Multiple sequence alignment - TraesCS4D01G257500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G257500 chr4D 100.000 3188 0 0 1 3188 427266938 427270125 0.000000e+00 5888.0
1 TraesCS4D01G257500 chr4D 95.645 1745 44 15 1472 3188 426901236 426902976 0.000000e+00 2772.0
2 TraesCS4D01G257500 chr4D 82.433 1611 169 45 877 2449 428558397 428556863 0.000000e+00 1303.0
3 TraesCS4D01G257500 chr4D 83.987 1274 129 25 954 2193 427322631 427323863 0.000000e+00 1153.0
4 TraesCS4D01G257500 chr4D 84.109 1246 133 31 954 2155 428397918 428396694 0.000000e+00 1144.0
5 TraesCS4D01G257500 chr4D 83.688 1269 134 24 954 2189 427014488 427015716 0.000000e+00 1129.0
6 TraesCS4D01G257500 chr4D 78.901 1602 228 56 958 2497 426870273 426871826 0.000000e+00 985.0
7 TraesCS4D01G257500 chr4D 99.044 523 5 0 957 1479 426900454 426900976 0.000000e+00 939.0
8 TraesCS4D01G257500 chr4D 92.917 240 11 4 245 478 426899660 426899899 8.470000e-91 344.0
9 TraesCS4D01G257500 chr4D 87.459 303 19 12 628 923 426900166 426900456 6.590000e-87 331.0
10 TraesCS4D01G257500 chr4D 93.452 168 10 1 2577 2743 326380032 326379865 6.830000e-62 248.0
11 TraesCS4D01G257500 chr4D 92.414 145 10 1 2739 2883 427022000 427022143 4.170000e-49 206.0
12 TraesCS4D01G257500 chr4D 81.070 243 34 10 2219 2454 427323860 427324097 1.950000e-42 183.0
13 TraesCS4D01G257500 chr4D 91.667 120 10 0 2231 2350 427021585 427021704 1.970000e-37 167.0
14 TraesCS4D01G257500 chr4D 97.561 41 1 0 1 41 426899638 426899678 1.590000e-08 71.3
15 TraesCS4D01G257500 chr4D 90.566 53 4 1 2820 2871 427324255 427324307 5.710000e-08 69.4
16 TraesCS4D01G257500 chr4A 92.264 1577 81 16 631 2189 38675960 38674407 0.000000e+00 2198.0
17 TraesCS4D01G257500 chr4A 85.354 1270 136 19 954 2189 37999973 38001226 0.000000e+00 1269.0
18 TraesCS4D01G257500 chr4A 83.951 1215 124 21 1015 2189 37833678 37834861 0.000000e+00 1098.0
19 TraesCS4D01G257500 chr4A 83.951 1215 124 21 1015 2189 38663343 38662160 0.000000e+00 1098.0
20 TraesCS4D01G257500 chr4A 78.743 334 48 19 2192 2506 38681536 38681207 5.390000e-48 202.0
21 TraesCS4D01G257500 chr4A 81.648 267 24 18 2247 2497 37834995 37835252 6.980000e-47 198.0
22 TraesCS4D01G257500 chr4A 91.919 99 7 1 2774 2871 38001748 38001846 1.540000e-28 137.0
23 TraesCS4D01G257500 chr4A 93.407 91 6 0 248 338 38680158 38680068 5.550000e-28 135.0
24 TraesCS4D01G257500 chr4A 85.833 120 10 2 2739 2858 38661014 38660902 1.550000e-23 121.0
25 TraesCS4D01G257500 chr4A 98.039 51 1 0 2506 2556 38674020 38673970 4.380000e-14 89.8
26 TraesCS4D01G257500 chr4A 100.000 39 0 0 2845 2883 38659766 38659728 4.410000e-09 73.1
27 TraesCS4D01G257500 chr4A 93.750 48 3 0 2808 2855 38680916 38680869 4.410000e-09 73.1
28 TraesCS4D01G257500 chr4B 91.848 1472 51 21 642 2086 522676913 522678342 0.000000e+00 1989.0
29 TraesCS4D01G257500 chr4B 82.611 1570 177 48 954 2454 524900887 524899345 0.000000e+00 1299.0
30 TraesCS4D01G257500 chr4B 81.447 1590 182 56 954 2497 522682192 522683714 0.000000e+00 1197.0
31 TraesCS4D01G257500 chr4B 78.380 1494 217 47 955 2380 522669423 522670878 0.000000e+00 872.0
32 TraesCS4D01G257500 chr4B 79.030 1278 193 37 958 2191 527644819 527643573 0.000000e+00 806.0
33 TraesCS4D01G257500 chr4B 90.288 278 14 4 245 517 522676649 522676918 5.060000e-93 351.0
34 TraesCS4D01G257500 chr4B 95.000 220 11 0 2219 2438 522684156 522684375 2.350000e-91 346.0
35 TraesCS4D01G257500 chr4B 90.210 143 12 1 2743 2883 522678875 522679017 5.430000e-43 185.0
36 TraesCS4D01G257500 chr4B 94.382 89 5 0 2354 2442 522678528 522678616 1.540000e-28 137.0
37 TraesCS4D01G257500 chr4B 84.328 134 15 4 2247 2380 527748172 527748045 3.340000e-25 126.0
38 TraesCS4D01G257500 chr4B 98.113 53 1 0 2506 2558 522678709 522678761 3.390000e-15 93.5
39 TraesCS4D01G257500 chr4B 97.561 41 1 0 1 41 522676627 522676667 1.590000e-08 71.3
40 TraesCS4D01G257500 chr4B 100.000 32 0 0 2822 2853 522679053 522679084 3.430000e-05 60.2
41 TraesCS4D01G257500 chrUn 90.811 185 14 3 2560 2743 86671493 86671311 8.830000e-61 244.0
42 TraesCS4D01G257500 chrUn 83.505 194 25 4 40 228 237860194 237860003 1.180000e-39 174.0
43 TraesCS4D01G257500 chrUn 83.505 194 25 4 40 228 297373081 297373272 1.180000e-39 174.0
44 TraesCS4D01G257500 chr7B 91.620 179 12 3 2560 2737 548034702 548034878 8.830000e-61 244.0
45 TraesCS4D01G257500 chr7B 91.061 179 13 3 2560 2737 569787988 569788164 4.110000e-59 239.0
46 TraesCS4D01G257500 chr7B 90.503 179 14 3 2560 2737 484995176 484995352 1.910000e-57 233.0
47 TraesCS4D01G257500 chr2B 90.811 185 14 3 2560 2743 62601155 62600973 8.830000e-61 244.0
48 TraesCS4D01G257500 chr6D 91.954 174 13 1 2574 2746 438321731 438321904 3.180000e-60 243.0
49 TraesCS4D01G257500 chr1B 90.217 184 15 3 2560 2743 446426533 446426353 1.480000e-58 237.0
50 TraesCS4D01G257500 chr3B 83.505 194 25 4 40 228 789337086 789336895 1.180000e-39 174.0
51 TraesCS4D01G257500 chr3B 83.505 194 25 4 40 228 789372503 789372312 1.180000e-39 174.0
52 TraesCS4D01G257500 chr7A 83.871 186 25 3 39 219 26696800 26696615 4.230000e-39 172.0
53 TraesCS4D01G257500 chr1A 82.212 208 28 6 39 238 587717868 587717662 1.520000e-38 171.0
54 TraesCS4D01G257500 chr1D 82.990 194 22 6 39 225 436708113 436707924 7.070000e-37 165.0
55 TraesCS4D01G257500 chr1D 82.979 188 23 8 37 219 449984295 449984478 9.150000e-36 161.0
56 TraesCS4D01G257500 chr7D 81.773 203 25 6 33 226 38660284 38660085 3.290000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G257500 chr4D 427266938 427270125 3187 False 5888.000000 5888 100.000000 1 3188 1 chr4D.!!$F3 3187
1 TraesCS4D01G257500 chr4D 428556863 428558397 1534 True 1303.000000 1303 82.433000 877 2449 1 chr4D.!!$R3 1572
2 TraesCS4D01G257500 chr4D 428396694 428397918 1224 True 1144.000000 1144 84.109000 954 2155 1 chr4D.!!$R2 1201
