Multiple sequence alignment - TraesCS4D01G255600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G255600 chr4D 100.000 5570 0 0 921 6490 424473639 424468070 0.000000e+00 10286
1 TraesCS4D01G255600 chr4D 100.000 715 0 0 1 715 424474559 424473845 0.000000e+00 1321
2 TraesCS4D01G255600 chr4B 92.981 4630 212 52 1893 6490 520403084 520398536 0.000000e+00 6645
3 TraesCS4D01G255600 chr4B 93.991 932 33 14 939 1868 520403989 520403079 0.000000e+00 1389
4 TraesCS4D01G255600 chr4B 94.429 359 18 2 357 715 520404383 520404027 9.510000e-153 551
5 TraesCS4D01G255600 chr4A 93.059 2334 99 21 4174 6490 40248790 40251077 0.000000e+00 3354
6 TraesCS4D01G255600 chr4A 91.692 2299 129 35 1893 4178 40246383 40248632 0.000000e+00 3131
7 TraesCS4D01G255600 chr4A 91.800 939 44 21 939 1871 40245481 40246392 0.000000e+00 1277
8 TraesCS4D01G255600 chr4A 88.267 375 14 9 361 715 40245076 40245440 7.780000e-114 422
9 TraesCS4D01G255600 chr4A 86.829 205 24 1 14 215 740674148 740673944 6.550000e-55 226
10 TraesCS4D01G255600 chr1A 82.516 1081 140 32 2751 3790 395197356 395196284 0.000000e+00 904
11 TraesCS4D01G255600 chr2A 82.080 1077 142 35 2753 3788 473412703 473413769 0.000000e+00 872
12 TraesCS4D01G255600 chr2A 81.642 1084 140 37 2751 3791 10336765 10337832 0.000000e+00 845
13 TraesCS4D01G255600 chr2A 85.441 261 29 8 2744 3001 673421076 673421330 4.990000e-66 263
14 TraesCS4D01G255600 chr2D 82.220 1063 134 28 2749 3791 337544582 337543555 0.000000e+00 865
15 TraesCS4D01G255600 chr2B 88.000 250 27 3 2743 2991 154933541 154933294 6.360000e-75 292
16 TraesCS4D01G255600 chr6A 89.286 224 23 1 2751 2973 479887549 479887326 4.960000e-71 279
17 TraesCS4D01G255600 chr6A 85.892 241 30 3 2751 2988 445970173 445970412 3.000000e-63 254
18 TraesCS4D01G255600 chr3D 86.475 244 31 2 2751 2993 253508228 253507986 3.860000e-67 267
19 TraesCS4D01G255600 chr3D 86.000 250 30 4 2753 3001 68883680 68883925 4.990000e-66 263
20 TraesCS4D01G255600 chr3D 84.390 205 29 2 14 215 560874647 560874443 1.430000e-46 198
21 TraesCS4D01G255600 chr3A 85.656 244 33 2 2751 2993 336593985 336593743 8.350000e-64 255
22 TraesCS4D01G255600 chr5B 86.341 205 25 1 14 215 65551058 65551262 3.050000e-53 220
23 TraesCS4D01G255600 chr1B 86.500 200 23 3 20 215 359227955 359227756 3.940000e-52 217
24 TraesCS4D01G255600 chr7A 89.143 175 15 3 14 184 94312307 94312133 1.420000e-51 215
25 TraesCS4D01G255600 chr3B 84.951 206 26 4 14 215 345020021 345020225 3.070000e-48 204
26 TraesCS4D01G255600 chr6D 83.981 206 29 3 14 215 323001801 323001596 1.850000e-45 195
27 TraesCS4D01G255600 chr7D 83.981 206 25 5 14 215 596884050 596883849 2.390000e-44 191
28 TraesCS4D01G255600 chr5A 82.547 212 34 1 14 222 632367076 632366865 4.000000e-42 183
29 TraesCS4D01G255600 chr5D 85.507 138 11 5 2945 3081 9947775 9947904 1.140000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G255600 chr4D 424468070 424474559 6489 True 5803.500000 10286 100.000000 1 6490 2 chr4D.!!$R1 6489
1 TraesCS4D01G255600 chr4B 520398536 520404383 5847 True 2861.666667 6645 93.800333 357 6490 3 chr4B.!!$R1 6133
2 TraesCS4D01G255600 chr4A 40245076 40251077 6001 False 2046.000000 3354 91.204500 361 6490 4 chr4A.!!$F1 6129
3 TraesCS4D01G255600 chr1A 395196284 395197356 1072 True 904.000000 904 82.516000 2751 3790 1 chr1A.!!$R1 1039
4 TraesCS4D01G255600 chr2A 473412703 473413769 1066 False 872.000000 872 82.080000 2753 3788 1 chr2A.!!$F2 1035
5 TraesCS4D01G255600 chr2A 10336765 10337832 1067 False 845.000000 845 81.642000 2751 3791 1 chr2A.!!$F1 1040
6 TraesCS4D01G255600 chr2D 337543555 337544582 1027 True 865.000000 865 82.220000 2749 3791 1 chr2D.!!$R1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.038159 CGAGGAGAAGGTCACCACAC 60.038 60.0 0.00 0.0 28.86 3.82 F
248 249 0.250295 TTGCCTACATATGCTCGGGC 60.250 55.0 0.00 0.0 39.93 6.13 F
263 264 0.394352 CGGGCAGGCCTAGTTGAAAT 60.394 55.0 3.98 0.0 36.10 2.17 F
1617 1645 0.398318 AGGTTGGAGACTTGGAGTGC 59.602 55.0 0.00 0.0 0.00 4.40 F
2279 2309 0.106918 TCAAAAACAGGGGAGTGCGT 60.107 50.0 0.00 0.0 0.00 5.24 F
2820 2851 0.539986 TTCCACTAGAATGGGTCGGC 59.460 55.0 0.00 0.0 40.49 5.54 F
3618 3717 0.387929 AAGTCGAGCGAACTGTTCCA 59.612 50.0 14.48 0.0 0.00 3.53 F
4435 4719 0.598065 GTTGGCCCAGTTTACAGCAG 59.402 55.0 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 1347 0.176680 AGCGCGGATGATGAGAAACT 59.823 50.000 8.83 0.00 0.00 2.66 R
1544 1572 1.556911 CAACAGATGGAGTGCCTAGGT 59.443 52.381 11.31 0.00 34.31 3.08 R
1659 1688 1.881903 CGTTCTGAGCTGAGGCAGGA 61.882 60.000 0.00 0.00 41.70 3.86 R
3033 3097 2.025793 TGTGTTTCCTGGGTGTTCTTCA 60.026 45.455 0.00 0.00 0.00 3.02 R
3618 3717 0.813184 CCAAATCAAGCAGGCGACAT 59.187 50.000 0.00 0.00 0.00 3.06 R
4517 4801 1.537202 GCACTGCCAGAGTAAACTTGG 59.463 52.381 0.00 6.86 31.73 3.61 R
4677 4961 1.669760 CAGCACGGCGGTTCCTTAA 60.670 57.895 13.24 0.00 0.00 1.85 R
5952 6249 0.102663 GGACCACTAAGCGCTCTACC 59.897 60.000 12.06 4.15 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.450282 ACCAAACAACCCCTAAGGC 57.550 52.632 0.00 0.00 40.58 4.35
19 20 0.857675 ACCAAACAACCCCTAAGGCT 59.142 50.000 0.00 0.00 40.58 4.58
20 21 1.219469 ACCAAACAACCCCTAAGGCTT 59.781 47.619 4.58 4.58 40.58 4.35
21 22 1.618343 CCAAACAACCCCTAAGGCTTG 59.382 52.381 10.69 0.00 40.58 4.01
22 23 2.316108 CAAACAACCCCTAAGGCTTGT 58.684 47.619 10.69 0.00 39.84 3.16
23 24 1.995376 AACAACCCCTAAGGCTTGTG 58.005 50.000 10.69 2.48 38.82 3.33
24 25 0.850784 ACAACCCCTAAGGCTTGTGT 59.149 50.000 10.69 1.73 38.01 3.72
25 26 1.216930 ACAACCCCTAAGGCTTGTGTT 59.783 47.619 10.69 4.98 38.01 3.32
26 27 2.316108 CAACCCCTAAGGCTTGTGTTT 58.684 47.619 10.69 0.00 40.58 2.83
27 28 1.995376 ACCCCTAAGGCTTGTGTTTG 58.005 50.000 10.69 0.00 40.58 2.93
28 29 1.216930 ACCCCTAAGGCTTGTGTTTGT 59.783 47.619 10.69 0.00 40.58 2.83
29 30 1.613437 CCCCTAAGGCTTGTGTTTGTG 59.387 52.381 10.69 0.00 0.00 3.33
30 31 1.000274 CCCTAAGGCTTGTGTTTGTGC 60.000 52.381 10.69 0.00 0.00 4.57
31 32 1.000274 CCTAAGGCTTGTGTTTGTGCC 60.000 52.381 10.69 0.00 45.21 5.01
35 36 2.422276 GGCTTGTGTTTGTGCCTAAG 57.578 50.000 0.00 0.00 41.92 2.18
36 37 1.681264 GGCTTGTGTTTGTGCCTAAGT 59.319 47.619 0.00 0.00 41.92 2.24
37 38 2.100749 GGCTTGTGTTTGTGCCTAAGTT 59.899 45.455 0.00 0.00 41.92 2.66
38 39 3.430236 GGCTTGTGTTTGTGCCTAAGTTT 60.430 43.478 0.00 0.00 41.92 2.66
39 40 3.551485 GCTTGTGTTTGTGCCTAAGTTTG 59.449 43.478 0.00 0.00 0.00 2.93
40 41 4.743493 CTTGTGTTTGTGCCTAAGTTTGT 58.257 39.130 0.00 0.00 0.00 2.83
41 42 4.792521 TGTGTTTGTGCCTAAGTTTGTT 57.207 36.364 0.00 0.00 0.00 2.83
42 43 4.739195 TGTGTTTGTGCCTAAGTTTGTTC 58.261 39.130 0.00 0.00 0.00 3.18
43 44 4.461081 TGTGTTTGTGCCTAAGTTTGTTCT 59.539 37.500 0.00 0.00 0.00 3.01
44 45 4.798387 GTGTTTGTGCCTAAGTTTGTTCTG 59.202 41.667 0.00 0.00 0.00 3.02
45 46 4.461081 TGTTTGTGCCTAAGTTTGTTCTGT 59.539 37.500 0.00 0.00 0.00 3.41
46 47 5.047660 TGTTTGTGCCTAAGTTTGTTCTGTT 60.048 36.000 0.00 0.00 0.00 3.16
47 48 4.630894 TGTGCCTAAGTTTGTTCTGTTG 57.369 40.909 0.00 0.00 0.00 3.33
48 49 3.181491 TGTGCCTAAGTTTGTTCTGTTGC 60.181 43.478 0.00 0.00 0.00 4.17
49 50 3.066760 GTGCCTAAGTTTGTTCTGTTGCT 59.933 43.478 0.00 0.00 0.00 3.91
50 51 3.315191 TGCCTAAGTTTGTTCTGTTGCTC 59.685 43.478 0.00 0.00 0.00 4.26
51 52 3.565902 GCCTAAGTTTGTTCTGTTGCTCT 59.434 43.478 0.00 0.00 0.00 4.09
52 53 4.755123 GCCTAAGTTTGTTCTGTTGCTCTA 59.245 41.667 0.00 0.00 0.00 2.43
53 54 5.106908 GCCTAAGTTTGTTCTGTTGCTCTAG 60.107 44.000 0.00 0.00 0.00 2.43
54 55 5.992217 CCTAAGTTTGTTCTGTTGCTCTAGT 59.008 40.000 0.00 0.00 0.00 2.57
55 56 6.483640 CCTAAGTTTGTTCTGTTGCTCTAGTT 59.516 38.462 0.00 0.00 0.00 2.24
56 57 6.759497 AAGTTTGTTCTGTTGCTCTAGTTT 57.241 33.333 0.00 0.00 0.00 2.66
57 58 7.859325 AAGTTTGTTCTGTTGCTCTAGTTTA 57.141 32.000 0.00 0.00 0.00 2.01
58 59 7.484035 AGTTTGTTCTGTTGCTCTAGTTTAG 57.516 36.000 0.00 0.00 0.00 1.85
59 60 7.048512 AGTTTGTTCTGTTGCTCTAGTTTAGT 58.951 34.615 0.00 0.00 0.00 2.24
60 61 7.553044 AGTTTGTTCTGTTGCTCTAGTTTAGTT 59.447 33.333 0.00 0.00 0.00 2.24
61 62 7.859325 TTGTTCTGTTGCTCTAGTTTAGTTT 57.141 32.000 0.00 0.00 0.00 2.66
62 63 7.859325 TGTTCTGTTGCTCTAGTTTAGTTTT 57.141 32.000 0.00 0.00 0.00 2.43
63 64 8.276252 TGTTCTGTTGCTCTAGTTTAGTTTTT 57.724 30.769 0.00 0.00 0.00 1.94
64 65 9.386010 TGTTCTGTTGCTCTAGTTTAGTTTTTA 57.614 29.630 0.00 0.00 0.00 1.52
65 66 9.865484 GTTCTGTTGCTCTAGTTTAGTTTTTAG 57.135 33.333 0.00 0.00 0.00 1.85
66 67 9.609346 TTCTGTTGCTCTAGTTTAGTTTTTAGT 57.391 29.630 0.00 0.00 0.00 2.24
