Multiple sequence alignment - TraesCS4D01G254800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G254800 chr4D 100.000 4011 0 0 1 4011 423694672 423698682 0.000000e+00 7408.0
1 TraesCS4D01G254800 chr4A 93.723 2549 99 32 1504 4011 40444127 40441599 0.000000e+00 3764.0
2 TraesCS4D01G254800 chr4A 87.955 880 45 25 535 1370 40444991 40444129 0.000000e+00 981.0
3 TraesCS4D01G254800 chr4A 87.500 280 17 5 216 481 40445275 40445000 1.400000e-79 307.0
4 TraesCS4D01G254800 chr4B 95.567 2301 64 19 1621 3888 520224083 520226378 0.000000e+00 3650.0
5 TraesCS4D01G254800 chr4B 85.564 1046 60 31 574 1566 520222982 520223989 0.000000e+00 1011.0
6 TraesCS4D01G254800 chr4B 91.071 112 4 4 372 481 520222847 520222954 3.230000e-31 147.0
7 TraesCS4D01G254800 chr4B 85.882 85 10 2 216 299 520222744 520222827 5.520000e-14 89.8
8 TraesCS4D01G254800 chr5B 88.998 818 84 2 2002 2818 38364554 38363742 0.000000e+00 1007.0
9 TraesCS4D01G254800 chr1D 94.444 216 12 0 1 216 64150335 64150120 2.310000e-87 333.0
10 TraesCS4D01G254800 chr3D 92.558 215 12 2 5 219 586210585 586210375 5.040000e-79 305.0
11 TraesCS4D01G254800 chr3D 82.166 157 25 3 61 216 74346308 74346462 9.050000e-27 132.0
12 TraesCS4D01G254800 chr5D 82.938 211 22 7 6 216 74108857 74109053 1.150000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G254800 chr4D 423694672 423698682 4010 False 7408.00 7408 100.000 1 4011 1 chr4D.!!$F1 4010
1 TraesCS4D01G254800 chr4A 40441599 40445275 3676 True 1684.00 3764 89.726 216 4011 3 chr4A.!!$R1 3795
2 TraesCS4D01G254800 chr4B 520222744 520226378 3634 False 1224.45 3650 89.521 216 3888 4 chr4B.!!$F1 3672
3 TraesCS4D01G254800 chr5B 38363742 38364554 812 True 1007.00 1007 88.998 2002 2818 1 chr5B.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.103755 TCTCTCCTCGCATGCATCAC 59.896 55.0 19.57 0.00 0.00 3.06 F
58 59 0.241749 CATGCATCACGGTTGCTGTT 59.758 50.0 0.00 0.00 40.77 3.16 F
170 171 0.259356 AGCTAGCTCCGAACCTAGGT 59.741 55.0 12.68 9.21 37.51 3.08 F
1904 2064 0.302890 CGCGGCTTTCTTATCTGCAG 59.697 55.0 7.63 7.63 32.64 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1904 0.038744 AGTTGCTATGCAGTGCCCTT 59.961 50.0 13.72 0.0 40.61 3.95 R
1904 2064 0.620556 TCTTGATGTTGAGGAGGGCC 59.379 55.0 0.00 0.0 0.00 5.80 R
2143 2303 0.806868 ATGATTGTTCAGCAGCACCG 59.193 50.0 0.00 0.0 34.73 4.94 R
3101 3292 0.482446 AGTCTGCCATGGTTCCCAAA 59.518 50.0 14.67 0.0 36.95 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.326968 CATACCATTTTTCTTTCCCTCTCTC 57.673 40.000 0.00 0.00 0.00 3.20
25 26 5.590976 ACCATTTTTCTTTCCCTCTCTCT 57.409 39.130 0.00 0.00 0.00 3.10
26 27 6.704056 ACCATTTTTCTTTCCCTCTCTCTA 57.296 37.500 0.00 0.00 0.00 2.43
27 28 7.277405 ACCATTTTTCTTTCCCTCTCTCTAT 57.723 36.000 0.00 0.00 0.00 1.98
28 29 7.342581 ACCATTTTTCTTTCCCTCTCTCTATC 58.657 38.462 0.00 0.00 0.00 2.08
29 30 7.183657 ACCATTTTTCTTTCCCTCTCTCTATCT 59.816 37.037 0.00 0.00 0.00 1.98
30 31 7.714813 CCATTTTTCTTTCCCTCTCTCTATCTC 59.285 40.741 0.00 0.00 0.00 2.75
31 32 8.485392 CATTTTTCTTTCCCTCTCTCTATCTCT 58.515 37.037 0.00 0.00 0.00 3.10
32 33 7.654022 TTTTCTTTCCCTCTCTCTATCTCTC 57.346 40.000 0.00 0.00 0.00 3.20
33 34 6.590656 TTCTTTCCCTCTCTCTATCTCTCT 57.409 41.667 0.00 0.00 0.00 3.10
34 35 6.187727 TCTTTCCCTCTCTCTATCTCTCTC 57.812 45.833 0.00 0.00 0.00 3.20
35 36 4.993705 TTCCCTCTCTCTATCTCTCTCC 57.006 50.000 0.00 0.00 0.00 3.71
36 37 4.228237 TCCCTCTCTCTATCTCTCTCCT 57.772 50.000 0.00 0.00 0.00 3.69
37 38 4.168101 TCCCTCTCTCTATCTCTCTCCTC 58.832 52.174 0.00 0.00 0.00 3.71
38 39 3.055819 CCCTCTCTCTATCTCTCTCCTCG 60.056 56.522 0.00 0.00 0.00 4.63
39 40 3.589988 CTCTCTCTATCTCTCTCCTCGC 58.410 54.545 0.00 0.00 0.00 5.03
40 41 2.969262 TCTCTCTATCTCTCTCCTCGCA 59.031 50.000 0.00 0.00 0.00 5.10
41 42 3.582647 TCTCTCTATCTCTCTCCTCGCAT 59.417 47.826 0.00 0.00 0.00 4.73
42 43 3.673902 TCTCTATCTCTCTCCTCGCATG 58.326 50.000 0.00 0.00 0.00 4.06
43 44 2.158559 TCTATCTCTCTCCTCGCATGC 58.841 52.381 7.91 7.91 0.00 4.06
44 45 1.885233 CTATCTCTCTCCTCGCATGCA 59.115 52.381 19.57 4.02 0.00 3.96
45 46 1.340088 ATCTCTCTCCTCGCATGCAT 58.660 50.000 19.57 0.00 0.00 3.96
46 47 0.672889 TCTCTCTCCTCGCATGCATC 59.327 55.000 19.57 0.00 0.00 3.91
47 48 0.388294 CTCTCTCCTCGCATGCATCA 59.612 55.000 19.57 0.00 0.00 3.07
48 49 0.103755 TCTCTCCTCGCATGCATCAC 59.896 55.000 19.57 0.00 0.00 3.06
49 50 1.213733 CTCTCCTCGCATGCATCACG 61.214 60.000 19.57 11.51 0.00 4.35
50 51 2.202919 TCCTCGCATGCATCACGG 60.203 61.111 19.57 9.70 0.00 4.94
51 52 2.512286 CCTCGCATGCATCACGGT 60.512 61.111 19.57 0.00 0.00 4.83
