCCTGCCTGCCCAAAGC
61.757
55.000
0.00
0.00
44.14
3.51
641
679
0.540597
ACCTCTTTTTCCTGCCTGCC
60.541
55.000
0.00
0.00
0.00
4.85
642
680
1.332195
AACCTCTTTTTCCTGCCTGC
58.668
50.000
0.00
0.00
0.00
4.85
643
681
4.398319
TCTAAACCTCTTTTTCCTGCCTG
58.602
43.478
0.00
0.00
0.00
4.85
644
682
4.724279
TCTAAACCTCTTTTTCCTGCCT
57.276
40.909
0.00
0.00
0.00
4.75
662
700
2.009051
CAAATGCGTGCTGTGGATCTA
58.991
47.619
0.00
0.00
0.00
1.98
663
701
0.806868
CAAATGCGTGCTGTGGATCT
59.193
50.000
0.00
0.00
0.00
2.75
664
702
0.523072
ACAAATGCGTGCTGTGGATC
59.477
50.000
0.00
0.00
0.00
3.36
665
703
0.961019
AACAAATGCGTGCTGTGGAT
59.039
45.000
0.00
0.00
0.00
3.41
666
704
0.743688
AAACAAATGCGTGCTGTGGA
59.256
45.000
0.00
0.00
0.00
4.02
667
705
1.569708
AAAACAAATGCGTGCTGTGG
58.430
45.000
0.00
0.00
0.00
4.17
668
706
2.602211
TGAAAAACAAATGCGTGCTGTG
59.398
40.909
0.00
0.00
0.00
3.66
669
707
2.886081
TGAAAAACAAATGCGTGCTGT
58.114
38.095
0.00
0.00
0.00
4.40
670
708
4.448005
GAATGAAAAACAAATGCGTGCTG
58.552
39.130
0.00
0.00
0.00
4.41
671
709
3.182173
CGAATGAAAAACAAATGCGTGCT
59.818
39.130
0.00
0.00
0.00
4.40
672
710
3.060607
ACGAATGAAAAACAAATGCGTGC
60.061
39.130
0.00
0.00
0.00
5.34
674
712
5.398122
CACTACGAATGAAAAACAAATGCGT
59.602
36.000
0.00
0.00
0.00
5.24
675
713
5.164196
CCACTACGAATGAAAAACAAATGCG
60.164
40.000
0.00
0.00
0.00
4.73
677
715
6.442952
TCCCACTACGAATGAAAAACAAATG
58.557
36.000
0.00
0.00
0.00
2.32
678
716
6.642707
TCCCACTACGAATGAAAAACAAAT
57.357
33.333
0.00
0.00
0.00
2.32
680
718
5.563867
GCATCCCACTACGAATGAAAAACAA
60.564
40.000
0.00
0.00
0.00
2.83
681
719
4.083003
GCATCCCACTACGAATGAAAAACA
60.083
41.667
0.00
0.00
0.00
2.83
682
720
4.412207
GCATCCCACTACGAATGAAAAAC
58.588
43.478
0.00
0.00
0.00
2.43
683
721
3.442273
GGCATCCCACTACGAATGAAAAA
59.558
43.478
0.00
0.00
0.00
1.94
684
722
3.013921
GGCATCCCACTACGAATGAAAA
58.986
45.455
0.00
0.00
0.00
2.29
685
723
2.026729
TGGCATCCCACTACGAATGAAA
60.027
45.455
0.00
0.00
35.79
2.69
686
724
1.557371
TGGCATCCCACTACGAATGAA
59.443
47.619
0.00
0.00
35.79
2.57
687
725
1.199615
TGGCATCCCACTACGAATGA
58.800
50.000
0.00
0.00
35.79
2.57
688
726
2.036958
TTGGCATCCCACTACGAATG
57.963
50.000
0.00
0.00
41.97
2.67
689
727
2.643551
CTTTGGCATCCCACTACGAAT
58.356
47.619
0.00
0.00
41.97
3.34
693
731
1.376609
CCGCTTTGGCATCCCACTAC
61.377
60.000
0.00
0.00
41.97
2.73
739