67 68 9.609346 TCTGTTGCTCTAGTTTAGTTTTTAGTT 57.391 29.630 0.00 0.00 0.00 2.24
68 69 9.865484 CTGTTGCTCTAGTTTAGTTTTTAGTTC 57.135 33.333 0.00 0.00 0.00 3.01
69 70 9.386010 TGTTGCTCTAGTTTAGTTTTTAGTTCA 57.614 29.630 0.00 0.00 0.00 3.18
72 73 9.555727 TGCTCTAGTTTAGTTTTTAGTTCATGT 57.444 29.630 0.00 0.00 0.00 3.21
73 74 9.813080 GCTCTAGTTTAGTTTTTAGTTCATGTG 57.187 33.333 0.00 0.00 0.00 3.21
78 79 9.174166 AGTTTAGTTTTTAGTTCATGTGTGTCT 57.826 29.630 0.00 0.00 0.00 3.41
79 80 9.434559 GTTTAGTTTTTAGTTCATGTGTGTCTC 57.565 33.333 0.00 0.00 0.00 3.36
80 81 8.958119 TTAGTTTTTAGTTCATGTGTGTCTCT 57.042 30.769 0.00 0.00 0.00 3.10
81 82 7.251704 AGTTTTTAGTTCATGTGTGTCTCTG 57.748 36.000 0.00 0.00 0.00 3.35
82 83 6.260936 AGTTTTTAGTTCATGTGTGTCTCTGG 59.739 38.462 0.00 0.00 0.00 3.86
83 84 4.955811 TTAGTTCATGTGTGTCTCTGGT 57.044 40.909 0.00 0.00 0.00 4.00
84 85 6.413783 TTTAGTTCATGTGTGTCTCTGGTA 57.586 37.500 0.00 0.00 0.00 3.25
85 86 4.527509 AGTTCATGTGTGTCTCTGGTAG 57.472 45.455 0.00 0.00 0.00 3.18
86 87 2.996621 GTTCATGTGTGTCTCTGGTAGC 59.003 50.000 0.00 0.00 0.00 3.58
87 88 1.550524 TCATGTGTGTCTCTGGTAGCC 59.449 52.381 0.00 0.00 0.00 3.93
88 89 1.552337 CATGTGTGTCTCTGGTAGCCT 59.448 52.381 0.00 0.00 0.00 4.58
89 90 1.257743 TGTGTGTCTCTGGTAGCCTC 58.742 55.000 0.00 0.00 0.00 4.70
90 91 1.257743 GTGTGTCTCTGGTAGCCTCA 58.742 55.000 0.00 0.00 0.00 3.86
91 92 1.067495 GTGTGTCTCTGGTAGCCTCAC 60.067 57.143 0.00 0.00 0.00 3.51
92 93 0.533032 GTGTCTCTGGTAGCCTCACC 59.467 60.000 0.00 0.00 39.20 4.02
93 94 0.965866 TGTCTCTGGTAGCCTCACCG 60.966 60.000 0.00 0.00 41.88 4.94
94 95 2.052690 TCTCTGGTAGCCTCACCGC 61.053 63.158 0.00 0.00 41.88 5.68
95 96 2.283604 TCTGGTAGCCTCACCGCA 60.284 61.111 0.00 0.00 41.88 5.69
96 97 1.680522 CTCTGGTAGCCTCACCGCAT 61.681 60.000 0.00 0.00 41.88 4.73
97 98 1.227380 CTGGTAGCCTCACCGCATC 60.227 63.158 0.00 0.00 41.88 3.91
98 99 2.279517 GGTAGCCTCACCGCATCG 60.280 66.667 0.00 0.00 0.00 3.84
99 100 2.782222 GGTAGCCTCACCGCATCGA 61.782 63.158 0.00 0.00 0.00 3.59
100 101 1.299468 GTAGCCTCACCGCATCGAG 60.299 63.158 0.00 0.00 0.00 4.04
104 105 3.514417 CTCACCGCATCGAGGAGA 58.486 61.111 0.00 0.00 31.94 3.71
105 106 1.809869 CTCACCGCATCGAGGAGAA 59.190 57.895 0.00 0.00 31.94 2.87
106 107 0.248825 CTCACCGCATCGAGGAGAAG 60.249 60.000 0.00 0.00 31.94 2.85
107 108 1.227089 CACCGCATCGAGGAGAAGG 60.227 63.158 0.00 0.21 0.00 3.46
108 109 1.682684 ACCGCATCGAGGAGAAGGT 60.683 57.895 0.00 0.90 32.79 3.50
109 110 1.066587 CCGCATCGAGGAGAAGGTC 59.933 63.158 0.00 0.00 0.00 3.85
110 111 1.667154 CCGCATCGAGGAGAAGGTCA 61.667 60.000 0.00 0.00 0.00 4.02
111 112 0.526524 CGCATCGAGGAGAAGGTCAC 60.527 60.000 0.00 0.00 0.00 3.67
112 113 0.179097 GCATCGAGGAGAAGGTCACC 60.179 60.000 0.00 0.00 0.00 4.02
113 114 1.186200 CATCGAGGAGAAGGTCACCA 58.814 55.000 0.00 0.00 28.86 4.17
114 115 1.134965 CATCGAGGAGAAGGTCACCAC 60.135 57.143 0.00 0.00 28.86 4.16
115 116 0.178973 TCGAGGAGAAGGTCACCACA 60.179 55.000 0.00 0.00 28.86 4.17
116 117 0.038159 CGAGGAGAAGGTCACCACAC 60.038 60.000 0.00 0.00 28.86 3.82
117 118 1.048601 GAGGAGAAGGTCACCACACA 58.951 55.000 0.00 0.00 28.86 3.72
118 119 1.416401 GAGGAGAAGGTCACCACACAA 59.584 52.381 0.00 0.00 28.86 3.33
119 120 2.039084 GAGGAGAAGGTCACCACACAAT 59.961 50.000 0.00 0.00 28.86 2.71
120 121 2.443255 AGGAGAAGGTCACCACACAATT 59.557 45.455 0.00 0.00 28.86 2.32
121 122 2.554032 GGAGAAGGTCACCACACAATTG 59.446 50.000 3.24 3.24 0.00 2.32
122 123 3.214328 GAGAAGGTCACCACACAATTGT 58.786 45.455 4.92 4.92 35.84 2.71
123 124 3.631250 AGAAGGTCACCACACAATTGTT 58.369 40.909 8.77 0.00 31.66 2.83
124 125 3.632145 AGAAGGTCACCACACAATTGTTC 59.368 43.478 8.77 0.00 31.66 3.18
125 126 3.297134 AGGTCACCACACAATTGTTCT 57.703 42.857 8.77 0.00 31.66 3.01
126 127 2.951642 AGGTCACCACACAATTGTTCTG 59.048 45.455 8.77 7.17 31.66 3.02
127 128 2.034558 GGTCACCACACAATTGTTCTGG 59.965 50.000 22.69 22.69 31.66 3.86
128 129 2.948979 GTCACCACACAATTGTTCTGGA 59.051 45.455 27.96 13.33 31.66 3.86
129 130 3.569701 GTCACCACACAATTGTTCTGGAT 59.430 43.478 27.96 15.35 31.66 3.41
130 131 4.759693 GTCACCACACAATTGTTCTGGATA 59.240 41.667 27.96 17.03 31.66 2.59
131 132 5.415701 GTCACCACACAATTGTTCTGGATAT 59.584 40.000 27.96 11.43 31.66 1.63
132 133 6.597672 GTCACCACACAATTGTTCTGGATATA 59.402 38.462 27.96 13.55 31.66 0.86
133 134 7.120579 GTCACCACACAATTGTTCTGGATATAA 59.879 37.037 27.96 12.32 31.66 0.98
134 135 7.120579 TCACCACACAATTGTTCTGGATATAAC 59.879 37.037 27.96 0.00 31.66 1.89
135 136 6.377146 ACCACACAATTGTTCTGGATATAACC 59.623 38.462 27.96 0.00 31.66 2.85
136 137 6.376864 CCACACAATTGTTCTGGATATAACCA 59.623 38.462 20.87 1.29 34.35 3.67
137 138 7.093988 CCACACAATTGTTCTGGATATAACCAA 60.094 37.037 20.87 0.00 34.85 3.67
138 139 8.303156 CACACAATTGTTCTGGATATAACCAAA 58.697 33.333 8.77 0.00 34.85 3.28
139 140 8.303876 ACACAATTGTTCTGGATATAACCAAAC 58.696 33.333 8.77 10.40 33.90 2.93
140 141 8.303156 CACAATTGTTCTGGATATAACCAAACA 58.697 33.333 8.77 17.63 39.59 2.83
141 142 8.865090 ACAATTGTTCTGGATATAACCAAACAA 58.135 29.630 25.90 25.90 44.30 2.83
142 143 9.139174 CAATTGTTCTGGATATAACCAAACAAC 57.861 33.333 26.06 18.70 43.79 3.32
143 144 6.827586 TGTTCTGGATATAACCAAACAACC 57.172 37.500 18.51 0.00 39.59 3.77
144 145 5.413213 TGTTCTGGATATAACCAAACAACCG 59.587 40.000 18.51 2.99 39.59 4.44
145 146 4.519213 TCTGGATATAACCAAACAACCGG 58.481 43.478 0.00 0.00 39.59 5.28
146 147 4.225492 TCTGGATATAACCAAACAACCGGA 59.775 41.667 9.46 0.00 39.59 5.14
147 148 4.263435 TGGATATAACCAAACAACCGGAC 58.737 43.478 9.46 0.00 36.96 4.79
148 149 4.019141 TGGATATAACCAAACAACCGGACT 60.019 41.667 9.46 0.00 36.96 3.85
149 150 4.945543 GGATATAACCAAACAACCGGACTT 59.054 41.667 9.46 0.00 0.00 3.01
150 151 5.163693 GGATATAACCAAACAACCGGACTTG 60.164 44.000 9.46 5.71 0.00 3.16
151 152 1.842052 AACCAAACAACCGGACTTGT 58.158 45.000 9.46 6.53 35.83 3.16
152 153 1.099689 ACCAAACAACCGGACTTGTG 58.900 50.000 9.46 0.03 34.50 3.33
153 154 1.099689 CCAAACAACCGGACTTGTGT 58.900 50.000 9.46 0.51 34.50 3.72
154 155 1.474879 CCAAACAACCGGACTTGTGTT 59.525 47.619 9.46 7.42 34.50 3.32
155 156 2.094442 CCAAACAACCGGACTTGTGTTT 60.094 45.455 9.46 13.07 34.50 2.83
156 157 3.175929 CAAACAACCGGACTTGTGTTTC 58.824 45.455 9.46 0.00 34.50 2.78
157 158 1.385528 ACAACCGGACTTGTGTTTCC 58.614 50.000 9.46 0.00 32.95 3.13
158 159 1.064979 ACAACCGGACTTGTGTTTCCT 60.065 47.619 9.46 0.00 32.95 3.36
159 160 2.021457 CAACCGGACTTGTGTTTCCTT 58.979 47.619 9.46 0.00 0.00 3.36
160 161 2.425668 CAACCGGACTTGTGTTTCCTTT 59.574 45.455 9.46 0.00 0.00 3.11
161 162 2.294979 ACCGGACTTGTGTTTCCTTTC 58.705 47.619 9.46 0.00 0.00 2.62
162 163 2.294074 CCGGACTTGTGTTTCCTTTCA 58.706 47.619 0.00 0.00 0.00 2.69
163 164 2.685897 CCGGACTTGTGTTTCCTTTCAA 59.314 45.455 0.00 0.00 0.00 2.69
164 165 3.129638 CCGGACTTGTGTTTCCTTTCAAA 59.870 43.478 0.00 0.00 0.00 2.69
165 166 4.202111 CCGGACTTGTGTTTCCTTTCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
166 167 5.348164 CGGACTTGTGTTTCCTTTCAAATT 58.652 37.500 0.00 0.00 0.00 1.82
167 168 6.460399 CCGGACTTGTGTTTCCTTTCAAATTA 60.460 38.462 0.00 0.00 0.00 1.40
168 169 6.636850 CGGACTTGTGTTTCCTTTCAAATTAG 59.363 38.462 0.00 0.00 0.00 1.73
169 170 7.489160 GGACTTGTGTTTCCTTTCAAATTAGT 58.511 34.615 0.00 0.00 0.00 2.24
170 171 7.648112 GGACTTGTGTTTCCTTTCAAATTAGTC 59.352 37.037 0.00 0.00 0.00 2.59
171 172 7.489160 ACTTGTGTTTCCTTTCAAATTAGTCC 58.511 34.615 0.00 0.00 0.00 3.85
172 173 6.067263 TGTGTTTCCTTTCAAATTAGTCCG 57.933 37.500 0.00 0.00 0.00 4.79
173 174 4.915667 GTGTTTCCTTTCAAATTAGTCCGC 59.084 41.667 0.00 0.00 0.00 5.54
174 175 4.580995 TGTTTCCTTTCAAATTAGTCCGCA 59.419 37.500 0.00 0.00 0.00 5.69
175 176 5.067936 TGTTTCCTTTCAAATTAGTCCGCAA 59.932 36.000 0.00 0.00 0.00 4.85
176 177 4.759516 TCCTTTCAAATTAGTCCGCAAC 57.240 40.909 0.00 0.00 0.00 4.17
177 178 3.504520 TCCTTTCAAATTAGTCCGCAACC 59.495 43.478 0.00 0.00 0.00 3.77
178 179 3.254657 CCTTTCAAATTAGTCCGCAACCA 59.745 43.478 0.00 0.00 0.00 3.67
179 180 4.261825 CCTTTCAAATTAGTCCGCAACCAA 60.262 41.667 0.00 0.00 0.00 3.67
180 181 4.920640 TTCAAATTAGTCCGCAACCAAA 57.079 36.364 0.00 0.00 0.00 3.28
181 182 4.231718 TCAAATTAGTCCGCAACCAAAC 57.768 40.909 0.00 0.00 0.00 2.93
182 183 3.632604 TCAAATTAGTCCGCAACCAAACA 59.367 39.130 0.00 0.00 0.00 2.83
183 184 3.915437 AATTAGTCCGCAACCAAACAG 57.085 42.857 0.00 0.00 0.00 3.16
184 185 2.335316 TTAGTCCGCAACCAAACAGT 57.665 45.000 0.00 0.00 0.00 3.55
185 186 3.472283 TTAGTCCGCAACCAAACAGTA 57.528 42.857 0.00 0.00 0.00 2.74
186 187 2.561478 AGTCCGCAACCAAACAGTAT 57.439 45.000 0.00 0.00 0.00 2.12
