Multiple sequence alignment - TraesCS4D01G256100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G256100 chr4D 100.000 3251 0 0 1 3251 425226448 425229698 0 6004
1 TraesCS4D01G256100 chr4A 92.987 3294 178 26 1 3251 39543221 39539938 0 4754
2 TraesCS4D01G256100 chr4B 92.026 1831 105 19 1429 3251 520890772 520892569 0 2534
3 TraesCS4D01G256100 chr4B 93.786 1400 66 13 1 1385 520889376 520890769 0 2084


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G256100 chr4D 425226448 425229698 3250 False 6004 6004 100.000 1 3251 1 chr4D.!!$F1 3250
1 TraesCS4D01G256100 chr4A 39539938 39543221 3283 True 4754 4754 92.987 1 3251 1 chr4A.!!$R1 3250
2 TraesCS4D01G256100 chr4B 520889376 520892569 3193 False 2309 2534 92.906 1 3251 2 chr4B.!!$F1 3250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 404 0.846693 ATGGGCAATACCAGGAGGAC 59.153 55.000 0.00 0.0 45.2 3.85 F
774 792 1.000843 GGAAAAAGAGGCGGCAAATGT 59.999 47.619 13.08 0.0 0.0 2.71 F
895 913 1.179174 GGCCACCTTCCTCGCTTTTT 61.179 55.000 0.00 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1502 0.109532 TTTCACCACCTCGCATCCAA 59.890 50.0 0.0 0.0 0.00 3.53 R
1808 1860 0.247736 AGTCTCCTGCCGTTTAGCTG 59.752 55.0 0.0 0.0 0.00 4.24 R
2402 2454 0.250467 CACTGTCCCTCACCAAGTGG 60.250 60.0 0.0 0.0 42.17 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.894784 TCTGTTGTCACTGGAAAGATACC 58.105 43.478 0.00 0.00 0.00 2.73
31 32 4.346709 TCTGTTGTCACTGGAAAGATACCA 59.653 41.667 0.00 0.00 35.96 3.25
40 41 2.846206 TGGAAAGATACCATCTGCAGGT 59.154 45.455 15.13 2.68 40.13 4.00
57 58 3.820557 CAGGTCAAAAAGAGGAGAACCA 58.179 45.455 0.00 0.00 38.94 3.67
147 151 6.646267 TGACTTTACAGAATATTAGGCCGTT 58.354 36.000 0.00 0.00 0.00 4.44
277 281 2.505982 CTGGATTGCCCGGATCGT 59.494 61.111 0.73 0.00 44.44 3.73
375 379 4.499019 CGCCAGTAACAAATTTGAACCACT 60.499 41.667 24.64 16.23 0.00 4.00
400 404 0.846693 ATGGGCAATACCAGGAGGAC 59.153 55.000 0.00 0.00 45.20 3.85
468 472 2.111613 CTCCTCCATCCTCTATCCCTGT 59.888 54.545 0.00 0.00 0.00 4.00
606 621 5.071250 TGGGTGAAGTTGTATCAGTTACACT 59.929 40.000 0.00 0.00 40.53 3.55
625 642 6.942532 ACACTGATTTACTGCTTTCTGAAA 57.057 33.333 2.44 2.44 0.00 2.69
633 650 6.560253 TTACTGCTTTCTGAAATCTGAACC 57.440 37.500 14.89 0.00 34.31 3.62
774 792 1.000843 GGAAAAAGAGGCGGCAAATGT 59.999 47.619 13.08 0.00 0.00 2.71
894 912 1.603739 GGCCACCTTCCTCGCTTTT 60.604 57.895 0.00 0.00 0.00 2.27
895 913 1.179174 GGCCACCTTCCTCGCTTTTT 61.179 55.000 0.00 0.00 0.00 1.94