3 TraesCS4D01G257500 chr4D 427014488 427015716 1228 False 1129.000000 1129 83.688000 954 2189 1 chr4D.!!$F2 1235
4 TraesCS4D01G257500 chr4D 426870273 426871826 1553 False 985.000000 985 78.901000 958 2497 1 chr4D.!!$F1 1539
5 TraesCS4D01G257500 chr4D 426899638 426902976 3338 False 891.460000 2772 94.525200 1 3188 5 chr4D.!!$F4 3187
6 TraesCS4D01G257500 chr4D 427322631 427324307 1676 False 468.466667 1153 85.207667 954 2871 3 chr4D.!!$F6 1917
7 TraesCS4D01G257500 chr4A 38673970 38675960 1990 True 1143.900000 2198 95.151500 631 2556 2 chr4A.!!$R2 1925
8 TraesCS4D01G257500 chr4A 37999973 38001846 1873 False 703.000000 1269 88.636500 954 2871 2 chr4A.!!$F2 1917
9 TraesCS4D01G257500 chr4A 37833678 37835252 1574 False 648.000000 1098 82.799500 1015 2497 2 chr4A.!!$F1 1482
10 TraesCS4D01G257500 chr4A 38659728 38663343 3615 True 430.700000 1098 89.928000 1015 2883 3 chr4A.!!$R1 1868
11 TraesCS4D01G257500 chr4B 524899345 524900887 1542 True 1299.000000 1299 82.611000 954 2454 1 chr4B.!!$R1 1500
12 TraesCS4D01G257500 chr4B 522669423 522670878 1455 False 872.000000 872 78.380000 955 2380 1 chr4B.!!$F1 1425
13 TraesCS4D01G257500 chr4B 527643573 527644819 1246 True 806.000000 806 79.030000 958 2191 1 chr4B.!!$R2 1233
14 TraesCS4D01G257500 chr4B 522676627 522684375 7748 False 492.222222 1989 93.205444 1 2883 9 chr4B.!!$F2 2882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.034574 AGGCACAGTCAACACCAACA 60.035 50.0 0.0 0.0 0.0 3.33 F
148 149 0.100503 GGCACAGTCAACACCAACAC 59.899 55.0 0.0 0.0 0.0 3.32 F
159 160 0.109551 CACCAACACACGCACACAAA 60.110 50.0 0.0 0.0 0.0 2.83 F
241 242 0.112412 AAAACCCCAAGCGATCCACT 59.888 50.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 2449 0.823356 GTGAGGAGCCCTTGCAACAA 60.823 55.000 0.00 0.0 41.13 2.83 R
1992 2478 1.005037 TGCCGTCAATCGCTTGTCT 60.005 52.632 0.00 0.0 38.35 3.41 R
2124 7597 5.946942 TGAGTAGATTCTTCTCTGGCATT 57.053 39.130 17.83 0.0 30.83 3.56 R
2327 8522 7.093596 ACACACATCTCTGATTCTCTGAACATA 60.094 37.037 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.734538 ACTGTGTGTTGTTTCTTATTTTTCG 57.265 32.000 0.00 0.00 0.00 3.46
45 46 7.531716 ACTGTGTGTTGTTTCTTATTTTTCGA 58.468 30.769 0.00 0.00 0.00 3.71
46 47 7.483691 ACTGTGTGTTGTTTCTTATTTTTCGAC 59.516 33.333 0.00 0.00 0.00 4.20
47 48 7.306213 TGTGTGTTGTTTCTTATTTTTCGACA 58.694 30.769 0.00 0.00 0.00 4.35
48 49 7.808381 TGTGTGTTGTTTCTTATTTTTCGACAA 59.192 29.630 0.00 0.00 0.00 3.18
49 50 8.640291 GTGTGTTGTTTCTTATTTTTCGACAAA 58.360 29.630 0.00 0.00 0.00 2.83
50 51 8.855279 TGTGTTGTTTCTTATTTTTCGACAAAG 58.145 29.630 2.86 0.00 0.00 2.77
51 52 8.318167 GTGTTGTTTCTTATTTTTCGACAAAGG 58.682 33.333 2.86 0.00 0.00 3.11
52 53 8.244802 TGTTGTTTCTTATTTTTCGACAAAGGA 58.755 29.630 2.86 0.00 0.00 3.36
53 54 9.244799 GTTGTTTCTTATTTTTCGACAAAGGAT 57.755 29.630 2.86 0.00 0.00 3.24
54 55 8.795786 TGTTTCTTATTTTTCGACAAAGGATG 57.204 30.769 2.86 0.00 0.00 3.51
55 56 7.865385 TGTTTCTTATTTTTCGACAAAGGATGG 59.135 33.333 2.86 0.00 0.00 3.51
56 57 7.753309 TTCTTATTTTTCGACAAAGGATGGA 57.247 32.000 2.86 0.00 0.00 3.41
57 58 7.938140 TCTTATTTTTCGACAAAGGATGGAT 57.062 32.000 2.86 0.00 0.00 3.41
58 59 8.348285 TCTTATTTTTCGACAAAGGATGGATT 57.652 30.769 2.86 0.00 0.00 3.01
59 60 8.802267 TCTTATTTTTCGACAAAGGATGGATTT 58.198 29.630 2.86 0.00 0.00 2.17
60 61 9.423061 CTTATTTTTCGACAAAGGATGGATTTT 57.577 29.630 2.86 0.00 0.00 1.82
63 64 9.942850 ATTTTTCGACAAAGGATGGATTTTATT 57.057 25.926 2.86 0.00 0.00 1.40
66 67 7.259290 TCGACAAAGGATGGATTTTATTAGC 57.741 36.000 0.00 0.00 0.00 3.09
67 68 7.054124 TCGACAAAGGATGGATTTTATTAGCT 58.946 34.615 0.00 0.00 0.00 3.32
68 69 7.226720 TCGACAAAGGATGGATTTTATTAGCTC 59.773 37.037 0.00 0.00 0.00 4.09
69 70 7.012327 CGACAAAGGATGGATTTTATTAGCTCA 59.988 37.037 0.00 0.00 0.00 4.26
70 71 8.593945 ACAAAGGATGGATTTTATTAGCTCAA 57.406 30.769 0.00 0.00 0.00 3.02
71 72 9.034800 ACAAAGGATGGATTTTATTAGCTCAAA 57.965 29.630 0.00 0.00 0.00 2.69
72 73 9.525409 CAAAGGATGGATTTTATTAGCTCAAAG 57.475 33.333 0.00 0.00 0.00 2.77
73 74 8.829373 AAGGATGGATTTTATTAGCTCAAAGT 57.171 30.769 0.00 0.00 0.00 2.66
74 75 8.230472 AGGATGGATTTTATTAGCTCAAAGTG 57.770 34.615 0.00 0.00 0.00 3.16
75 76 8.055181 AGGATGGATTTTATTAGCTCAAAGTGA 58.945 33.333 0.00 0.00 0.00 3.41
76 77 8.686334 GGATGGATTTTATTAGCTCAAAGTGAA 58.314 33.333 0.00 0.00 0.00 3.18
78 79 9.860898 ATGGATTTTATTAGCTCAAAGTGAAAC 57.139 29.630 0.00 0.00 0.00 2.78
79 80 8.855110 TGGATTTTATTAGCTCAAAGTGAAACA 58.145 29.630 0.00 0.00 41.43 2.83
80 81 9.860898 GGATTTTATTAGCTCAAAGTGAAACAT 57.139 29.630 0.00 0.00 41.43 2.71
87 88 6.566197 AGCTCAAAGTGAAACATTAAGAGG 57.434 37.500 0.00 0.00 41.43 3.69
88 89 6.299141 AGCTCAAAGTGAAACATTAAGAGGA 58.701 36.000 0.00 0.00 41.43 3.71
89 90 6.944862 AGCTCAAAGTGAAACATTAAGAGGAT 59.055 34.615 0.00 0.00 41.43 3.24
90 91 8.103305 AGCTCAAAGTGAAACATTAAGAGGATA 58.897 33.333 0.00 0.00 41.43 2.59
91 92 8.178313 GCTCAAAGTGAAACATTAAGAGGATAC 58.822 37.037 0.00 0.00 41.43 2.24
92 93 9.219603 CTCAAAGTGAAACATTAAGAGGATACA 57.780 33.333 0.00 0.00 41.43 2.29
93 94 9.567776 TCAAAGTGAAACATTAAGAGGATACAA 57.432 29.630 0.00 0.00 41.43 2.41
96 97 8.918202 AGTGAAACATTAAGAGGATACAAACA 57.082 30.769 0.00 0.00 41.43 2.83
97 98 9.520515 AGTGAAACATTAAGAGGATACAAACAT 57.479 29.630 0.00 0.00 41.43 2.71
103 104 9.838339 ACATTAAGAGGATACAAACATAAGGAG 57.162 33.333 0.00 0.00 41.41 3.69
104 105 8.778358 CATTAAGAGGATACAAACATAAGGAGC 58.222 37.037 0.00 0.00 41.41 4.70
105 106 5.957771 AGAGGATACAAACATAAGGAGCA 57.042 39.130 0.00 0.00 41.41 4.26
106 107 5.675538 AGAGGATACAAACATAAGGAGCAC 58.324 41.667 0.00 0.00 41.41 4.40
107 108 5.189736 AGAGGATACAAACATAAGGAGCACA 59.810 40.000 0.00 0.00 41.41 4.57
108 109 5.186198 AGGATACAAACATAAGGAGCACAC 58.814 41.667 0.00 0.00 41.41 3.82