187 188 2.151202 AGTCCGCAACCAAACAGTATG 58.849 47.619 0.00 0.00 46.00 2.39
188 189 0.878416 TCCGCAACCAAACAGTATGC 59.122 50.000 0.00 0.00 42.53 3.14
189 190 0.595588 CCGCAACCAAACAGTATGCA 59.404 50.000 0.00 0.00 42.53 3.96
190 191 1.202114 CCGCAACCAAACAGTATGCAT 59.798 47.619 3.79 3.79 42.53 3.96
191 192 2.352617 CCGCAACCAAACAGTATGCATT 60.353 45.455 3.54 0.00 42.53 3.56
192 193 2.916716 CGCAACCAAACAGTATGCATTC 59.083 45.455 3.54 0.00 42.53 2.67
193 194 3.253230 GCAACCAAACAGTATGCATTCC 58.747 45.455 3.54 0.00 42.53 3.01
194 195 3.500982 CAACCAAACAGTATGCATTCCG 58.499 45.455 3.54 0.00 42.53 4.30
195 196 2.790433 ACCAAACAGTATGCATTCCGT 58.210 42.857 3.54 0.00 42.53 4.69
196 197 3.153919 ACCAAACAGTATGCATTCCGTT 58.846 40.909 3.54 1.10 42.53 4.44
197 198 3.572255 ACCAAACAGTATGCATTCCGTTT 59.428 39.130 3.54 8.23 42.53 3.60
198 199 4.165779 CCAAACAGTATGCATTCCGTTTC 58.834 43.478 13.00 0.00 42.53 2.78
199 200 4.320861 CCAAACAGTATGCATTCCGTTTCA 60.321 41.667 13.00 0.00 42.53 2.69
200 201 4.685169 AACAGTATGCATTCCGTTTCAG 57.315 40.909 3.54 0.00 42.53 3.02
201 202 2.420022 ACAGTATGCATTCCGTTTCAGC 59.580 45.455 3.54 0.00 42.53 4.26
202 203 2.419673 CAGTATGCATTCCGTTTCAGCA 59.580 45.455 3.54 0.00 39.79 4.41
203 204 2.420022 AGTATGCATTCCGTTTCAGCAC 59.580 45.455 3.54 0.00 38.12 4.40
204 205 1.246649 ATGCATTCCGTTTCAGCACA 58.753 45.000 0.00 0.00 38.12 4.57
205 206 1.246649 TGCATTCCGTTTCAGCACAT 58.753 45.000 0.00 0.00 0.00 3.21
206 207 2.431454 TGCATTCCGTTTCAGCACATA 58.569 42.857 0.00 0.00 0.00 2.29
207 208 2.161410 TGCATTCCGTTTCAGCACATAC 59.839 45.455 0.00 0.00 0.00 2.39
208 209 2.161410 GCATTCCGTTTCAGCACATACA 59.839 45.455 0.00 0.00 0.00 2.29
209 210 3.728864 GCATTCCGTTTCAGCACATACAG 60.729 47.826 0.00 0.00 0.00 2.74
210 211 3.394674 TTCCGTTTCAGCACATACAGA 57.605 42.857 0.00 0.00 0.00 3.41
211 212 2.683968 TCCGTTTCAGCACATACAGAC 58.316 47.619 0.00 0.00 0.00 3.51
212 213 2.299013 TCCGTTTCAGCACATACAGACT 59.701 45.455 0.00 0.00 0.00 3.24
213 214 3.508402 TCCGTTTCAGCACATACAGACTA 59.492 43.478 0.00 0.00 0.00 2.59
214 215 3.859961 CCGTTTCAGCACATACAGACTAG 59.140 47.826 0.00 0.00 0.00 2.57
215 216 3.304559 CGTTTCAGCACATACAGACTAGC 59.695 47.826 0.00 0.00 0.00 3.42
216 217 4.245660 GTTTCAGCACATACAGACTAGCA 58.754 43.478 0.00 0.00 0.00 3.49
217 218 3.790152 TCAGCACATACAGACTAGCAG 57.210 47.619 0.00 0.00 0.00 4.24
218 219 3.356290 TCAGCACATACAGACTAGCAGA 58.644 45.455 0.00 0.00 0.00 4.26
219 220 3.956848 TCAGCACATACAGACTAGCAGAT 59.043 43.478 0.00 0.00 0.00 2.90
220 221 4.049869 CAGCACATACAGACTAGCAGATG 58.950 47.826 0.00 0.00 0.00 2.90
221 222 2.799412 GCACATACAGACTAGCAGATGC 59.201 50.000 0.00 0.00 42.49 3.91
233 234 1.918595 GCAGATGCTAGCTTTTTGCC 58.081 50.000 17.23 5.76 39.36 4.52
234 235 1.475682 GCAGATGCTAGCTTTTTGCCT 59.524 47.619 17.23 0.00 39.36 4.75
235 236 2.684881 GCAGATGCTAGCTTTTTGCCTA 59.315 45.455 17.23 0.00 39.36 3.93
236 237 3.488216 GCAGATGCTAGCTTTTTGCCTAC 60.488 47.826 17.23 0.00 39.36 3.18
237 238 3.691118 CAGATGCTAGCTTTTTGCCTACA 59.309 43.478 17.23 0.00 44.23 2.74
238 239 4.337555 CAGATGCTAGCTTTTTGCCTACAT 59.662 41.667 17.23 0.00 44.23 2.29
239 240 5.528690 CAGATGCTAGCTTTTTGCCTACATA 59.471 40.000 17.23 0.00 44.23 2.29
240 241 6.206243 CAGATGCTAGCTTTTTGCCTACATAT 59.794 38.462 17.23 0.00 44.23 1.78
241 242 5.756195 TGCTAGCTTTTTGCCTACATATG 57.244 39.130 17.23 0.00 44.23 1.78
242 243 4.036734 TGCTAGCTTTTTGCCTACATATGC 59.963 41.667 17.23 0.00 44.23 3.14
243 244 4.276926 GCTAGCTTTTTGCCTACATATGCT 59.723 41.667 7.70 0.00 44.23 3.79
244 245 4.907879 AGCTTTTTGCCTACATATGCTC 57.092 40.909 1.58 0.00 44.23 4.26
245 246 3.313526 AGCTTTTTGCCTACATATGCTCG 59.686 43.478 1.58 0.00 44.23 5.03
246 247 3.548818 GCTTTTTGCCTACATATGCTCGG 60.549 47.826 1.58 1.91 35.15 4.63
247 248 2.254546 TTTGCCTACATATGCTCGGG 57.745 50.000 1.58 1.30 0.00 5.14
248 249 0.250295 TTGCCTACATATGCTCGGGC 60.250 55.000 0.00 0.00 39.93 6.13
258 259 3.787001 GCTCGGGCAGGCCTAGTT 61.787 66.667 3.98 0.00 38.54 2.24
259 260 2.187946 CTCGGGCAGGCCTAGTTG 59.812 66.667 3.98 0.00 36.10 3.16
260 261 2.284331 TCGGGCAGGCCTAGTTGA 60.284 61.111 3.98 0.00 36.10 3.18
261 262 1.899437 CTCGGGCAGGCCTAGTTGAA 61.899 60.000 3.98 0.00 36.10 2.69
262 263 1.002624 CGGGCAGGCCTAGTTGAAA 60.003 57.895 3.98 0.00 36.10 2.69
263 264 0.394352 CGGGCAGGCCTAGTTGAAAT 60.394 55.000 3.98 0.00 36.10 2.17
264 265 1.134220 CGGGCAGGCCTAGTTGAAATA 60.134 52.381 3.98 0.00 36.10 1.40
265 266 2.682563 CGGGCAGGCCTAGTTGAAATAA 60.683 50.000 3.98 0.00 36.10 1.40
266 267 2.952310 GGGCAGGCCTAGTTGAAATAAG 59.048 50.000 3.98 0.00 36.10 1.73
267 268 3.621558 GGCAGGCCTAGTTGAAATAAGT 58.378 45.455 3.98 0.00 0.00 2.24
268 269 4.384868 GGGCAGGCCTAGTTGAAATAAGTA 60.385 45.833 3.98 0.00 36.10 2.24
269 270 5.377478 GGCAGGCCTAGTTGAAATAAGTAT 58.623 41.667 3.98 0.00 0.00 2.12
270 271 5.239525 GGCAGGCCTAGTTGAAATAAGTATG 59.760 44.000 3.98 0.00 0.00 2.39
271 272 5.278022 GCAGGCCTAGTTGAAATAAGTATGC 60.278 44.000 3.98 0.00 0.00 3.14
272 273 5.822519 CAGGCCTAGTTGAAATAAGTATGCA 59.177 40.000 3.98 0.00 0.00 3.96
273 274 6.318648 CAGGCCTAGTTGAAATAAGTATGCAA 59.681 38.462 3.98 0.00 0.00 4.08
274 275 6.889722 AGGCCTAGTTGAAATAAGTATGCAAA 59.110 34.615 1.29 0.00 0.00 3.68
275 276 7.396055 AGGCCTAGTTGAAATAAGTATGCAAAA 59.604 33.333 1.29 0.00 0.00 2.44
276 277 8.197439 GGCCTAGTTGAAATAAGTATGCAAAAT 58.803 33.333 0.00 0.00 0.00 1.82
277 278 9.023967 GCCTAGTTGAAATAAGTATGCAAAATG 57.976 33.333 0.00 0.00 0.00 2.32
278 279 9.023967 CCTAGTTGAAATAAGTATGCAAAATGC 57.976 33.333 0.00 0.00 45.29 3.56
279 280 7.832503 AGTTGAAATAAGTATGCAAAATGCC 57.167 32.000 0.00 0.00 44.23 4.40
280 281 7.614494 AGTTGAAATAAGTATGCAAAATGCCT 58.386 30.769 0.00 0.00 44.23 4.75
281 282 7.546667 AGTTGAAATAAGTATGCAAAATGCCTG 59.453 33.333 0.00 0.00 44.23 4.85
282 283 7.167924 TGAAATAAGTATGCAAAATGCCTGA 57.832 32.000 0.00 0.00 44.23 3.86
283 284 7.609960 TGAAATAAGTATGCAAAATGCCTGAA 58.390 30.769 0.00 0.00 44.23 3.02
284 285 8.093307 TGAAATAAGTATGCAAAATGCCTGAAA 58.907 29.630 0.00 0.00 44.23 2.69
285 286 8.845413 AAATAAGTATGCAAAATGCCTGAAAA 57.155 26.923 0.00 0.00 44.23 2.29
286 287 7.832503 ATAAGTATGCAAAATGCCTGAAAAC 57.167 32.000 0.00 0.00 44.23 2.43
287 288 4.236935 AGTATGCAAAATGCCTGAAAACG 58.763 39.130 0.00 0.00 44.23 3.60
288 289 2.879002 TGCAAAATGCCTGAAAACGA 57.121 40.000 0.00 0.00 44.23 3.85
289 290 3.383620 TGCAAAATGCCTGAAAACGAT 57.616 38.095 0.00 0.00 44.23 3.73
290 291 3.058450 TGCAAAATGCCTGAAAACGATG 58.942 40.909 0.00 0.00 44.23 3.84
291 292 2.159801 GCAAAATGCCTGAAAACGATGC 60.160 45.455 0.00 0.00 37.42 3.91
292 293 3.058450 CAAAATGCCTGAAAACGATGCA 58.942 40.909 0.00 0.00 36.23 3.96
293 294 2.642139 AATGCCTGAAAACGATGCAG 57.358 45.000 0.00 0.00 35.10 4.41
298 299 3.680642 CCTGAAAACGATGCAGGTATG 57.319 47.619 10.72 0.00 43.25 2.39
313 314 4.888326 AGGTATGCAAAATGCCTGAAAA 57.112 36.364 0.00 0.00 44.23 2.29
314 315 4.568956 AGGTATGCAAAATGCCTGAAAAC 58.431 39.130 0.00 0.00 44.23 2.43
315 316 3.367630 GGTATGCAAAATGCCTGAAAACG 59.632 43.478 0.00 0.00 44.23 3.60
316 317 2.879002 TGCAAAATGCCTGAAAACGA 57.121 40.000 0.00 0.00 44.23 3.85
317 318 3.383620 TGCAAAATGCCTGAAAACGAT 57.616 38.095 0.00 0.00 44.23 3.73
318 319 3.058450 TGCAAAATGCCTGAAAACGATG 58.942 40.909 0.00 0.00 44.23 3.84
319 320 2.159801 GCAAAATGCCTGAAAACGATGC 60.160 45.455 0.00 0.00 37.42 3.91
320 321 3.058450 CAAAATGCCTGAAAACGATGCA 58.942 40.909 0.00 0.00 36.23 3.96
321 322 2.642139 AATGCCTGAAAACGATGCAG 57.358 45.000 0.00 0.00 35.10 4.41
326 327 3.471495 CCTGAAAACGATGCAGGTAAC 57.529 47.619 10.72 0.00 43.25 2.50
327 328 2.811431 CCTGAAAACGATGCAGGTAACA 59.189 45.455 10.72 0.00 43.25 2.41
328 329 3.252215 CCTGAAAACGATGCAGGTAACAA 59.748 43.478 10.72 0.00 43.25 2.83
329 330 4.261405 CCTGAAAACGATGCAGGTAACAAA 60.261 41.667 10.72 0.00 43.25 2.83
330 331 5.446143 TGAAAACGATGCAGGTAACAAAT 57.554 34.783 0.00 0.00 41.41 2.32
331 332 5.218885 TGAAAACGATGCAGGTAACAAATG 58.781 37.500 0.00 0.00 41.41 2.32
332 333 2.919666 ACGATGCAGGTAACAAATGC 57.080 45.000 0.00 0.00 40.40 3.56
336 337 2.917701 TGCAGGTAACAAATGCATCG 57.082 45.000 0.00 0.00 44.56 3.84
337 338 2.431454 TGCAGGTAACAAATGCATCGA 58.569 42.857 0.00 0.00 44.56 3.59
338 339 2.816672 TGCAGGTAACAAATGCATCGAA 59.183 40.909 0.00 0.00 44.56 3.71
339 340 3.119884 TGCAGGTAACAAATGCATCGAAG 60.120 43.478 0.00 0.00 44.56 3.79
340 341 3.126858 GCAGGTAACAAATGCATCGAAGA 59.873 43.478 0.00 0.00 39.75 2.87
341 342 4.201950 GCAGGTAACAAATGCATCGAAGAT 60.202 41.667 0.00 0.00 40.64 2.40
342 343 5.505286 CAGGTAACAAATGCATCGAAGATC 58.495 41.667 0.00 0.00 40.64 2.75