787
4.335315
TCTCTTTTGCTTCTTTTCTTCGCA
59.665
37.500
0.00
0.00
0.00
5.10
744
792
4.576463
TCGCTTCTCTTTTGCTTCTTTTCT
59.424
37.500
0.00
0.00
0.00
2.52
766
814
0.179189
CCCGAATCTGCTTTGCGTTC
60.179
55.000
0.00
0.00
0.00
3.95
937
993
2.093235
GGAGGGGAGAGAGTGTGAATTG
60.093
54.545
0.00
0.00
0.00
2.32
1029
1085
1.069204
AGAGAGCACGCACAAGAAGAA
59.931
47.619
0.00
0.00
0.00
2.52
1487
1574
0.740868
CGGTGATGAGGAACGCACAT
60.741
55.000
0.00
0.00
43.58
3.21
1490
1577
2.264480
CCGGTGATGAGGAACGCA
59.736
61.111
0.00
0.00
45.75
5.24
1802
1889
1.789751
CGTGTAGTACGCGTCCTCA
59.210
57.895
24.53
7.48
46.92
3.86
2066
2153
2.601067
TGCTTGACGTCGGGGGTA
60.601
61.111
11.62
0.00
0.00
3.69
2201
2291
1.842381
GAGGAGGTGGTGGTCTTGGG
61.842
65.000
0.00
0.00
0.00
4.12
2432
2522
1.149174
CACCTTGTCCCAGTGCAGT
59.851
57.895
0.00
0.00
0.00
4.40
2527
2621
5.312054
CGTATACGGATAGAGAGCGTTTAC
58.688
45.833
17.61
0.00
35.37
2.01
2602
2696
1.735973
CGCCTCGATCATGTCCTCA
59.264
57.895
0.00
0.00
0.00
3.86
2785
2879
3.573772
CTCACCGTCCAAGAGCGCA
62.574
63.158
11.47
0.00
0.00
6.09
2792
2886
1.374560
CACAAACACTCACCGTCCAA
58.625
50.000
0.00
0.00
0.00
3.53
2819
2913
9.761504
TGAGCTGAAAATTTAATCAAAATCACA
57.238
25.926
0.00
0.00
36.76
3.58
2841
2972
2.231964
TGCCAATCAGGTCAAAATGAGC
59.768
45.455
1.46
1.46
44.62
4.26
2842
2973
4.730949
ATGCCAATCAGGTCAAAATGAG
57.269
40.909
0.00
0.00
40.61
2.90
2843
2974
4.773674
AGAATGCCAATCAGGTCAAAATGA
59.226
37.500
0.00
0.00
40.61
2.57
2844
2975
5.080969
AGAATGCCAATCAGGTCAAAATG
57.919
39.130
0.00
0.00
40.61
2.32
2845
2976
6.855763
TTAGAATGCCAATCAGGTCAAAAT
57.144
33.333
0.00
0.00
40.61
1.82
2850
2981
4.943705
TCAGTTTAGAATGCCAATCAGGTC
59.056
41.667
0.00
0.00
40.61
3.85
2859
2990
1.403323
GCTGGCTCAGTTTAGAATGCC
59.597
52.381
0.00
0.00
40.62
4.40
2866
2997
4.040461
ACAGTAGAAAGCTGGCTCAGTTTA
59.960
41.667
5.08
0.00
34.01
2.01
2867
2998
3.181450
ACAGTAGAAAGCTGGCTCAGTTT
60.181
43.478
0.00
2.09
36.52
2.66
2870
3001
2.758736
ACAGTAGAAAGCTGGCTCAG
57.241
50.000
0.00
0.00
38.22
3.35
2874
3007
1.797025
ACGAACAGTAGAAAGCTGGC
58.203
50.000
0.00
0.00
38.22
4.85
2912
3048
9.389755
ACAATTTAAGGTTTGCAAACAAATAGT
57.610
25.926
35.95
22.23
46.93
2.12
2913
3049
9.649024
CACAATTTAAGGTTTGCAAACAAATAG
57.351
29.630
35.95
22.32
46.93
1.73
2914
3050
8.616076
CCACAATTTAAGGTTTGCAAACAAATA
58.384
29.630
