Multiple sequence alignment - TraesCS4D01G256200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G256200 chr4D 100.000 6048 0 0 1 6048 425245220 425251267 0.000000e+00 11169.0
1 TraesCS4D01G256200 chr4B 95.054 3255 97 9 834 4088 520907493 520910683 0.000000e+00 5060.0
2 TraesCS4D01G256200 chr4B 91.940 1948 94 39 4128 6047 520910930 520912842 0.000000e+00 2669.0
3 TraesCS4D01G256200 chr4B 87.260 730 27 19 1 710 520906426 520907109 0.000000e+00 773.0
4 TraesCS4D01G256200 chr4B 92.814 501 21 5 5011 5497 228028771 228029270 0.000000e+00 712.0
5 TraesCS4D01G256200 chr4B 94.330 194 11 0 5638 5831 228029394 228029587 1.270000e-76 298.0
6 TraesCS4D01G256200 chr4A 92.628 2903 117 41 1 2874 39524436 39521602 0.000000e+00 4085.0
7 TraesCS4D01G256200 chr4A 94.042 1712 50 28 4343 6024 39520294 39518605 0.000000e+00 2549.0
8 TraesCS4D01G256200 chr4A 96.918 876 26 1 3120 3994 39521603 39520728 0.000000e+00 1467.0
9 TraesCS4D01G256200 chr7A 87.721 847 47 34 5011 5831 290243744 290244559 0.000000e+00 935.0
10 TraesCS4D01G256200 chr2A 86.784 855 49 30 5011 5831 614698615 614697791 0.000000e+00 894.0
11 TraesCS4D01G256200 chr2A 100.000 28 0 0 2355 2382 623542321 623542348 1.100000e-02 52.8
12 TraesCS4D01G256200 chr7B 93.333 495 18 5 5017 5497 653448086 653448579 0.000000e+00 717.0
13 TraesCS4D01G256200 chr7B 93.014 501 20 5 5011 5497 653602646 653603145 0.000000e+00 717.0
14 TraesCS4D01G256200 chr7B 92.323 495 23 5 5017 5497 653515806 653516299 0.000000e+00 689.0
15 TraesCS4D01G256200 chr7B 95.288 191 9 0 5641 5831 653448706 653448896 2.740000e-78 303.0
16 TraesCS4D01G256200 chr7B 94.764 191 10 0 5641 5831 653516426 653516616 1.270000e-76 298.0
17 TraesCS4D01G256200 chr7B 94.241 191 11 0 5641 5831 653603272 653603462 5.930000e-75 292.0
18 TraesCS4D01G256200 chr7B 100.000 28 0 0 2355 2382 146141106 146141133 1.100000e-02 52.8
19 TraesCS4D01G256200 chr2B 92.814 501 21 5 5011 5497 693977519 693977020 0.000000e+00 712.0
20 TraesCS4D01G256200 chr2B 94.681 188 10 0 5644 5831 693976890 693976703 5.930000e-75 292.0
21 TraesCS4D01G256200 chr2B 100.000 34 0 0 2349 2382 1835074 1835107 5.060000e-06 63.9
22 TraesCS4D01G256200 chr2D 97.059 34 1 0 2349 2382 135602703 135602736 2.350000e-04 58.4
23 TraesCS4D01G256200 chr5D 100.000 28 0 0 2355 2382 458874246 458874273 1.100000e-02 52.8
24 TraesCS4D01G256200 chr5B 100.000 28 0 0 2355 2382 514682827 514682800 1.100000e-02 52.8
25 TraesCS4D01G256200 chr5A 100.000 28 0 0 2355 2382 447372105 447372078 1.100000e-02 52.8
26 TraesCS4D01G256200 chr3B 100.000 28 0 0 2352 2379 674664845 674664872 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G256200 chr4D 425245220 425251267 6047 False 11169.000000 11169 100.000000 1 6048 1 chr4D.!!$F1 6047
1 TraesCS4D01G256200 chr4B 520906426 520912842 6416 False 2834.000000 5060 91.418000 1 6047 3 chr4B.!!$F2 6046
2 TraesCS4D01G256200 chr4B 228028771 228029587 816 False 505.000000 712 93.572000 5011 5831 2 chr4B.!!$F1 820
3 TraesCS4D01G256200 chr4A 39518605 39524436 5831 True 2700.333333 4085 94.529333 1 6024 3 chr4A.!!$R1 6023
4 TraesCS4D01G256200 chr7A 290243744 290244559 815 False 935.000000 935 87.721000 5011 5831 1 chr7A.!!$F1 820
5 TraesCS4D01G256200 chr2A 614697791 614698615 824 True 894.000000 894 86.784000 5011 5831 1 chr2A.!!$R1 820
6 TraesCS4D01G256200 chr7B 653448086 653448896 810 False 510.000000 717 94.310500 5017 5831 2 chr7B.!!$F2 814
7 TraesCS4D01G256200 chr7B 653602646 653603462 816 False 504.500000 717 93.627500 5011 5831 2 chr7B.!!$F4 820
8 TraesCS4D01G256200 chr7B 653515806 653516616 810 False 493.500000 689 93.543500 5017 5831 2 chr7B.!!$F3 814