1032 1051 1.586028 GTTGCATCACCCGTTGCAT 59.414 52.632 0.00 0.00 44.99 3.96
1058 1077 4.551702 TGCACTGCCTGTCTTTATCTTA 57.448 40.909 0.00 0.00 0.00 2.10
1091 1110 1.609072 GGTCTCAAGGAAGCAAACCAC 59.391 52.381 0.00 0.00 0.00 4.16
1115 1134 2.972505 CAACGCCGGTGCTGAAGT 60.973 61.111 16.69 0.00 34.43 3.01
1117 1143 2.542907 AACGCCGGTGCTGAAGTTG 61.543 57.895 16.69 0.00 34.43 3.16
1120 1146 1.282875 GCCGGTGCTGAAGTTGAAC 59.717 57.895 1.90 0.00 33.53 3.18
1142 1172 1.620819 GTCTCACCTTCTGAGCTTGGA 59.379 52.381 0.00 0.00 45.64 3.53
1164 1194 2.032528 TTGCAAGCGGTGGAGAGG 59.967 61.111 0.00 0.00 0.00 3.69
1209 1239 2.856032 CTGGCTTTGCTCGTCGTG 59.144 61.111 0.00 0.00 0.00 4.35
1212 1242 4.430423 GCTTTGCTCGTCGTGGCG 62.430 66.667 0.00 0.00 0.00 5.69
1340 1370 1.620819 TCTCTCTTGCCCTCTTGTCAC 59.379 52.381 0.00 0.00 0.00 3.67
1352 1393 4.039245 CCCTCTTGTCACTTGTAGTTCAGA 59.961 45.833 0.00 0.00 0.00 3.27
1365 1406 2.474410 GTTCAGATGAACCCCGTTCT 57.526 50.000 13.59 0.00 46.42 3.01
1400 1441 4.820173 CCCGTTTGGTTTAGAGAGAAAAGT 59.180 41.667 0.00 0.00 0.00 2.66
1427 1468 1.281899 GCTTTAGCAGCTAGTGTCCG 58.718 55.000 1.49 0.00 46.27 4.79
1514 1555 5.525378 AGTCCGACATGATAAAGCAAATCTC 59.475 40.000 0.00 0.00 0.00 2.75
1547 1594 9.997172 ATATCTTTTTATTTTGGGTCTTCTCCT 57.003 29.630 0.00 0.00 0.00 3.69
1548 1595 7.761038 TCTTTTTATTTTGGGTCTTCTCCTC 57.239 36.000 0.00 0.00 0.00 3.71
1549 1596 7.526918 TCTTTTTATTTTGGGTCTTCTCCTCT 58.473 34.615 0.00 0.00 0.00 3.69
1550 1597 7.665974 TCTTTTTATTTTGGGTCTTCTCCTCTC 59.334 37.037 0.00 0.00 0.00 3.20
1639 1691 3.009143 AGCGAGGTTCCCAAAGTTATCTT 59.991 43.478 0.00 0.00 35.14 2.40
1641 1693 3.617263 CGAGGTTCCCAAAGTTATCTTCG 59.383 47.826 0.00 0.00 32.90 3.79
1682 1734 1.595466 TTCCGTTACGTTTGCATGGT 58.405 45.000 3.52 0.00 0.00 3.55
1779 1831 2.351157 GGCTTGACATCTGAACTGCAAC 60.351 50.000 0.00 0.00 0.00 4.17
1808 1860 1.067582 CCGGACTATGGAACCGCTC 59.932 63.158 0.00 0.00 44.45 5.03
1844 1896 4.323104 GGAGACTAAAGGTGTGCATTCTCT 60.323 45.833 0.00 0.00 30.23 3.10
1845 1897 4.573900 AGACTAAAGGTGTGCATTCTCTG 58.426 43.478 0.00 0.00 0.00 3.35
1846 1898 4.284490 AGACTAAAGGTGTGCATTCTCTGA 59.716 41.667 0.00 0.00 0.00 3.27
1866 1918 4.127171 TGACAGACAGAACCTGTAAAAGC 58.873 43.478 0.00 0.00 45.44 3.51
1891 1943 6.203530 CACACTACATTTCTTCACACATCAGT 59.796 38.462 0.00 0.00 0.00 3.41
2001 2053 7.800300 ACTCTGAAGGAAGAATACCTAAGTT 57.200 36.000 0.00 0.00 36.67 2.66
2021 2073 7.506328 AAGTTGTGTTCCTTGTATACCTTTC 57.494 36.000 0.00 0.00 0.00 2.62