109 110 4.941263 GGATACAAACATAAGGAGCACACA 59.059 41.667 0.00 0.00 0.00 3.72
110 111 5.590259 GGATACAAACATAAGGAGCACACAT 59.410 40.000 0.00 0.00 0.00 3.21
111 112 6.238484 GGATACAAACATAAGGAGCACACATC 60.238 42.308 0.00 0.00 0.00 3.06
112 113 3.758554 ACAAACATAAGGAGCACACATCC 59.241 43.478 0.00 0.00 37.07 3.51
113 114 2.315925 ACATAAGGAGCACACATCCG 57.684 50.000 0.00 0.00 42.02 4.18
114 115 1.134401 ACATAAGGAGCACACATCCGG 60.134 52.381 0.00 0.00 42.02 5.14
115 116 0.179045 ATAAGGAGCACACATCCGGC 60.179 55.000 0.00 0.00 42.02 6.13
116 117 2.252072 TAAGGAGCACACATCCGGCC 62.252 60.000 0.00 0.00 42.02 6.13
117 118 4.101448 GGAGCACACATCCGGCCT 62.101 66.667 0.00 0.00 0.00 5.19
118 119 2.512515 GAGCACACATCCGGCCTC 60.513 66.667 0.00 0.00 0.00 4.70
119 120 3.005539 AGCACACATCCGGCCTCT 61.006 61.111 0.00 0.00 0.00 3.69
120 121 2.821366 GCACACATCCGGCCTCTG 60.821 66.667 0.00 0.00 0.00 3.35
121 122 2.821366 CACACATCCGGCCTCTGC 60.821 66.667 0.00 0.00 0.00 4.26
122 123 3.321648 ACACATCCGGCCTCTGCA 61.322 61.111 0.00 0.00 40.13 4.41
123 124 2.191375 CACATCCGGCCTCTGCAT 59.809 61.111 0.00 0.00 40.13 3.96
124 125 1.337384 ACACATCCGGCCTCTGCATA 61.337 55.000 0.00 0.00 40.13 3.14
125 126 0.179048 CACATCCGGCCTCTGCATAA 60.179 55.000 0.00 0.00 40.13 1.90
126 127 0.767375 ACATCCGGCCTCTGCATAAT 59.233 50.000 0.00 0.00 40.13 1.28
127 128 1.143684 ACATCCGGCCTCTGCATAATT 59.856 47.619 0.00 0.00 40.13 1.40
128 129 2.371841 ACATCCGGCCTCTGCATAATTA 59.628 45.455 0.00 0.00 40.13 1.40
129 130 2.839486 TCCGGCCTCTGCATAATTAG 57.161 50.000 0.00 0.00 40.13 1.73
130 131 1.347707 TCCGGCCTCTGCATAATTAGG 59.652 52.381 0.00 0.00 40.13 2.69
136 137 3.813443 CCTCTGCATAATTAGGCACAGT 58.187 45.455 20.13 0.00 38.15 3.55
137 138 3.812053 CCTCTGCATAATTAGGCACAGTC 59.188 47.826 20.13 0.00 38.15 3.51
138 139 4.445453 CTCTGCATAATTAGGCACAGTCA 58.555 43.478 20.13 0.00 38.15 3.41
139 140 4.842574 TCTGCATAATTAGGCACAGTCAA 58.157 39.130 20.13 0.00 38.15 3.18
140 141 4.635765 TCTGCATAATTAGGCACAGTCAAC 59.364 41.667 20.13 0.00 38.15 3.18
141 142 4.331108 TGCATAATTAGGCACAGTCAACA 58.669 39.130 20.13 0.00 38.15 3.33
142 143 4.155826 TGCATAATTAGGCACAGTCAACAC 59.844 41.667 20.13 0.00 38.15 3.32
143 144 4.438744 GCATAATTAGGCACAGTCAACACC 60.439 45.833 16.80 0.00 32.47 4.16
144 145 2.949177 ATTAGGCACAGTCAACACCA 57.051 45.000 0.00 0.00 0.00 4.17
145 146 2.719531 TTAGGCACAGTCAACACCAA 57.280 45.000 0.00 0.00 0.00 3.67
146 147 1.961793 TAGGCACAGTCAACACCAAC 58.038 50.000 0.00 0.00 0.00 3.77
147 148 0.034574 AGGCACAGTCAACACCAACA 60.035 50.000 0.00 0.00 0.00 3.33
148 149 0.100503 GGCACAGTCAACACCAACAC 59.899 55.000 0.00 0.00 0.00 3.32
149 150 0.808125 GCACAGTCAACACCAACACA 59.192 50.000 0.00 0.00 0.00 3.72
150 151 1.467374 GCACAGTCAACACCAACACAC 60.467 52.381 0.00 0.00 0.00 3.82
151 152 1.083489 ACAGTCAACACCAACACACG 58.917 50.000 0.00 0.00 0.00 4.49
152 153 0.248054 CAGTCAACACCAACACACGC 60.248 55.000 0.00 0.00 0.00 5.34
153 154 0.675208 AGTCAACACCAACACACGCA 60.675 50.000 0.00 0.00 0.00 5.24
154 155 0.522495 GTCAACACCAACACACGCAC 60.522 55.000 0.00 0.00 0.00 5.34
155 156 0.955919 TCAACACCAACACACGCACA 60.956 50.000 0.00 0.00 0.00 4.57
156 157 0.796491 CAACACCAACACACGCACAC 60.796 55.000 0.00 0.00 0.00 3.82
157 158 1.237954 AACACCAACACACGCACACA 61.238 50.000 0.00 0.00 0.00 3.72
158 159 1.237954 ACACCAACACACGCACACAA 61.238 50.000 0.00 0.00 0.00 3.33
159 160 0.109551 CACCAACACACGCACACAAA 60.110 50.000 0.00 0.00 0.00 2.83
160 161 0.598562 ACCAACACACGCACACAAAA 59.401 45.000 0.00 0.00 0.00 2.44
161 162 1.000163 ACCAACACACGCACACAAAAA 60.000 42.857 0.00 0.00 0.00 1.94
162 163 1.388431 CCAACACACGCACACAAAAAC 59.612 47.619 0.00 0.00 0.00 2.43
163 164 2.054363 CAACACACGCACACAAAAACA 58.946 42.857 0.00 0.00 0.00 2.83
164 165 2.645730 ACACACGCACACAAAAACAT 57.354 40.000 0.00 0.00 0.00 2.71
165 166 2.257894 ACACACGCACACAAAAACATG 58.742 42.857 0.00 0.00 0.00 3.21
166 167 1.006183 CACACGCACACAAAAACATGC 60.006 47.619 0.00 0.00 34.66 4.06
167 168 0.576328 CACGCACACAAAAACATGCC 59.424 50.000 0.00 0.00 34.49 4.40
168 169 0.869454 ACGCACACAAAAACATGCCG 60.869 50.000 0.00 0.00 34.49 5.69
169 170 0.593518 CGCACACAAAAACATGCCGA 60.594 50.000 0.00 0.00 34.49 5.54
170 171 1.782044 GCACACAAAAACATGCCGAT 58.218 45.000 0.00 0.00 31.71 4.18
171 172 2.666895 CGCACACAAAAACATGCCGATA 60.667 45.455 0.00 0.00 34.49 2.92
172 173 3.312828 GCACACAAAAACATGCCGATAA 58.687 40.909 0.00 0.00 31.71 1.75
173 174 3.738282 GCACACAAAAACATGCCGATAAA 59.262 39.130 0.00 0.00 31.71 1.40
174 175 4.388469 GCACACAAAAACATGCCGATAAAT 59.612 37.500 0.00 0.00 31.71 1.40
175 176 5.574830 GCACACAAAAACATGCCGATAAATA 59.425 36.000 0.00 0.00 31.71 1.40
176 177 6.237542 GCACACAAAAACATGCCGATAAATAG 60.238 38.462 0.00 0.00 31.71 1.73
177 178 5.804979 ACACAAAAACATGCCGATAAATAGC 59.195 36.000 0.00 0.00 0.00 2.97
178 179 5.804473 CACAAAAACATGCCGATAAATAGCA 59.196 36.000 0.00 0.00 41.50 3.49
179 180 6.309980 CACAAAAACATGCCGATAAATAGCAA 59.690 34.615 0.00 0.00 40.46 3.91
180 181 6.870965 ACAAAAACATGCCGATAAATAGCAAA 59.129 30.769 0.00 0.00 40.46 3.68
181 182 7.063308 ACAAAAACATGCCGATAAATAGCAAAG 59.937 33.333 0.00 0.00 40.46 2.77
182 183 4.228912 ACATGCCGATAAATAGCAAAGC 57.771 40.909 0.00 0.00 40.46 3.51
183 184 3.004734 ACATGCCGATAAATAGCAAAGCC 59.995 43.478 0.00 0.00 40.46 4.35
184 185 2.649190 TGCCGATAAATAGCAAAGCCA 58.351 42.857 0.00 0.00 32.56 4.75
185 186 3.221771 TGCCGATAAATAGCAAAGCCAT 58.778 40.909 0.00 0.00 32.56 4.40
186 187 3.004629 TGCCGATAAATAGCAAAGCCATG 59.995 43.478 0.00 0.00 32.56 3.66
187 188 3.004734 GCCGATAAATAGCAAAGCCATGT 59.995 43.478 0.00 0.00 0.00 3.21
188 189 4.215399 GCCGATAAATAGCAAAGCCATGTA 59.785 41.667 0.00 0.00 0.00 2.29
189 190 5.278266 GCCGATAAATAGCAAAGCCATGTAA 60.278 40.000 0.00 0.00 0.00 2.41