9 TraesCS4D01G256200 chr2B 693976703 693977519 816 True 502.000000 712 93.747500 5011 5831 2 chr2B.!!$R1 820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 849 0.389296 CATCGCCAGTTCGTACCACA 60.389 55.000 0.00 0.00 0.0 4.17 F
1635 1933 0.191064 ACTCCACCACCTCCTTCTCA 59.809 55.000 0.00 0.00 0.0 3.27 F
2698 3003 1.404047 GGCATGCAATTGTGGGTGTAC 60.404 52.381 21.36 0.00 0.0 2.90 F
3118 3423 0.392461 TACCGCTGGCAGTGAAATCC 60.392 55.000 28.65 2.69 0.0 3.01 F
4155 4692 0.613260 AGGCTCTGTTCGGTATTGCA 59.387 50.000 0.00 0.00 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 2532 2.636830 CCTATCAGAGGCACAAAGTGG 58.363 52.381 0.00 0.0 38.96 4.00 R
2975 3280 2.029649 CCATGGTGAGCTGAAAAACTGG 60.030 50.000 2.57 0.0 0.00 4.00 R
3687 3992 0.823460 CCTTTGCACCACCAACAACT 59.177 50.000 0.00 0.0 0.00 3.16 R
4805 5362 0.320050 TCGCAAGCTCATACACCACA 59.680 50.000 0.00 0.0 37.18 4.17 R
5616 6213 0.040958 CAGCAGCAACACGGAAAGAC 60.041 55.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.223099 CTGATTTTTATTTCTTGGCCAGATTTT 57.777 29.630 5.11 0.00 0.00 1.82
108 110 0.392863 TGTGCACCTCATTCCCATCG 60.393 55.000 15.69 0.00 0.00 3.84
210 217 2.583143 TCTGCATCCGTTAGCTAGCTA 58.417 47.619 20.67 20.67 0.00 3.32
211 218 2.554462 TCTGCATCCGTTAGCTAGCTAG 59.446 50.000 23.03 16.84 0.00 3.42
257 276 8.017373 CGTCACTTAACAAATTGACAAGATGAT 58.983 33.333 14.65 1.74 38.64 2.45
328 351 5.991328 ACCACATAGCTATCATTCGTTTG 57.009 39.130 2.34 0.00 0.00 2.93
341 364 5.478407 TCATTCGTTTGAGACATAAGCTGA 58.522 37.500 0.00 0.00 0.00 4.26
363 386 4.556942 TGCTCAACATTGTCAAACAGAG 57.443 40.909 0.00 0.00 0.00 3.35
384 409 7.990886 ACAGAGAAAACTATTACTCAAACACCA 59.009 33.333 0.00 0.00 32.59 4.17
385 410 8.499162 CAGAGAAAACTATTACTCAAACACCAG 58.501 37.037 0.00 0.00 32.59 4.00
540 570 5.444744 ACCAGAGTGAGTAGATAGAGTGT 57.555 43.478 0.00 0.00 0.00 3.55
541 571 6.563037 ACCAGAGTGAGTAGATAGAGTGTA 57.437 41.667 0.00 0.00 0.00 2.90
580 611 2.190578 CCCACGGCAAGGAGGATC 59.809 66.667 0.00 0.00 0.00 3.36
581 612 2.669133 CCCACGGCAAGGAGGATCA 61.669 63.158 0.00 0.00 36.25 2.92
582 613 1.153289 CCACGGCAAGGAGGATCAG 60.153 63.158 0.00 0.00 36.25 2.90
583 614 1.153289 CACGGCAAGGAGGATCAGG 60.153 63.158 0.00 0.00 36.25 3.86
584 615 1.613630 ACGGCAAGGAGGATCAGGT 60.614 57.895 0.00 0.00 36.25 4.00
585 616 1.153289 CGGCAAGGAGGATCAGGTG 60.153 63.158 0.00 0.00 36.25 4.00
586 617 1.225704 GGCAAGGAGGATCAGGTGG 59.774 63.158 0.00 0.00 36.25 4.61
587 618 1.225704 GCAAGGAGGATCAGGTGGG 59.774 63.158 0.00 0.00 36.25 4.61
588 619 1.918253 CAAGGAGGATCAGGTGGGG 59.082 63.158 0.00 0.00 36.25 4.96
589 620 1.308216 AAGGAGGATCAGGTGGGGG 60.308 63.158 0.00 0.00 36.25 5.40
590 621 1.837533 AAGGAGGATCAGGTGGGGGA 61.838 60.000 0.00 0.00 36.25 4.81
591 622 1.768077 GGAGGATCAGGTGGGGGAG 60.768 68.421 0.00 0.00 36.25 4.30
592 623 2.367512 AGGATCAGGTGGGGGAGC 60.368 66.667 0.00 0.00 0.00 4.70
593 624 2.692368 GGATCAGGTGGGGGAGCA 60.692 66.667 0.00 0.00 0.00 4.26
594 625 2.750657 GGATCAGGTGGGGGAGCAG 61.751 68.421 0.00 0.00 0.00 4.24
595 626 1.690633 GATCAGGTGGGGGAGCAGA 60.691 63.158 0.00 0.00 0.00 4.26
596 627 1.692042 ATCAGGTGGGGGAGCAGAG 60.692 63.158 0.00 0.00 0.00 3.35
597 628 4.106925 CAGGTGGGGGAGCAGAGC 62.107 72.222 0.00 0.00 0.00 4.09
598 629 4.664267 AGGTGGGGGAGCAGAGCA 62.664 66.667 0.00 0.00 0.00 4.26
599 630 4.106925 GGTGGGGGAGCAGAGCAG 62.107 72.222 0.00 0.00 0.00 4.24
624 655 1.204786 TTCCCGAGCAAAGATCCCCA 61.205 55.000 0.00 0.00 0.00 4.96
669 701 0.823356 AAGAGCAAAGCGGCCAAAGA 60.823 50.000 2.24 0.00 0.00 2.52
803 835 1.324736 GCTGTAACTACACTGCATCGC 59.675 52.381 0.00 0.00 41.49 4.58