52 53 2.108514 CCTCGCATGCATCACGGTT 61.109 57.895 19.57 0.00 0.00 4.44
53 54 1.061411 CTCGCATGCATCACGGTTG 59.939 57.895 19.57 0.00 0.00 3.77
54 55 2.577644 CGCATGCATCACGGTTGC 60.578 61.111 19.57 3.65 40.55 4.17
55 56 2.879907 GCATGCATCACGGTTGCT 59.120 55.556 14.21 0.00 40.77 3.91
56 57 1.515519 GCATGCATCACGGTTGCTG 60.516 57.895 14.21 3.95 40.77 4.41
57 58 1.878070 CATGCATCACGGTTGCTGT 59.122 52.632 0.00 0.00 40.77 4.40
58 59 0.241749 CATGCATCACGGTTGCTGTT 59.758 50.000 0.00 0.00 40.77 3.16
59 60 1.468127 CATGCATCACGGTTGCTGTTA 59.532 47.619 0.00 0.00 40.77 2.41
60 61 0.871722 TGCATCACGGTTGCTGTTAC 59.128 50.000 6.39 0.00 40.77 2.50
61 62 1.156736 GCATCACGGTTGCTGTTACT 58.843 50.000 0.00 0.00 37.14 2.24
62 63 1.535462 GCATCACGGTTGCTGTTACTT 59.465 47.619 0.00 0.00 37.14 2.24
63 64 2.031157 GCATCACGGTTGCTGTTACTTT 60.031 45.455 0.00 0.00 37.14 2.66
64 65 3.550030 GCATCACGGTTGCTGTTACTTTT 60.550 43.478 0.00 0.00 37.14 2.27
65 66 3.955771 TCACGGTTGCTGTTACTTTTC 57.044 42.857 0.00 0.00 0.00 2.29
66 67 3.537580 TCACGGTTGCTGTTACTTTTCT 58.462 40.909 0.00 0.00 0.00 2.52
67 68 3.942748 TCACGGTTGCTGTTACTTTTCTT 59.057 39.130 0.00 0.00 0.00 2.52
68 69 4.034742 TCACGGTTGCTGTTACTTTTCTTC 59.965 41.667 0.00 0.00 0.00 2.87
69 70 4.035208 CACGGTTGCTGTTACTTTTCTTCT 59.965 41.667 0.00 0.00 0.00 2.85
70 71 4.638865 ACGGTTGCTGTTACTTTTCTTCTT 59.361 37.500 0.00 0.00 0.00 2.52
71 72 5.124936 ACGGTTGCTGTTACTTTTCTTCTTT 59.875 36.000 0.00 0.00 0.00 2.52
72 73 6.033966 CGGTTGCTGTTACTTTTCTTCTTTT 58.966 36.000 0.00 0.00 0.00 2.27
73 74 6.020678 CGGTTGCTGTTACTTTTCTTCTTTTG 60.021 38.462 0.00 0.00 0.00 2.44
74 75 6.237835 GGTTGCTGTTACTTTTCTTCTTTTGC 60.238 38.462 0.00 0.00 0.00 3.68
75 76 6.207691 TGCTGTTACTTTTCTTCTTTTGCT 57.792 33.333 0.00 0.00 0.00 3.91
76 77 6.630071 TGCTGTTACTTTTCTTCTTTTGCTT 58.370 32.000 0.00 0.00 0.00 3.91
77 78 7.767261 TGCTGTTACTTTTCTTCTTTTGCTTA 58.233 30.769 0.00 0.00 0.00 3.09
78 79 7.915397 TGCTGTTACTTTTCTTCTTTTGCTTAG 59.085 33.333 0.00 0.00 0.00 2.18
79 80 7.096436 GCTGTTACTTTTCTTCTTTTGCTTAGC 60.096 37.037 0.00 0.00 0.00 3.09
80 81 7.996385 TGTTACTTTTCTTCTTTTGCTTAGCT 58.004 30.769 5.60 0.00 0.00 3.32
81 82 8.129211 TGTTACTTTTCTTCTTTTGCTTAGCTC 58.871 33.333 5.60 0.00 0.00 4.09
82 83 6.951062 ACTTTTCTTCTTTTGCTTAGCTCT 57.049 33.333 5.60 0.00 0.00 4.09
83 84 6.964908 ACTTTTCTTCTTTTGCTTAGCTCTC 58.035 36.000 5.60 0.00 0.00 3.20
84 85 6.543831 ACTTTTCTTCTTTTGCTTAGCTCTCA 59.456 34.615 5.60 0.00 0.00 3.27
85 86 7.230309 ACTTTTCTTCTTTTGCTTAGCTCTCAT 59.770 33.333 5.60 0.00 0.00 2.90
86 87 8.621532 TTTTCTTCTTTTGCTTAGCTCTCATA 57.378 30.769 5.60 0.00 0.00 2.15
87 88 7.840342 TTCTTCTTTTGCTTAGCTCTCATAG 57.160 36.000 5.60 0.00 0.00 2.23
97 98 2.415697 GCTCTCATAGCCGAAGAGAC 57.584 55.000 2.91 0.00 46.25 3.36
98 99 1.000717 GCTCTCATAGCCGAAGAGACC 60.001 57.143 2.91 0.00 46.25 3.85
99 100 1.265635 CTCTCATAGCCGAAGAGACCG 59.734 57.143 0.00 0.00 34.86 4.79
110 111 2.973899 GAGACCGGCTCTTCTGCA 59.026 61.111 15.90 0.00 40.61 4.41
111 112 1.153667 GAGACCGGCTCTTCTGCAG 60.154 63.158 7.63 7.63 40.61 4.41
114 115 4.093291 CCGGCTCTTCTGCAGGCT 62.093 66.667 15.13 0.00 40.96 4.58
115 116 2.725312 CCGGCTCTTCTGCAGGCTA 61.725 63.158 15.13 0.00 40.96 3.93
116 117 1.520342 CGGCTCTTCTGCAGGCTAC 60.520 63.158 15.13 0.00 34.27 3.58
117 118 1.599047 GGCTCTTCTGCAGGCTACA 59.401 57.895 15.13 0.00 33.64 2.74
118 119 0.742635 GGCTCTTCTGCAGGCTACAC 60.743 60.000 15.13 0.00 33.64 2.90
119 120 0.742635 GCTCTTCTGCAGGCTACACC 60.743 60.000 15.13 0.00 39.61 4.16
128 129 2.269241 GGCTACACCTCCACCTGC 59.731 66.667 0.00 0.00 34.51 4.85
129 130 2.125512 GCTACACCTCCACCTGCG 60.126 66.667 0.00 0.00 0.00 5.18
130 131 2.646175 GCTACACCTCCACCTGCGA 61.646 63.158 0.00 0.00 0.00 5.10
131 132 1.513158 CTACACCTCCACCTGCGAG 59.487 63.158 0.00 0.00 0.00 5.03
135 136 2.759973 CCTCCACCTGCGAGGCTA 60.760 66.667 0.00 0.00 40.55 3.93
136 137 2.136878 CCTCCACCTGCGAGGCTAT 61.137 63.158 0.00 0.00 40.55 2.97
137 138 0.827925 CCTCCACCTGCGAGGCTATA 60.828 60.000 0.00 0.00 40.55 1.31
138 139 0.315568 CTCCACCTGCGAGGCTATAC 59.684 60.000 0.00 0.00 39.63 1.47
139 140 1.113517 TCCACCTGCGAGGCTATACC 61.114 60.000 0.00 0.00 39.63 2.73
153 154 5.608676 GGCTATACCTTTTTATCCGAAGC 57.391 43.478 0.00 0.00 34.51 3.86
154 155 5.306394 GGCTATACCTTTTTATCCGAAGCT 58.694 41.667 0.00 0.00 34.51 3.74
155 156 6.461640 GGCTATACCTTTTTATCCGAAGCTA 58.538 40.000 0.00 0.00 34.51 3.32
156 157 6.590677 GGCTATACCTTTTTATCCGAAGCTAG 59.409 42.308 0.00 0.00 34.51 3.42
157 158 6.091034 GCTATACCTTTTTATCCGAAGCTAGC 59.909 42.308 6.62 6.62 0.00 3.42