35.95
24.11
46.93
1.40
2915
3051
7.337942
TCCACAATTTAAGGTTTGCAAACAAAT
59.662
29.630
35.95
28.92
46.93
2.32
2938
3144
1.202794
TCACAATCAAGCACAGCTCCA
60.203
47.619
0.00
0.00
38.25
3.86
2943
3149
7.783090
AGATACTAATCACAATCAAGCACAG
57.217
36.000
0.00
0.00
34.28
3.66
2945
3151
7.439356
TGCTAGATACTAATCACAATCAAGCAC
59.561
37.037
0.00
0.00
34.28
4.40
3019
3233
6.215121
TCATTGAAAGCAAAACACGAATCAT
58.785
32.000
0.00
0.00
37.59
2.45
3146
3360
6.899631
AGCCATTTTCTTCCCTTATTGATTCT
59.100
34.615
0.00
0.00
0.00
2.40
3156
3370
1.340114
GGTCGAGCCATTTTCTTCCCT
60.340
52.381
2.39
0.00
37.17
4.20
3182
3396
7.074653
TGTTCACAACCTTCCTACTAGAAAT
57.925
36.000
0.00
0.00
0.00
2.17
3223
3437
9.710900
ATAATGGAAGAAAGGAAAAACAATCAC
57.289
29.630
0.00
0.00
0.00
3.06
3290
3505
8.632679
TGTTTGATTCAGAGAGCAAATTTTAGT
58.367
29.630
0.00
0.00
33.43
2.24
3316
3531
6.620877
TTATGTGTAGAAATCAGGGTGAGT
57.379
37.500
0.00
0.00
0.00
3.41
3317
3532
6.422100
CGATTATGTGTAGAAATCAGGGTGAG
59.578
42.308
0.00
0.00
31.37
3.51
3368
3583
4.454847
ACAGAGAAATGATGTGAACAGCAG
59.545
41.667
7.52
0.00
46.01
4.24
3578
3793
3.964688
TGAAGGCGAAAGGTATATCCAGA
59.035
43.478
0.00
0.00
39.02
3.86
3626
3841
3.616956
ATCTCAGTCTCGAAATTGGCA
57.383
42.857
0.00
0.00
0.00
4.92
3694
3909
6.071560
GGTACCAAAAAGGGAAGTAGGATTTG
60.072
42.308
7.15
0.00
43.89
2.32
3695
3910
6.014647
GGTACCAAAAAGGGAAGTAGGATTT
58.985
40.000
7.15
0.00
43.89
2.17
3705
3920
0.183014
TGTGCGGTACCAAAAAGGGA
59.817
50.000
13.54
0.00
43.89
4.20
3706
3921
0.312729
GTGTGCGGTACCAAAAAGGG
59.687
55.000
13.54
0.00
43.89
3.95
3707
3922
0.312729
GGTGTGCGGTACCAAAAAGG
59.687
55.000
13.54
0.00
45.67
3.11
3708
3923
0.312729
GGGTGTGCGGTACCAAAAAG
59.687
55.000
13.54
0.00
40.03
2.27
3725
3942
5.939883
TGACATTTGATACTCAAGTCAAGGG
59.060
40.000
8.60
0.00
38.08
3.95
3746
3965
7.615403
TGGAGTAGCTGAATATGGATATTGAC
58.385
38.462
0.00
0.00
33.37
3.18
3776
3995
5.414789
TCTTGTCGACAGGAATTATGGAA
57.585
39.130
26.09
3.01
0.00
3.53
3787
4006
5.869344
TCTGTTCCATAATTCTTGTCGACAG
59.131
40.000
19.11
12.86
33.85
3.51
3789
4008
5.292101
CCTCTGTTCCATAATTCTTGTCGAC
59.708
44.000
9.11
9.11
0.00
4.20
3791
4010
4.572389
CCCTCTGTTCCATAATTCTTGTCG
59.428
45.833
0.00
0.00
0.00
4.35
3792
4011
5.745227
TCCCTCTGTTCCATAATTCTTGTC
58.255
41.667
0.00
0.00
0.00
3.18
3793
4012
5.251700
ACTCCCTCTGTTCCATAATTCTTGT