804 836 1.927174 CTGTAACTACACTGCATCGCC 59.073 52.381 0.00 0.00 31.93 5.54
817 849 0.389296 CATCGCCAGTTCGTACCACA 60.389 55.000 0.00 0.00 0.00 4.17
916 1211 3.077556 GCGGAAGAGGCAGAGGGA 61.078 66.667 0.00 0.00 0.00 4.20
1551 1849 4.427661 GCTCGCAGCCTCGACTGT 62.428 66.667 5.09 0.00 39.96 3.55
1587 1885 3.329889 TCCATCCTGGCTGCCGTT 61.330 61.111 14.98 0.00 37.47 4.44
1590 1888 1.675310 CATCCTGGCTGCCGTTCAA 60.675 57.895 14.98 0.00 0.00 2.69
1593 1891 1.003839 CCTGGCTGCCGTTCAACTA 60.004 57.895 14.98 0.00 0.00 2.24
1596 1894 0.970640 TGGCTGCCGTTCAACTACTA 59.029 50.000 14.98 0.00 0.00 1.82
1635 1933 0.191064 ACTCCACCACCTCCTTCTCA 59.809 55.000 0.00 0.00 0.00 3.27
2310 2615 6.989169 TGTTGTGGTTGCTTGCTTAATATTTT 59.011 30.769 0.00 0.00 0.00 1.82
2311 2616 7.497249 TGTTGTGGTTGCTTGCTTAATATTTTT 59.503 29.630 0.00 0.00 0.00 1.94
2312 2617 8.983724 GTTGTGGTTGCTTGCTTAATATTTTTA 58.016 29.630 0.00 0.00 0.00 1.52
2489 2794 3.442273 GCGAACATATCCAACCCTTTTCA 59.558 43.478 0.00 0.00 0.00 2.69
2572 2877 5.321959 TCTTTGAACACACTGCATTTCAA 57.678 34.783 0.00 0.00 36.43 2.69
2626 2931 1.539827 CCCGGTCTGTTGAATCAAACC 59.460 52.381 0.00 1.05 0.00 3.27
2642 2947 5.931441 TCAAACCAAACTTGTTGTTTTGG 57.069 34.783 10.81 10.81 45.69 3.28
2698 3003 1.404047 GGCATGCAATTGTGGGTGTAC 60.404 52.381 21.36 0.00 0.00 2.90
2749 3054 9.812347 ATTCATTAACATCTATGCCCTATTTGA 57.188 29.630 0.00 0.00 0.00 2.69
2824 3129 8.207545 AGCTATTAGACTTTATGAGAACAAGGG 58.792 37.037 0.00 0.00 0.00 3.95
2840 3145 7.872138 AGAACAAGGGGATACTAATGATGAAA 58.128 34.615 0.00 0.00 0.00 2.69
2904 3209 8.677300 TGATAAATCATGTACTTCCTTTTGAGC 58.323 33.333 0.00 0.00 0.00 4.26
2905 3210 6.899393 AAATCATGTACTTCCTTTTGAGCA 57.101 33.333 0.00 0.00 0.00 4.26
2915 3220 4.552166 TCCTTTTGAGCACGAAGAAAAG 57.448 40.909 0.00 0.00 35.89 2.27
3018 3323 5.710099 TGGATGTCCTTTTTCATTGGTACTC 59.290 40.000 0.09 0.00 36.82 2.59
3026 3331 8.098912 TCCTTTTTCATTGGTACTCTAGGTTAC 58.901 37.037 0.00 0.00 0.00 2.50
3027 3332 8.101419 CCTTTTTCATTGGTACTCTAGGTTACT 58.899 37.037 0.00 0.00 0.00 2.24
3084 3389 2.866762 GGCTTCAGCTAAATCCTACACG 59.133 50.000 0.00 0.00 41.70 4.49
3107 3412 4.506654 GTGTCTACATGTATTTACCGCTGG 59.493 45.833 5.91 0.00 0.00 4.85
3108 3413 3.493503 GTCTACATGTATTTACCGCTGGC 59.506 47.826 5.91 0.00 0.00 4.85
3118 3423 0.392461 TACCGCTGGCAGTGAAATCC 60.392 55.000 28.65 2.69 0.00 3.01
3293 3598 5.393243 CGTAAAATAATCGGAAAAGGCCCAA 60.393 40.000 0.00 0.00 0.00 4.12
3687 3992 1.835494 CCAGTACTCTCCGTCTTCCA 58.165 55.000 0.00 0.00 0.00 3.53
3943 4248 8.885722 TGGTTTCGGTTGTTATATAATCTCAAC 58.114 33.333 14.59 14.59 38.00 3.18
3974 4279 9.565213 CAAGAAGGAACTCATCATTTTTATGTC 57.435 33.333 0.00 0.00 38.49 3.06
3983 4288 7.596248 ACTCATCATTTTTATGTCACAACAAGC 59.404 33.333 0.00 0.00 39.30 4.01
3990 4295 1.550327 TGTCACAACAAGCCCACAAA 58.450 45.000 0.00 0.00 30.70 2.83
3991 4296 1.895798 TGTCACAACAAGCCCACAAAA 59.104 42.857 0.00 0.00 30.70 2.44
3992 4297 2.499289 TGTCACAACAAGCCCACAAAAT 59.501 40.909 0.00 0.00 30.70 1.82
3993 4298 3.701542 TGTCACAACAAGCCCACAAAATA 59.298 39.130 0.00 0.00 30.70 1.40
3994 4299 4.202101 TGTCACAACAAGCCCACAAAATAG 60.202 41.667 0.00 0.00 30.70 1.73
3995 4300 4.037446 GTCACAACAAGCCCACAAAATAGA 59.963 41.667 0.00 0.00 0.00 1.98
3996 4301 4.832266 TCACAACAAGCCCACAAAATAGAT 59.168 37.500 0.00 0.00 0.00 1.98
3997 4302 4.925054 CACAACAAGCCCACAAAATAGATG 59.075 41.667 0.00 0.00 0.00 2.90
3998 4303 4.832266 ACAACAAGCCCACAAAATAGATGA 59.168 37.500 0.00 0.00 0.00 2.92
3999 4304 5.304101 ACAACAAGCCCACAAAATAGATGAA 59.696 36.000 0.00 0.00 0.00 2.57
4000 4305 6.014327 ACAACAAGCCCACAAAATAGATGAAT 60.014 34.615 0.00 0.00 0.00 2.57