343 344 4.271049 AGGTAACAAATGCATCGAAGATCG 59.729 41.667 0.00 0.00 40.64 3.69
344 345 2.744787 ACAAATGCATCGAAGATCGC 57.255 45.000 0.00 0.00 45.12 4.58
345 346 1.331756 ACAAATGCATCGAAGATCGCC 59.668 47.619 0.00 0.00 45.12 5.54
346 347 0.947244 AAATGCATCGAAGATCGCCC 59.053 50.000 0.00 0.00 45.12 6.13
347 348 0.886490 AATGCATCGAAGATCGCCCC 60.886 55.000 0.00 0.00 45.12 5.80
348 349 2.666526 GCATCGAAGATCGCCCCC 60.667 66.667 0.00 0.00 45.12 5.40
349 350 2.356313 CATCGAAGATCGCCCCCG 60.356 66.667 0.00 0.00 45.12 5.73
350 351 2.838225 ATCGAAGATCGCCCCCGT 60.838 61.111 0.00 0.00 45.12 5.28
351 352 2.857744 ATCGAAGATCGCCCCCGTC 61.858 63.158 0.00 0.00 45.12 4.79
352 353 3.528370 CGAAGATCGCCCCCGTCT 61.528 66.667 0.00 0.00 31.14 4.18
353 354 2.107141 GAAGATCGCCCCCGTCTG 59.893 66.667 0.00 0.00 35.54 3.51
354 355 4.162690 AAGATCGCCCCCGTCTGC 62.163 66.667 0.00 0.00 35.54 4.26
367 368 0.528684 CGTCTGCCCTAAGCTAGTGC 60.529 60.000 0.00 0.00 44.23 4.40
394 395 2.268920 GGGAGATCGCACTGGCAA 59.731 61.111 0.00 0.00 41.24 4.52
421 422 1.272480 TGCTGGAGTACTGGCAGAGTA 60.272 52.381 23.66 3.18 35.96 2.59
544 545 4.447342 CAGCCCCGGCCCATTTCT 62.447 66.667 1.02 0.00 43.17 2.52
593 616 2.904866 CCGCGGAGGAGAGAGAGG 60.905 72.222 24.07 0.00 45.00 3.69
594 617 2.904866 CGCGGAGGAGAGAGAGGG 60.905 72.222 0.00 0.00 0.00 4.30
954 977 3.610669 CGCCCCTCCTCATCCTCG 61.611 72.222 0.00 0.00 0.00 4.63
957 981 2.196925 CCCCTCCTCATCCTCGTCG 61.197 68.421 0.00 0.00 0.00 5.12
958 982 2.196925 CCCTCCTCATCCTCGTCGG 61.197 68.421 0.00 0.00 0.00 4.79
1065 1090 3.007323 GGGGGAGCCTGTACCGTT 61.007 66.667 0.00 0.00 0.00 4.44
1066 1091 2.582978 GGGGAGCCTGTACCGTTC 59.417 66.667 0.00 0.00 0.00 3.95
1304 1329 1.229723 TGGTAACCTCCCTCCCCAC 60.230 63.158 0.00 0.00 0.00 4.61
1314 1339 2.042762 CTCCCCACTCCCCATCCA 59.957 66.667 0.00 0.00 0.00 3.41
1315 1340 1.386485 CTCCCCACTCCCCATCCAT 60.386 63.158 0.00 0.00 0.00 3.41
1317 1342 2.464403 CCCCACTCCCCATCCATCC 61.464 68.421 0.00 0.00 0.00 3.51
1318 1343 1.386485 CCCACTCCCCATCCATCCT 60.386 63.158 0.00 0.00 0.00 3.24
1322 1347 0.647738 ACTCCCCATCCATCCTGGTA 59.352 55.000 0.00 0.00 39.03 3.25
1343 1368 1.523095 GTTTCTCATCATCCGCGCTAC 59.477 52.381 5.56 0.00 0.00 3.58
1501 1526 4.410400 GCTTGGGTCCGTGGGGAG 62.410 72.222 0.00 0.00 44.97 4.30
1505 1530 3.714001 GGGTCCGTGGGGAGTTCC 61.714 72.222 0.00 0.00 44.97 3.62
1541 1569 8.349568 ACGGAAATATGATCTGCTATGTACTA 57.650 34.615 0.00 0.00 0.00 1.82
1542 1570 8.803235 ACGGAAATATGATCTGCTATGTACTAA 58.197 33.333 0.00 0.00 0.00 2.24
1543 1571 9.809096 CGGAAATATGATCTGCTATGTACTAAT 57.191 33.333 0.00 0.00 0.00 1.73
1617 1645 0.398318 AGGTTGGAGACTTGGAGTGC 59.602 55.000 0.00 0.00 0.00 4.40
1620 1648 1.131638 TTGGAGACTTGGAGTGCTGT 58.868 50.000 0.00 0.00 0.00 4.40
1659 1688 4.041567 TGGAAACATGTGTCTATGGTCACT 59.958 41.667 15.66 0.00 33.65 3.41
1744 1773 7.122948 CCTCAGTACACTATACCTTCTGAACTT 59.877 40.741 0.00 0.00 31.63 2.66
1785 1814 1.902508 TCTGATCTTTCTGGCCGACTT 59.097 47.619 0.00 0.00 0.00 3.01
1872 1901 3.762823 AGTGACCTACTACTACCTTGTGC 59.237 47.826 0.00 0.00 38.04 4.57
1873 1902 3.508793 GTGACCTACTACTACCTTGTGCA 59.491 47.826 0.00 0.00 0.00 4.57
1874 1903 4.021719 GTGACCTACTACTACCTTGTGCAA 60.022 45.833 0.00 0.00 0.00 4.08
1875 1904 4.021719 TGACCTACTACTACCTTGTGCAAC 60.022 45.833 0.00 0.00 37.35 4.17
1903 1932 8.776376 ATAAAAATAAAAATCTGCCTGTGTGG 57.224 30.769 0.00 0.00 39.35 4.17
1966 1995 2.096069 TCTAACGACAACGGACTTCTCG 60.096 50.000 0.00 0.00 44.46 4.04
2033 2062 1.753930 TGTGTTCTGGCATGCATAGG 58.246 50.000 21.36 6.08 0.00 2.57
2058 2087 8.573885 GGAAGTAGCTTTAAACATTTACAAGGT 58.426 33.333 0.00 11.83 32.22 3.50
2075 2104 9.991906 TTTACAAGGTGGATAAGTATACATAGC 57.008 33.333 5.50 0.00 0.00 2.97
2216 2246 6.427853 GCATATATGTGCTATTCCACTGAACA 59.572 38.462 16.44 0.00 41.82 3.18
2279 2309 0.106918 TCAAAAACAGGGGAGTGCGT 60.107 50.000 0.00 0.00 0.00 5.24
2595 2626 4.474651 AGGGACAGAAATATCACATCCACA 59.525 41.667 0.00 0.00 0.00 4.17
2596 2627 5.044919 AGGGACAGAAATATCACATCCACAA 60.045 40.000 0.00 0.00 0.00 3.33
2597 2628 5.829924 GGGACAGAAATATCACATCCACAAT 59.170 40.000 0.00 0.00 0.00 2.71
2598 2629 6.322201 GGGACAGAAATATCACATCCACAATT 59.678 38.462 0.00 0.00 0.00 2.32
2599 2630 7.420800 GGACAGAAATATCACATCCACAATTC 58.579 38.462 0.00 0.00 0.00 2.17
2600 2631 7.338800 ACAGAAATATCACATCCACAATTCC 57.661 36.000 0.00 0.00 0.00 3.01
2601 2632 6.891361 ACAGAAATATCACATCCACAATTCCA 59.109 34.615 0.00 0.00 0.00 3.53
2602 2633 7.148018 ACAGAAATATCACATCCACAATTCCAC 60.148 37.037 0.00 0.00 0.00 4.02
2616 2647 6.349611 CCACAATTCCACATGTCCTTTTCTAG 60.350 42.308 0.00 0.00 0.00 2.43
2631 2662 8.031277 GTCCTTTTCTAGTTATCCTCAACGTAA 58.969 37.037 0.00 0.00 33.50 3.18
2727 2758 8.043710 CAGAGTAAAACAGAGATCCCTTATGTT 58.956 37.037 0.00 0.00 35.47 2.71
2820 2851 0.539986 TTCCACTAGAATGGGTCGGC 59.460 55.000 0.00 0.00 40.49 5.54
2821 2852 1.146263 CCACTAGAATGGGTCGGCC 59.854 63.158 0.00 0.00 35.95 6.13
2822 2853 1.338136 CCACTAGAATGGGTCGGCCT 61.338 60.000 5.77 0.00 35.95 5.19
3033 3097 1.611977 TGTACTTGACGCTGCAGTACT 59.388 47.619 21.27 0.00 37.02 2.73
3046 3110 2.224281 TGCAGTACTGAAGAACACCCAG 60.224 50.000 27.08 0.00 0.00 4.45
3053 3117 2.618709 CTGAAGAACACCCAGGAAACAC 59.381 50.000 0.00 0.00 0.00 3.32
3054 3118 2.025793 TGAAGAACACCCAGGAAACACA 60.026 45.455 0.00 0.00 0.00 3.72
3055 3119 2.348411 AGAACACCCAGGAAACACAG 57.652 50.000 0.00 0.00 0.00 3.66
3056 3120 1.843851 AGAACACCCAGGAAACACAGA 59.156 47.619 0.00 0.00 0.00 3.41
3057 3121 2.241176 AGAACACCCAGGAAACACAGAA 59.759 45.455 0.00 0.00 0.00 3.02
3058 3122 3.117512 AGAACACCCAGGAAACACAGAAT 60.118 43.478 0.00 0.00 0.00 2.40
3059 3123 2.586425 ACACCCAGGAAACACAGAATG 58.414 47.619 0.00 0.00 46.00 2.67
3082 3153 5.640783 TGCTGAATACAGAAGAACAGATGTG 59.359 40.000 0.00 0.00 46.03 3.21
3352 3442 4.643387 GGTGGGACGGCAAGCAGT 62.643 66.667 0.00 0.00 0.00 4.40
3610 3709 1.796355 CGAGCGAAAGTCGAGCGAA 60.796 57.895 1.05 0.00 43.74 4.70
3612 3711 0.729816 GAGCGAAAGTCGAGCGAACT 60.730 55.000 1.05 0.00 43.74 3.01
3618 3717 0.387929 AAGTCGAGCGAACTGTTCCA 59.612 50.000 14.48 0.00 0.00 3.53
3624 3723 1.132640 GCGAACTGTTCCATGTCGC 59.867 57.895 14.48 10.38 37.93 5.19
3626 3725 0.670546 CGAACTGTTCCATGTCGCCT 60.671 55.000 14.48 0.00 0.00 5.52
3662 3761 1.140252 ACCGCCTAGTTCCGCATAAAT 59.860 47.619 0.00 0.00 0.00 1.40
3736 3838 1.229951 ACTGGAATGGGCTCTGGGA 60.230 57.895 0.00 0.00 0.00 4.37
3749 3851 2.524887 TGGGAACGGAACCGACCT 60.525 61.111 20.14 3.80 42.83 3.85
3756 3858 3.442100 GAACGGAACCGACCTATTACAG 58.558 50.000 20.14 0.00 42.83 2.74
3812 3914 6.843069 AATTGAGTTGTAGCGCAAAATTTT 57.157 29.167 11.47 0.00 39.03 1.82
3926 4031 1.227943 TGTGTGCTTCTGGGACTGC 60.228 57.895 0.00 0.00 37.18 4.40
3927 4032 1.968540 GTGTGCTTCTGGGACTGCC 60.969 63.158 0.00 0.00 37.18 4.85
3980 4085 7.418025 CCCTTCCGATCTCATATATAGAAACCC 60.418 44.444 0.00 0.00 0.00 4.11
4015 4120 3.886123 ACAAACTACTCTTGTGGCACTT 58.114 40.909 19.83 0.00 35.70 3.16
4407 4691 2.119495 GTGAGATAGACATGGGTGGGT 58.881 52.381 0.00 0.00 0.00 4.51
4435 4719 0.598065 GTTGGCCCAGTTTACAGCAG 59.402 55.000 0.00 0.00 0.00 4.24
4472 4756 7.592938 TGTGTTCATGCTTTGGAGTTATAAAG 58.407 34.615 0.00 0.00 37.06 1.85
4477 4761 6.951198 TCATGCTTTGGAGTTATAAAGGGAAA 59.049 34.615 0.00 0.00 35.10 3.13
4517 4801 3.715628 TTTGCTTGTTTCTTCTGCTCC 57.284 42.857 0.00 0.00 0.00 4.70
4691 4975 0.946528 GTTGTTTAAGGAACCGCCGT 59.053 50.000 0.00 0.00 43.43 5.68
4796 5080 7.768120 ACTTGGTCAATCTTCTGTATCATCTTC 59.232 37.037 0.00 0.00 0.00 2.87
4887 5173 4.142687 CCGTGTGAACTTTTCCATGTATCC 60.143 45.833 0.00 0.00 0.00 2.59
4933 5222 8.477984 TCATTCTTTTTAACAATATTGGCTGC 57.522 30.769 19.37 0.00 0.00 5.25
4975 5264 8.097038 AGAAATCTTGCAGTGAGATAAAGTACA 58.903 33.333 0.00 0.00 33.63 2.90
4989 5278 7.148641 AGATAAAGTACATGCTCAGATTACGG 58.851 38.462 0.00 0.00 0.00 4.02
5009 5298 3.305094 CGGCAATTGAATGAAACTGCATC 59.695 43.478 10.34 0.00 0.00 3.91
5053 5342 9.740239 CATGTTAGTTTCATCCTGGAAATTATG 57.260 33.333 0.00 0.00 38.86 1.90
5091 5380 7.956328 TTGACTGTGTGAGGTCTAATATAGT 57.044 36.000 0.00 0.00 34.01 2.12
5098 5388 8.797438 TGTGTGAGGTCTAATATAGTGATCATC 58.203 37.037 0.00 0.00 0.00 2.92
5362 5653 1.525941 GCCCAAGTTACGGTTTAGCA 58.474 50.000 0.00 0.00 0.00 3.49
5599 5892 4.219115 TGGTTGAGTTTTGCCCTGAATTA 58.781 39.130 0.00 0.00 0.00 1.40
5602 5895 5.185828 GGTTGAGTTTTGCCCTGAATTATCT 59.814 40.000 0.00 0.00 0.00 1.98
5606 5899 6.267471 TGAGTTTTGCCCTGAATTATCTTGTT 59.733 34.615 0.00 0.00 0.00 2.83