2037 2089 2.358322 TTTCCCAGGAAAGTGGACAC 57.642 50.000 7.79 0.00 40.44 3.67
2039 2091 1.302511 CCCAGGAAAGTGGACACGG 60.303 63.158 0.00 0.00 40.44 4.94
2046 2098 1.869132 GAAAGTGGACACGGTGTTACC 59.131 52.381 15.94 13.18 36.20 2.85
2061 2113 4.282703 GGTGTTACCAACAGGAAGACTAGA 59.717 45.833 0.00 0.00 43.10 2.43
2076 2128 8.091449 AGGAAGACTAGAAACTTACAAGATGTG 58.909 37.037 0.00 0.00 30.17 3.21
2130 2182 2.027192 TCCAAGCTCGAAGGCAAGTATT 60.027 45.455 0.00 0.00 34.17 1.89
2226 2278 2.390599 GGATGCGCGTTCTGCTCAA 61.391 57.895 8.43 0.00 42.47 3.02
2236 2288 2.124819 CTGCTCAATCCGCTGCCT 60.125 61.111 0.00 0.00 0.00 4.75
2287 2339 1.275291 TCCAGAGGCGGTACTTGAAAG 59.725 52.381 0.00 0.00 0.00 2.62
2315 2367 4.998051 AGAACCACCATATGTCCAAAGTT 58.002 39.130 1.24 0.00 0.00 2.66
2328 2380 6.377327 TGTCCAAAGTTTTCTCTGATGTTC 57.623 37.500 0.00 0.00 0.00 3.18
2329 2381 5.299279 TGTCCAAAGTTTTCTCTGATGTTCC 59.701 40.000 0.00 0.00 0.00 3.62
2333 2385 5.424121 AAGTTTTCTCTGATGTTCCGTTG 57.576 39.130 0.00 0.00 0.00 4.10
2354 2406 3.486474 TGTGTGTCGTATGTGTGTTTACG 59.514 43.478 0.00 0.00 41.85 3.18
2366 2418 4.201832 TGTGTGTTTACGCAAAGTACTTGG 60.202 41.667 9.34 7.35 43.81 3.61
2378 2430 3.439857 AGTACTTGGATGGTGCATGTT 57.560 42.857 0.00 0.00 29.61 2.71
2402 2454 5.296780 TCTTTGATGTCTCAGTGTTTGGAAC 59.703 40.000 0.00 0.00 31.68 3.62
2426 2478 2.097110 TGGTGAGGGACAGTGTTAGT 57.903 50.000 0.00 0.00 0.00 2.24
2432 2484 5.512576 GGTGAGGGACAGTGTTAGTTGTATT 60.513 44.000 0.00 0.00 0.00 1.89
2484 2536 6.418057 AATCTTGAGGGCATACTTCTAGAG 57.582 41.667 0.00 0.00 0.00 2.43
2495 2547 8.108364 GGGCATACTTCTAGAGTAGATAAGGTA 58.892 40.741 0.00 0.00 43.79 3.08
2502 2554 6.297582 TCTAGAGTAGATAAGGTACCAGCAC 58.702 44.000 15.94 2.89 0.00 4.40
2530 2582 0.462759 GGCACCTAGGTAAGCTGCAG 60.463 60.000 15.80 10.11 0.00 4.41
2535 2587 2.761208 ACCTAGGTAAGCTGCAGTACTG 59.239 50.000 14.41 18.93 0.00 2.74
2553 2605 7.904977 GCAGTACTGTTGTCATATGTAAATGTG 59.095 37.037 23.44 0.00 0.00 3.21
2611 2666 6.634436 CAGAACTGTTTACTGAATTCTTGTGC 59.366 38.462 7.05 2.78 34.07 4.57
2652 2707 5.241506 TGAAGCAGTTACCCAATTTTCAGAG 59.758 40.000 0.00 0.00 0.00 3.35
2683 2738 9.678260 ATCAGTATTGGAATATCTATTTCCAGC 57.322 33.333 5.40 1.88 30.37 4.85
2696 2751 2.488204 TTCCAGCGTGAATCATTGGA 57.512 45.000 9.14 9.14 36.21 3.53
2727 2783 6.567602 ATTCACCAATCTAAGCCTCTTAGT 57.432 37.500 11.88 0.25 0.00 2.24
2824 2881 7.223584 CAAACATTCCCCCAAAAGTTTATTCT 58.776 34.615 0.00 0.00 29.75 2.40