4001 4306 7.178274 ACAACAAGCCCACAAAATAGATGAATA 59.822 33.333 0.00 0.00 0.00 1.75
4002 4307 7.338800 ACAAGCCCACAAAATAGATGAATAG 57.661 36.000 0.00 0.00 0.00 1.73
4003 4308 7.118723 ACAAGCCCACAAAATAGATGAATAGA 58.881 34.615 0.00 0.00 0.00 1.98
4004 4309 7.781693 ACAAGCCCACAAAATAGATGAATAGAT 59.218 33.333 0.00 0.00 0.00 1.98
4005 4310 7.992754 AGCCCACAAAATAGATGAATAGATC 57.007 36.000 0.00 0.00 0.00 2.75
4006 4311 6.944862 AGCCCACAAAATAGATGAATAGATCC 59.055 38.462 0.00 0.00 0.00 3.36
4047 4352 3.634504 TGGATGGCTTTGTGATAATGCT 58.365 40.909 0.36 0.00 0.00 3.79
4155 4692 0.613260 AGGCTCTGTTCGGTATTGCA 59.387 50.000 0.00 0.00 0.00 4.08
4211 4748 4.321378 GCTTTTGCCCTATTTTACCGTTCA 60.321 41.667 0.00 0.00 40.15 3.18
4214 4751 4.023726 TGCCCTATTTTACCGTTCACTT 57.976 40.909 0.00 0.00 0.00 3.16
4216 4753 4.004982 GCCCTATTTTACCGTTCACTTGA 58.995 43.478 0.00 0.00 0.00 3.02
4217 4754 4.142752 GCCCTATTTTACCGTTCACTTGAC 60.143 45.833 0.00 0.00 0.00 3.18
4219 4756 4.998672 CCTATTTTACCGTTCACTTGACCA 59.001 41.667 0.00 0.00 0.00 4.02
4223 4760 5.838531 TTTACCGTTCACTTGACCAAAAT 57.161 34.783 0.00 0.00 0.00 1.82
4228 4765 3.728718 CGTTCACTTGACCAAAATTTCCG 59.271 43.478 0.00 0.00 0.00 4.30
4245 4782 7.778470 AATTTCCGACTTCTGTCAGATATTC 57.222 36.000 2.68 0.03 43.06 1.75
4253 4790 5.600484 ACTTCTGTCAGATATTCTTCCGGAT 59.400 40.000 4.15 0.00 0.00 4.18
4259 4796 6.127054 TGTCAGATATTCTTCCGGATCAGTTT 60.127 38.462 4.15 0.00 0.00 2.66
4273 4810 9.037737 TCCGGATCAGTTTATAAAATAAGTTCG 57.962 33.333 0.00 0.00 0.00 3.95
4275 4812 7.797123 CGGATCAGTTTATAAAATAAGTTCGGC 59.203 37.037 0.00 0.00 0.00 5.54
4276 4813 8.617809 GGATCAGTTTATAAAATAAGTTCGGCA 58.382 33.333 0.00 0.00 0.00 5.69
4285 4822 0.931702 TAAGTTCGGCACAACACACG 59.068 50.000 0.36 0.00 0.00 4.49
4309 4846 3.704566 CAGTGACTACATACTGGGCCTAA 59.295 47.826 4.53 0.00 40.38 2.69
4324 4861 1.270907 CCTAAGTCTGCCTGGTGTCT 58.729 55.000 0.00 0.00 0.00 3.41
4332 4869 3.096092 TCTGCCTGGTGTCTTTGTTTTT 58.904 40.909 0.00 0.00 0.00 1.94
4335 4872 3.186909 GCCTGGTGTCTTTGTTTTTGAC 58.813 45.455 0.00 0.00 0.00 3.18
4405 4946 6.524101 AGTCTGTTCTTCTAGTTCCTGATC 57.476 41.667 0.00 0.00 0.00 2.92
4425 4966 4.979943 TCTGTCTTGAGTATGAGCTCTG 57.020 45.455 16.19 0.00 36.51 3.35
4467 5008 3.249559 GCTCTAATTGCTTTCTGATCCCG 59.750 47.826 0.00 0.00 0.00 5.14
4502 5043 2.584835 TGACAAGTGGGCAGCTATTT 57.415 45.000 0.00 0.00 0.00 1.40
4574 5120 7.928706 GGATGTAATTACACTTGATAGTCTGCT 59.071 37.037 20.26 0.00 39.30 4.24
4585 5131 6.543831 ACTTGATAGTCTGCTTGAAAAACAGT 59.456 34.615 0.00 0.00 33.12 3.55
4620 5166 7.959175 TGTAATAGACCTACAGTTCTGTTGTT 58.041 34.615 10.74 0.00 0.00 2.83
4625 5171 5.992217 AGACCTACAGTTCTGTTGTTGATTC 59.008 40.000 10.74 1.60 0.00 2.52
4637 5183 7.216494 TCTGTTGTTGATTCTGAATGTAGTCA 58.784 34.615 7.78 0.00 0.00 3.41
4638 5184 7.714813 TCTGTTGTTGATTCTGAATGTAGTCAA 59.285 33.333 7.78 3.56 0.00 3.18
4639 5185 8.394971 TGTTGTTGATTCTGAATGTAGTCAAT 57.605 30.769 7.78 0.00 0.00 2.57
4640 5186 8.291740 TGTTGTTGATTCTGAATGTAGTCAATG 58.708 33.333 7.78 0.00 0.00 2.82
4641 5187 8.506437 GTTGTTGATTCTGAATGTAGTCAATGA 58.494 33.333 7.78 0.00 0.00 2.57
4643 5189 7.879677 TGTTGATTCTGAATGTAGTCAATGAGT 59.120 33.333 7.78 0.00 0.00 3.41
4644 5190 8.725148 GTTGATTCTGAATGTAGTCAATGAGTT 58.275 33.333 7.78 0.00 0.00 3.01
4646 5192 9.942850 TGATTCTGAATGTAGTCAATGAGTTTA 57.057 29.630 7.78 0.00 0.00 2.01
4649 5195 9.942850 TTCTGAATGTAGTCAATGAGTTTATGA 57.057 29.630 0.00 0.00 0.00 2.15
4650 5196 9.942850 TCTGAATGTAGTCAATGAGTTTATGAA 57.057 29.630 0.00 0.00 0.00 2.57
4652 5198 9.942850 TGAATGTAGTCAATGAGTTTATGAAGA 57.057 29.630 0.00 0.00 0.00 2.87
4805 5362 1.920835 GGTGGAGGGGACAAGCTCT 60.921 63.158 0.00 0.00 0.00 4.09