190 191 6.734137 CCGATAAATAGCAAAGCCATGTAAA 58.266 36.000 0.00 0.00 0.00 2.01
191 192 7.199766 CCGATAAATAGCAAAGCCATGTAAAA 58.800 34.615 0.00 0.00 0.00 1.52
192 193 7.167468 CCGATAAATAGCAAAGCCATGTAAAAC 59.833 37.037 0.00 0.00 0.00 2.43
193 194 7.167468 CGATAAATAGCAAAGCCATGTAAAACC 59.833 37.037 0.00 0.00 0.00 3.27
194 195 5.736951 AATAGCAAAGCCATGTAAAACCA 57.263 34.783 0.00 0.00 0.00 3.67
195 196 5.736951 ATAGCAAAGCCATGTAAAACCAA 57.263 34.783 0.00 0.00 0.00 3.67
196 197 4.414337 AGCAAAGCCATGTAAAACCAAA 57.586 36.364 0.00 0.00 0.00 3.28
197 198 4.379652 AGCAAAGCCATGTAAAACCAAAG 58.620 39.130 0.00 0.00 0.00 2.77
198 199 3.058983 GCAAAGCCATGTAAAACCAAAGC 60.059 43.478 0.00 0.00 0.00 3.51
199 200 4.379652 CAAAGCCATGTAAAACCAAAGCT 58.620 39.130 0.00 0.00 0.00 3.74
200 201 5.537188 CAAAGCCATGTAAAACCAAAGCTA 58.463 37.500 0.00 0.00 0.00 3.32
201 202 6.165577 CAAAGCCATGTAAAACCAAAGCTAT 58.834 36.000 0.00 0.00 0.00 2.97
202 203 5.329035 AGCCATGTAAAACCAAAGCTATG 57.671 39.130 0.00 0.00 0.00 2.23
203 204 4.772100 AGCCATGTAAAACCAAAGCTATGT 59.228 37.500 0.00 0.00 0.00 2.29
204 205 4.864247 GCCATGTAAAACCAAAGCTATGTG 59.136 41.667 0.00 0.00 0.00 3.21
205 206 4.864247 CCATGTAAAACCAAAGCTATGTGC 59.136 41.667 0.00 0.00 43.29 4.57
206 207 5.468592 CATGTAAAACCAAAGCTATGTGCA 58.531 37.500 0.00 0.00 45.94 4.57
207 208 5.119931 TGTAAAACCAAAGCTATGTGCAG 57.880 39.130 0.00 0.00 45.94 4.41
208 209 4.824537 TGTAAAACCAAAGCTATGTGCAGA 59.175 37.500 0.00 0.00 45.94 4.26
209 210 3.923017 AAACCAAAGCTATGTGCAGAC 57.077 42.857 0.00 0.00 45.94 3.51
210 211 1.442769 ACCAAAGCTATGTGCAGACG 58.557 50.000 0.00 0.00 45.94 4.18
211 212 1.001974 ACCAAAGCTATGTGCAGACGA 59.998 47.619 0.00 0.00 45.94 4.20
212 213 1.662629 CCAAAGCTATGTGCAGACGAG 59.337 52.381 0.00 0.00 45.94 4.18
213 214 1.662629 CAAAGCTATGTGCAGACGAGG 59.337 52.381 0.00 0.00 45.94 4.63
214 215 1.186200 AAGCTATGTGCAGACGAGGA 58.814 50.000 0.00 0.00 45.94 3.71
215 216 1.186200 AGCTATGTGCAGACGAGGAA 58.814 50.000 0.00 0.00 45.94 3.36
216 217 1.550524 AGCTATGTGCAGACGAGGAAA 59.449 47.619 0.00 0.00 45.94 3.13
217 218 2.028112 AGCTATGTGCAGACGAGGAAAA 60.028 45.455 0.00 0.00 45.94 2.29
218 219 2.742053 GCTATGTGCAGACGAGGAAAAA 59.258 45.455 0.00 0.00 42.31 1.94
219 220 3.424962 GCTATGTGCAGACGAGGAAAAAC 60.425 47.826 0.00 0.00 42.31 2.43
220 221 2.031258 TGTGCAGACGAGGAAAAACA 57.969 45.000 0.00 0.00 0.00 2.83
221 222 1.939934 TGTGCAGACGAGGAAAAACAG 59.060 47.619 0.00 0.00 0.00 3.16
222 223 2.210116 GTGCAGACGAGGAAAAACAGA 58.790 47.619 0.00 0.00 0.00 3.41
223 224 2.612212 GTGCAGACGAGGAAAAACAGAA 59.388 45.455 0.00 0.00 0.00 3.02
224 225 3.064820 GTGCAGACGAGGAAAAACAGAAA 59.935 43.478 0.00 0.00 0.00 2.52
225 226 3.692101 TGCAGACGAGGAAAAACAGAAAA 59.308 39.130 0.00 0.00 0.00 2.29
226 227 4.035684 GCAGACGAGGAAAAACAGAAAAC 58.964 43.478 0.00 0.00 0.00 2.43
227 228 4.598062 CAGACGAGGAAAAACAGAAAACC 58.402 43.478 0.00 0.00 0.00 3.27
228 229 3.630769 AGACGAGGAAAAACAGAAAACCC 59.369 43.478 0.00 0.00 0.00 4.11
229 230 2.691526 ACGAGGAAAAACAGAAAACCCC 59.308 45.455 0.00 0.00 0.00 4.95
230 231 2.691011 CGAGGAAAAACAGAAAACCCCA 59.309 45.455 0.00 0.00 0.00 4.96
231 232 3.131400 CGAGGAAAAACAGAAAACCCCAA 59.869 43.478 0.00 0.00 0.00 4.12
232 233 4.693283 GAGGAAAAACAGAAAACCCCAAG 58.307 43.478 0.00 0.00 0.00 3.61
233 234 3.118408 AGGAAAAACAGAAAACCCCAAGC 60.118 43.478 0.00 0.00 0.00 4.01
234 235 2.595124 AAAACAGAAAACCCCAAGCG 57.405 45.000 0.00 0.00 0.00 4.68
235 236 1.770294 AAACAGAAAACCCCAAGCGA 58.230 45.000 0.00 0.00 0.00 4.93
236 237 1.995376 AACAGAAAACCCCAAGCGAT 58.005 45.000 0.00 0.00 0.00 4.58
237 238 1.534729 ACAGAAAACCCCAAGCGATC 58.465 50.000 0.00 0.00 0.00 3.69
238 239 0.811281 CAGAAAACCCCAAGCGATCC 59.189 55.000 0.00 0.00 0.00 3.36
239 240 0.404040 AGAAAACCCCAAGCGATCCA 59.596 50.000 0.00 0.00 0.00 3.41
240 241 0.526211 GAAAACCCCAAGCGATCCAC 59.474 55.000 0.00 0.00 0.00 4.02
241 242 0.112412 AAAACCCCAAGCGATCCACT 59.888 50.000 0.00 0.00 0.00 4.00
242 243 0.112412 AAACCCCAAGCGATCCACTT 59.888 50.000 0.00 0.00 0.00 3.16
243 244 0.112412 AACCCCAAGCGATCCACTTT 59.888 50.000 0.00 0.00 0.00 2.66
312 314 8.313292 TGATGCTGCTTAATTAATCCACTTTTT 58.687 29.630 0.00 0.00 0.00 1.94
337 339 3.070878 TCCTTGACACTGCACACATAAGA 59.929 43.478 0.00 0.00 0.00 2.10
347 349 5.180117 ACTGCACACATAAGACAATCAACTC 59.820 40.000 0.00 0.00 0.00 3.01
368 370 1.676529 CATTTCATGCTGCTCTCCCAG 59.323 52.381 0.00 0.00 35.93 4.45
451 454 1.202758 ACGAAGAACAGGAACCATGCA 60.203 47.619 0.00 0.00 0.00 3.96
457 460 2.440517 ACAGGAACCATGCATGCATA 57.559 45.000 31.73 6.51 34.91 3.14
462 469 2.954318 GGAACCATGCATGCATAGAACT 59.046 45.455 31.73 14.92 34.91 3.01
511 518 0.971959 GGGATGCATGTTGGGCTGAA 60.972 55.000 2.46 0.00 0.00 3.02
512 519 0.896923 GGATGCATGTTGGGCTGAAA 59.103 50.000 2.46 0.00 0.00 2.69
514 521 2.093341 GGATGCATGTTGGGCTGAAAAT 60.093 45.455 2.46 0.00 0.00 1.82
516 523 1.002201 TGCATGTTGGGCTGAAAATGG 59.998 47.619 0.00 0.00 0.00 3.16
517 524 1.275856 GCATGTTGGGCTGAAAATGGA 59.724 47.619 0.00 0.00 0.00 3.41
518 525 2.289569 GCATGTTGGGCTGAAAATGGAA 60.290 45.455 0.00 0.00 0.00 3.53
519 526 3.620472 GCATGTTGGGCTGAAAATGGAAT 60.620 43.478 0.00 0.00 0.00 3.01
520 527 3.959535 TGTTGGGCTGAAAATGGAATC 57.040 42.857 0.00 0.00 0.00 2.52
522 529 3.511146 TGTTGGGCTGAAAATGGAATCTC 59.489 43.478 0.00 0.00 0.00 2.75
523 530 2.738743 TGGGCTGAAAATGGAATCTCC 58.261 47.619 0.00 0.00 36.96 3.71
525 532 2.624029 GGGCTGAAAATGGAATCTCCCA 60.624 50.000 0.00 0.00 41.05 4.37
526 533 2.428530 GGCTGAAAATGGAATCTCCCAC 59.571 50.000 0.00 0.00 39.34 4.61
529 536 4.592942 CTGAAAATGGAATCTCCCACTGA 58.407 43.478 0.00 0.00 39.34 3.41
531 538 5.392995 TGAAAATGGAATCTCCCACTGAAA 58.607 37.500 0.00 0.00 39.34 2.69