5630 5923 2.690497 GTGCATACAGAGAGCCTAGACA 59.310 50.000 0.00 0.00 0.00 3.41
5634 5927 4.795635 GCATACAGAGAGCCTAGACATGTG 60.796 50.000 1.15 0.00 0.00 3.21
5635 5928 2.813907 ACAGAGAGCCTAGACATGTGT 58.186 47.619 1.15 0.22 0.00 3.72
5638 5931 2.093764 AGAGAGCCTAGACATGTGTTGC 60.094 50.000 1.15 6.06 0.00 4.17
5639 5932 1.065854 AGAGCCTAGACATGTGTTGCC 60.066 52.381 1.15 0.00 0.00 4.52
5641 5934 2.168521 GAGCCTAGACATGTGTTGCCTA 59.831 50.000 1.15 0.00 0.00 3.93
5642 5935 2.093447 AGCCTAGACATGTGTTGCCTAC 60.093 50.000 1.15 0.00 0.00 3.18
5643 5936 2.093447 GCCTAGACATGTGTTGCCTACT 60.093 50.000 1.15 0.00 0.00 2.57
5644 5937 3.525537 CCTAGACATGTGTTGCCTACTG 58.474 50.000 1.15 0.00 0.00 2.74
5669 5965 0.882042 CATGATGAGTAGGGGCGCAC 60.882 60.000 10.83 4.83 0.00 5.34
5673 5969 1.961180 ATGAGTAGGGGCGCACTGTC 61.961 60.000 10.74 8.86 0.00 3.51
5731 6027 1.666189 GATCTCCTTTCCTTTTCGCCG 59.334 52.381 0.00 0.00 0.00 6.46
5738 6034 1.791103 TTCCTTTTCGCCGCTTGGTG 61.791 55.000 0.00 0.00 45.02 4.17
5763 6059 0.036010 CAAGGATTGTCTCGTGCCCT 60.036 55.000 0.00 0.00 42.34 5.19
5829 6125 2.281070 CTGCCGTGCTGGTTGTCT 60.281 61.111 0.00 0.00 41.21 3.41
5945 6242 6.446254 GATGCTTCCATCTTCCAACGTTGG 62.446 50.000 36.52 36.52 45.15 3.77
5962 6259 1.191535 TGGTGTAATGGTAGAGCGCT 58.808 50.000 11.27 11.27 0.00 5.92
5963 6260 1.553248 TGGTGTAATGGTAGAGCGCTT 59.447 47.619 13.26 4.13 0.00 4.68
5968 6265 2.604046 AATGGTAGAGCGCTTAGTGG 57.396 50.000 13.26 0.00 0.00 4.00
6061 6362 4.324974 CAAAAATTTGCTACAATGGCCG 57.675 40.909 0.00 0.00 0.00 6.13
6140 6441 2.099921 AGTGCTACGTCCATGCTAAGAG 59.900 50.000 0.00 0.00 0.00 2.85
6175 6476 7.907389 TCTTCAAGTGACCATTAGATTACACT 58.093 34.615 0.00 0.00 39.70 3.55
6235 6536 3.119096 GGCTTCGTGCGGACCTTC 61.119 66.667 0.00 0.00 44.05 3.46
6442 6743 0.179065 TCAGGCGCATCTTCATCTGG 60.179 55.000 10.83 0.00 0.00 3.86
6444 6745 0.106335 AGGCGCATCTTCATCTGGAG 59.894 55.000 10.83 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.857675 AGCCTTAGGGGTTGTTTGGT 59.142 50.000 0.00 0.00 40.98 3.67
1 2 3.765968 AGCCTTAGGGGTTGTTTGG 57.234 52.632 0.00 0.00 40.98 3.28
8 9 1.216930 ACAAACACAAGCCTTAGGGGT 59.783 47.619 0.00 0.00 46.45 4.95
9 10 1.613437 CACAAACACAAGCCTTAGGGG 59.387 52.381 0.00 0.00 38.36 4.79
10 11 1.000274 GCACAAACACAAGCCTTAGGG 60.000 52.381 0.00 0.00 0.00 3.53
11 12 1.000274 GGCACAAACACAAGCCTTAGG 60.000 52.381 0.00 0.00 43.70 2.69
12 13 2.422276 GGCACAAACACAAGCCTTAG 57.578 50.000 0.00 0.00 43.70 2.18
17 18 3.436700 AACTTAGGCACAAACACAAGC 57.563 42.857 0.00 0.00 0.00 4.01
18 19 4.743493 ACAAACTTAGGCACAAACACAAG 58.257 39.130 0.00 0.00 0.00 3.16
19 20 4.792521 ACAAACTTAGGCACAAACACAA 57.207 36.364 0.00 0.00 0.00 3.33
20 21 4.461081 AGAACAAACTTAGGCACAAACACA 59.539 37.500 0.00 0.00 0.00 3.72
21 22 4.798387 CAGAACAAACTTAGGCACAAACAC 59.202 41.667 0.00 0.00 0.00 3.32
22 23 4.461081 ACAGAACAAACTTAGGCACAAACA 59.539 37.500 0.00 0.00 0.00 2.83
23 24 4.993905 ACAGAACAAACTTAGGCACAAAC 58.006 39.130 0.00 0.00 0.00 2.93
24 25 5.406649 CAACAGAACAAACTTAGGCACAAA 58.593 37.500 0.00 0.00 0.00 2.83
25 26 4.676723 GCAACAGAACAAACTTAGGCACAA 60.677 41.667 0.00 0.00 0.00 3.33
26 27 3.181491 GCAACAGAACAAACTTAGGCACA 60.181 43.478 0.00 0.00 0.00 4.57
27 28 3.066760 AGCAACAGAACAAACTTAGGCAC 59.933 43.478 0.00 0.00 0.00 5.01
28 29 3.287222 AGCAACAGAACAAACTTAGGCA 58.713 40.909 0.00 0.00 0.00 4.75
29 30 3.565902 AGAGCAACAGAACAAACTTAGGC 59.434 43.478 0.00 0.00 0.00 3.93
30 31 5.992217 ACTAGAGCAACAGAACAAACTTAGG 59.008 40.000 0.00 0.00 0.00 2.69
31 32 7.484035 AACTAGAGCAACAGAACAAACTTAG 57.516 36.000 0.00 0.00 0.00 2.18
32 33 7.859325 AAACTAGAGCAACAGAACAAACTTA 57.141 32.000 0.00 0.00 0.00 2.24
33 34 6.759497 AAACTAGAGCAACAGAACAAACTT 57.241 33.333 0.00 0.00 0.00 2.66
34 35 7.048512 ACTAAACTAGAGCAACAGAACAAACT 58.951 34.615 0.00 0.00 0.00 2.66
35 36 7.247929 ACTAAACTAGAGCAACAGAACAAAC 57.752 36.000 0.00 0.00 0.00 2.93
36 37 7.859325 AACTAAACTAGAGCAACAGAACAAA 57.141 32.000 0.00 0.00 0.00 2.83
37 38 7.859325 AAACTAAACTAGAGCAACAGAACAA 57.141 32.000 0.00 0.00 0.00 2.83
38 39 7.859325 AAAACTAAACTAGAGCAACAGAACA 57.141 32.000 0.00 0.00 0.00 3.18
39 40 9.865484 CTAAAAACTAAACTAGAGCAACAGAAC 57.135 33.333 0.00 0.00 0.00 3.01
40 41 9.609346 ACTAAAAACTAAACTAGAGCAACAGAA 57.391 29.630 0.00 0.00 0.00 3.02
41 42 9.609346 AACTAAAAACTAAACTAGAGCAACAGA 57.391 29.630 0.00 0.00 0.00 3.41
42 43 9.865484 GAACTAAAAACTAAACTAGAGCAACAG 57.135 33.333 0.00 0.00 0.00 3.16
43 44 9.386010 TGAACTAAAAACTAAACTAGAGCAACA 57.614 29.630 0.00 0.00 0.00 3.33
46 47 9.555727 ACATGAACTAAAAACTAAACTAGAGCA 57.444 29.630 0.00 0.00 0.00 4.26
47 48 9.813080 CACATGAACTAAAAACTAAACTAGAGC 57.187 33.333 0.00 0.00 0.00 4.09
52 53 9.174166 AGACACACATGAACTAAAAACTAAACT 57.826 29.630 0.00 0.00 0.00 2.66
53 54 9.434559 GAGACACACATGAACTAAAAACTAAAC 57.565 33.333 0.00 0.00 0.00 2.01
54 55 9.391006 AGAGACACACATGAACTAAAAACTAAA 57.609 29.630 0.00 0.00 0.00 1.85
55 56 8.826710 CAGAGACACACATGAACTAAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
56 57 7.441157 CCAGAGACACACATGAACTAAAAACTA 59.559 37.037 0.00 0.00 0.00 2.24
57 58 6.260936 CCAGAGACACACATGAACTAAAAACT 59.739 38.462 0.00 0.00 0.00 2.66
58 59 6.038271 ACCAGAGACACACATGAACTAAAAAC 59.962 38.462 0.00 0.00 0.00 2.43
59 60 6.119536 ACCAGAGACACACATGAACTAAAAA 58.880 36.000 0.00 0.00 0.00 1.94
60 61 5.680619 ACCAGAGACACACATGAACTAAAA 58.319 37.500 0.00 0.00 0.00 1.52
61 62 5.290493 ACCAGAGACACACATGAACTAAA 57.710 39.130 0.00 0.00 0.00 1.85
62 63 4.955811 ACCAGAGACACACATGAACTAA 57.044 40.909 0.00 0.00 0.00 2.24
63 64 4.082190 GCTACCAGAGACACACATGAACTA 60.082 45.833 0.00 0.00 0.00 2.24
64 65 3.306364 GCTACCAGAGACACACATGAACT 60.306 47.826 0.00 0.00 0.00 3.01
65 66 2.996621 GCTACCAGAGACACACATGAAC 59.003 50.000 0.00 0.00 0.00 3.18
66 67 2.028112 GGCTACCAGAGACACACATGAA 60.028 50.000 0.00 0.00 30.86 2.57
67 68 1.550524 GGCTACCAGAGACACACATGA 59.449 52.381 0.00 0.00 30.86 3.07
68 69 1.552337 AGGCTACCAGAGACACACATG 59.448 52.381 0.00 0.00 34.40 3.21
69 70 1.827969 GAGGCTACCAGAGACACACAT 59.172 52.381 0.00 0.00 34.40 3.21
70 71 1.257743 GAGGCTACCAGAGACACACA 58.742 55.000 0.00 0.00 34.40 3.72
71 72 1.067495 GTGAGGCTACCAGAGACACAC 60.067 57.143 0.00 0.00 45.92 3.82
72 73 1.257743 GTGAGGCTACCAGAGACACA 58.742 55.000 0.00 0.00 34.40 3.72
73 74 0.533032 GGTGAGGCTACCAGAGACAC 59.467 60.000 7.89 0.00 40.54 3.67
74 75 0.965866 CGGTGAGGCTACCAGAGACA 60.966 60.000 11.85 0.00 40.89 3.41
75 76 1.810532 CGGTGAGGCTACCAGAGAC 59.189 63.158 11.85 0.00 40.89 3.36
76 77 2.052690 GCGGTGAGGCTACCAGAGA 61.053 63.158 11.85 0.00 40.89 3.10
77 78 1.680522 ATGCGGTGAGGCTACCAGAG 61.681 60.000 11.85 0.45 40.89 3.35
78 79 1.676678 GATGCGGTGAGGCTACCAGA 61.677 60.000 11.85 0.90 40.89 3.86
79 80 1.227380 GATGCGGTGAGGCTACCAG 60.227 63.158 11.85 7.06 40.89 4.00
80 81 2.900273 GATGCGGTGAGGCTACCA 59.100 61.111 11.85 0.00 40.89 3.25
81 82 2.279517 CGATGCGGTGAGGCTACC 60.280 66.667 0.00 0.00 37.37 3.18
82 83 1.299468 CTCGATGCGGTGAGGCTAC 60.299 63.158 0.00 0.00 0.00 3.58
83 84 2.490148 CCTCGATGCGGTGAGGCTA 61.490 63.158 5.16 0.00 44.83 3.93
84 85 3.842923 CCTCGATGCGGTGAGGCT 61.843 66.667 5.16 0.00 44.83 4.58
87 88 0.248825 CTTCTCCTCGATGCGGTGAG 60.249 60.000 0.00 0.00 0.00 3.51
88 89 1.667154 CCTTCTCCTCGATGCGGTGA 61.667 60.000 0.00 0.00 0.00 4.02
89 90 1.227089 CCTTCTCCTCGATGCGGTG 60.227 63.158 0.00 0.00 0.00 4.94
90 91 1.668101 GACCTTCTCCTCGATGCGGT 61.668 60.000 0.00 0.00 0.00 5.68
91 92 1.066587 GACCTTCTCCTCGATGCGG 59.933 63.158 0.00 0.00 0.00 5.69
92 93 0.526524 GTGACCTTCTCCTCGATGCG 60.527 60.000 0.00 0.00 0.00 4.73
93 94 0.179097 GGTGACCTTCTCCTCGATGC 60.179 60.000 0.00 0.00 0.00 3.91
94 95 1.134965 GTGGTGACCTTCTCCTCGATG 60.135 57.143 2.11 0.00 31.62 3.84
95 96 1.187087 GTGGTGACCTTCTCCTCGAT 58.813 55.000 2.11 0.00 31.62 3.59
96 97 0.178973 TGTGGTGACCTTCTCCTCGA 60.179 55.000 2.11 0.00 31.62 4.04
97 98 0.038159 GTGTGGTGACCTTCTCCTCG 60.038 60.000 2.11 0.00 31.62 4.63
98 99 1.048601 TGTGTGGTGACCTTCTCCTC 58.951 55.000 2.11 0.00 31.62 3.71
99 100 1.507140 TTGTGTGGTGACCTTCTCCT 58.493 50.000 2.11 0.00 31.62 3.69
100 101 2.554032 CAATTGTGTGGTGACCTTCTCC 59.446 50.000 2.11 0.00 0.00 3.71
101 102 3.214328 ACAATTGTGTGGTGACCTTCTC 58.786 45.455 11.07 0.00 36.31 2.87
102 103 3.297134 ACAATTGTGTGGTGACCTTCT 57.703 42.857 11.07 0.00 36.31 2.85
103 104 3.632145 AGAACAATTGTGTGGTGACCTTC 59.368 43.478 12.82 1.62 38.27 3.46
104 105 3.381272 CAGAACAATTGTGTGGTGACCTT 59.619 43.478 12.82 0.00 38.27 3.50