4871 5428 3.019564 GTTGGACCAATCAAGGGATCTG 58.980 50.000 10.83 0.00 31.88 2.90
4984 5541 0.311790 ACATTGCAACGCAGGTCAAG 59.688 50.000 0.00 0.00 40.61 3.02
5059 5619 4.406003 ACACAGTGGTAGATCAGTTATCCC 59.594 45.833 5.31 0.00 34.90 3.85
5486 6068 8.624776 GTGGAGATTTGTTTTCCCTTATCATAG 58.375 37.037 0.00 0.00 0.00 2.23
5563 6152 4.270084 TCTCTGCTTGTTGTAACGAAACTG 59.730 41.667 0.00 0.00 0.00 3.16
5566 6155 3.685272 TGCTTGTTGTAACGAAACTGTGA 59.315 39.130 0.00 0.00 0.00 3.58
5580 6169 3.505464 ACTGTGATACTTACGCTGGTC 57.495 47.619 0.00 0.00 0.00 4.02
5605 6202 2.278182 GACCTCTGACTCTGAGCGGC 62.278 65.000 4.19 0.00 0.00 6.53
5613 6210 2.357881 TCTGAGCGGCTGTTGCTG 60.358 61.111 7.50 0.00 44.18 4.41
5614 6211 2.667536 CTGAGCGGCTGTTGCTGT 60.668 61.111 7.50 0.00 46.77 4.40
5615 6212 2.203195 TGAGCGGCTGTTGCTGTT 60.203 55.556 7.50 0.00 46.77 3.16
5616 6213 2.253452 GAGCGGCTGTTGCTGTTG 59.747 61.111 7.50 0.00 46.77 3.33
5617 6214 2.516930 AGCGGCTGTTGCTGTTGT 60.517 55.556 0.00 0.00 46.77 3.32
5618 6215 2.050985 GCGGCTGTTGCTGTTGTC 60.051 61.111 0.00 0.00 46.77 3.18
5619 6216 2.546494 GCGGCTGTTGCTGTTGTCT 61.546 57.895 0.00 0.00 46.77 3.41
5620 6217 2.024918 CGGCTGTTGCTGTTGTCTT 58.975 52.632 0.00 0.00 40.53 3.01
5621 6218 0.381801 CGGCTGTTGCTGTTGTCTTT 59.618 50.000 0.00 0.00 40.53 2.52
5622 6219 1.597937 CGGCTGTTGCTGTTGTCTTTC 60.598 52.381 0.00 0.00 40.53 2.62
5623 6220 1.269257 GGCTGTTGCTGTTGTCTTTCC 60.269 52.381 0.00 0.00 39.59 3.13
5624 6221 1.597937 GCTGTTGCTGTTGTCTTTCCG 60.598 52.381 0.00 0.00 36.03 4.30
5625 6222 1.670811 CTGTTGCTGTTGTCTTTCCGT 59.329 47.619 0.00 0.00 0.00 4.69
5626 6223 1.400142 TGTTGCTGTTGTCTTTCCGTG 59.600 47.619 0.00 0.00 0.00 4.94
5627 6224 1.400494 GTTGCTGTTGTCTTTCCGTGT 59.600 47.619 0.00 0.00 0.00 4.49
5628 6225 1.745232 TGCTGTTGTCTTTCCGTGTT 58.255 45.000 0.00 0.00 0.00 3.32
5629 6226 1.400142 TGCTGTTGTCTTTCCGTGTTG 59.600 47.619 0.00 0.00 0.00 3.33
5630 6227 1.859998 GCTGTTGTCTTTCCGTGTTGC 60.860 52.381 0.00 0.00 0.00 4.17
5631 6228 1.670811 CTGTTGTCTTTCCGTGTTGCT 59.329 47.619 0.00 0.00 0.00 3.91
5632 6229 1.400142 TGTTGTCTTTCCGTGTTGCTG 59.600 47.619 0.00 0.00 0.00 4.41
5633 6230 0.380378 TTGTCTTTCCGTGTTGCTGC 59.620 50.000 0.00 0.00 0.00 5.25
5634 6231 0.463654 TGTCTTTCCGTGTTGCTGCT 60.464 50.000 0.00 0.00 0.00 4.24
5635 6232 0.040958 GTCTTTCCGTGTTGCTGCTG 60.041 55.000 0.00 0.00 0.00 4.41
5636 6233 0.179059 TCTTTCCGTGTTGCTGCTGA 60.179 50.000 0.00 0.00 0.00 4.26
5639 6236 2.401583 TTCCGTGTTGCTGCTGATAT 57.598 45.000 0.00 0.00 0.00 1.63
5914 6512 2.653130 GACGGTATTCGACGGGCG 60.653 66.667 0.00 0.00 42.43 6.13
5942 6540 1.381165 GGGGTGCACGGCGATTTAAT 61.381 55.000 16.62 0.00 0.00 1.40
6047 6645 1.444119 GGTCGTTGCAGCCTGAACAA 61.444 55.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.340617 TCGGTAAAATCTGGCCAAGAAAT 58.659 39.130 7.01 0.00 38.79 2.17
47 48 5.446143 AAGAAATGTTGCAATGTTCGGTA 57.554 34.783 0.59 0.00 0.00 4.02
108 110 1.337167 GCAACCAACTTTGATGGCCTC 60.337 52.381 3.32 0.00 41.89 4.70
210 217 0.036732 TCCCGCAGATGTTTGAAGCT 59.963 50.000 0.00 0.00 0.00 3.74
211 218 0.881118 TTCCCGCAGATGTTTGAAGC 59.119 50.000 0.00 0.00 0.00 3.86
212 219 1.135972 CGTTCCCGCAGATGTTTGAAG 60.136 52.381 0.00 0.00 0.00 3.02
213 220 0.871722 CGTTCCCGCAGATGTTTGAA 59.128 50.000 0.00 0.00 0.00 2.69
218 225 1.374252 GTGACGTTCCCGCAGATGT 60.374 57.895 0.00 0.00 37.70 3.06
257 276 9.995003 AATAAGAATAACAATTGAAAAGGTGCA 57.005 25.926 13.59 0.00 0.00 4.57
308 331 6.476706 TGTCTCAAACGAATGATAGCTATGTG 59.523 38.462 11.94 0.00 0.00 3.21
309 332 6.573434 TGTCTCAAACGAATGATAGCTATGT 58.427 36.000 11.94 0.00 0.00 2.29