536 543 5.197224 TGGAATCTCCCACTGAAATGATT 57.803 39.130 0.00 0.00 35.03 2.57
537 544 5.582953 TGGAATCTCCCACTGAAATGATTT 58.417 37.500 0.00 0.00 35.03 2.17
539 546 6.830324 TGGAATCTCCCACTGAAATGATTTAG 59.170 38.462 0.00 0.00 35.03 1.85
540 547 6.830838 GGAATCTCCCACTGAAATGATTTAGT 59.169 38.462 0.00 0.00 35.92 2.24
541 548 7.201767 GGAATCTCCCACTGAAATGATTTAGTG 60.202 40.741 14.83 14.83 46.96 2.74
542 549 6.126863 TCTCCCACTGAAATGATTTAGTGT 57.873 37.500 17.77 5.82 46.35 3.55
543 550 6.542821 TCTCCCACTGAAATGATTTAGTGTT 58.457 36.000 17.77 0.00 46.35 3.32
544 551 6.430925 TCTCCCACTGAAATGATTTAGTGTTG 59.569 38.462 17.77 12.39 46.35 3.33
545 552 6.303054 TCCCACTGAAATGATTTAGTGTTGA 58.697 36.000 17.77 13.63 46.35 3.18
547 554 7.121168 TCCCACTGAAATGATTTAGTGTTGATC 59.879 37.037 17.77 0.00 46.35 2.92
548 555 7.121759 CCCACTGAAATGATTTAGTGTTGATCT 59.878 37.037 17.77 0.00 46.35 2.75
549 556 8.517878 CCACTGAAATGATTTAGTGTTGATCTT 58.482 33.333 17.77 0.00 46.35 2.40
550 557 9.338291 CACTGAAATGATTTAGTGTTGATCTTG 57.662 33.333 14.11 0.00 44.11 3.02
551 558 9.288576 ACTGAAATGATTTAGTGTTGATCTTGA 57.711 29.630 0.00 0.00 34.40 3.02
622 723 3.386932 AGGATGATAAGCAAAGCCCAA 57.613 42.857 0.00 0.00 0.00 4.12
629 730 4.526262 TGATAAGCAAAGCCCAAAAAGCTA 59.474 37.500 0.00 0.00 40.49 3.32
875 1009 3.571401 AGGTAAATACTACGGATCCACGG 59.429 47.826 13.41 2.90 38.39 4.94
909 1051 2.364448 GGAAGCTCCTCCGGTCCT 60.364 66.667 0.00 0.00 32.53 3.85
911 1053 2.364448 AAGCTCCTCCGGTCCTCC 60.364 66.667 0.00 0.00 0.00 4.30
912 1054 3.986116 AAGCTCCTCCGGTCCTCCC 62.986 68.421 0.00 0.00 0.00 4.30
913 1055 4.467107 GCTCCTCCGGTCCTCCCT 62.467 72.222 0.00 0.00 0.00 4.20
915 1057 1.758906 CTCCTCCGGTCCTCCCTTC 60.759 68.421 0.00 0.00 0.00 3.46
916 1058 2.231540 CTCCTCCGGTCCTCCCTTCT 62.232 65.000 0.00 0.00 0.00 2.85
917 1059 1.758906 CCTCCGGTCCTCCCTTCTC 60.759 68.421 0.00 0.00 0.00 2.87
918 1060 1.758906 CTCCGGTCCTCCCTTCTCC 60.759 68.421 0.00 0.00 0.00 3.71
919 1061 3.148279 CCGGTCCTCCCTTCTCCG 61.148 72.222 0.00 0.00 40.72 4.63
920 1062 3.148279 CGGTCCTCCCTTCTCCGG 61.148 72.222 0.00 0.00 37.92 5.14
952 1094 3.059884 TCTCTGCTTGTTGCTTAGTTCG 58.940 45.455 0.00 0.00 43.37 3.95
1992 2478 2.425592 CTCCTCACGTGCAACCCA 59.574 61.111 11.67 0.00 0.00 4.51
2124 7597 2.033448 AAGTTCATTCCGCCGGCA 59.967 55.556 28.98 7.49 0.00 5.69
2162 7635 0.457337 CTCAAAATTCCAGCGGCTGC 60.457 55.000 24.27 10.33 43.24 5.25
2327 8522 4.403113 TGAATTCTATGTGCCATTGTGCAT 59.597 37.500 7.05 0.00 44.30 3.96
2590 8903 5.825593 TCAATATGTACTCCCTCCATTCC 57.174 43.478 0.00 0.00 0.00 3.01
2655 8968 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2938 10424 9.154632 ACCAAATTCAAGGGTTTAGAAAGTTAT 57.845 29.630 0.00 0.00 0.00 1.89
3060 10548 6.737720 TCTATTGATTACATGCTCTCACCT 57.262 37.500 0.00 0.00 0.00 4.00
3077 10565 2.097791 CACCTCGTGGTAGTTAGAGAGC 59.902 54.545 9.18 0.00 46.60 4.09
3090 10578 0.396417 AGAGAGCTCGTGCATAGGGT 60.396 55.000 12.58 0.00 42.74 4.34
3097 10585 1.812571 CTCGTGCATAGGGTTTTTGCT 59.187 47.619 0.00 0.00 37.28 3.91
3166 10654 1.735700 GCGTCTTCGTCATCACCATCA 60.736 52.381 0.00 0.00 39.49 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.306213 TGTCGAAAAATAAGAAACAACACACA 58.694 30.769 0.00 0.00 0.00 3.72
23 24 7.728580 TGTCGAAAAATAAGAAACAACACAC 57.271 32.000 0.00 0.00 0.00 3.82
24 25 8.744008 TTTGTCGAAAAATAAGAAACAACACA 57.256 26.923 0.00 0.00 0.00 3.72
25 26 8.318167 CCTTTGTCGAAAAATAAGAAACAACAC 58.682 33.333 0.15 0.00 0.00 3.32
26 27 8.244802 TCCTTTGTCGAAAAATAAGAAACAACA 58.755 29.630 0.15 0.00 0.00 3.33
27 28 8.623310 TCCTTTGTCGAAAAATAAGAAACAAC 57.377 30.769 0.15 0.00 0.00 3.32
28 29 9.243637 CATCCTTTGTCGAAAAATAAGAAACAA 57.756 29.630 0.15 0.00 0.00 2.83
29 30 7.865385 CCATCCTTTGTCGAAAAATAAGAAACA 59.135 33.333 0.15 0.00 0.00 2.83
30 31 8.079809 TCCATCCTTTGTCGAAAAATAAGAAAC 58.920 33.333 0.15 0.00 0.00 2.78
31 32 8.172352 TCCATCCTTTGTCGAAAAATAAGAAA 57.828 30.769 0.15 0.00 0.00 2.52
32 33 7.753309 TCCATCCTTTGTCGAAAAATAAGAA 57.247 32.000 0.15 0.00 0.00 2.52
33 34 7.938140 ATCCATCCTTTGTCGAAAAATAAGA 57.062 32.000 0.15 0.00 0.00 2.10
34 35 8.986477 AAATCCATCCTTTGTCGAAAAATAAG 57.014 30.769 0.15 0.00 0.00 1.73
37 38 9.942850 AATAAAATCCATCCTTTGTCGAAAAAT 57.057 25.926 0.15 0.00 0.00 1.82
40 41 8.188139 GCTAATAAAATCCATCCTTTGTCGAAA 58.812 33.333 0.00 0.00 0.00 3.46
41 42 7.556275 AGCTAATAAAATCCATCCTTTGTCGAA 59.444 33.333 0.00 0.00 0.00 3.71
42 43 7.054124 AGCTAATAAAATCCATCCTTTGTCGA 58.946 34.615 0.00 0.00 0.00 4.20
43 44 7.012327 TGAGCTAATAAAATCCATCCTTTGTCG 59.988 37.037 0.00 0.00 0.00 4.35
44 45 8.225603 TGAGCTAATAAAATCCATCCTTTGTC 57.774 34.615 0.00 0.00 0.00 3.18
45 46 8.593945 TTGAGCTAATAAAATCCATCCTTTGT 57.406 30.769 0.00 0.00 0.00 2.83
46 47 9.525409 CTTTGAGCTAATAAAATCCATCCTTTG 57.475 33.333 0.00 0.00 0.00 2.77
47 48 9.259832 ACTTTGAGCTAATAAAATCCATCCTTT 57.740 29.630 0.00 0.00 0.00 3.11
48 49 8.689972 CACTTTGAGCTAATAAAATCCATCCTT 58.310 33.333 0.00 0.00 0.00 3.36
49 50 8.055181 TCACTTTGAGCTAATAAAATCCATCCT 58.945 33.333 0.00 0.00 0.00 3.24
50 51 8.225603 TCACTTTGAGCTAATAAAATCCATCC 57.774 34.615 0.00 0.00 0.00 3.51
52 53 9.860898 GTTTCACTTTGAGCTAATAAAATCCAT 57.139 29.630 0.00 0.00 0.00 3.41
53 54 8.855110 TGTTTCACTTTGAGCTAATAAAATCCA 58.145 29.630 0.00 0.00 0.00 3.41
54 55 9.860898 ATGTTTCACTTTGAGCTAATAAAATCC 57.139 29.630 0.00 0.00 0.00 3.01
61 62 8.734386 CCTCTTAATGTTTCACTTTGAGCTAAT 58.266 33.333 0.00 0.00 0.00 1.73
62 63 7.936847 TCCTCTTAATGTTTCACTTTGAGCTAA 59.063 33.333 0.00 0.00 0.00 3.09
63 64 7.450074 TCCTCTTAATGTTTCACTTTGAGCTA 58.550 34.615 0.00 0.00 0.00 3.32
64 65 6.299141 TCCTCTTAATGTTTCACTTTGAGCT 58.701 36.000 0.00 0.00 0.00 4.09
65 66 6.560253 TCCTCTTAATGTTTCACTTTGAGC 57.440 37.500 0.00 0.00 0.00 4.26
66 67 9.219603 TGTATCCTCTTAATGTTTCACTTTGAG 57.780 33.333 0.00 0.00 0.00 3.02