105 106 2.951642 CAGAACAATTGTGTGGTGACCT 59.048 45.455 12.82 0.00 38.27 3.85
106 107 2.034558 CCAGAACAATTGTGTGGTGACC 59.965 50.000 23.53 0.00 38.27 4.02
107 108 2.948979 TCCAGAACAATTGTGTGGTGAC 59.051 45.455 27.59 10.37 38.27 3.67
108 109 3.289407 TCCAGAACAATTGTGTGGTGA 57.711 42.857 27.59 14.87 38.27 4.02
109 110 5.902613 ATATCCAGAACAATTGTGTGGTG 57.097 39.130 27.59 16.61 38.27 4.17
110 111 6.377146 GGTTATATCCAGAACAATTGTGTGGT 59.623 38.462 27.59 20.54 38.27 4.16
111 112 6.376864 TGGTTATATCCAGAACAATTGTGTGG 59.623 38.462 24.97 24.97 33.91 4.17
112 113 7.389803 TGGTTATATCCAGAACAATTGTGTG 57.610 36.000 12.82 12.53 33.91 3.82
113 114 8.303876 GTTTGGTTATATCCAGAACAATTGTGT 58.696 33.333 12.82 2.32 38.00 3.72
114 115 8.303156 TGTTTGGTTATATCCAGAACAATTGTG 58.697 33.333 12.82 0.00 38.80 3.33
115 116 8.415950 TGTTTGGTTATATCCAGAACAATTGT 57.584 30.769 18.33 4.92 38.80 2.71
116 117 9.139174 GTTGTTTGGTTATATCCAGAACAATTG 57.861 33.333 25.67 3.24 42.53 2.32
117 118 8.311109 GGTTGTTTGGTTATATCCAGAACAATT 58.689 33.333 25.67 0.00 42.53 2.32
118 119 7.362574 CGGTTGTTTGGTTATATCCAGAACAAT 60.363 37.037 25.67 0.00 42.53 2.71
119 120 6.072397 CGGTTGTTTGGTTATATCCAGAACAA 60.072 38.462 22.76 22.76 40.90 2.83
120 121 5.413213 CGGTTGTTTGGTTATATCCAGAACA 59.587 40.000 17.50 17.50 38.80 3.18
121 122 5.163693 CCGGTTGTTTGGTTATATCCAGAAC 60.164 44.000 14.56 14.56 38.80 3.01
122 123 4.944930 CCGGTTGTTTGGTTATATCCAGAA 59.055 41.667 2.82 0.00 38.80 3.02
123 124 4.225492 TCCGGTTGTTTGGTTATATCCAGA 59.775 41.667 0.00 0.00 38.80 3.86
124 125 4.334481 GTCCGGTTGTTTGGTTATATCCAG 59.666 45.833 0.00 0.00 38.80 3.86
125 126 4.019141 AGTCCGGTTGTTTGGTTATATCCA 60.019 41.667 0.00 0.00 35.49 3.41
126 127 4.520179 AGTCCGGTTGTTTGGTTATATCC 58.480 43.478 0.00 0.00 0.00 2.59
127 128 5.413523 ACAAGTCCGGTTGTTTGGTTATATC 59.586 40.000 0.00 0.00 37.36 1.63
128 129 5.182380 CACAAGTCCGGTTGTTTGGTTATAT 59.818 40.000 7.67 0.00 38.65 0.86
129 130 4.515944 CACAAGTCCGGTTGTTTGGTTATA 59.484 41.667 7.67 0.00 38.65 0.98
130 131 3.316868 CACAAGTCCGGTTGTTTGGTTAT 59.683 43.478 7.67 0.00 38.65 1.89
131 132 2.683867 CACAAGTCCGGTTGTTTGGTTA 59.316 45.455 7.67 0.00 38.65 2.85
132 133 1.474879 CACAAGTCCGGTTGTTTGGTT 59.525 47.619 7.67 0.00 38.65 3.67
133 134 1.099689 CACAAGTCCGGTTGTTTGGT 58.900 50.000 7.67 0.00 38.65 3.67
134 135 1.099689 ACACAAGTCCGGTTGTTTGG 58.900 50.000 7.67 0.81 38.65 3.28
135 136 2.931512 AACACAAGTCCGGTTGTTTG 57.068 45.000 7.67 7.81 38.65 2.93
136 137 2.164827 GGAAACACAAGTCCGGTTGTTT 59.835 45.455 7.67 12.43 38.65 2.83
137 138 1.746787 GGAAACACAAGTCCGGTTGTT 59.253 47.619 7.67 5.28 38.65 2.83
138 139 1.064979 AGGAAACACAAGTCCGGTTGT 60.065 47.619 0.00 2.34 41.47 3.32
139 140 1.675552 AGGAAACACAAGTCCGGTTG 58.324 50.000 0.00 1.56 39.06 3.77
140 141 2.430248 AAGGAAACACAAGTCCGGTT 57.570 45.000 0.00 0.00 39.06 4.44
141 142 2.294979 GAAAGGAAACACAAGTCCGGT 58.705 47.619 0.00 0.00 39.06 5.28
142 143 2.294074 TGAAAGGAAACACAAGTCCGG 58.706 47.619 0.00 0.00 39.06 5.14
143 144 4.364415 TTTGAAAGGAAACACAAGTCCG 57.636 40.909 0.00 0.00 39.06 4.79
144 145 7.489160 ACTAATTTGAAAGGAAACACAAGTCC 58.511 34.615 0.00 0.00 0.00 3.85
145 146 7.648112 GGACTAATTTGAAAGGAAACACAAGTC 59.352 37.037 0.00 0.00 0.00 3.01
146 147 7.489160 GGACTAATTTGAAAGGAAACACAAGT 58.511 34.615 0.00 0.00 0.00 3.16
147 148 6.636850 CGGACTAATTTGAAAGGAAACACAAG 59.363 38.462 0.00 0.00 0.00 3.16
148 149 6.500041 CGGACTAATTTGAAAGGAAACACAA 58.500 36.000 0.00 0.00 0.00 3.33
149 150 5.506649 GCGGACTAATTTGAAAGGAAACACA 60.507 40.000 0.00 0.00 0.00 3.72
150 151 4.915667 GCGGACTAATTTGAAAGGAAACAC 59.084 41.667 0.00 0.00 0.00 3.32
151 152 4.580995 TGCGGACTAATTTGAAAGGAAACA 59.419 37.500 0.00 0.00 0.00 2.83
152 153 5.116069 TGCGGACTAATTTGAAAGGAAAC 57.884 39.130 0.00 0.00 0.00 2.78
153 154 5.508320 GGTTGCGGACTAATTTGAAAGGAAA 60.508 40.000 0.00 0.00 0.00 3.13
154 155 4.022676 GGTTGCGGACTAATTTGAAAGGAA 60.023 41.667 0.00 0.00 0.00 3.36
155 156 3.504520 GGTTGCGGACTAATTTGAAAGGA 59.495 43.478 0.00 0.00 0.00 3.36
156 157 3.254657 TGGTTGCGGACTAATTTGAAAGG 59.745 43.478 0.00 0.00 0.00 3.11
157 158 4.497473 TGGTTGCGGACTAATTTGAAAG 57.503 40.909 0.00 0.00 0.00 2.62
158 159 4.920640 TTGGTTGCGGACTAATTTGAAA 57.079 36.364 0.00 0.00 0.00 2.69
159 160 4.098044 TGTTTGGTTGCGGACTAATTTGAA 59.902 37.500 0.00 0.00 0.00 2.69
160 161 3.632604 TGTTTGGTTGCGGACTAATTTGA 59.367 39.130 0.00 0.00 0.00 2.69
161 162 3.971150 TGTTTGGTTGCGGACTAATTTG 58.029 40.909 0.00 0.00 0.00 2.32
162 163 3.634910 ACTGTTTGGTTGCGGACTAATTT 59.365 39.130 0.00 0.00 0.00 1.82
163 164 3.219281 ACTGTTTGGTTGCGGACTAATT 58.781 40.909 0.00 0.00 0.00 1.40
164 165 2.858745 ACTGTTTGGTTGCGGACTAAT 58.141 42.857 0.00 0.00 0.00 1.73
165 166 2.335316 ACTGTTTGGTTGCGGACTAA 57.665 45.000 0.00 0.00 0.00 2.24
166 167 3.331150 CATACTGTTTGGTTGCGGACTA 58.669 45.455 0.00 0.00 0.00 2.59
167 168 2.151202 CATACTGTTTGGTTGCGGACT 58.849 47.619 0.00 0.00 0.00 3.85
168 169 1.401018 GCATACTGTTTGGTTGCGGAC 60.401 52.381 0.56 0.00 0.00 4.79
169 170 0.878416 GCATACTGTTTGGTTGCGGA 59.122 50.000 0.56 0.00 0.00 5.54
170 171 0.595588 TGCATACTGTTTGGTTGCGG 59.404 50.000 0.56 0.00 36.11 5.69
171 172 2.634982 ATGCATACTGTTTGGTTGCG 57.365 45.000 0.00 0.00 36.11 4.85
172 173 3.253230 GGAATGCATACTGTTTGGTTGC 58.747 45.455 0.00 0.00 0.00 4.17
173 174 3.057596 ACGGAATGCATACTGTTTGGTTG 60.058 43.478 0.00 0.00 0.00 3.77
174 175 3.153919 ACGGAATGCATACTGTTTGGTT 58.846 40.909 0.00 0.00 0.00 3.67
175 176 2.790433 ACGGAATGCATACTGTTTGGT 58.210 42.857 0.00 0.00 0.00 3.67
176 177 3.848272 AACGGAATGCATACTGTTTGG 57.152 42.857 0.00 0.00 32.62 3.28
177 178 4.793071 TGAAACGGAATGCATACTGTTTG 58.207 39.130 20.90 3.54 42.93 2.93
178 179 4.615912 GCTGAAACGGAATGCATACTGTTT 60.616 41.667 17.75 17.75 44.69 2.83
179 180 3.119849 GCTGAAACGGAATGCATACTGTT 60.120 43.478 0.00 1.85 37.22 3.16
180 181 2.420022 GCTGAAACGGAATGCATACTGT 59.580 45.455 0.00 0.00 0.00 3.55
181 182 2.419673 TGCTGAAACGGAATGCATACTG 59.580 45.455 0.00 0.00 0.00 2.74
182 183 2.420022 GTGCTGAAACGGAATGCATACT 59.580 45.455 0.00 0.00 36.04 2.12
183 184 2.161410 TGTGCTGAAACGGAATGCATAC 59.839 45.455 0.00 0.00 36.04 2.39
184 185 2.431454 TGTGCTGAAACGGAATGCATA 58.569 42.857 0.00 0.00 36.04 3.14
185 186 1.246649 TGTGCTGAAACGGAATGCAT 58.753 45.000 0.00 0.00 36.04 3.96
186 187 1.246649 ATGTGCTGAAACGGAATGCA 58.753 45.000 0.00 0.00 0.00 3.96
187 188 2.161410 TGTATGTGCTGAAACGGAATGC 59.839 45.455 0.00 0.00 0.00 3.56
188 189 3.684305 TCTGTATGTGCTGAAACGGAATG 59.316 43.478 0.00 0.00 0.00 2.67
189 190 3.684788 GTCTGTATGTGCTGAAACGGAAT 59.315 43.478 0.00 0.00 0.00 3.01
190 191 3.064207 GTCTGTATGTGCTGAAACGGAA 58.936 45.455 0.00 0.00 0.00 4.30
191 192 2.299013 AGTCTGTATGTGCTGAAACGGA 59.701 45.455 0.00 0.00 0.00 4.69
192 193 2.688507 AGTCTGTATGTGCTGAAACGG 58.311 47.619 0.00 0.00 0.00 4.44
193 194 3.304559 GCTAGTCTGTATGTGCTGAAACG 59.695 47.826 0.00 0.00 0.00 3.60
194 195 4.245660 TGCTAGTCTGTATGTGCTGAAAC 58.754 43.478 0.00 0.00 0.00 2.78
195 196 4.220602 TCTGCTAGTCTGTATGTGCTGAAA 59.779 41.667 0.00 0.00 0.00 2.69
196 197 3.763897 TCTGCTAGTCTGTATGTGCTGAA 59.236 43.478 0.00 0.00 0.00 3.02
197 198 3.356290 TCTGCTAGTCTGTATGTGCTGA 58.644 45.455 0.00 0.00 0.00 4.26
198 199 3.790152 TCTGCTAGTCTGTATGTGCTG 57.210 47.619 0.00 0.00 0.00 4.41
199 200 3.492309 GCATCTGCTAGTCTGTATGTGCT 60.492 47.826 0.00 0.00 38.21 4.40
200 201 2.799412 GCATCTGCTAGTCTGTATGTGC 59.201 50.000 0.00 0.00 38.21 4.57
212 213 2.684881 GGCAAAAAGCTAGCATCTGCTA 59.315 45.455 18.83 11.20 46.77 3.49
214 215 1.475682 AGGCAAAAAGCTAGCATCTGC 59.524 47.619 18.83 18.15 44.79 4.26
215 216 3.691118 TGTAGGCAAAAAGCTAGCATCTG 59.309 43.478 18.83 9.43 44.79 2.90
216 217 3.955471 TGTAGGCAAAAAGCTAGCATCT 58.045 40.909 18.83 0.15 44.79 2.90
217 218 4.907879 ATGTAGGCAAAAAGCTAGCATC 57.092 40.909 18.83 0.00 44.79 3.91
218 219 5.278660 GCATATGTAGGCAAAAAGCTAGCAT 60.279 40.000 18.83 0.65 44.79 3.79
219 220 4.036734 GCATATGTAGGCAAAAAGCTAGCA 59.963 41.667 18.83 0.00 44.79 3.49
220 221 4.276926 AGCATATGTAGGCAAAAAGCTAGC 59.723 41.667 6.62 6.62 44.79 3.42
221 222 5.333645 CGAGCATATGTAGGCAAAAAGCTAG 60.334 44.000 4.29 0.00 44.79 3.42
222 223 4.511454 CGAGCATATGTAGGCAAAAAGCTA 59.489 41.667 4.29 0.00 44.79 3.32
223 224 3.313526 CGAGCATATGTAGGCAAAAAGCT 59.686 43.478 4.29 0.00 44.79 3.74
224 225 3.548818 CCGAGCATATGTAGGCAAAAAGC 60.549 47.826 4.29 0.00 44.65 3.51
225 226 3.003689 CCCGAGCATATGTAGGCAAAAAG 59.996 47.826 4.29 0.00 35.07 2.27
226 227 2.948979 CCCGAGCATATGTAGGCAAAAA 59.051 45.455 4.29 0.00 35.07 1.94