341 364 4.823442 TCTCTGTTTGACAATGTTGAGCAT 59.177 37.500 0.00 0.00 40.03 3.79
363 386 9.447040 GAAACTGGTGTTTGAGTAATAGTTTTC 57.553 33.333 0.00 0.00 45.36 2.29
384 409 5.183228 TGGACTTTGAACTTTCGAGAAACT 58.817 37.500 0.00 0.00 0.00 2.66
385 410 5.479716 TGGACTTTGAACTTTCGAGAAAC 57.520 39.130 0.00 0.00 0.00 2.78
484 514 8.888716 TCAAGCCAACCTTTTTATTTTTCTTTC 58.111 29.630 0.00 0.00 0.00 2.62
494 524 2.301583 GCCCATCAAGCCAACCTTTTTA 59.698 45.455 0.00 0.00 0.00 1.52
526 556 5.704053 GCCTTCTCCTACACTCTATCTACTC 59.296 48.000 0.00 0.00 0.00 2.59
527 557 5.457052 GGCCTTCTCCTACACTCTATCTACT 60.457 48.000 0.00 0.00 0.00 2.57
528 558 4.763279 GGCCTTCTCCTACACTCTATCTAC 59.237 50.000 0.00 0.00 0.00 2.59
529 559 4.415846 TGGCCTTCTCCTACACTCTATCTA 59.584 45.833 3.32 0.00 0.00 1.98
540 570 1.987855 CCCGTGTGGCCTTCTCCTA 60.988 63.158 3.32 0.00 0.00 2.94
541 571 3.322466 CCCGTGTGGCCTTCTCCT 61.322 66.667 3.32 0.00 0.00 3.69
577 608 1.690633 TCTGCTCCCCCACCTGATC 60.691 63.158 0.00 0.00 0.00 2.92
578 609 1.692042 CTCTGCTCCCCCACCTGAT 60.692 63.158 0.00 0.00 0.00 2.90
579 610 2.284921 CTCTGCTCCCCCACCTGA 60.285 66.667 0.00 0.00 0.00 3.86
580 611 4.106925 GCTCTGCTCCCCCACCTG 62.107 72.222 0.00 0.00 0.00 4.00
581 612 4.664267 TGCTCTGCTCCCCCACCT 62.664 66.667 0.00 0.00 0.00 4.00
582 613 4.106925 CTGCTCTGCTCCCCCACC 62.107 72.222 0.00 0.00 0.00 4.61
583 614 3.005539 TCTGCTCTGCTCCCCCAC 61.006 66.667 0.00 0.00 0.00 4.61
584 615 2.686470 CTCTGCTCTGCTCCCCCA 60.686 66.667 0.00 0.00 0.00 4.96
585 616 2.364842 TCTCTGCTCTGCTCCCCC 60.365 66.667 0.00 0.00 0.00 5.40
586 617 3.092780 GCTCTCTGCTCTGCTCCCC 62.093 68.421 0.00 0.00 38.95 4.81
587 618 2.500646 GCTCTCTGCTCTGCTCCC 59.499 66.667 0.00 0.00 38.95 4.30
624 655 7.067251 TGTTTTACTCGTTTTGTATTGGGTCTT 59.933 33.333 0.00 0.00 0.00 3.01
736 768 1.299541 GGACGCAGAGAGAGAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
737 769 0.461163 CGGACGCAGAGAGAGAGAGA 60.461 60.000 0.00 0.00 0.00 3.10
777 809 2.615493 GCAGTGTAGTTACAGCATGGGT 60.615 50.000 0.00 0.00 43.62 4.51
803 835 0.677288 TGAGGTGTGGTACGAACTGG 59.323 55.000 0.00 0.00 0.00 4.00
804 836 2.607187 GATGAGGTGTGGTACGAACTG 58.393 52.381 0.00 0.00 0.00 3.16
817 849 1.022903 AGGAGGAGGAAGGATGAGGT 58.977 55.000 0.00 0.00 0.00 3.85
909 1204 2.279784 GATTCGGCGCTCCCTCTG 60.280 66.667 7.64 0.00 0.00 3.35
1539 1837 0.179161 CGAGGTTACAGTCGAGGCTG 60.179 60.000 2.81 2.81 38.50 4.85
1551 1849 0.896940 AGTCCTTGCGGTCGAGGTTA 60.897 55.000 0.00 0.00 43.25 2.85
1587 1885 1.753930 TGGATCGGCGTAGTAGTTGA 58.246 50.000 6.85 0.00 0.00 3.18
1590 1888 0.959553 CCATGGATCGGCGTAGTAGT 59.040 55.000 5.56 0.00 0.00 2.73
1593 1891 2.421739 GCCATGGATCGGCGTAGT 59.578 61.111 18.40 0.00 40.35 2.73
1635 1933 4.101448 GCGGCATGGTCAGAGGGT 62.101 66.667 0.00 0.00 0.00 4.34
1983 2281 5.430886 TCTGCAGCAAAGCTAATGATAGAA 58.569 37.500 9.47 0.00 36.40 2.10
2177 2478 7.439056 ACAAGCTATCAACATTTGAACAAAAGG 59.561 33.333 4.12 3.14 43.95 3.11
2178 2479 8.356533 ACAAGCTATCAACATTTGAACAAAAG 57.643 30.769 4.12 2.88 43.95 2.27
2231 2532 2.636830 CCTATCAGAGGCACAAAGTGG 58.363 52.381 0.00 0.00 38.96 4.00
2288 2589 9.717942 AATAAAAATATTAAGCAAGCAACCACA 57.282 25.926 0.00 0.00 0.00 4.17
2489 2794 3.639094 AGCTAGGATCGCTACATTTGACT 59.361 43.478 0.00 0.00 35.63 3.41
2586 2891 4.682787 GGGGCAAACTTAAGTAATGATGC 58.317 43.478 19.98 17.80 0.00 3.91
2642 2947 5.163713 GCCTTCAACTATGTCCATCAAAGTC 60.164 44.000 0.00 0.00 0.00 3.01
2738 3043 6.321181 GTGATCCATACTTTTCAAATAGGGCA 59.679 38.462 0.00 0.00 0.00 5.36
2749 3054 5.316167 TGTTGAGCTGTGATCCATACTTTT 58.684 37.500 0.00 0.00 0.00 2.27
2855 3160 8.352752 TCAGATAGTATTAACTGCAATTCGTG 57.647 34.615 0.00 0.00 36.36 4.35