158 159 4.489306 ACCTTTTTATCCGAAGCTAGCT 57.511 40.909 12.68 12.68 0.00 3.32
159 160 4.443621 ACCTTTTTATCCGAAGCTAGCTC 58.556 43.478 19.65 10.69 0.00 4.09
160 161 3.810386 CCTTTTTATCCGAAGCTAGCTCC 59.190 47.826 19.65 3.56 0.00 4.70
161 162 2.795175 TTTATCCGAAGCTAGCTCCG 57.205 50.000 17.39 17.39 0.00 4.63
162 163 1.977056 TTATCCGAAGCTAGCTCCGA 58.023 50.000 26.10 16.78 0.00 4.55
163 164 1.977056 TATCCGAAGCTAGCTCCGAA 58.023 50.000 26.10 4.19 0.00 4.30
164 165 0.386113 ATCCGAAGCTAGCTCCGAAC 59.614 55.000 26.10 9.86 0.00 3.95
165 166 1.227002 CCGAAGCTAGCTCCGAACC 60.227 63.158 26.10 6.09 0.00 3.62
166 167 1.668101 CCGAAGCTAGCTCCGAACCT 61.668 60.000 26.10 3.30 0.00 3.50
167 168 1.022735 CGAAGCTAGCTCCGAACCTA 58.977 55.000 19.68 0.00 0.00 3.08
168 169 1.002251 CGAAGCTAGCTCCGAACCTAG 60.002 57.143 19.68 0.00 35.31 3.02
169 170 1.338655 GAAGCTAGCTCCGAACCTAGG 59.661 57.143 19.65 7.41 33.34 3.02
170 171 0.259356 AGCTAGCTCCGAACCTAGGT 59.741 55.000 12.68 9.21 37.51 3.08
171 172 0.386113 GCTAGCTCCGAACCTAGGTG 59.614 60.000 17.14 3.36 33.34 4.00
172 173 1.033574 CTAGCTCCGAACCTAGGTGG 58.966 60.000 17.14 13.81 42.93 4.61
173 174 0.627451 TAGCTCCGAACCTAGGTGGA 59.373 55.000 17.14 17.54 39.71 4.02
174 175 0.971447 AGCTCCGAACCTAGGTGGAC 60.971 60.000 17.14 12.69 39.71 4.02
175 176 0.971447 GCTCCGAACCTAGGTGGACT 60.971 60.000 17.14 0.00 39.71 3.85
176 177 1.558233 CTCCGAACCTAGGTGGACTT 58.442 55.000 17.14 0.00 39.71 3.01
177 178 1.204941 CTCCGAACCTAGGTGGACTTG 59.795 57.143 17.14 3.16 39.71 3.16
178 179 0.391263 CCGAACCTAGGTGGACTTGC 60.391 60.000 17.14 0.00 39.71 4.01
179 180 0.736325 CGAACCTAGGTGGACTTGCG 60.736 60.000 17.14 7.21 39.71 4.85
180 181 0.391263 GAACCTAGGTGGACTTGCGG 60.391 60.000 17.14 0.00 39.71 5.69
181 182 1.838073 AACCTAGGTGGACTTGCGGG 61.838 60.000 17.14 0.00 39.71 6.13
182 183 2.584608 CTAGGTGGACTTGCGGGG 59.415 66.667 0.00 0.00 0.00 5.73
183 184 3.682292 CTAGGTGGACTTGCGGGGC 62.682 68.421 0.00 0.00 0.00 5.80
185 186 4.740822 GGTGGACTTGCGGGGCAT 62.741 66.667 0.00 0.00 38.76 4.40
186 187 3.134127 GTGGACTTGCGGGGCATC 61.134 66.667 0.00 0.00 38.76 3.91
187 188 3.645660 TGGACTTGCGGGGCATCA 61.646 61.111 0.00 0.00 38.76 3.07
188 189 2.825836 GGACTTGCGGGGCATCAG 60.826 66.667 0.00 0.00 38.76 2.90
189 190 2.045926 GACTTGCGGGGCATCAGT 60.046 61.111 0.00 0.00 38.76 3.41
190 191 1.675641 GACTTGCGGGGCATCAGTT 60.676 57.895 0.00 0.00 38.76 3.16
191 192 1.228552 ACTTGCGGGGCATCAGTTT 60.229 52.632 0.00 0.00 38.76 2.66
192 193 1.213537 CTTGCGGGGCATCAGTTTG 59.786 57.895 0.00 0.00 38.76 2.93
193 194 1.228398 TTGCGGGGCATCAGTTTGA 60.228 52.632 0.00 0.00 38.76 2.69
194 195 0.825425 TTGCGGGGCATCAGTTTGAA 60.825 50.000 0.00 0.00 38.76 2.69
195 196 1.243342 TGCGGGGCATCAGTTTGAAG 61.243 55.000 0.00 0.00 31.71 3.02
196 197 1.508088 CGGGGCATCAGTTTGAAGC 59.492 57.895 0.00 0.00 40.06 3.86
197 198 0.962356 CGGGGCATCAGTTTGAAGCT 60.962 55.000 6.29 0.00 40.56 3.74
198 199 1.678728 CGGGGCATCAGTTTGAAGCTA 60.679 52.381 6.29 0.00 40.56 3.32
199 200 2.659428 GGGGCATCAGTTTGAAGCTAT 58.341 47.619 6.29 0.00 40.56 2.97
200 201 2.620585 GGGGCATCAGTTTGAAGCTATC 59.379 50.000 6.29 0.00 40.56 2.08
201 202 2.620585 GGGCATCAGTTTGAAGCTATCC 59.379 50.000 6.29 0.00 40.56 2.59
202 203 3.282021 GGCATCAGTTTGAAGCTATCCA 58.718 45.455 6.29 0.00 40.56 3.41
203 204 3.887716 GGCATCAGTTTGAAGCTATCCAT 59.112 43.478 6.29 0.00 40.56 3.41
204 205 4.340381 GGCATCAGTTTGAAGCTATCCATT 59.660 41.667 6.29 0.00 40.56 3.16
205 206 5.279384 GCATCAGTTTGAAGCTATCCATTG 58.721 41.667 0.00 0.00 38.01 2.82
206 207 5.735354 GCATCAGTTTGAAGCTATCCATTGG 60.735 44.000 0.00 0.00 38.01 3.16
207 208 3.696051 TCAGTTTGAAGCTATCCATTGGC 59.304 43.478 0.00 0.00 0.00 4.52
208 209 3.026694 AGTTTGAAGCTATCCATTGGCC 58.973 45.455 0.00 0.00 0.00 5.36
209 210 2.760092 GTTTGAAGCTATCCATTGGCCA 59.240 45.455 0.00 0.00 0.00 5.36
210 211 3.317455 TTGAAGCTATCCATTGGCCAT 57.683 42.857 6.09 0.00 0.00 4.40
211 212 2.589720 TGAAGCTATCCATTGGCCATG 58.410 47.619 6.09 7.26 0.00 3.66
212 213 1.271656 GAAGCTATCCATTGGCCATGC 59.728 52.381 6.09 2.83 0.00 4.06
286 287 7.908601 CCTTTAGTCGTTATAACCAGATTTTGC 59.091 37.037 10.01 0.00 0.00 3.68
293 294 6.239008 CGTTATAACCAGATTTTGCCATCCAT 60.239 38.462 10.01 0.00 0.00 3.41
332 333 2.105128 CATCAGGAGCGGACGACC 59.895 66.667 0.00 0.00 0.00 4.79
345 346 2.125673 CGACCGGAGATGCGGTTT 60.126 61.111 19.63 0.00 38.78 3.27
347 348 1.079405 GACCGGAGATGCGGTTTGA 60.079 57.895 19.63 0.00 38.78 2.69
349 350 1.079127 CCGGAGATGCGGTTTGAGT 60.079 57.895 4.42 0.00 0.00 3.41