59.748
40.000
0.00
0.00
0.00
3.16
3794
4013
5.749462
ACTCCCTCTGTTCCATAATTCTTG
58.251
41.667
0.00
0.00
0.00
3.02
3795
4014
7.698163
ATACTCCCTCTGTTCCATAATTCTT
57.302
36.000
0.00
0.00
0.00
2.52
3796
4015
7.348274
TCAATACTCCCTCTGTTCCATAATTCT
59.652
37.037
0.00
0.00
0.00
2.40
3797
4016
7.509546
TCAATACTCCCTCTGTTCCATAATTC
58.490
38.462
0.00
0.00
0.00
2.17
3798
4017
7.451731
TCAATACTCCCTCTGTTCCATAATT
57.548
36.000
0.00
0.00
0.00
1.40
3799
4018
7.092444
TGTTCAATACTCCCTCTGTTCCATAAT
60.092
37.037
0.00
0.00
0.00
1.28
3800
4019
6.214615
TGTTCAATACTCCCTCTGTTCCATAA
59.785
38.462
0.00
0.00
0.00
1.90
3801
4020
5.724370
TGTTCAATACTCCCTCTGTTCCATA
59.276
40.000
0.00
0.00
0.00
2.74
3802
4021
4.536090
TGTTCAATACTCCCTCTGTTCCAT
59.464
41.667
0.00
0.00
0.00
3.41
3809
4028
3.846588
ACCACATGTTCAATACTCCCTCT
59.153
43.478
0.00
0.00
0.00
3.69
3988
4207
2.431601
ACGTCTGCGAGCTTGAGC
60.432
61.111
4.70
3.85
42.00
4.26
4036
4255
5.261209
TCATTTCTTGGACAACAAAGTGG
57.739
39.130
0.00
0.00
38.91
4.00
4072
4291
6.015856
TGGTATTTTCCTTTTCAGATTTCGCA
60.016
34.615
0.00
0.00
0.00
5.10
4646
4865
2.204090
TCCCACCCTCCTCCCAAC
60.204
66.667
0.00
0.00
0.00
3.77
4648
4867
4.024984
CCTCCCACCCTCCTCCCA
62.025
72.222
0.00
0.00
0.00
4.37
4652
4871
3.615811
TGCTCCTCCCACCCTCCT
61.616
66.667
0.00
0.00
0.00
3.69
4653
4872
3.086600
CTGCTCCTCCCACCCTCC
61.087
72.222
0.00
0.00
0.00
4.30
4655
4874
1.083706
ATTCTGCTCCTCCCACCCT
59.916
57.895
0.00
0.00
0.00
4.34
4656
4875
1.225704
CATTCTGCTCCTCCCACCC
59.774
63.158
0.00
0.00
0.00
4.61
4662
4881
4.445452
TGCAAAATTCATTCTGCTCCTC
57.555
40.909
0.00
0.00
35.78
3.71
4723
4947
3.802866
TCACTATCATACATTTGCCGCA
58.197
40.909
0.00
0.00
0.00
5.69
4748
4972
5.818857
GTCCCGAGGTTAAATATGTGCTTAA
59.181
40.000
0.00
0.00
0.00
1.85
4897
5121
3.706594
ACTAGTGAAGCAGCAGCCTATTA
59.293
43.478
0.00
0.00
43.56
0.98
4903
5127
3.791245
AGATAACTAGTGAAGCAGCAGC
58.209
45.455
0.00
0.00
42.56
5.25
4904
5128
4.981674
GCTAGATAACTAGTGAAGCAGCAG
59.018
45.833
8.64
0.00
45.49
4.24
4905
5129
4.402474
TGCTAGATAACTAGTGAAGCAGCA
59.598
41.667
14.35
14.35
45.49
4.41
4962
5193
8.933807
CCACTACATGAATCAGCATAATTCTAG
58.066
37.037
0.00
0.00
34.80
2.43
4963
5194
7.879677
CCCACTACATGAATCAGCATAATTCTA
59.120
37.037
0.00
0.00
34.80
2.10
4964
5195
6.713903
CCCACTACATGAATCAGCATAATTCT
59.286
38.462
0.00
0.00
34.80
2.40