2904 3209 4.131596 TGGTACCCTTTCTTTTCTTCGTG 58.868 43.478 10.07 0.00 0.00 4.35
2905 3210 4.426736 TGGTACCCTTTCTTTTCTTCGT 57.573 40.909 10.07 0.00 0.00 3.85
2915 3220 4.099419 CCATGCCTAATTTGGTACCCTTTC 59.901 45.833 10.07 0.00 0.00 2.62
2930 3235 6.263842 CAGCTATCATTCTTTTTCCATGCCTA 59.736 38.462 0.00 0.00 0.00 3.93
2975 3280 2.029649 CCATGGTGAGCTGAAAAACTGG 60.030 50.000 2.57 0.00 0.00 4.00
2978 3283 3.256631 ACATCCATGGTGAGCTGAAAAAC 59.743 43.478 12.58 0.00 0.00 2.43
3026 3331 8.039603 AGATTCGCATAGTAATCACTAGAGAG 57.960 38.462 0.00 0.00 40.57 3.20
3027 3332 7.987750 AGATTCGCATAGTAATCACTAGAGA 57.012 36.000 0.00 0.00 40.57 3.10
3084 3389 4.506654 CCAGCGGTAAATACATGTAGACAC 59.493 45.833 11.91 8.10 0.00 3.67
3107 3412 9.669353 CATAATATAAACTGTGGATTTCACTGC 57.331 33.333 2.09 0.00 45.53 4.40
3154 3459 9.359653 AGCATCTCTATATTTGCCAATTTTAGT 57.640 29.630 0.00 0.00 35.71 2.24
3231 3536 5.710513 ATGCTGCAATGTAAGAAGTTTCA 57.289 34.783 6.36 0.00 0.00 2.69
3264 3569 6.577427 GCCTTTTCCGATTATTTTACGCATAG 59.423 38.462 0.00 0.00 0.00 2.23
3276 3581 4.798882 ACATATTGGGCCTTTTCCGATTA 58.201 39.130 4.53 0.00 31.26 1.75
3594 3899 6.019656 ACATGAGACCACTCCTCTAGATAA 57.980 41.667 0.00 0.00 41.99 1.75
3687 3992 0.823460 CCTTTGCACCACCAACAACT 59.177 50.000 0.00 0.00 0.00 3.16
3943 4248 6.814506 AATGATGAGTTCCTTCTTGACAAG 57.185 37.500 9.03 9.03 0.00 3.16
3954 4259 8.081633 TGTTGTGACATAAAAATGATGAGTTCC 58.918 33.333 0.00 0.00 0.00 3.62
3974 4279 4.582701 TCTATTTTGTGGGCTTGTTGTG 57.417 40.909 0.00 0.00 0.00 3.33
3983 4288 8.874744 ATGGATCTATTCATCTATTTTGTGGG 57.125 34.615 0.00 0.00 0.00 4.61
3992 4297 9.942526 TGGAGCTTATATGGATCTATTCATCTA 57.057 33.333 0.00 0.00 0.00 1.98
3993 4298 8.851106 TGGAGCTTATATGGATCTATTCATCT 57.149 34.615 0.00 0.00 0.00 2.90
3994 4299 9.709495 GATGGAGCTTATATGGATCTATTCATC 57.291 37.037 0.00 0.00 0.00 2.92
3995 4300 8.658619 GGATGGAGCTTATATGGATCTATTCAT 58.341 37.037 0.00 0.00 0.00 2.57
3996 4301 7.071698 GGGATGGAGCTTATATGGATCTATTCA 59.928 40.741 0.00 0.00 0.00 2.57
3997 4302 7.292120 AGGGATGGAGCTTATATGGATCTATTC 59.708 40.741 0.00 0.00 0.00 1.75
3998 4303 7.072202 CAGGGATGGAGCTTATATGGATCTATT 59.928 40.741 0.00 0.00 0.00 1.73
3999 4304 6.558014 CAGGGATGGAGCTTATATGGATCTAT 59.442 42.308 0.00 0.00 0.00 1.98
4000 4305 5.901853 CAGGGATGGAGCTTATATGGATCTA 59.098 44.000 0.00 0.00 0.00 1.98
4001 4306 4.720773 CAGGGATGGAGCTTATATGGATCT 59.279 45.833 0.00 0.00 0.00 2.75
4002 4307 4.718774 TCAGGGATGGAGCTTATATGGATC 59.281 45.833 0.00 0.00 0.00 3.36
4003 4308 4.703299 TCAGGGATGGAGCTTATATGGAT 58.297 43.478 0.00 0.00 0.00 3.41
4004 4309 4.146245 TCAGGGATGGAGCTTATATGGA 57.854 45.455 0.00 0.00 0.00 3.41
4005 4310 4.778579 CATCAGGGATGGAGCTTATATGG 58.221 47.826 0.00 0.00 36.51 2.74
4029 4334 5.664294 TTTCAGCATTATCACAAAGCCAT 57.336 34.783 0.00 0.00 0.00 4.40
4155 4692 9.981460 AGACAAGAAGGATTATTAAAATCCACT 57.019 29.630 21.37 17.89 46.70 4.00
4175 4712 3.552890 GGGCAAAAGCTGGTTAAGACAAG 60.553 47.826 0.00 0.00 0.00 3.16
4205 4742 4.048504 GGAAATTTTGGTCAAGTGAACGG 58.951 43.478 0.00 0.00 33.57 4.44
4211 4748 4.887655 AGAAGTCGGAAATTTTGGTCAAGT 59.112 37.500 0.00 0.00 0.00 3.16
4214 4751 4.204012 ACAGAAGTCGGAAATTTTGGTCA 58.796 39.130 0.00 0.00 0.00 4.02
4216 4753 4.830826 GACAGAAGTCGGAAATTTTGGT 57.169 40.909 0.00 0.00 34.60 3.67
4228 4765 5.067936 TCCGGAAGAATATCTGACAGAAGTC 59.932 44.000 9.70 7.21 45.19 3.01
4253 4790 8.325421 TGTGCCGAACTTATTTTATAAACTGA 57.675 30.769 0.00 0.00 0.00 3.41
4259 4796 7.299586 GTGTGTTGTGCCGAACTTATTTTATA 58.700 34.615 0.00 0.00 0.00 0.98
4272 4809 2.171079 ACTGACGTGTGTTGTGCCG 61.171 57.895 0.00 0.00 0.00 5.69