363 364 6.535150 TGCGGTTTGAGTTAAGAATATCTGAG 59.465 38.462 0.00 0.00 0.00 3.35
368 369 5.284864 TGAGTTAAGAATATCTGAGCGCAG 58.715 41.667 11.47 11.71 43.67 5.18
393 408 4.018960 AGGAAAGCTGGAGCAAGAGATAAA 60.019 41.667 0.65 0.00 45.16 1.40
394 409 4.702131 GGAAAGCTGGAGCAAGAGATAAAA 59.298 41.667 0.65 0.00 45.16 1.52
517 534 4.632974 GCCCGGAGCCAGCCATAG 62.633 72.222 0.73 0.00 34.35 2.23
519 536 4.632974 CCGGAGCCAGCCATAGCC 62.633 72.222 0.00 0.00 41.25 3.93
520 537 3.865383 CGGAGCCAGCCATAGCCA 61.865 66.667 0.00 0.00 41.25 4.75
521 538 2.112718 GGAGCCAGCCATAGCCAG 59.887 66.667 0.00 0.00 41.25 4.85
522 539 2.594013 GAGCCAGCCATAGCCAGC 60.594 66.667 0.00 0.00 41.25 4.85
523 540 4.201122 AGCCAGCCATAGCCAGCC 62.201 66.667 0.00 0.00 41.25 4.85
525 542 3.812544 CCAGCCATAGCCAGCCCA 61.813 66.667 0.00 0.00 41.25 5.36
526 543 2.276409 CAGCCATAGCCAGCCCAA 59.724 61.111 0.00 0.00 41.25 4.12
527 544 1.826921 CAGCCATAGCCAGCCCAAG 60.827 63.158 0.00 0.00 41.25 3.61
528 545 2.002977 AGCCATAGCCAGCCCAAGA 61.003 57.895 0.00 0.00 41.25 3.02
529 546 1.152368 GCCATAGCCAGCCCAAGAT 59.848 57.895 0.00 0.00 0.00 2.40
530 547 0.892814 GCCATAGCCAGCCCAAGATC 60.893 60.000 0.00 0.00 0.00 2.75
531 548 0.769873 CCATAGCCAGCCCAAGATCT 59.230 55.000 0.00 0.00 0.00 2.75
532 549 1.271271 CCATAGCCAGCCCAAGATCTC 60.271 57.143 0.00 0.00 0.00 2.75
533 550 1.063183 ATAGCCAGCCCAAGATCTCC 58.937 55.000 0.00 0.00 0.00 3.71
534 551 1.056700 TAGCCAGCCCAAGATCTCCC 61.057 60.000 0.00 0.00 0.00 4.30
535 552 2.922234 CCAGCCCAAGATCTCCCC 59.078 66.667 0.00 0.00 0.00 4.81
536 553 2.002977 CCAGCCCAAGATCTCCCCA 61.003 63.158 0.00 0.00 0.00 4.96
537 554 1.530771 CAGCCCAAGATCTCCCCAG 59.469 63.158 0.00 0.00 0.00 4.45
538 555 1.695597 AGCCCAAGATCTCCCCAGG 60.696 63.158 0.00 0.00 0.00 4.45
539 556 2.922234 CCCAAGATCTCCCCAGGC 59.078 66.667 0.00 0.00 0.00 4.85
540 557 2.002977 CCCAAGATCTCCCCAGGCA 61.003 63.158 0.00 0.00 0.00 4.75
541 558 1.530771 CCAAGATCTCCCCAGGCAG 59.469 63.158 0.00 0.00 0.00 4.85
572 589 1.675801 CACCTGCTTGCCAGAGAGA 59.324 57.895 0.00 0.00 44.64 3.10
639 661 5.865085 TCTTCCGAGGGGTGATAAATAATG 58.135 41.667 0.00 0.00 33.83 1.90
723 755 1.237285 CGCTGGGTTTCAACAGAGGG 61.237 60.000 0.00 0.00 36.86 4.30
840 879 1.522580 GCGGCAACCCAAAGCAAAA 60.523 52.632 0.00 0.00 0.00 2.44
943 994 7.216494 AGGTTTTCTTCTCTTCTCTTCTCTTG 58.784 38.462 0.00 0.00 0.00 3.02
964 1025 4.351054 CGCCAGCCAGGGAGGTTT 62.351 66.667 0.00 0.00 40.61 3.27
965 1026 2.361737 GCCAGCCAGGGAGGTTTC 60.362 66.667 0.00 0.00 40.61 2.78
966 1027 2.356667 CCAGCCAGGGAGGTTTCC 59.643 66.667 0.00 0.00 43.23 3.13
974 1035 4.772687 GGAGGTTTCCCGTCCCGC 62.773 72.222 0.00 0.00 37.53 6.13
975 1036 4.772687 GAGGTTTCCCGTCCCGCC 62.773 72.222 0.00 0.00 35.12 6.13
1107 1170 1.737201 CCGTTTCGCCCTGGTTTTT 59.263 52.632 0.00 0.00 0.00 1.94
1146 1209 3.067742 TCCGGTTCTTATGGATCTCGTTC 59.932 47.826 0.00 0.00 0.00 3.95
1153 1238 1.107114 ATGGATCTCGTTCTGCGTCT 58.893 50.000 0.00 0.00 42.13 4.18
1297 1382 1.688197 CAAGTGGCAGGTGAATTTGGT 59.312 47.619 0.00 0.00 0.00 3.67
1309 1394 0.883833 AATTTGGTTCCTCGCTGCTG 59.116 50.000 0.00 0.00 0.00 4.41
1314 1401 2.999648 TTCCTCGCTGCTGCTCCT 61.000 61.111 14.03 0.00 36.97 3.69
1326 1413 1.139256 GCTGCTCCTCTTACCTTACCC 59.861 57.143 0.00 0.00 0.00 3.69
1345 1432 4.662961 TCGTGTCGCAGCTGTGGG 62.663 66.667 26.23 13.50 37.98 4.61
1366 1453 3.983494 ATCCGCTCGCCTGGATCG 61.983 66.667 0.00 0.00 41.08 3.69
1387 1474 2.435059 GCGTCCTCTGGTTCTGCC 60.435 66.667 0.00 0.00 37.90 4.85
1407 1494 4.076394 GCCTGGGTTGTTAGATTTGTACA 58.924 43.478 0.00 0.00 0.00 2.90
1412 1499 7.209471 TGGGTTGTTAGATTTGTACAATCAC 57.791 36.000 9.56 4.30 35.19 3.06
1429 1516 3.755112 TCACGGTCAATTGGTGAAGTA 57.245 42.857 12.00 0.00 38.23 2.24
1430 1517 3.395639 TCACGGTCAATTGGTGAAGTAC 58.604 45.455 12.00 0.00 38.23 2.73
1434 1521 4.282703 ACGGTCAATTGGTGAAGTACTACT 59.717 41.667 5.42 0.00 38.23 2.57
1447 1534 4.982241 AGTACTACTTGGCATGGCATAT 57.018 40.909 23.96 16.09 0.00 1.78
1449 1536 6.627087 AGTACTACTTGGCATGGCATATAT 57.373 37.500 23.96 11.08 0.00 0.86
1466 1553 7.134815 GGCATATATGTTGACTGTTCATGAAC 58.865 38.462 28.10 28.10 41.50 3.18
1514 1604 6.396450 ACGTACAGTAGGATTTCTTTCCTTC 58.604 40.000 7.29 0.00 43.88 3.46
1567 1726 6.910536 ACTGCTTAGACTGCATTTATGTAC 57.089 37.500 0.00 0.00 39.86 2.90
1575 1734 3.381272 ACTGCATTTATGTACATGTGGGC 59.619 43.478 18.81 15.88 0.00 5.36
1584 1743 2.498078 TGTACATGTGGGCGTGATTAGA 59.502 45.455 9.11 0.00 35.65 2.10
1585 1744 2.024176 ACATGTGGGCGTGATTAGAC 57.976 50.000 0.00 0.00 35.65 2.59