227 228 2.571212 CCCGAGCATATGTAGGCAAAA 58.429 47.619 4.29 0.00 35.07 2.44
228 229 1.813862 GCCCGAGCATATGTAGGCAAA 60.814 52.381 17.23 0.00 40.20 3.68
229 230 0.250295 GCCCGAGCATATGTAGGCAA 60.250 55.000 17.23 0.00 40.20 4.52
230 231 1.371183 GCCCGAGCATATGTAGGCA 59.629 57.895 17.23 0.00 40.20 4.75
231 232 1.371183 TGCCCGAGCATATGTAGGC 59.629 57.895 15.99 15.99 46.52 3.93
241 242 3.787001 AACTAGGCCTGCCCGAGC 61.787 66.667 17.99 0.00 39.73 5.03
242 243 1.899437 TTCAACTAGGCCTGCCCGAG 61.899 60.000 17.99 6.75 41.66 4.63
243 244 1.485294 TTTCAACTAGGCCTGCCCGA 61.485 55.000 17.99 3.87 39.21 5.14
244 245 0.394352 ATTTCAACTAGGCCTGCCCG 60.394 55.000 17.99 3.40 39.21 6.13
245 246 2.729028 TATTTCAACTAGGCCTGCCC 57.271 50.000 17.99 0.00 36.58 5.36
246 247 3.621558 ACTTATTTCAACTAGGCCTGCC 58.378 45.455 17.99 0.00 0.00 4.85
247 248 5.278022 GCATACTTATTTCAACTAGGCCTGC 60.278 44.000 17.99 0.00 0.00 4.85
248 249 5.822519 TGCATACTTATTTCAACTAGGCCTG 59.177 40.000 17.99 8.18 0.00 4.85
249 250 6.001449 TGCATACTTATTTCAACTAGGCCT 57.999 37.500 11.78 11.78 0.00 5.19
250 251 6.693315 TTGCATACTTATTTCAACTAGGCC 57.307 37.500 0.00 0.00 0.00 5.19
251 252 9.023967 CATTTTGCATACTTATTTCAACTAGGC 57.976 33.333 0.00 0.00 0.00 3.93
252 253 9.023967 GCATTTTGCATACTTATTTCAACTAGG 57.976 33.333 0.00 0.00 44.26 3.02
270 271 2.159801 GCATCGTTTTCAGGCATTTTGC 60.160 45.455 0.00 0.00 44.08 3.68
271 272 3.058450 TGCATCGTTTTCAGGCATTTTG 58.942 40.909 0.00 0.00 0.00 2.44
272 273 3.319755 CTGCATCGTTTTCAGGCATTTT 58.680 40.909 0.00 0.00 33.50 1.82
273 274 2.353011 CCTGCATCGTTTTCAGGCATTT 60.353 45.455 0.00 0.00 40.63 2.32
274 275 1.203052 CCTGCATCGTTTTCAGGCATT 59.797 47.619 0.00 0.00 40.63 3.56
275 276 0.813184 CCTGCATCGTTTTCAGGCAT 59.187 50.000 0.00 0.00 40.63 4.40
276 277 2.256391 CCTGCATCGTTTTCAGGCA 58.744 52.632 0.00 0.00 40.63 4.75
298 299 2.159801 GCATCGTTTTCAGGCATTTTGC 60.160 45.455 0.00 0.00 44.08 3.68
299 300 3.058450 TGCATCGTTTTCAGGCATTTTG 58.942 40.909 0.00 0.00 0.00 2.44
300 301 3.319755 CTGCATCGTTTTCAGGCATTTT 58.680 40.909 0.00 0.00 33.50 1.82
301 302 2.353011 CCTGCATCGTTTTCAGGCATTT 60.353 45.455 0.00 0.00 40.63 2.32
302 303 1.203052 CCTGCATCGTTTTCAGGCATT 59.797 47.619 0.00 0.00 40.63 3.56
303 304 0.813184 CCTGCATCGTTTTCAGGCAT 59.187 50.000 0.00 0.00 40.63 4.40
304 305 2.256391 CCTGCATCGTTTTCAGGCA 58.744 52.632 0.00 0.00 40.63 4.75
307 308 4.481930 TTGTTACCTGCATCGTTTTCAG 57.518 40.909 0.00 0.00 0.00 3.02
308 309 4.902443 TTTGTTACCTGCATCGTTTTCA 57.098 36.364 0.00 0.00 0.00 2.69
309 310 4.089923 GCATTTGTTACCTGCATCGTTTTC 59.910 41.667 0.00 0.00 35.96 2.29
310 311 3.987220 GCATTTGTTACCTGCATCGTTTT 59.013 39.130 0.00 0.00 35.96 2.43
311 312 3.005261 TGCATTTGTTACCTGCATCGTTT 59.995 39.130 0.00 0.00 40.75 3.60
312 313 2.556189 TGCATTTGTTACCTGCATCGTT 59.444 40.909 0.00 0.00 40.75 3.85
313 314 2.158559 TGCATTTGTTACCTGCATCGT 58.841 42.857 0.00 0.00 40.75 3.73
314 315 2.917701 TGCATTTGTTACCTGCATCG 57.082 45.000 0.00 0.00 40.75 3.84
318 319 3.126858 TCTTCGATGCATTTGTTACCTGC 59.873 43.478 0.00 0.00 36.45 4.85
319 320 4.944962 TCTTCGATGCATTTGTTACCTG 57.055 40.909 0.00 0.00 0.00 4.00
320 321 4.271049 CGATCTTCGATGCATTTGTTACCT 59.729 41.667 0.00 0.00 43.74 3.08
321 322 4.518217 CGATCTTCGATGCATTTGTTACC 58.482 43.478 0.00 0.00 43.74 2.85
322 323 3.962481 GCGATCTTCGATGCATTTGTTAC 59.038 43.478 0.00 0.00 43.74 2.50
323 324 3.002246 GGCGATCTTCGATGCATTTGTTA 59.998 43.478 0.00 0.00 43.74 2.41
324 325 2.223340 GGCGATCTTCGATGCATTTGTT 60.223 45.455 0.00 0.00 43.74 2.83
325 326 1.331756 GGCGATCTTCGATGCATTTGT 59.668 47.619 0.00 0.00 43.74 2.83
326 327 1.334419 GGGCGATCTTCGATGCATTTG 60.334 52.381 0.00 0.00 43.74 2.32
327 328 0.947244 GGGCGATCTTCGATGCATTT 59.053 50.000 0.00 0.00 43.74 2.32
328 329 0.886490 GGGGCGATCTTCGATGCATT 60.886 55.000 0.00 0.00 43.74 3.56
329 330 1.302033 GGGGCGATCTTCGATGCAT 60.302 57.895 0.00 0.00 43.74 3.96
330 331 2.108976 GGGGCGATCTTCGATGCA 59.891 61.111 0.32 0.00 43.74 3.96
331 332 2.666526 GGGGGCGATCTTCGATGC 60.667 66.667 0.32 0.00 43.74 3.91
332 333 2.356313 CGGGGGCGATCTTCGATG 60.356 66.667 0.32 0.00 43.74 3.84
333 334 2.838225 ACGGGGGCGATCTTCGAT 60.838 61.111 0.32 0.00 43.74 3.59
334 335 3.524606 GACGGGGGCGATCTTCGA 61.525 66.667 0.32 0.00 43.74 3.71
335 336 3.528370 AGACGGGGGCGATCTTCG 61.528 66.667 0.00 0.00 43.89 3.79
336 337 2.107141 CAGACGGGGGCGATCTTC 59.893 66.667 0.00 0.00 0.00 2.87
337 338 4.162690 GCAGACGGGGGCGATCTT 62.163 66.667 0.00 0.00 0.00 2.40
343 344 4.176752 CTTAGGGCAGACGGGGGC 62.177 72.222 0.00 0.00 0.00 5.80
344 345 4.176752 GCTTAGGGCAGACGGGGG 62.177 72.222 0.00 0.00 41.35 5.40
345 346 1.749334 CTAGCTTAGGGCAGACGGGG 61.749 65.000 0.00 0.00 44.79 5.73
346 347 1.043673 ACTAGCTTAGGGCAGACGGG 61.044 60.000 0.00 0.00 44.79 5.28
347 348 0.103208 CACTAGCTTAGGGCAGACGG 59.897 60.000 0.00 0.00 44.79 4.79
348 349 3.650409 CACTAGCTTAGGGCAGACG 57.350 57.895 0.00 0.00 44.79 4.18
394 395 3.084786 GCCAGTACTCCAGCATTTTTCT 58.915 45.455 0.00 0.00 0.00 2.52
442 443 0.887387 TTCCGCCCGTCCTTCTTTTG 60.887 55.000 0.00 0.00 0.00 2.44
498 499 3.435186 GCGGGGCTGACTTTGCTC 61.435 66.667 0.00 0.00 0.00 4.26
544 545 2.450243 GGTGGAGGGAGTGGGAGA 59.550 66.667 0.00 0.00 0.00 3.71
593 616 0.396556 GTCCCTCCCAGTCTCTCTCC 60.397 65.000 0.00 0.00 0.00 3.71
594 617 0.396556 GGTCCCTCCCAGTCTCTCTC 60.397 65.000 0.00 0.00 0.00 3.20
933 956 4.899239 GATGAGGAGGGGCGTGCG 62.899 72.222 0.00 0.00 0.00 5.34
934 957 4.554036 GGATGAGGAGGGGCGTGC 62.554 72.222 0.00 0.00 0.00 5.34
935 958 2.765807 AGGATGAGGAGGGGCGTG 60.766 66.667 0.00 0.00 0.00 5.34
936 959 2.444895 GAGGATGAGGAGGGGCGT 60.445 66.667 0.00 0.00 0.00 5.68
937 960 3.610669 CGAGGATGAGGAGGGGCG 61.611 72.222 0.00 0.00 0.00 6.13
938 961 2.444895 ACGAGGATGAGGAGGGGC 60.445 66.667 0.00 0.00 0.00 5.80
939 962 2.196925 CGACGAGGATGAGGAGGGG 61.197 68.421 0.00 0.00 0.00 4.79
940 963 2.196925 CCGACGAGGATGAGGAGGG 61.197 68.421 0.00 0.00 45.00 4.30
943 966 1.824329 GAGCCGACGAGGATGAGGA 60.824 63.158 0.00 0.00 39.82 3.71
945 968 2.725008 GGAGCCGACGAGGATGAG 59.275 66.667 0.00 0.00 39.82 2.90
946 969 3.209812 CGGAGCCGACGAGGATGA 61.210 66.667 2.00 0.00 39.82 2.92
1075 1100 2.202878 GGCCTGCTCGCGAACATA 60.203 61.111 13.30 0.00 0.00 2.29
1314 1339 4.039730 CGGATGATGAGAAACTACCAGGAT 59.960 45.833 0.00 0.00 0.00 3.24
1315 1340 3.384789 CGGATGATGAGAAACTACCAGGA 59.615 47.826 0.00 0.00 0.00 3.86
1317 1342 3.126831 GCGGATGATGAGAAACTACCAG 58.873 50.000 0.00 0.00 0.00 4.00
1318 1343 2.481276 CGCGGATGATGAGAAACTACCA 60.481 50.000 0.00 0.00 0.00 3.25
1322 1347 0.176680 AGCGCGGATGATGAGAAACT 59.823 50.000 8.83 0.00 0.00 2.66
1343 1368 4.451900 CCAGTTGGGGCAAATACTAGTAG 58.548 47.826 8.85 0.00 0.00 2.57
1398 1423 6.253083 GCAACGATTGGAAGTAGTAGTAGAAC 59.747 42.308 0.00 0.00 0.00 3.01
1505 1530 5.524511 TCATATTTCCGTTCTTGAACACG 57.475 39.130 13.05 1.75 36.12 4.49
1541 1569 3.658725 ACAGATGGAGTGCCTAGGTATT 58.341 45.455 11.31 1.72 34.31 1.89
1542 1570 3.336509 ACAGATGGAGTGCCTAGGTAT 57.663 47.619 11.31 0.00 34.31 2.73
1543 1571 2.766263 CAACAGATGGAGTGCCTAGGTA 59.234 50.000 11.31 2.03 34.31 3.08
1544 1572 1.556911 CAACAGATGGAGTGCCTAGGT 59.443 52.381 11.31 0.00 34.31 3.08
1545 1573 2.322355 CAACAGATGGAGTGCCTAGG 57.678 55.000 3.67 3.67 34.31 3.02
1569 1597 6.764560 GGAACCTATTACCGAAATGAGCTAAA 59.235 38.462 0.00 0.00 0.00 1.85
1607 1635 3.004734 GCATTACAAACAGCACTCCAAGT 59.995 43.478 0.00 0.00 0.00 3.16
1608 1636 3.004629 TGCATTACAAACAGCACTCCAAG 59.995 43.478 0.00 0.00 31.05 3.61
1609 1637 2.954989 TGCATTACAAACAGCACTCCAA 59.045 40.909 0.00 0.00 31.05 3.53
1610 1638 2.580962 TGCATTACAAACAGCACTCCA 58.419 42.857 0.00 0.00 31.05 3.86
1611 1639 3.004734 AGTTGCATTACAAACAGCACTCC 59.995 43.478 0.00 0.00 40.82 3.85
1612 1640 4.228912 AGTTGCATTACAAACAGCACTC 57.771 40.909 0.00 0.00 40.82 3.51
1613 1641 4.142182 ACAAGTTGCATTACAAACAGCACT 60.142 37.500 1.81 0.00 40.82 4.40
1614 1642 4.026640 CACAAGTTGCATTACAAACAGCAC 60.027 41.667 1.81 0.00 40.82 4.40
1617 1645 4.930963 TCCACAAGTTGCATTACAAACAG 58.069 39.130 1.81 0.00 40.82 3.16
1620 1648 5.724328 TGTTTCCACAAGTTGCATTACAAA 58.276 33.333 1.81 0.00 40.82 2.83
1659 1688 1.881903 CGTTCTGAGCTGAGGCAGGA 61.882 60.000 0.00 0.00 41.70 3.86
1744 1773 5.630680 CAGAAGGTAAGCGTAACGAACTTAA 59.369 40.000 0.00 0.00 0.00 1.85
1757 1786 3.625313 GCCAGAAAGATCAGAAGGTAAGC 59.375 47.826 0.00 0.00 0.00 3.09
1870 1899 9.890352 GGCAGATTTTTATTTTTATTTGTTGCA 57.110 25.926 0.00 0.00 0.00 4.08
1877 1906 9.218440 CCACACAGGCAGATTTTTATTTTTATT 57.782 29.630 0.00 0.00 0.00 1.40