4965
5196
6.072286
CCCCACTACATGAATCAGCATAATTC
60.072
42.308
0.00
0.00
34.40
2.17
4973
5204
2.774234
AGTCCCCCACTACATGAATCAG
59.226
50.000
0.00
0.00
31.37
2.90
5090
5321
3.120649
CGTAAGTTGCTAACAGCTGTTCC
60.121
47.826
34.29
25.09
42.97
3.62
5112
5343
6.002082
AGAGGAAATTGTACAGTGGGTAAAC
58.998
40.000
0.00
0.00
32.72
2.01
5115
5346
5.836024
AAGAGGAAATTGTACAGTGGGTA
57.164
39.130
0.00
0.00
0.00
3.69
5182
5414
5.376625
TGTAAAGCATATCCATCCAAGGTC
58.623
41.667
0.00
0.00
0.00
3.85
5223
5455
2.965562
AGGAAGGATGGCCTAGTACTC
58.034
52.381
3.32
0.00
46.28
2.59
5247
5479
6.481644
CCTTTCTGTTACTTGCAGAGATATCC
59.518
42.308
0.00
0.00
42.95
2.59
5433
5676
0.678684
TCGATCGCCTCACCTGTACA
60.679
55.000
11.09
0.00
0.00
2.90
5434
5677
0.669077
ATCGATCGCCTCACCTGTAC
59.331
55.000
11.09
0.00
0.00
2.90
5435
5678
0.668535
CATCGATCGCCTCACCTGTA
59.331
55.000
11.09
0.00
0.00
2.74
5436
5679
1.323271
ACATCGATCGCCTCACCTGT
61.323
55.000
11.09
2.35
0.00
4.00
5437
5680
0.596083
GACATCGATCGCCTCACCTG
60.596
60.000
11.09
1.75
0.00
4.00
5455
5698
0.462581
GGGCATGCTCAAGTGATCGA
60.463
55.000
18.92
0.00
0.00
3.59
5456
5699
0.463295
AGGGCATGCTCAAGTGATCG
60.463
55.000
22.09
0.00
0.00
3.69
5604
5850
3.961480
TCACTTCCATCACGTCTCAAT
57.039
42.857
0.00
0.00
0.00
2.57
5606
5852
3.258123
TCATTCACTTCCATCACGTCTCA
59.742
43.478
0.00
0.00
0.00
3.27
5645
5896
4.699637
TCGCTCTGTTTTACCTTTTCTCA
58.300
39.130
0.00
0.00
0.00
3.27
5647
5898
4.023963
GCTTCGCTCTGTTTTACCTTTTCT
60.024
41.667
0.00
0.00
0.00
2.52
5648
5899
4.219802
GCTTCGCTCTGTTTTACCTTTTC
58.780
43.478
0.00
0.00
0.00
2.29
5651
5902
2.846193
TGCTTCGCTCTGTTTTACCTT
58.154
42.857
0.00
0.00
0.00
3.50
5652
5903
2.543777
TGCTTCGCTCTGTTTTACCT
57.456
45.000
0.00
0.00
0.00
3.08
5653
5904
3.555518
CTTTGCTTCGCTCTGTTTTACC
58.444
45.455
0.00
0.00
0.00
2.85
5654
5905
3.555518
CCTTTGCTTCGCTCTGTTTTAC
58.444
45.455
0.00
0.00
0.00
2.01
5655
5906
2.552315
CCCTTTGCTTCGCTCTGTTTTA
59.448
45.455
0.00
0.00
0.00
1.52
5665
5916
0.318120
ATGCCAAACCCTTTGCTTCG
59.682
50.000
0.00
0.00
39.31
3.79
5678
5929
3.227614
CATCCATCCTTGATGATGCCAA
58.772
45.455
5.67
0.00
42.09
4.52
5728
5979
4.443457
CCAGAGGAGAATTATGAAGGCGAA
60.443
45.833
0.00
0.00
0.00
4.70
5730
5981
3.070159
TCCAGAGGAGAATTATGAAGGCG
59.930
47.826
0.00
0.00
0.00
5.52
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.