2837 2894 8.413229 CAAAAGTTTATTCTTCCACTTCTTCCA 58.587 33.333 0.00 0.00 0.00 3.53
2838 2895 7.511959 AAGTTTATTCTTCCACTTCTTCCAC 57.488 36.000 0.00 0.00 0.00 4.02
2843 2900 1.072965 CTTCCACTTCTTCCACCAGCT 59.927 52.381 0.00 0.00 0.00 4.24
2857 2914 4.962362 TCCACCAGCTATCTGTAAAGATGA 59.038 41.667 5.60 0.00 38.66 2.92
2898 2955 4.141367 TGAAGGTGGTATTGTCAAACCAGA 60.141 41.667 15.61 0.00 46.19 3.86
3105 3162 9.295825 AGTCAAAAATATACAAACATGTCCTGA 57.704 29.630 13.34 0.00 0.00 3.86
3178 3235 4.194640 GTGACATCCTATTGAGCACATGT 58.805 43.478 0.00 0.00 0.00 3.21
3242 3299 4.041049 TGTGTTAATCAGCAAACAAAGCG 58.959 39.130 0.00 0.00 37.35 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.415212 TCCTCTTTTTGACCTGCAGATG 58.585 45.455 17.39 1.02 0.00 2.90
31 32 3.328931 TCTCCTCTTTTTGACCTGCAGAT 59.671 43.478 17.39 0.00 0.00 2.90
40 41 4.277476 TGCTTTGGTTCTCCTCTTTTTGA 58.723 39.130 0.00 0.00 34.23 2.69
57 58 6.190954 GGAACCAAAACGATATACTGCTTT 57.809 37.500 0.00 0.00 0.00 3.51
126 130 6.018180 GGTGAACGGCCTAATATTCTGTAAAG 60.018 42.308 0.00 0.00 0.00 1.85
147 151 1.189524 AAGAATGGTCCCGTCGGTGA 61.190 55.000 11.06 4.40 0.00 4.02
186 190 4.057432 GCTGCAAAACACAACCACAATAT 58.943 39.130 0.00 0.00 0.00 1.28
277 281 2.571757 CCTTCTAGGTCGCACGCA 59.428 61.111 0.00 0.00 0.00 5.24
375 379 3.059853 TCCTGGTATTGCCCATCCAATA 58.940 45.455 0.00 0.00 36.80 1.90
400 404 8.624776 GGTATTGTCCTGAATTATCTTTCCTTG 58.375 37.037 0.00 0.00 0.00 3.61
606 621 7.984422 TCAGATTTCAGAAAGCAGTAAATCA 57.016 32.000 13.54 0.00 38.45 2.57
618 633 4.012374 GCATCAGGGTTCAGATTTCAGAA 58.988 43.478 0.00 0.00 0.00 3.02
662 679 3.735746 GCACAGAAACCTGTAATGTTTGC 59.264 43.478 0.00 0.00 42.60 3.68
687 704 2.027561 CCAGGGTTTTCGGTGATACAGA 60.028 50.000 0.00 0.00 0.00 3.41
723 740 5.619132 TCCTATGCAATCTCATGAACAGA 57.381 39.130 0.00 0.00 0.00 3.41
815 833 1.602311 CAAGCTCTTGCAGGTCTTGT 58.398 50.000 18.16 0.00 42.74 3.16
894 912 0.829602 TGCAGGAAAAATGGCCGGAA 60.830 50.000 5.05 0.00 0.00 4.30
895 913 1.228706 TGCAGGAAAAATGGCCGGA 60.229 52.632 5.05 0.00 0.00 5.14
1058 1077 1.979693 GAGACCGTCTCCTGGCTGT 60.980 63.158 16.58 0.00 37.55 4.40
1091 1110 2.637025 CACCGGCGTTGGTTCTTG 59.363 61.111 6.01 0.00 41.38 3.02
1115 1134 2.036387 TCAGAAGGTGAGACGGTTCAA 58.964 47.619 0.00 0.00 0.00 2.69
1142 1172 2.281761 CCACCGCTTGCAAGGTCT 60.282 61.111 27.10 3.13 39.00 3.85
1164 1194 2.923854 CGCTTCATCGCCATCGTC 59.076 61.111 0.00 0.00 36.96 4.20
1209 1239 4.060038 TTCCCTCCGACGAACGCC 62.060 66.667 0.00 0.00 41.07 5.68