1878 1907 8.776376 CCACACAGGCAGATTTTTATTTTTAT 57.224 30.769 0.00 0.00 0.00 1.40
1928 1957 8.185505 TGTCGTTAGAATTTGTTTTTAGCAACT 58.814 29.630 0.00 0.00 0.00 3.16
1931 1960 7.164498 CGTTGTCGTTAGAATTTGTTTTTAGCA 59.836 33.333 0.00 0.00 0.00 3.49
1977 2006 5.689383 ACATTTAAGCACATTCTTGTCGT 57.311 34.783 0.00 0.00 32.34 4.34
1978 2007 9.425893 CTAATACATTTAAGCACATTCTTGTCG 57.574 33.333 0.00 0.00 32.34 4.35
2033 2062 9.394477 CACCTTGTAAATGTTTAAAGCTACTTC 57.606 33.333 0.00 0.00 0.00 3.01
2075 2104 4.042809 TGCCCCCTCCATAAATATACTGTG 59.957 45.833 0.00 0.00 0.00 3.66
2216 2246 3.057969 TCTCACCTTGAAATCGTGCAT 57.942 42.857 0.00 0.00 0.00 3.96
2575 2606 7.067372 TGGAATTGTGGATGTGATATTTCTGTC 59.933 37.037 0.00 0.00 0.00 3.51
2595 2626 9.178758 GATAACTAGAAAAGGACATGTGGAATT 57.821 33.333 1.15 0.00 0.00 2.17
2596 2627 7.775561 GGATAACTAGAAAAGGACATGTGGAAT 59.224 37.037 1.15 0.00 0.00 3.01
2597 2628 7.037586 AGGATAACTAGAAAAGGACATGTGGAA 60.038 37.037 1.15 0.00 0.00 3.53
2598 2629 6.443849 AGGATAACTAGAAAAGGACATGTGGA 59.556 38.462 1.15 0.00 0.00 4.02
2599 2630 6.653989 AGGATAACTAGAAAAGGACATGTGG 58.346 40.000 1.15 0.00 0.00 4.17
2600 2631 7.331026 TGAGGATAACTAGAAAAGGACATGTG 58.669 38.462 1.15 0.00 0.00 3.21
2601 2632 7.496346 TGAGGATAACTAGAAAAGGACATGT 57.504 36.000 0.00 0.00 0.00 3.21
2602 2633 7.010552 CGTTGAGGATAACTAGAAAAGGACATG 59.989 40.741 0.00 0.00 0.00 3.21
2616 2647 7.298507 TGCAGTTTATTACGTTGAGGATAAC 57.701 36.000 0.00 0.00 0.00 1.89
2820 2851 4.770795 CTCCTACCAAACATAAGGACAGG 58.229 47.826 0.00 0.00 34.45 4.00
2821 2852 4.192317 GCTCCTACCAAACATAAGGACAG 58.808 47.826 0.00 0.00 34.45 3.51
2822 2853 3.585289 TGCTCCTACCAAACATAAGGACA 59.415 43.478 0.00 0.00 34.45 4.02
2850 2882 6.272090 ACCAAAATGTAACCATTCCATTCCTT 59.728 34.615 0.00 0.00 40.42 3.36
3033 3097 2.025793 TGTGTTTCCTGGGTGTTCTTCA 60.026 45.455 0.00 0.00 0.00 3.02
3046 3110 5.412594 TCTGTATTCAGCATTCTGTGTTTCC 59.587 40.000 0.00 0.00 41.10 3.13
3053 3117 6.592994 TCTGTTCTTCTGTATTCAGCATTCTG 59.407 38.462 0.00 0.00 41.10 3.02
3054 3118 6.705302 TCTGTTCTTCTGTATTCAGCATTCT 58.295 36.000 0.00 0.00 41.10 2.40
3055 3119 6.974932 TCTGTTCTTCTGTATTCAGCATTC 57.025 37.500 0.00 0.00 41.10 2.67
3056 3120 6.883217 ACATCTGTTCTTCTGTATTCAGCATT 59.117 34.615 0.00 0.00 41.10 3.56
3057 3121 6.315642 CACATCTGTTCTTCTGTATTCAGCAT 59.684 38.462 0.00 0.00 41.10 3.79
3058 3122 5.640783 CACATCTGTTCTTCTGTATTCAGCA 59.359 40.000 0.00 0.00 41.10 4.41
3059 3123 5.447010 GCACATCTGTTCTTCTGTATTCAGC 60.447 44.000 0.00 0.00 41.10 4.26
3352 3442 2.741985 CGCATCCTCACGTTGGCA 60.742 61.111 0.00 0.00 0.00 4.92
3424 3514 4.704833 GCAGCTCCCTCCGCAACA 62.705 66.667 0.00 0.00 0.00 3.33
3549 3639 3.966543 CCCTCCCCAACCTTGCGT 61.967 66.667 0.00 0.00 0.00 5.24
3618 3717 0.813184 CCAAATCAAGCAGGCGACAT 59.187 50.000 0.00 0.00 0.00 3.06
3624 3723 2.369394 GGTACCTCCAAATCAAGCAGG 58.631 52.381 4.06 0.00 35.97 4.85
3626 3725 1.948611 GCGGTACCTCCAAATCAAGCA 60.949 52.381 10.90 0.00 35.57 3.91
3662 3761 4.371624 CCACAGAATGGCATATTCCCTA 57.628 45.455 0.00 0.00 43.24 3.53
3736 3838 2.827921 ACTGTAATAGGTCGGTTCCGTT 59.172 45.455 11.04 0.75 0.00 4.44
3964 4069 7.456269 AGGAAGACCTGGGTTTCTATATATGAG 59.544 40.741 0.00 0.00 45.92 2.90
4039 4144 7.116075 TCTATACAAACCCAACATACTTGCAT 58.884 34.615 0.00 0.00 0.00 3.96
4041 4146 6.995511 TCTATACAAACCCAACATACTTGC 57.004 37.500 0.00 0.00 0.00 4.01
4225 4497 7.555087 TGGAAAATATAAAAGGAGCAACATGG 58.445 34.615 0.00 0.00 0.00 3.66
4407 4691 3.306472 AACTGGGCCAACAAAGAAGTA 57.694 42.857 8.04 0.00 0.00 2.24
4472 4756 2.300437 ACTAGACACAGCAGAGTTTCCC 59.700 50.000 0.00 0.00 0.00 3.97
4477 4761 5.409826 GCAAATAAACTAGACACAGCAGAGT 59.590 40.000 0.00 0.00 0.00 3.24
4517 4801 1.537202 GCACTGCCAGAGTAAACTTGG 59.463 52.381 0.00 6.86 31.73 3.61
4677 4961 1.669760 CAGCACGGCGGTTCCTTAA 60.670 57.895 13.24 0.00 0.00 1.85
4844 5130 9.817809 CACACGGGTAGCAAATTCTATATATAT 57.182 33.333 0.00 0.00 0.00 0.86
4845 5131 9.027202 TCACACGGGTAGCAAATTCTATATATA 57.973 33.333 0.00 0.00 0.00 0.86
4846 5132 7.903145 TCACACGGGTAGCAAATTCTATATAT 58.097 34.615 0.00 0.00 0.00 0.86
4847 5133 7.292713 TCACACGGGTAGCAAATTCTATATA 57.707 36.000 0.00 0.00 0.00 0.86
4848 5134 6.169557 TCACACGGGTAGCAAATTCTATAT 57.830 37.500 0.00 0.00 0.00 0.86
4849 5135 5.601583 TCACACGGGTAGCAAATTCTATA 57.398 39.130 0.00 0.00 0.00 1.31
4850 5136 4.481368 TCACACGGGTAGCAAATTCTAT 57.519 40.909 0.00 0.00 0.00 1.98
4851 5137 3.965379 TCACACGGGTAGCAAATTCTA 57.035 42.857 0.00 0.00 0.00 2.10
4852 5138 2.812011 GTTCACACGGGTAGCAAATTCT 59.188 45.455 0.00 0.00 0.00 2.40
4853 5139 2.812011 AGTTCACACGGGTAGCAAATTC 59.188 45.455 0.00 0.00 0.00 2.17
4887 5173 2.695359 TGGAAAAGCGCTAGGTTACTG 58.305 47.619 12.05 0.00 37.04 2.74
4933 5222 7.043325 GCAAGATTTCTTAGTCTATACACCACG 60.043 40.741 0.00 0.00 34.28 4.94
4975 5264 3.544684 TCAATTGCCGTAATCTGAGCAT 58.455 40.909 0.00 0.00 34.72 3.79
4989 5278 6.476243 AAAGATGCAGTTTCATTCAATTGC 57.524 33.333 0.00 0.00 0.00 3.56
5009 5298 4.813027 ACATGCAGGAACTTGCAATAAAG 58.187 39.130 14.80 6.46 43.22 1.85
5053 5342 5.174398 CACACAGTCAAAAGACAATGCATTC 59.826 40.000 9.53 0.00 0.00 2.67
5091 5380 3.057969 ACCAAGAAACAGCGATGATCA 57.942 42.857 8.12 0.00 0.00 2.92
5098 5388 2.345641 CGTGATCTACCAAGAAACAGCG 59.654 50.000 0.00 0.00 34.73 5.18
5362 5653 2.681976 GCTGTGCCACTATCCAGATGTT 60.682 50.000 0.00 0.00 0.00 2.71
5464 5757 8.276252 TCAAAGACAAGCCATTAATTACCTAC 57.724 34.615 0.00 0.00 0.00 3.18
5552 5845 2.037902 TGGTTCAGGACATCAAGCGTTA 59.962 45.455 0.00 0.00 0.00 3.18
5599 5892 5.106396 GCTCTCTGTATGCACAAAACAAGAT 60.106 40.000 0.00 0.00 33.22 2.40
5602 5895 3.253188 GGCTCTCTGTATGCACAAAACAA 59.747 43.478 0.00 0.00 33.22 2.83
5606 5899 3.769300 TCTAGGCTCTCTGTATGCACAAA 59.231 43.478 0.00 0.00 33.22 2.83
5630 5923 2.305635 TGGATCACAGTAGGCAACACAT 59.694 45.455 0.00 0.00 41.41 3.21
5634 5927 3.266510 TCATGGATCACAGTAGGCAAC 57.733 47.619 0.00 0.00 0.00 4.17
5635 5928 3.455543 TCATCATGGATCACAGTAGGCAA 59.544 43.478 0.00 0.00 0.00 4.52
5638 5931 4.952071 ACTCATCATGGATCACAGTAGG 57.048 45.455 0.00 0.00 0.00 3.18
5639 5932 5.047448 CCCTACTCATCATGGATCACAGTAG 60.047 48.000 0.00 3.08 0.00 2.57
5641 5934 3.645212 CCCTACTCATCATGGATCACAGT 59.355 47.826 0.00 0.00 0.00 3.55
5642 5935 3.007723 CCCCTACTCATCATGGATCACAG 59.992 52.174 0.00 0.00 0.00 3.66
5643 5936 2.974794 CCCCTACTCATCATGGATCACA 59.025 50.000 0.00 0.00 0.00 3.58
5644 5937 2.289945 GCCCCTACTCATCATGGATCAC 60.290 54.545 0.00 0.00 0.00 3.06
5669 5965 7.040340 TCCTATCCTAAGAAAAGATAGCGACAG 60.040 40.741 0.00 0.00 38.66 3.51
5673 5969 7.455641 TCTCCTATCCTAAGAAAAGATAGCG 57.544 40.000 0.00 0.00 38.66 4.26
5731 6027 0.675633 ATCCTTGCAACACACCAAGC 59.324 50.000 0.00 0.00 37.66 4.01
5738 6034 1.873591 ACGAGACAATCCTTGCAACAC 59.126 47.619 0.00 0.00 0.00 3.32
5789 6085 1.084370 CGAGACGTGGCCTGGAATTC 61.084 60.000 3.32 0.00 0.00 2.17
5812 6108 1.447317 AAAGACAACCAGCACGGCAG 61.447 55.000 0.00 0.00 39.03 4.85
5813 6109 1.034838 AAAAGACAACCAGCACGGCA 61.035 50.000 0.00 0.00 39.03 5.69
5814 6110 0.594796 CAAAAGACAACCAGCACGGC 60.595 55.000 0.00 0.00 39.03 5.68
5815 6111 0.738389 ACAAAAGACAACCAGCACGG 59.262 50.000 0.00 0.00 42.50 4.94
5816 6112 1.268539 GGACAAAAGACAACCAGCACG 60.269 52.381 0.00 0.00 0.00 5.34
5817 6113 2.024414 AGGACAAAAGACAACCAGCAC 58.976 47.619 0.00 0.00 0.00 4.40
5818 6114 2.023673 CAGGACAAAAGACAACCAGCA 58.976 47.619 0.00 0.00 0.00 4.41
5819 6115 2.291741 CTCAGGACAAAAGACAACCAGC 59.708 50.000 0.00 0.00 0.00 4.85
5829 6125 1.075601 ATCCCCAGCTCAGGACAAAA 58.924 50.000 3.31 0.00 34.20 2.44
5945 6242 3.797256 CACTAAGCGCTCTACCATTACAC 59.203 47.826 12.06 0.00 0.00 2.90
5946 6243 3.181479 CCACTAAGCGCTCTACCATTACA 60.181 47.826 12.06 0.00 0.00 2.41
5952 6249 0.102663 GGACCACTAAGCGCTCTACC 59.897 60.000 12.06 4.15 0.00 3.18
5962 6259 2.777972 CGGCCGATCGGACCACTAA 61.778 63.158 37.64 0.00 41.23 2.24
5963 6260 3.214123 CGGCCGATCGGACCACTA 61.214 66.667 37.64 0.00 41.23 2.74
5968 6265 2.354773 GATGTCGGCCGATCGGAC 60.355 66.667 37.64 34.39 43.09 4.79
6061 6362 3.823304 AGTTCCTGCAATGAAGAAACTCC 59.177 43.478 0.00 0.00 0.00 3.85
6140 6441 7.573968 ATGGTCACTTGAAGATAAATAAGCC 57.426 36.000 0.00 0.00 0.00 4.35
6175 6476 6.323996 ACTCCATTTCTTGACACTATCGGATA 59.676 38.462 0.00 0.00 0.00 2.59
6442 6743 0.758123 AGCTTAGGATGGAGCTGCTC 59.242 55.000 21.17 21.17 46.82 4.26
6457 6758 2.567049 CGGGAGAACGACGAGCTT 59.433 61.111 0.00 0.00 35.47 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.