67 68 9.567776 TTGTATCCTCTTAATGTTTCACTTTGA 57.432 29.630 0.00 0.00 0.00 2.69
70 71 9.349713 TGTTTGTATCCTCTTAATGTTTCACTT 57.650 29.630 0.00 0.00 0.00 3.16
71 72 8.918202 TGTTTGTATCCTCTTAATGTTTCACT 57.082 30.769 0.00 0.00 0.00 3.41
77 78 9.838339 CTCCTTATGTTTGTATCCTCTTAATGT 57.162 33.333 0.00 0.00 0.00 2.71
78 79 8.778358 GCTCCTTATGTTTGTATCCTCTTAATG 58.222 37.037 0.00 0.00 0.00 1.90
79 80 8.494433 TGCTCCTTATGTTTGTATCCTCTTAAT 58.506 33.333 0.00 0.00 0.00 1.40
80 81 7.769044 GTGCTCCTTATGTTTGTATCCTCTTAA 59.231 37.037 0.00 0.00 0.00 1.85
81 82 7.093068 TGTGCTCCTTATGTTTGTATCCTCTTA 60.093 37.037 0.00 0.00 0.00 2.10
82 83 6.116126 GTGCTCCTTATGTTTGTATCCTCTT 58.884 40.000 0.00 0.00 0.00 2.85
83 84 5.189736 TGTGCTCCTTATGTTTGTATCCTCT 59.810 40.000 0.00 0.00 0.00 3.69
84 85 5.294552 GTGTGCTCCTTATGTTTGTATCCTC 59.705 44.000 0.00 0.00 0.00 3.71
85 86 5.186198 GTGTGCTCCTTATGTTTGTATCCT 58.814 41.667 0.00 0.00 0.00 3.24
86 87 4.941263 TGTGTGCTCCTTATGTTTGTATCC 59.059 41.667 0.00 0.00 0.00 2.59
87 88 6.238484 GGATGTGTGCTCCTTATGTTTGTATC 60.238 42.308 0.00 0.00 0.00 2.24
88 89 5.590259 GGATGTGTGCTCCTTATGTTTGTAT 59.410 40.000 0.00 0.00 0.00 2.29
89 90 4.941263 GGATGTGTGCTCCTTATGTTTGTA 59.059 41.667 0.00 0.00 0.00 2.41
90 91 3.758554 GGATGTGTGCTCCTTATGTTTGT 59.241 43.478 0.00 0.00 0.00 2.83
91 92 3.181507 CGGATGTGTGCTCCTTATGTTTG 60.182 47.826 0.00 0.00 0.00 2.93
92 93 3.009723 CGGATGTGTGCTCCTTATGTTT 58.990 45.455 0.00 0.00 0.00 2.83
93 94 2.632377 CGGATGTGTGCTCCTTATGTT 58.368 47.619 0.00 0.00 0.00 2.71
94 95 1.134401 CCGGATGTGTGCTCCTTATGT 60.134 52.381 0.00 0.00 0.00 2.29
95 96 1.586422 CCGGATGTGTGCTCCTTATG 58.414 55.000 0.00 0.00 0.00 1.90
96 97 0.179045 GCCGGATGTGTGCTCCTTAT 60.179 55.000 5.05 0.00 0.00 1.73
97 98 1.220749 GCCGGATGTGTGCTCCTTA 59.779 57.895 5.05 0.00 0.00 2.69
98 99 2.045926 GCCGGATGTGTGCTCCTT 60.046 61.111 5.05 0.00 0.00 3.36
99 100 4.101448 GGCCGGATGTGTGCTCCT 62.101 66.667 5.05 0.00 0.00 3.69
100 101 4.101448 AGGCCGGATGTGTGCTCC 62.101 66.667 5.05 0.00 0.00 4.70
101 102 2.512515 GAGGCCGGATGTGTGCTC 60.513 66.667 5.05 0.00 0.00 4.26
102 103 3.005539 AGAGGCCGGATGTGTGCT 61.006 61.111 5.05 0.00 0.00 4.40
103 104 2.821366 CAGAGGCCGGATGTGTGC 60.821 66.667 5.05 0.00 0.00 4.57
104 105 2.821366 GCAGAGGCCGGATGTGTG 60.821 66.667 5.05 0.00 0.00 3.82
105 106 1.337384 TATGCAGAGGCCGGATGTGT 61.337 55.000 5.05 0.00 40.13 3.72
106 107 0.179048 TTATGCAGAGGCCGGATGTG 60.179 55.000 5.05 2.10 40.13 3.21
107 108 0.767375 ATTATGCAGAGGCCGGATGT 59.233 50.000 5.05 0.00 40.13 3.06
108 109 1.901591 AATTATGCAGAGGCCGGATG 58.098 50.000 5.05 0.00 40.13 3.51
109 110 2.026822 CCTAATTATGCAGAGGCCGGAT 60.027 50.000 5.05 0.00 40.13 4.18
110 111 1.347707 CCTAATTATGCAGAGGCCGGA 59.652 52.381 5.05 0.00 40.13 5.14
111 112 1.813513 CCTAATTATGCAGAGGCCGG 58.186 55.000 0.00 0.00 40.13 6.13
117 118 4.486125 TGACTGTGCCTAATTATGCAGA 57.514 40.909 14.76 12.87 38.34 4.26
118 119 4.395854 TGTTGACTGTGCCTAATTATGCAG 59.604 41.667 14.76 7.80 38.34 4.41
119 120 4.155826 GTGTTGACTGTGCCTAATTATGCA 59.844 41.667 10.92 10.92 34.54 3.96
120 121 4.438744 GGTGTTGACTGTGCCTAATTATGC 60.439 45.833 5.84 5.84 0.00 3.14
121 122 4.699735 TGGTGTTGACTGTGCCTAATTATG 59.300 41.667 0.00 0.00 0.00 1.90
122 123 4.917385 TGGTGTTGACTGTGCCTAATTAT 58.083 39.130 0.00 0.00 0.00 1.28
123 124 4.359434 TGGTGTTGACTGTGCCTAATTA 57.641 40.909 0.00 0.00 0.00 1.40
124 125 3.222173 TGGTGTTGACTGTGCCTAATT 57.778 42.857 0.00 0.00 0.00 1.40
125 126 2.884639 GTTGGTGTTGACTGTGCCTAAT 59.115 45.455 0.00 0.00 0.00 1.73
126 127 2.294074 GTTGGTGTTGACTGTGCCTAA 58.706 47.619 0.00 0.00 0.00 2.69
127 128 1.210722 TGTTGGTGTTGACTGTGCCTA 59.789 47.619 0.00 0.00 0.00 3.93
128 129 0.034574 TGTTGGTGTTGACTGTGCCT 60.035 50.000 0.00 0.00 0.00 4.75
129 130 0.100503 GTGTTGGTGTTGACTGTGCC 59.899 55.000 0.00 0.00 0.00 5.01
130 131 0.808125 TGTGTTGGTGTTGACTGTGC 59.192 50.000 0.00 0.00 0.00 4.57
131 132 1.202020 CGTGTGTTGGTGTTGACTGTG 60.202 52.381 0.00 0.00 0.00 3.66
132 133 1.083489 CGTGTGTTGGTGTTGACTGT 58.917 50.000 0.00 0.00 0.00 3.55
133 134 0.248054 GCGTGTGTTGGTGTTGACTG 60.248 55.000 0.00 0.00 0.00 3.51
134 135 0.675208 TGCGTGTGTTGGTGTTGACT 60.675 50.000 0.00 0.00 0.00 3.41
135 136 0.522495 GTGCGTGTGTTGGTGTTGAC 60.522 55.000 0.00 0.00 0.00 3.18
136 137 0.955919 TGTGCGTGTGTTGGTGTTGA 60.956 50.000 0.00 0.00 0.00 3.18
137 138 0.796491 GTGTGCGTGTGTTGGTGTTG 60.796 55.000 0.00 0.00 0.00 3.33
138 139 1.237954 TGTGTGCGTGTGTTGGTGTT 61.238 50.000 0.00 0.00 0.00 3.32
139 140 1.237954 TTGTGTGCGTGTGTTGGTGT 61.238 50.000 0.00 0.00 0.00 4.16
140 141 0.109551 TTTGTGTGCGTGTGTTGGTG 60.110 50.000 0.00 0.00 0.00 4.17
141 142 0.598562 TTTTGTGTGCGTGTGTTGGT 59.401 45.000 0.00 0.00 0.00 3.67
142 143 1.388431 GTTTTTGTGTGCGTGTGTTGG 59.612 47.619 0.00 0.00 0.00 3.77
143 144 2.054363 TGTTTTTGTGTGCGTGTGTTG 58.946 42.857 0.00 0.00 0.00 3.33
144 145 2.423926 TGTTTTTGTGTGCGTGTGTT 57.576 40.000 0.00 0.00 0.00 3.32
145 146 2.257894 CATGTTTTTGTGTGCGTGTGT 58.742 42.857 0.00 0.00 0.00 3.72
146 147 1.006183 GCATGTTTTTGTGTGCGTGTG 60.006 47.619 0.00 0.00 0.00 3.82
147 148 1.276415 GCATGTTTTTGTGTGCGTGT 58.724 45.000 0.00 0.00 0.00 4.49
148 149 0.576328 GGCATGTTTTTGTGTGCGTG 59.424 50.000 0.00 0.00 38.43 5.34
149 150 0.869454 CGGCATGTTTTTGTGTGCGT 60.869 50.000 0.00 0.00 38.43 5.24
150 151 0.593518 TCGGCATGTTTTTGTGTGCG 60.594 50.000 0.00 0.00 38.43 5.34
151 152 1.782044 ATCGGCATGTTTTTGTGTGC 58.218 45.000 0.00 0.00 36.88 4.57
152 153 6.237542 GCTATTTATCGGCATGTTTTTGTGTG 60.238 38.462 0.00 0.00 0.00 3.82
153 154 5.804979 GCTATTTATCGGCATGTTTTTGTGT 59.195 36.000 0.00 0.00 0.00 3.72
154 155 5.804473 TGCTATTTATCGGCATGTTTTTGTG 59.196 36.000 0.00 0.00 0.00 3.33
155 156 5.960113 TGCTATTTATCGGCATGTTTTTGT 58.040 33.333 0.00 0.00 0.00 2.83