1586 1745 0.930310 CATGTGGGCGTGATTAGACG 59.070 55.000 0.00 0.00 42.42 4.18
1615 1775 6.347859 AGTTATGTAAAATTGCCCCGAAAA 57.652 33.333 0.00 0.00 0.00 2.29
1616 1776 6.941857 AGTTATGTAAAATTGCCCCGAAAAT 58.058 32.000 0.00 0.00 0.00 1.82
1617 1777 8.068892 AGTTATGTAAAATTGCCCCGAAAATA 57.931 30.769 0.00 0.00 0.00 1.40
1619 1779 8.974408 GTTATGTAAAATTGCCCCGAAAATATC 58.026 33.333 0.00 0.00 0.00 1.63
1690 1850 8.642020 GTTTATTTGTGCTTTTAGCTTGATGAG 58.358 33.333 0.00 0.00 42.97 2.90
1717 1877 4.122776 AGCGAGCAATTAGATCAAACGAT 58.877 39.130 0.00 0.00 31.47 3.73
1724 1884 6.037610 AGCAATTAGATCAAACGATGAGGTTC 59.962 38.462 0.00 0.00 42.53 3.62
1744 1904 1.757118 CTCTCGGCAGGAAAGGATACA 59.243 52.381 0.00 0.00 41.41 2.29
1747 1907 1.209504 TCGGCAGGAAAGGATACAAGG 59.790 52.381 0.00 0.00 41.41 3.61
1879 2039 0.397675 TGGATGAGAGTGAGCGGGAT 60.398 55.000 0.00 0.00 0.00 3.85
1904 2064 0.302890 CGCGGCTTTCTTATCTGCAG 59.697 55.000 7.63 7.63 32.64 4.41
1905 2065 0.659957 GCGGCTTTCTTATCTGCAGG 59.340 55.000 15.13 0.00 32.64 4.85
1933 2093 7.148340 CCTCCTCAACATCAAGATAAAGTTGTC 60.148 40.741 0.00 0.00 40.19 3.18
2206 2366 5.010922 ACCTTTGCTGAATATTGTCAAAGCA 59.989 36.000 18.71 5.04 41.10 3.91
2379 2539 3.758023 TGGTGCTAACATCCATTGTTCAG 59.242 43.478 0.00 0.00 45.55 3.02
2438 2598 8.902806 CCTTATATTGCCATTCTTTGTTGTAGA 58.097 33.333 0.00 0.00 0.00 2.59
2756 2917 8.024865 TGCTGTGCATAATCATAATTATTCTGC 58.975 33.333 0.00 0.00 36.18 4.26
2788 2949 2.088423 TGCGCCCTAAGTTGGTATTTG 58.912 47.619 4.18 0.00 0.00 2.32
2932 3095 6.694877 AAGTGATGACTTGATCCAATCATG 57.305 37.500 0.00 0.00 41.12 3.07
2940 3128 6.660094 TGACTTGATCCAATCATGTTCAATGA 59.340 34.615 9.11 0.00 44.59 2.57
3037 3225 1.077501 CATGGGCTCGTGATTGGGT 60.078 57.895 0.00 0.00 31.73 4.51
3039 3227 0.916086 ATGGGCTCGTGATTGGGTTA 59.084 50.000 0.00 0.00 0.00 2.85
3040 3228 0.251916 TGGGCTCGTGATTGGGTTAG 59.748 55.000 0.00 0.00 0.00 2.34
3153 3344 7.331687 GGTAATCCACATTGAAACAAATGAAGG 59.668 37.037 4.04 5.64 39.46 3.46
3176 3367 2.292267 GATCGTGGAGCAATTCACCAT 58.708 47.619 0.00 0.00 37.75 3.55
3179 3370 0.174162 GTGGAGCAATTCACCATGCC 59.826 55.000 0.00 0.00 43.57 4.40
3297 3488 2.297033 CCAGTTGGCTTGTGCTTAATGT 59.703 45.455 0.00 0.00 39.59 2.71
3404 3600 1.934463 GGTGATTGTGCTATCGCCG 59.066 57.895 9.63 0.00 43.20 6.46
3532 3728 3.450904 AGAGGCTGGAATAGTTGTACCA 58.549 45.455 0.00 0.00 0.00 3.25
3642 3838 5.695851 AGTTCAAATTTCACAGGTGCTAG 57.304 39.130 0.00 0.00 0.00 3.42
3757 3956 0.468226 GATTATCCACGGGTGCCTCA 59.532 55.000 0.00 0.00 0.00 3.86
3759 3958 1.796017 TTATCCACGGGTGCCTCATA 58.204 50.000 0.00 0.00 0.00 2.15
3763 3962 0.107214 CCACGGGTGCCTCATATTGT 60.107 55.000 0.00 0.00 0.00 2.71
3764 3963 1.016627 CACGGGTGCCTCATATTGTG 58.983 55.000 0.00 0.00 0.00 3.33
3790 3999 6.260936 ACCTGTTGACTGAGTTAACTGAATTG 59.739 38.462 22.44 11.82 34.65 2.32
3796 4005 7.148641 TGACTGAGTTAACTGAATTGTCTCTC 58.851 38.462 14.14 0.00 0.00 3.20
3797 4006 7.014711 TGACTGAGTTAACTGAATTGTCTCTCT 59.985 37.037 14.14 0.00 0.00 3.10
3798 4007 7.731054 ACTGAGTTAACTGAATTGTCTCTCTT 58.269 34.615 14.14 0.00 0.00 2.85
3799 4008 7.655328 ACTGAGTTAACTGAATTGTCTCTCTTG 59.345 37.037 14.14 0.00 0.00 3.02
3800 4009 6.931281 TGAGTTAACTGAATTGTCTCTCTTGG 59.069 38.462 14.14 0.00 0.00 3.61
3807 4016 6.541641 ACTGAATTGTCTCTCTTGGCATATTC 59.458 38.462 0.00 0.00 0.00 1.75
3894 4107 1.761449 TGCAGTCAAGCACCTCAAAA 58.239 45.000 0.00 0.00 40.11 2.44
3896 4109 2.159254 TGCAGTCAAGCACCTCAAAAAC 60.159 45.455 0.00 0.00 40.11 2.43
3898 4111 3.675775 GCAGTCAAGCACCTCAAAAACAA 60.676 43.478 0.00 0.00 0.00 2.83
3955 4168 8.648968 GCGCCTAGATTTCTTAGATATTGTTAC 58.351 37.037 0.00 0.00 0.00 2.50
3956 4169 8.851416 CGCCTAGATTTCTTAGATATTGTTACG 58.149 37.037 0.00 0.00 0.00 3.18
3985 4200 5.350365 TGTCGTGCTATTTGGTAGACAATTC 59.650 40.000 0.00 0.00 39.21 2.17
4006 4221 8.398665 CAATTCTACTTACTGAAACCCAATAGC 58.601 37.037 0.00 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.115414 AGAGAGAGGGAAAGAAAAATGGTATG 58.885 38.462 0.00 0.00 0.00 2.39
1 2 7.277405 AGAGAGAGGGAAAGAAAAATGGTAT 57.723 36.000 0.00 0.00 0.00 2.73
2 3 6.704056 AGAGAGAGGGAAAGAAAAATGGTA 57.296 37.500 0.00 0.00 0.00 3.25
3 4 5.590976 AGAGAGAGGGAAAGAAAAATGGT 57.409 39.130 0.00 0.00 0.00 3.55
4 5 7.572814 AGATAGAGAGAGGGAAAGAAAAATGG 58.427 38.462 0.00 0.00 0.00 3.16
5 6 8.485392 AGAGATAGAGAGAGGGAAAGAAAAATG 58.515 37.037 0.00 0.00 0.00 2.32
6 7 8.622572 AGAGATAGAGAGAGGGAAAGAAAAAT 57.377 34.615 0.00 0.00 0.00 1.82
7 8 7.898636 AGAGAGATAGAGAGAGGGAAAGAAAAA 59.101 37.037 0.00 0.00 0.00 1.94