1212 1242 1.080025 CAGGTTCCCTCCGACGAAC 60.080 63.158 0.00 0.00 38.10 3.95
1352 1393 2.951229 AGAAACAGAACGGGGTTCAT 57.049 45.000 10.74 0.00 44.11 2.57
1357 1398 2.143925 GACAGAAGAAACAGAACGGGG 58.856 52.381 0.00 0.00 0.00 5.73
1360 1401 1.792949 CGGGACAGAAGAAACAGAACG 59.207 52.381 0.00 0.00 0.00 3.95
1365 1406 2.294074 CCAAACGGGACAGAAGAAACA 58.706 47.619 0.00 0.00 40.01 2.83
1427 1468 1.098712 TCGAACCAAGCACCAACACC 61.099 55.000 0.00 0.00 0.00 4.16
1461 1502 0.109532 TTTCACCACCTCGCATCCAA 59.890 50.000 0.00 0.00 0.00 3.53
1545 1592 3.003480 GACCCAATCGTCAAAAGAGAGG 58.997 50.000 0.00 0.00 32.74 3.69
1546 1593 3.003480 GGACCCAATCGTCAAAAGAGAG 58.997 50.000 0.00 0.00 34.24 3.20
1547 1594 2.637872 AGGACCCAATCGTCAAAAGAGA 59.362 45.455 0.00 0.00 34.24 3.10
1548 1595 3.003480 GAGGACCCAATCGTCAAAAGAG 58.997 50.000 0.00 0.00 41.13 2.85
1549 1596 2.637872 AGAGGACCCAATCGTCAAAAGA 59.362 45.455 0.00 0.00 43.45 2.52
1550 1597 3.059352 AGAGGACCCAATCGTCAAAAG 57.941 47.619 0.00 0.00 43.45 2.27
1589 1640 5.705609 TCCTACAAACATTTCCTTCAAGC 57.294 39.130 0.00 0.00 0.00 4.01
1639 1691 5.434408 TCTAACAGTCTATTGGAGCTACGA 58.566 41.667 0.00 0.00 0.00 3.43
1641 1693 7.149307 GGAATCTAACAGTCTATTGGAGCTAC 58.851 42.308 0.00 0.00 0.00 3.58
1682 1734 1.028905 CCGAAGAAACCAGCACCAAA 58.971 50.000 0.00 0.00 0.00 3.28
1779 1831 0.469917 ATAGTCCGGGTCTGCATTGG 59.530 55.000 0.00 0.00 0.00 3.16
1808 1860 0.247736 AGTCTCCTGCCGTTTAGCTG 59.752 55.000 0.00 0.00 0.00 4.24
1844 1896 4.127171 GCTTTTACAGGTTCTGTCTGTCA 58.873 43.478 3.65 0.00 41.21 3.58
1845 1897 4.024809 GTGCTTTTACAGGTTCTGTCTGTC 60.025 45.833 3.65 0.00 41.21 3.51
1846 1898 3.877508 GTGCTTTTACAGGTTCTGTCTGT 59.122 43.478 3.65 0.00 41.21 3.41
1866 1918 6.203530 ACTGATGTGTGAAGAAATGTAGTGTG 59.796 38.462 0.00 0.00 0.00 3.82
2001 2053 4.351407 TGGGAAAGGTATACAAGGAACACA 59.649 41.667 5.01 0.00 0.00 3.72
2021 2073 1.302511 CCGTGTCCACTTTCCTGGG 60.303 63.158 0.00 0.00 31.41 4.45
2046 2098 7.926555 TCTTGTAAGTTTCTAGTCTTCCTGTTG 59.073 37.037 0.00 0.00 0.00 3.33
2061 2113 5.376625 TCAGCCTTCACATCTTGTAAGTTT 58.623 37.500 0.00 0.00 0.00 2.66
2076 2128 2.237392 AGGTTGGTAGTCATCAGCCTTC 59.763 50.000 0.00 0.00 40.87 3.46
2130 2182 2.127839 CTCGATTGGAGCTGGCCTA 58.872 57.895 3.32 0.00 35.63 3.93
2226 2278 2.364842 ACAGGAGAGGCAGCGGAT 60.365 61.111 0.00 0.00 0.00 4.18
2236 2288 1.545841 TTCAGCTAAGCGACAGGAGA 58.454 50.000 0.00 0.00 0.00 3.71
2287 2339 6.174720 TGGACATATGGTGGTTCTCTAATC 57.825 41.667 7.80 0.00 0.00 1.75