156 157 6.884096 TTGCTATTTATCGGCATGTTTTTG 57.116 33.333 0.00 0.00 35.84 2.44
157 158 6.035975 GCTTTGCTATTTATCGGCATGTTTTT 59.964 34.615 0.00 0.00 35.84 1.94
158 159 5.519927 GCTTTGCTATTTATCGGCATGTTTT 59.480 36.000 0.00 0.00 35.84 2.43
159 160 5.043248 GCTTTGCTATTTATCGGCATGTTT 58.957 37.500 0.00 0.00 35.84 2.83
160 161 4.499696 GGCTTTGCTATTTATCGGCATGTT 60.500 41.667 0.00 0.00 35.84 2.71
161 162 3.004734 GGCTTTGCTATTTATCGGCATGT 59.995 43.478 0.00 0.00 35.84 3.21
162 163 3.004629 TGGCTTTGCTATTTATCGGCATG 59.995 43.478 0.00 0.00 35.84 4.06
163 164 3.221771 TGGCTTTGCTATTTATCGGCAT 58.778 40.909 0.00 0.00 35.84 4.40
164 165 2.649190 TGGCTTTGCTATTTATCGGCA 58.351 42.857 0.00 0.00 0.00 5.69
165 166 3.004734 ACATGGCTTTGCTATTTATCGGC 59.995 43.478 0.00 0.00 0.00 5.54
166 167 4.836125 ACATGGCTTTGCTATTTATCGG 57.164 40.909 0.00 0.00 0.00 4.18
167 168 7.167468 GGTTTTACATGGCTTTGCTATTTATCG 59.833 37.037 0.00 0.00 0.00 2.92
168 169 7.978975 TGGTTTTACATGGCTTTGCTATTTATC 59.021 33.333 0.00 0.00 0.00 1.75
169 170 7.846066 TGGTTTTACATGGCTTTGCTATTTAT 58.154 30.769 0.00 0.00 0.00 1.40
170 171 7.233389 TGGTTTTACATGGCTTTGCTATTTA 57.767 32.000 0.00 0.00 0.00 1.40
171 172 6.107901 TGGTTTTACATGGCTTTGCTATTT 57.892 33.333 0.00 0.00 0.00 1.40
172 173 5.736951 TGGTTTTACATGGCTTTGCTATT 57.263 34.783 0.00 0.00 0.00 1.73
173 174 5.736951 TTGGTTTTACATGGCTTTGCTAT 57.263 34.783 0.00 0.00 0.00 2.97
174 175 5.537188 CTTTGGTTTTACATGGCTTTGCTA 58.463 37.500 0.00 0.00 0.00 3.49
175 176 4.379652 CTTTGGTTTTACATGGCTTTGCT 58.620 39.130 0.00 0.00 0.00 3.91
176 177 3.058983 GCTTTGGTTTTACATGGCTTTGC 60.059 43.478 0.00 0.00 0.00 3.68
177 178 4.379652 AGCTTTGGTTTTACATGGCTTTG 58.620 39.130 0.00 0.00 0.00 2.77
178 179 4.687901 AGCTTTGGTTTTACATGGCTTT 57.312 36.364 0.00 0.00 0.00 3.51
179 180 5.245977 ACATAGCTTTGGTTTTACATGGCTT 59.754 36.000 9.08 0.00 33.16 4.35
180 181 4.772100 ACATAGCTTTGGTTTTACATGGCT 59.228 37.500 9.08 0.00 34.57 4.75
181 182 4.864247 CACATAGCTTTGGTTTTACATGGC 59.136 41.667 9.08 0.00 0.00 4.40
182 183 4.864247 GCACATAGCTTTGGTTTTACATGG 59.136 41.667 9.08 0.00 41.15 3.66
183 184 5.468592 TGCACATAGCTTTGGTTTTACATG 58.531 37.500 9.08 0.00 45.94 3.21
184 185 5.476599 TCTGCACATAGCTTTGGTTTTACAT 59.523 36.000 9.08 0.00 45.94 2.29
185 186 4.824537 TCTGCACATAGCTTTGGTTTTACA 59.175 37.500 9.08 0.00 45.94 2.41
186 187 5.154222 GTCTGCACATAGCTTTGGTTTTAC 58.846 41.667 9.08 0.00 45.94 2.01
187 188 4.083537 CGTCTGCACATAGCTTTGGTTTTA 60.084 41.667 9.08 0.00 45.94 1.52
188 189 3.304659 CGTCTGCACATAGCTTTGGTTTT 60.305 43.478 9.08 0.00 45.94 2.43
189 190 2.226437 CGTCTGCACATAGCTTTGGTTT 59.774 45.455 9.08 0.00 45.94 3.27
190 191 1.806542 CGTCTGCACATAGCTTTGGTT 59.193 47.619 9.08 0.00 45.94 3.67
191 192 1.001974 TCGTCTGCACATAGCTTTGGT 59.998 47.619 9.08 0.00 45.94 3.67
192 193 1.662629 CTCGTCTGCACATAGCTTTGG 59.337 52.381 9.08 0.00 45.94 3.28
193 194 1.662629 CCTCGTCTGCACATAGCTTTG 59.337 52.381 2.27 2.27 45.94 2.77
194 195 1.550524 TCCTCGTCTGCACATAGCTTT 59.449 47.619 0.00 0.00 45.94 3.51
195 196 1.186200 TCCTCGTCTGCACATAGCTT 58.814 50.000 0.00 0.00 45.94 3.74
196 197 1.186200 TTCCTCGTCTGCACATAGCT 58.814 50.000 0.00 0.00 45.94 3.32
197 198 2.010145 TTTCCTCGTCTGCACATAGC 57.990 50.000 0.00 0.00 45.96 2.97
198 199 3.745975 TGTTTTTCCTCGTCTGCACATAG 59.254 43.478 0.00 0.00 0.00 2.23
199 200 3.734463 TGTTTTTCCTCGTCTGCACATA 58.266 40.909 0.00 0.00 0.00 2.29
200 201 2.549754 CTGTTTTTCCTCGTCTGCACAT 59.450 45.455 0.00 0.00 0.00 3.21
201 202 1.939934 CTGTTTTTCCTCGTCTGCACA 59.060 47.619 0.00 0.00 0.00 4.57
202 203 2.210116 TCTGTTTTTCCTCGTCTGCAC 58.790 47.619 0.00 0.00 0.00 4.57
203 204 2.613026 TCTGTTTTTCCTCGTCTGCA 57.387 45.000 0.00 0.00 0.00 4.41
204 205 3.963383 TTTCTGTTTTTCCTCGTCTGC 57.037 42.857 0.00 0.00 0.00 4.26
205 206 4.497507 GGGTTTTCTGTTTTTCCTCGTCTG 60.498 45.833 0.00 0.00 0.00 3.51
206 207 3.630769 GGGTTTTCTGTTTTTCCTCGTCT 59.369 43.478 0.00 0.00 0.00 4.18
207 208 3.243301 GGGGTTTTCTGTTTTTCCTCGTC 60.243 47.826 0.00 0.00 0.00 4.20
208 209 2.691526 GGGGTTTTCTGTTTTTCCTCGT 59.308 45.455 0.00 0.00 0.00 4.18
209 210 2.691011 TGGGGTTTTCTGTTTTTCCTCG 59.309 45.455 0.00 0.00 0.00 4.63
210 211 4.693283 CTTGGGGTTTTCTGTTTTTCCTC 58.307 43.478 0.00 0.00 0.00 3.71
211 212 3.118408 GCTTGGGGTTTTCTGTTTTTCCT 60.118 43.478 0.00 0.00 0.00 3.36
212 213 3.202906 GCTTGGGGTTTTCTGTTTTTCC 58.797 45.455 0.00 0.00 0.00 3.13
213 214 2.863740 CGCTTGGGGTTTTCTGTTTTTC 59.136 45.455 0.00 0.00 0.00 2.29
214 215 2.498078 TCGCTTGGGGTTTTCTGTTTTT 59.502 40.909 0.00 0.00 0.00 1.94
215 216 2.104170 TCGCTTGGGGTTTTCTGTTTT 58.896 42.857 0.00 0.00 0.00 2.43
216 217 1.770294 TCGCTTGGGGTTTTCTGTTT 58.230 45.000 0.00 0.00 0.00 2.83
217 218 1.886542 GATCGCTTGGGGTTTTCTGTT 59.113 47.619 0.00 0.00 0.00 3.16
218 219 1.534729 GATCGCTTGGGGTTTTCTGT 58.465 50.000 0.00 0.00 0.00 3.41
219 220 0.811281 GGATCGCTTGGGGTTTTCTG 59.189 55.000 0.00 0.00 0.00 3.02
220 221 0.404040 TGGATCGCTTGGGGTTTTCT 59.596 50.000 0.00 0.00 0.00 2.52
221 222 0.526211 GTGGATCGCTTGGGGTTTTC 59.474 55.000 0.00 0.00 0.00 2.29
222 223 0.112412 AGTGGATCGCTTGGGGTTTT 59.888 50.000 0.00 0.00 0.00 2.43
223 224 0.112412 AAGTGGATCGCTTGGGGTTT 59.888 50.000 1.07 0.00 32.64 3.27
224 225 0.112412 AAAGTGGATCGCTTGGGGTT 59.888 50.000 2.53 0.00 34.24 4.11
225 226 0.112412 AAAAGTGGATCGCTTGGGGT 59.888 50.000 2.53 0.00 34.24 4.95
226 227 0.527565 CAAAAGTGGATCGCTTGGGG 59.472 55.000 2.53 0.00 34.24 4.96
227 228 1.068333 CACAAAAGTGGATCGCTTGGG 60.068 52.381 2.53 1.75 34.24 4.12
228 229 1.608590 ACACAAAAGTGGATCGCTTGG 59.391 47.619 0.38 2.04 34.24 3.61
229 230 2.033299 ACACACAAAAGTGGATCGCTTG 59.967 45.455 0.38 0.00 43.72 4.01
230 231 2.297701 ACACACAAAAGTGGATCGCTT 58.702 42.857 0.38 0.00 43.72 4.68