8 9 7.418378 AGAGAGATAGAGAGAGGGAAAGAAAA 58.582 38.462 0.00 0.00 0.00 2.29
9 10 6.980577 AGAGAGATAGAGAGAGGGAAAGAAA 58.019 40.000 0.00 0.00 0.00 2.52
10 11 6.410388 GGAGAGAGATAGAGAGAGGGAAAGAA 60.410 46.154 0.00 0.00 0.00 2.52
11 12 5.073144 GGAGAGAGATAGAGAGAGGGAAAGA 59.927 48.000 0.00 0.00 0.00 2.52
12 13 5.073691 AGGAGAGAGATAGAGAGAGGGAAAG 59.926 48.000 0.00 0.00 0.00 2.62
13 14 4.981647 AGGAGAGAGATAGAGAGAGGGAAA 59.018 45.833 0.00 0.00 0.00 3.13
14 15 4.577096 AGGAGAGAGATAGAGAGAGGGAA 58.423 47.826 0.00 0.00 0.00 3.97
15 16 4.168101 GAGGAGAGAGATAGAGAGAGGGA 58.832 52.174 0.00 0.00 0.00 4.20
16 17 3.055819 CGAGGAGAGAGATAGAGAGAGGG 60.056 56.522 0.00 0.00 0.00 4.30
17 18 3.617531 GCGAGGAGAGAGATAGAGAGAGG 60.618 56.522 0.00 0.00 0.00 3.69
18 19 3.006859 TGCGAGGAGAGAGATAGAGAGAG 59.993 52.174 0.00 0.00 0.00 3.20
19 20 2.969262 TGCGAGGAGAGAGATAGAGAGA 59.031 50.000 0.00 0.00 0.00 3.10
20 21 3.401033 TGCGAGGAGAGAGATAGAGAG 57.599 52.381 0.00 0.00 0.00 3.20
21 22 3.673902 CATGCGAGGAGAGAGATAGAGA 58.326 50.000 0.00 0.00 0.00 3.10
22 23 2.162208 GCATGCGAGGAGAGAGATAGAG 59.838 54.545 0.00 0.00 0.00 2.43
23 24 2.158559 GCATGCGAGGAGAGAGATAGA 58.841 52.381 0.00 0.00 0.00 1.98
24 25 1.885233 TGCATGCGAGGAGAGAGATAG 59.115 52.381 14.09 0.00 0.00 2.08
25 26 1.986882 TGCATGCGAGGAGAGAGATA 58.013 50.000 14.09 0.00 0.00 1.98
26 27 1.273048 GATGCATGCGAGGAGAGAGAT 59.727 52.381 14.09 0.00 0.00 2.75
27 28 0.672889 GATGCATGCGAGGAGAGAGA 59.327 55.000 14.09 0.00 0.00 3.10
28 29 0.388294 TGATGCATGCGAGGAGAGAG 59.612 55.000 14.09 0.00 0.00 3.20
29 30 0.103755 GTGATGCATGCGAGGAGAGA 59.896 55.000 14.09 0.00 0.00 3.10
30 31 1.213733 CGTGATGCATGCGAGGAGAG 61.214 60.000 14.09 0.00 0.00 3.20
31 32 1.227060 CGTGATGCATGCGAGGAGA 60.227 57.895 14.09 0.00 0.00 3.71
32 33 2.242572 CCGTGATGCATGCGAGGAG 61.243 63.158 14.09 4.27 0.00 3.69
33 34 2.202919 CCGTGATGCATGCGAGGA 60.203 61.111 14.09 0.00 0.00 3.71
34 35 2.108514 AACCGTGATGCATGCGAGG 61.109 57.895 14.09 13.37 0.00 4.63
35 36 1.061411 CAACCGTGATGCATGCGAG 59.939 57.895 14.09 12.09 0.00 5.03
36 37 3.037992 GCAACCGTGATGCATGCGA 62.038 57.895 14.09 2.48 43.29 5.10
37 38 2.577644 GCAACCGTGATGCATGCG 60.578 61.111 14.09 8.70 43.29 4.73
38 39 1.515519 CAGCAACCGTGATGCATGC 60.516 57.895 11.82 11.82 46.22 4.06
39 40 0.241749 AACAGCAACCGTGATGCATG 59.758 50.000 2.46 0.00 45.32 4.06
40 41 1.468520 GTAACAGCAACCGTGATGCAT 59.531 47.619 0.00 0.00 45.32 3.96
41 42 0.871722 GTAACAGCAACCGTGATGCA 59.128 50.000 8.40 0.00 45.32 3.96
42 43 1.156736 AGTAACAGCAACCGTGATGC 58.843 50.000 0.00 0.00 45.32 3.91
43 44 3.896648 AAAGTAACAGCAACCGTGATG 57.103 42.857 0.00 0.00 46.85 3.07
44 45 4.134563 AGAAAAGTAACAGCAACCGTGAT 58.865 39.130 0.00 0.00 0.00 3.06
45 46 3.537580 AGAAAAGTAACAGCAACCGTGA 58.462 40.909 0.00 0.00 0.00 4.35
46 47 3.963383 AGAAAAGTAACAGCAACCGTG 57.037 42.857 0.00 0.00 0.00 4.94
47 48 4.196971 AGAAGAAAAGTAACAGCAACCGT 58.803 39.130 0.00 0.00 0.00 4.83
48 49 4.813296 AGAAGAAAAGTAACAGCAACCG 57.187 40.909 0.00 0.00 0.00 4.44
49 50 6.237835 GCAAAAGAAGAAAAGTAACAGCAACC 60.238 38.462 0.00 0.00 0.00 3.77
50 51 6.531594 AGCAAAAGAAGAAAAGTAACAGCAAC 59.468 34.615 0.00 0.00 0.00 4.17
51 52 6.630071 AGCAAAAGAAGAAAAGTAACAGCAA 58.370 32.000 0.00 0.00 0.00 3.91
52 53 6.207691 AGCAAAAGAAGAAAAGTAACAGCA 57.792 33.333 0.00 0.00 0.00 4.41
53 54 7.096436 GCTAAGCAAAAGAAGAAAAGTAACAGC 60.096 37.037 0.00 0.00 0.00 4.40
54 55 8.131731 AGCTAAGCAAAAGAAGAAAAGTAACAG 58.868 33.333 0.00 0.00 0.00 3.16
55 56 7.996385 AGCTAAGCAAAAGAAGAAAAGTAACA 58.004 30.769 0.00 0.00 0.00 2.41
56 57 8.346300 AGAGCTAAGCAAAAGAAGAAAAGTAAC 58.654 33.333 0.00 0.00 0.00 2.50
57 58 8.451908 AGAGCTAAGCAAAAGAAGAAAAGTAA 57.548 30.769 0.00 0.00 0.00 2.24
58 59 7.715249 TGAGAGCTAAGCAAAAGAAGAAAAGTA 59.285 33.333 0.00 0.00 0.00 2.24
59 60 6.543831 TGAGAGCTAAGCAAAAGAAGAAAAGT 59.456 34.615 0.00 0.00 0.00 2.66
60 61 6.963796 TGAGAGCTAAGCAAAAGAAGAAAAG 58.036 36.000 0.00 0.00 0.00 2.27
61 62 6.942532 TGAGAGCTAAGCAAAAGAAGAAAA 57.057 33.333 0.00 0.00 0.00 2.29
62 63 8.261492 CTATGAGAGCTAAGCAAAAGAAGAAA 57.739 34.615 0.00 0.00 0.00 2.52
63 64 7.840342 CTATGAGAGCTAAGCAAAAGAAGAA 57.160 36.000 0.00 0.00 0.00 2.52
79 80 1.265635 CGGTCTCTTCGGCTATGAGAG 59.734 57.143 5.06 1.88 38.64 3.20
80 81 1.309950 CGGTCTCTTCGGCTATGAGA 58.690 55.000 1.12 1.12 36.36 3.27
81 82 0.312416 CCGGTCTCTTCGGCTATGAG 59.688 60.000 0.00 0.00 41.07 2.90
82 83 2.415825 CCGGTCTCTTCGGCTATGA 58.584 57.895 0.00 0.00 41.07 2.15
93 94 1.153667 CTGCAGAAGAGCCGGTCTC 60.154 63.158 8.42 15.53 42.21 3.36