2315 2367 3.559655 CACACAACGGAACATCAGAGAAA 59.440 43.478 0.00 0.00 0.00 2.52
2328 2380 1.191425 CACACATACGACACACAACGG 59.809 52.381 0.00 0.00 0.00 4.44
2329 2381 1.855978 ACACACATACGACACACAACG 59.144 47.619 0.00 0.00 0.00 4.10
2333 2385 3.659876 GCGTAAACACACATACGACACAC 60.660 47.826 9.27 0.00 45.77 3.82
2354 2406 1.885887 TGCACCATCCAAGTACTTTGC 59.114 47.619 17.05 17.05 35.37 3.68
2356 2408 3.766545 ACATGCACCATCCAAGTACTTT 58.233 40.909 5.07 0.00 0.00 2.66
2366 2418 4.157289 AGACATCAAAGAACATGCACCATC 59.843 41.667 0.00 0.00 0.00 3.51
2378 2430 5.034852 TCCAAACACTGAGACATCAAAGA 57.965 39.130 0.00 0.00 34.23 2.52
2402 2454 0.250467 CACTGTCCCTCACCAAGTGG 60.250 60.000 0.00 0.00 42.17 4.00
2426 2478 6.071984 ACTAATTGACCACCCACAAATACAA 58.928 36.000 0.00 0.00 0.00 2.41
2432 2484 3.866703 TGACTAATTGACCACCCACAA 57.133 42.857 0.00 0.00 0.00 3.33
2475 2527 6.999871 GCTGGTACCTTATCTACTCTAGAAGT 59.000 42.308 14.36 0.00 42.33 3.01
2476 2528 6.999272 TGCTGGTACCTTATCTACTCTAGAAG 59.001 42.308 14.36 0.00 38.50 2.85
2484 2536 7.371936 CAGAATAGTGCTGGTACCTTATCTAC 58.628 42.308 14.36 4.08 0.00 2.59
2502 2554 1.807814 ACCTAGGTGCCCCAGAATAG 58.192 55.000 15.42 0.00 0.00 1.73
2611 2666 0.817634 TCAACCAAGCACCAAGGTCG 60.818 55.000 0.00 0.00 33.74 4.79
2639 2694 8.970859 ATACTGATAGTTCTCTGAAAATTGGG 57.029 34.615 0.00 0.00 0.00 4.12
2672 2727 4.576053 CCAATGATTCACGCTGGAAATAGA 59.424 41.667 5.67 0.00 0.00 1.98
2683 2738 2.426522 ACACCTGTCCAATGATTCACG 58.573 47.619 0.00 0.00 0.00 4.35
2710 2766 5.278561 CGGACCTACTAAGAGGCTTAGATTG 60.279 48.000 18.20 9.42 40.65 2.67
2727 2783 1.004679 GCGTTCCAAACCGGACCTA 60.005 57.895 9.46 0.00 46.36 3.08
2824 2881 1.140312 AGCTGGTGGAAGAAGTGGAA 58.860 50.000 0.00 0.00 0.00 3.53
2837 2894 5.604231 TCCATCATCTTTACAGATAGCTGGT 59.396 40.000 13.45 0.71 46.60 4.00
2838 2895 6.106648 TCCATCATCTTTACAGATAGCTGG 57.893 41.667 13.45 7.00 46.60 4.85
2843 2900 9.904198 TTGTCAAATCCATCATCTTTACAGATA 57.096 29.630 0.00 0.00 37.71 1.98
2857 2914 5.256474 CCTTCAGTAGGTTGTCAAATCCAT 58.744 41.667 0.00 0.00 39.39 3.41
2913 2970 7.111353 CACTTAGAGCTTAAGTGTCAACTTC 57.889 40.000 25.13 0.00 43.34 3.01
3101 3158 5.577945 GGTGATTGTGCAAAATGTAATCAGG 59.422 40.000 6.90 0.00 0.00 3.86
3105 3162 6.624861 CGGTAGGTGATTGTGCAAAATGTAAT 60.625 38.462 6.90 0.00 0.00 1.89
3195 3252 8.689972 CATGATCCTTAGTTTCTAAGGCAAATT 58.310 33.333 23.16 10.50 42.83 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.