4273 4810 1.087202 TCACTGACGTGTGTTGTGCC 61.087 55.000 0.00 0.00 41.89 5.01
4275 4812 1.640428 AGTCACTGACGTGTGTTGTG 58.360 50.000 0.00 0.00 41.89 3.33
4276 4813 2.164827 TGTAGTCACTGACGTGTGTTGT 59.835 45.455 0.00 0.00 41.89 3.32
4285 4822 2.159085 GGCCCAGTATGTAGTCACTGAC 60.159 54.545 0.38 0.38 43.99 3.51
4309 4846 0.839946 ACAAAGACACCAGGCAGACT 59.160 50.000 0.00 0.00 0.00 3.24
4364 4905 8.687292 AACAGACTATGTCATACGACCTTATA 57.313 34.615 0.00 0.00 43.00 0.98
4365 4906 7.502895 AGAACAGACTATGTCATACGACCTTAT 59.497 37.037 0.00 0.00 43.00 1.73
4405 4946 4.979943 TCAGAGCTCATACTCAAGACAG 57.020 45.455 17.77 0.00 39.26 3.51
4447 4988 3.199946 ACCGGGATCAGAAAGCAATTAGA 59.800 43.478 6.32 0.00 0.00 2.10
4467 5008 8.188139 CCCACTTGTCATTATGTATTTACAACC 58.812 37.037 0.00 0.00 39.99 3.77
4566 5112 4.816385 CAGGACTGTTTTTCAAGCAGACTA 59.184 41.667 7.27 0.00 34.60 2.59
4574 5120 3.013921 AGAACGCAGGACTGTTTTTCAA 58.986 40.909 0.82 0.00 0.00 2.69
4585 5131 3.362706 AGGTCTATTACAGAACGCAGGA 58.637 45.455 0.00 0.00 46.49 3.86
4620 5166 8.853077 AAACTCATTGACTACATTCAGAATCA 57.147 30.769 0.00 0.00 0.00 2.57
4648 5194 9.817809 TCAAGTGTAATTACATCCTATGTCTTC 57.182 33.333 20.72 4.25 43.67 2.87
4650 5196 9.770097 CATCAAGTGTAATTACATCCTATGTCT 57.230 33.333 20.72 8.21 43.67 3.41
4652 5198 8.494433 ACCATCAAGTGTAATTACATCCTATGT 58.506 33.333 20.72 10.56 46.92 2.29
4653 5199 8.908786 ACCATCAAGTGTAATTACATCCTATG 57.091 34.615 20.72 18.99 38.63 2.23
4805 5362 0.320050 TCGCAAGCTCATACACCACA 59.680 50.000 0.00 0.00 37.18 4.17
4871 5428 3.660111 GCTGCCACCGTGGACAAC 61.660 66.667 22.37 10.17 40.96 3.32
4984 5541 1.066002 TGAGTTTTCAAGCTGCACTGC 59.934 47.619 1.02 0.00 0.00 4.40
5486 6068 3.200593 CATCCAGCACGAGCAGGC 61.201 66.667 11.41 0.00 46.22 4.85
5500 6082 3.684788 AGGATTAACAACGCAGACACATC 59.315 43.478 0.00 0.00 0.00 3.06
5563 6152 1.197910 GCGACCAGCGTAAGTATCAC 58.802 55.000 0.00 0.00 43.41 3.06
5580 6169 2.179517 GAGTCAGAGGTCCACGCG 59.820 66.667 3.53 3.53 0.00 6.01
5583 6172 0.530288 GCTCAGAGTCAGAGGTCCAC 59.470 60.000 13.80 0.00 33.72 4.02
5605 6202 1.670811 ACGGAAAGACAACAGCAACAG 59.329 47.619 0.00 0.00 0.00 3.16
5612 6209 1.400142 CAGCAACACGGAAAGACAACA 59.600 47.619 0.00 0.00 0.00 3.33
5613 6210 1.859998 GCAGCAACACGGAAAGACAAC 60.860 52.381 0.00 0.00 0.00 3.32
5614 6211 0.380378 GCAGCAACACGGAAAGACAA 59.620 50.000 0.00 0.00 0.00 3.18
5615 6212 0.463654 AGCAGCAACACGGAAAGACA 60.464 50.000 0.00 0.00 0.00 3.41
5616 6213 0.040958 CAGCAGCAACACGGAAAGAC 60.041 55.000 0.00 0.00 0.00 3.01
5617 6214 0.179059 TCAGCAGCAACACGGAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
5618 6215 0.877071 ATCAGCAGCAACACGGAAAG 59.123 50.000 0.00 0.00 0.00 2.62
5619 6216 2.177394 TATCAGCAGCAACACGGAAA 57.823 45.000 0.00 0.00 0.00 3.13
5620 6217 2.401583 ATATCAGCAGCAACACGGAA 57.598 45.000 0.00 0.00 0.00 4.30
5621 6218 2.009051 CAATATCAGCAGCAACACGGA 58.991 47.619 0.00 0.00 0.00 4.69
5622 6219 1.532505 GCAATATCAGCAGCAACACGG 60.533 52.381 0.00 0.00 0.00 4.94
5623 6220 1.130938 TGCAATATCAGCAGCAACACG 59.869 47.619 0.00 0.00 37.02 4.49
5624 6221 2.925578 TGCAATATCAGCAGCAACAC 57.074 45.000 0.00 0.00 37.02 3.32
5631 6228 7.049754 TCTTCTCAATTACTGCAATATCAGCA 58.950 34.615 3.18 3.18 40.19 4.41
5632 6229 7.488187 TCTTCTCAATTACTGCAATATCAGC 57.512 36.000 0.00 0.00 37.59 4.26
5635 6232 9.674824 CCATTTCTTCTCAATTACTGCAATATC 57.325 33.333 0.00 0.00 0.00 1.63
5636 6233 9.193806 ACCATTTCTTCTCAATTACTGCAATAT 57.806 29.630 0.00 0.00 0.00 1.28
5639 6236 6.899393 ACCATTTCTTCTCAATTACTGCAA 57.101 33.333 0.00 0.00 0.00 4.08
5927 6525 0.931702 CGGTATTAAATCGCCGTGCA 59.068 50.000 0.00 0.00 39.41 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.