94 95 2.654079 CCTGCAGAAGAGCCGGTCT 61.654 63.158 17.39 0.00 36.94 3.85
95 96 2.125350 CCTGCAGAAGAGCCGGTC 60.125 66.667 17.39 0.00 34.59 4.79
96 97 4.400961 GCCTGCAGAAGAGCCGGT 62.401 66.667 17.39 0.00 40.56 5.28
97 98 2.725312 TAGCCTGCAGAAGAGCCGG 61.725 63.158 17.39 0.00 41.28 6.13
98 99 1.520342 GTAGCCTGCAGAAGAGCCG 60.520 63.158 17.39 0.00 0.00 5.52
99 100 0.742635 GTGTAGCCTGCAGAAGAGCC 60.743 60.000 17.39 0.00 0.00 4.70
100 101 0.742635 GGTGTAGCCTGCAGAAGAGC 60.743 60.000 17.39 10.18 0.00 4.09
101 102 3.450028 GGTGTAGCCTGCAGAAGAG 57.550 57.895 17.39 0.00 0.00 2.85
111 112 2.269241 GCAGGTGGAGGTGTAGCC 59.731 66.667 0.00 0.00 37.58 3.93
112 113 2.125512 CGCAGGTGGAGGTGTAGC 60.126 66.667 0.00 0.00 0.00 3.58
113 114 1.513158 CTCGCAGGTGGAGGTGTAG 59.487 63.158 0.00 0.00 0.00 2.74
114 115 1.982395 CCTCGCAGGTGGAGGTGTA 60.982 63.158 0.00 0.00 44.92 2.90
115 116 3.314331 CCTCGCAGGTGGAGGTGT 61.314 66.667 0.00 0.00 44.92 4.16
119 120 0.315568 GTATAGCCTCGCAGGTGGAG 59.684 60.000 4.45 0.00 37.80 3.86
120 121 1.113517 GGTATAGCCTCGCAGGTGGA 61.114 60.000 4.45 0.00 37.80 4.02
121 122 1.115930 AGGTATAGCCTCGCAGGTGG 61.116 60.000 0.00 0.00 46.96 4.61
122 123 2.431023 AGGTATAGCCTCGCAGGTG 58.569 57.895 0.00 0.00 46.96 4.00
131 132 5.306394 AGCTTCGGATAAAAAGGTATAGCC 58.694 41.667 0.00 0.00 31.81 3.93
132 133 6.091034 GCTAGCTTCGGATAAAAAGGTATAGC 59.909 42.308 7.70 0.00 35.57 2.97
133 134 7.379750 AGCTAGCTTCGGATAAAAAGGTATAG 58.620 38.462 12.68 0.00 35.57 1.31
134 135 7.299246 AGCTAGCTTCGGATAAAAAGGTATA 57.701 36.000 12.68 0.00 35.57 1.47
135 136 6.176014 AGCTAGCTTCGGATAAAAAGGTAT 57.824 37.500 12.68 0.00 35.57 2.73
136 137 5.452917 GGAGCTAGCTTCGGATAAAAAGGTA 60.453 44.000 20.42 0.00 35.11 3.08
137 138 4.443621 GAGCTAGCTTCGGATAAAAAGGT 58.556 43.478 20.42 0.00 37.09 3.50
138 139 3.810386 GGAGCTAGCTTCGGATAAAAAGG 59.190 47.826 20.42 0.00 0.00 3.11
139 140 3.491267 CGGAGCTAGCTTCGGATAAAAAG 59.509 47.826 33.65 5.97 41.09 2.27
140 141 3.131577 TCGGAGCTAGCTTCGGATAAAAA 59.868 43.478 38.15 19.36 44.62 1.94
141 142 2.691526 TCGGAGCTAGCTTCGGATAAAA 59.308 45.455 38.15 20.06 44.62 1.52
142 143 2.304092 TCGGAGCTAGCTTCGGATAAA 58.696 47.619 38.15 20.76 44.62 1.40
143 144 1.977056 TCGGAGCTAGCTTCGGATAA 58.023 50.000 38.15 21.12 44.62 1.75
144 145 1.607628 GTTCGGAGCTAGCTTCGGATA 59.392 52.381 38.15 23.85 44.62 2.59
145 146 0.386113 GTTCGGAGCTAGCTTCGGAT 59.614 55.000 38.15 8.70 44.62 4.18
146 147 1.664321 GGTTCGGAGCTAGCTTCGGA 61.664 60.000 38.15 31.59 44.62 4.55
147 148 1.227002 GGTTCGGAGCTAGCTTCGG 60.227 63.158 38.15 23.06 44.62 4.30
148 149 1.002251 CTAGGTTCGGAGCTAGCTTCG 60.002 57.143 35.07 35.07 44.35 3.79
149 150 2.785713 CTAGGTTCGGAGCTAGCTTC 57.214 55.000 20.42 16.91 44.35 3.86
154 155 0.627451 TCCACCTAGGTTCGGAGCTA 59.373 55.000 13.15 1.99 39.02 3.32
155 156 0.971447 GTCCACCTAGGTTCGGAGCT 60.971 60.000 19.02 0.00 39.02 4.09
156 157 0.971447 AGTCCACCTAGGTTCGGAGC 60.971 60.000 19.02 14.07 39.02 4.70
157 158 1.204941 CAAGTCCACCTAGGTTCGGAG 59.795 57.143 19.02 5.31 39.02 4.63
158 159 1.263356 CAAGTCCACCTAGGTTCGGA 58.737 55.000 13.15 14.54 39.02 4.55
159 160 0.391263 GCAAGTCCACCTAGGTTCGG 60.391 60.000 13.15 12.11 39.02 4.30
160 161 0.736325 CGCAAGTCCACCTAGGTTCG 60.736 60.000 13.15 5.46 39.02 3.95
161 162 0.391263 CCGCAAGTCCACCTAGGTTC 60.391 60.000 13.15 6.04 39.02 3.62
162 163 1.677552 CCGCAAGTCCACCTAGGTT 59.322 57.895 13.15 0.00 39.02 3.50
163 164 2.291043 CCCGCAAGTCCACCTAGGT 61.291 63.158 9.21 9.21 39.02 3.08
164 165 2.584608 CCCGCAAGTCCACCTAGG 59.415 66.667 7.41 7.41 39.47 3.02
165 166 2.584608 CCCCGCAAGTCCACCTAG 59.415 66.667 0.00 0.00 0.00 3.02
166 167 3.712907 GCCCCGCAAGTCCACCTA 61.713 66.667 0.00 0.00 0.00 3.08
168 169 4.740822 ATGCCCCGCAAGTCCACC 62.741 66.667 0.00 0.00 43.62 4.61
169 170 3.134127 GATGCCCCGCAAGTCCAC 61.134 66.667 0.00 0.00 43.62 4.02
170 171 3.626996 CTGATGCCCCGCAAGTCCA 62.627 63.158 0.00 0.00 43.62 4.02
171 172 2.825836 CTGATGCCCCGCAAGTCC 60.826 66.667 0.00 0.00 43.62 3.85
172 173 1.244019 AAACTGATGCCCCGCAAGTC 61.244 55.000 0.00 0.00 43.62 3.01
173 174 1.228552 AAACTGATGCCCCGCAAGT 60.229 52.632 0.00 0.00 43.62 3.16
174 175 1.213537 CAAACTGATGCCCCGCAAG 59.786 57.895 0.00 0.00 43.62 4.01
175 176 0.825425 TTCAAACTGATGCCCCGCAA 60.825 50.000 0.00 0.00 43.62 4.85
176 177 1.228398 TTCAAACTGATGCCCCGCA 60.228 52.632 0.00 0.00 44.86 5.69
177 178 1.508088 CTTCAAACTGATGCCCCGC 59.492 57.895 0.00 0.00 0.00 6.13
178 179 0.962356 AGCTTCAAACTGATGCCCCG 60.962 55.000 10.03 0.00 45.37 5.73
179 180 2.128771 TAGCTTCAAACTGATGCCCC 57.871 50.000 10.03 0.00 45.37 5.80