231 232 1.967319 ACACACAAAAGTGGATCGCT 58.033 45.000 0.38 0.00 43.72 4.93
232 233 2.223479 ACAACACACAAAAGTGGATCGC 60.223 45.455 0.38 0.00 43.72 4.58
233 234 3.691049 ACAACACACAAAAGTGGATCG 57.309 42.857 0.38 0.00 43.72 3.69
234 235 5.650543 AGAAACAACACACAAAAGTGGATC 58.349 37.500 0.38 0.00 43.72 3.36
235 236 5.659440 AGAAACAACACACAAAAGTGGAT 57.341 34.783 0.38 0.00 43.72 3.41
236 237 5.461032 AAGAAACAACACACAAAAGTGGA 57.539 34.783 0.38 0.00 43.72 4.02
237 238 7.826260 AATAAGAAACAACACACAAAAGTGG 57.174 32.000 0.38 0.00 43.72 4.00
238 239 8.707839 ACAAATAAGAAACAACACACAAAAGTG 58.292 29.630 0.00 0.00 44.93 3.16
239 240 8.707839 CACAAATAAGAAACAACACACAAAAGT 58.292 29.630 0.00 0.00 0.00 2.66
240 241 7.687757 GCACAAATAAGAAACAACACACAAAAG 59.312 33.333 0.00 0.00 0.00 2.27
241 242 7.386299 AGCACAAATAAGAAACAACACACAAAA 59.614 29.630 0.00 0.00 0.00 2.44
242 243 6.870965 AGCACAAATAAGAAACAACACACAAA 59.129 30.769 0.00 0.00 0.00 2.83
243 244 6.393990 AGCACAAATAAGAAACAACACACAA 58.606 32.000 0.00 0.00 0.00 3.33
312 314 1.339535 TGTGTGCAGTGTCAAGGACAA 60.340 47.619 0.00 0.00 44.49 3.18
326 328 4.455533 TGGAGTTGATTGTCTTATGTGTGC 59.544 41.667 0.00 0.00 0.00 4.57
337 339 4.619863 GCAGCATGAAATGGAGTTGATTGT 60.620 41.667 0.00 0.00 46.86 2.71
347 349 1.030457 GGGAGAGCAGCATGAAATGG 58.970 55.000 0.00 0.00 46.86 3.16
368 370 2.830772 TCTTGCGCTGCATTCATTAC 57.169 45.000 9.73 0.00 38.76 1.89
451 454 8.887036 TCACGATTAACATTAGTTCTATGCAT 57.113 30.769 3.79 3.79 39.15 3.96
511 518 5.582953 TCATTTCAGTGGGAGATTCCATTT 58.417 37.500 0.00 0.00 38.64 2.32
512 519 5.197224 TCATTTCAGTGGGAGATTCCATT 57.803 39.130 0.00 0.00 38.64 3.16
514 521 4.868172 ATCATTTCAGTGGGAGATTCCA 57.132 40.909 0.00 0.00 38.64 3.53
516 523 7.337942 ACACTAAATCATTTCAGTGGGAGATTC 59.662 37.037 17.12 0.00 42.13 2.52
517 524 7.177878 ACACTAAATCATTTCAGTGGGAGATT 58.822 34.615 17.12 0.00 42.13 2.40
518 525 6.725364 ACACTAAATCATTTCAGTGGGAGAT 58.275 36.000 17.12 0.00 42.13 2.75
519 526 6.126863 ACACTAAATCATTTCAGTGGGAGA 57.873 37.500 17.12 0.00 42.13 3.71
520 527 6.430925 TCAACACTAAATCATTTCAGTGGGAG 59.569 38.462 17.12 10.35 42.13 4.30
522 529 6.573664 TCAACACTAAATCATTTCAGTGGG 57.426 37.500 17.12 11.87 42.13 4.61
523 530 8.048534 AGATCAACACTAAATCATTTCAGTGG 57.951 34.615 17.12 2.75 42.13 4.00
525 532 9.288576 TCAAGATCAACACTAAATCATTTCAGT 57.711 29.630 0.00 0.00 0.00 3.41
536 543 9.244292 ACTGTACTAGATCAAGATCAACACTAA 57.756 33.333 12.21 0.00 40.22 2.24
537 544 8.809468 ACTGTACTAGATCAAGATCAACACTA 57.191 34.615 12.21 0.00 40.22 2.74
539 546 7.815068 ACAACTGTACTAGATCAAGATCAACAC 59.185 37.037 12.21 5.36 40.22 3.32
540 547 7.896811 ACAACTGTACTAGATCAAGATCAACA 58.103 34.615 12.21 9.18 40.22 3.33
541 548 8.029522 TGACAACTGTACTAGATCAAGATCAAC 58.970 37.037 12.21 5.66 40.22 3.18
542 549 8.122472 TGACAACTGTACTAGATCAAGATCAA 57.878 34.615 12.21 0.00 40.22 2.57
543 550 7.629437 GCTGACAACTGTACTAGATCAAGATCA 60.629 40.741 12.21 0.00 40.22 2.92
544 551 6.695278 GCTGACAACTGTACTAGATCAAGATC 59.305 42.308 0.00 1.81 38.09 2.75
545 552 6.153510 TGCTGACAACTGTACTAGATCAAGAT 59.846 38.462 0.00 0.00 0.00 2.40
547 554 5.714047 TGCTGACAACTGTACTAGATCAAG 58.286 41.667 0.00 0.00 0.00 3.02
548 555 5.722021 TGCTGACAACTGTACTAGATCAA 57.278 39.130 0.00 0.00 0.00 2.57
549 556 5.921962 ATGCTGACAACTGTACTAGATCA 57.078 39.130 0.00 0.00 0.00 2.92
550 557 7.652727 TCATATGCTGACAACTGTACTAGATC 58.347 38.462 0.00 0.00 0.00 2.75
551 558 7.588497 TCATATGCTGACAACTGTACTAGAT 57.412 36.000 0.00 0.00 0.00 1.98
552 559 7.404671 TTCATATGCTGACAACTGTACTAGA 57.595 36.000 0.00 0.00 32.17 2.43
553 560 8.546244 CATTTCATATGCTGACAACTGTACTAG 58.454 37.037 0.00 0.00 32.17 2.57
559 659 9.447040 CTAAATCATTTCATATGCTGACAACTG 57.553 33.333 0.00 0.00 32.17 3.16
598 699 4.531732 TGGGCTTTGCTTATCATCCTTTTT 59.468 37.500 0.00 0.00 0.00 1.94
622 723 4.953940 TTTGCCTTTGATGGTAGCTTTT 57.046 36.364 0.00 0.00 0.00 2.27
794 926 5.244851 TCAAGTTGAGATGAGCTGAGTACTT 59.755 40.000 0.08 0.00 0.00 2.24
875 1009 3.576356 CGTGTGGATGGATGCGCC 61.576 66.667 4.18 0.00 37.10 6.53
904 1046 3.471806 GCCGGAGAAGGGAGGACC 61.472 72.222 5.05 0.00 40.67 4.46
905 1047 3.471806 GGCCGGAGAAGGGAGGAC 61.472 72.222 5.05 0.00 0.00 3.85
906 1048 3.332393 ATGGCCGGAGAAGGGAGGA 62.332 63.158 5.05 0.00 0.00 3.71
909 1051 1.384502 ATGATGGCCGGAGAAGGGA 60.385 57.895 5.05 0.00 0.00 4.20
911 1053 1.301244 CGATGATGGCCGGAGAAGG 60.301 63.158 5.05 0.00 0.00 3.46
912 1054 0.319728 ATCGATGATGGCCGGAGAAG 59.680 55.000 5.05 0.00 0.00 2.85
913 1055 0.318441 GATCGATGATGGCCGGAGAA 59.682 55.000 5.05 0.00 0.00 2.87
915 1057 0.108898 GAGATCGATGATGGCCGGAG 60.109 60.000 5.05 0.00 0.00 4.63
916 1058 0.540597 AGAGATCGATGATGGCCGGA 60.541 55.000 5.05 0.00 0.00 5.14
917 1059 0.389556 CAGAGATCGATGATGGCCGG 60.390 60.000 0.54 0.00 0.00 6.13
918 1060 1.013005 GCAGAGATCGATGATGGCCG 61.013 60.000 0.54 0.00 0.00 6.13
919 1061 0.321021 AGCAGAGATCGATGATGGCC 59.679 55.000 0.54 0.00 0.00 5.36
920 1062 1.799403 CAAGCAGAGATCGATGATGGC 59.201 52.381 0.54 1.25 0.00 4.40
1719 2199 1.204312 GCACGCGAACAAGGTCTTC 59.796 57.895 15.93 0.00 0.00 2.87
1961 2447 1.527433 GAGGAGCCCTTGCAACAACC 61.527 60.000 0.00 0.00 41.13 3.77
1963 2449 0.823356 GTGAGGAGCCCTTGCAACAA 60.823 55.000 0.00 0.00 41.13 2.83
1992 2478 1.005037 TGCCGTCAATCGCTTGTCT 60.005 52.632 0.00 0.00 38.35 3.41
2124 7597 5.946942 TGAGTAGATTCTTCTCTGGCATT 57.053 39.130 17.83 0.00 30.83 3.56
2327 8522 7.093596 ACACACATCTCTGATTCTCTGAACATA 60.094 37.037 0.00 0.00 0.00 2.29
3060 10548 2.277969 CGAGCTCTCTAACTACCACGA 58.722 52.381 12.85 0.00 0.00 4.35
3077 10565 1.812571 AGCAAAAACCCTATGCACGAG 59.187 47.619 0.00 0.00 42.45 4.18
3166 10654 1.737355 GCATATGCATGGTGCCGGTT 61.737 55.000 22.84 0.00 44.23 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.