180 181 2.620585 GGATAGCTTCAAACTGATGCCC 59.379 50.000 10.03 2.90 45.37 5.36
181 182 3.282021 TGGATAGCTTCAAACTGATGCC 58.718 45.455 10.03 0.00 45.37 4.40
182 183 5.279384 CAATGGATAGCTTCAAACTGATGC 58.721 41.667 0.00 6.45 44.81 3.91
183 184 5.735354 GCCAATGGATAGCTTCAAACTGATG 60.735 44.000 2.05 0.00 0.00 3.07
184 185 4.340381 GCCAATGGATAGCTTCAAACTGAT 59.660 41.667 2.05 0.00 0.00 2.90
185 186 3.696051 GCCAATGGATAGCTTCAAACTGA 59.304 43.478 2.05 0.00 0.00 3.41
186 187 3.181483 GGCCAATGGATAGCTTCAAACTG 60.181 47.826 2.05 0.00 0.00 3.16
187 188 3.026694 GGCCAATGGATAGCTTCAAACT 58.973 45.455 2.05 0.00 0.00 2.66
188 189 2.760092 TGGCCAATGGATAGCTTCAAAC 59.240 45.455 0.61 0.00 0.00 2.93
189 190 3.098774 TGGCCAATGGATAGCTTCAAA 57.901 42.857 0.61 0.00 0.00 2.69
190 191 2.824689 TGGCCAATGGATAGCTTCAA 57.175 45.000 0.61 0.00 0.00 2.69
191 192 2.589720 CATGGCCAATGGATAGCTTCA 58.410 47.619 10.96 0.00 32.10 3.02
192 193 1.271656 GCATGGCCAATGGATAGCTTC 59.728 52.381 10.96 0.00 36.71 3.86
193 194 1.335145 GCATGGCCAATGGATAGCTT 58.665 50.000 10.96 0.00 36.71 3.74
194 195 3.047039 GCATGGCCAATGGATAGCT 57.953 52.632 10.96 0.00 36.71 3.32
293 294 0.530211 CGTGACGGTTTACACACCCA 60.530 55.000 0.00 0.00 36.91 4.51
332 333 2.004583 TAACTCAAACCGCATCTCCG 57.995 50.000 0.00 0.00 0.00 4.63
337 338 7.047891 TCAGATATTCTTAACTCAAACCGCAT 58.952 34.615 0.00 0.00 0.00 4.73
341 342 6.510317 GCGCTCAGATATTCTTAACTCAAACC 60.510 42.308 0.00 0.00 0.00 3.27
345 346 5.262588 TGCGCTCAGATATTCTTAACTCA 57.737 39.130 9.73 0.00 0.00 3.41
347 348 4.054671 GCTGCGCTCAGATATTCTTAACT 58.945 43.478 8.15 0.00 42.95 2.24
349 350 4.053983 CTGCTGCGCTCAGATATTCTTAA 58.946 43.478 20.49 0.00 42.95 1.85
368 369 0.607489 TCTTGCTCCAGCTTTCCTGC 60.607 55.000 0.00 0.00 40.36 4.85
369 370 1.002888 TCTCTTGCTCCAGCTTTCCTG 59.997 52.381 0.00 0.00 42.66 3.86
393 408 1.668151 GTTCCGCGTCCTCTGCTTT 60.668 57.895 4.92 0.00 0.00 3.51
394 409 2.048127 GTTCCGCGTCCTCTGCTT 60.048 61.111 4.92 0.00 0.00 3.91
515 532 1.056700 GGGAGATCTTGGGCTGGCTA 61.057 60.000 0.00 0.00 0.00 3.93
517 534 2.194326 GGGAGATCTTGGGCTGGC 59.806 66.667 0.00 0.00 0.00 4.85
519 536 1.530771 CTGGGGAGATCTTGGGCTG 59.469 63.158 0.00 0.00 0.00 4.85
520 537 1.695597 CCTGGGGAGATCTTGGGCT 60.696 63.158 0.00 0.00 0.00 5.19
521 538 2.922234 CCTGGGGAGATCTTGGGC 59.078 66.667 0.00 0.00 0.00 5.36
522 539 1.992519 CTGCCTGGGGAGATCTTGGG 61.993 65.000 1.76 0.00 35.50 4.12
523 540 1.530771 CTGCCTGGGGAGATCTTGG 59.469 63.158 1.76 0.00 35.50 3.61
524 541 1.153005 GCTGCCTGGGGAGATCTTG 60.153 63.158 12.30 0.00 35.50 3.02
525 542 0.992431 ATGCTGCCTGGGGAGATCTT 60.992 55.000 12.30 0.00 35.50 2.40
526 543 1.385631 ATGCTGCCTGGGGAGATCT 60.386 57.895 12.30 0.00 35.50 2.75
527 544 1.072852 GATGCTGCCTGGGGAGATC 59.927 63.158 12.30 8.16 35.50 2.75
528 545 2.459086 GGATGCTGCCTGGGGAGAT 61.459 63.158 12.30 3.09 35.50 2.75
529 546 3.092511 GGATGCTGCCTGGGGAGA 61.093 66.667 12.30 0.00 35.50 3.71
530 547 3.414193 TGGATGCTGCCTGGGGAG 61.414 66.667 3.71 3.71 36.62 4.30
531 548 3.414193 CTGGATGCTGCCTGGGGA 61.414 66.667 0.00 0.00 0.00 4.81
532 549 2.693896 GATCTGGATGCTGCCTGGGG 62.694 65.000 0.00 0.00 0.00 4.96
533 550 1.228184 GATCTGGATGCTGCCTGGG 60.228 63.158 0.00 0.00 0.00 4.45
534 551 0.535328 CTGATCTGGATGCTGCCTGG 60.535 60.000 0.00 0.00 0.00 4.45
535 552 1.167155 GCTGATCTGGATGCTGCCTG 61.167 60.000 0.00 0.00 0.00 4.85
536 553 1.148723 GCTGATCTGGATGCTGCCT 59.851 57.895 0.00 0.00 0.00 4.75
537 554 1.153025 TGCTGATCTGGATGCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
538 555 1.445716 GGTGCTGATCTGGATGCTGC 61.446 60.000 1.46 0.00 0.00 5.25
539 556 0.180642 AGGTGCTGATCTGGATGCTG 59.819 55.000 1.46 0.00 0.00 4.41
540 557 0.180642 CAGGTGCTGATCTGGATGCT 59.819 55.000 1.46 0.00 32.44 3.79
541 558 1.445716 GCAGGTGCTGATCTGGATGC 61.446 60.000 4.42 4.42 38.21 3.91
564 581 1.079266 GTGCTGTGCCTCTCTCTGG 60.079 63.158 0.00 0.00 0.00 3.86
572 589 3.163832 TACACGCTGTGCTGTGCCT 62.164 57.895 8.31 1.22 36.98 4.75
617 639 5.621193 ACATTATTTATCACCCCTCGGAAG 58.379 41.667 0.00 0.00 0.00 3.46
646 668 7.617329 TGAACATCCAACATTATTTATCACCCA 59.383 33.333 0.00 0.00 0.00 4.51
653 678 9.460019 TCACATCTGAACATCCAACATTATTTA 57.540 29.630 0.00 0.00 0.00 1.40
768 803 4.217550 GGGCTGCGGCTATTTATTGATTAA 59.782 41.667 18.85 0.00 38.73 1.40
840 879 1.406751 GCCTTGGGTTTGTTTGTTGCT 60.407 47.619 0.00 0.00 0.00 3.91
888 927 0.609406 GGTGGGTGGGAAAGAGAAGC 60.609 60.000 0.00 0.00 0.00 3.86
914 965 7.342581 AGAAGAGAAGAGAAGAAAACCTTTGT 58.657 34.615 0.00 0.00 34.68 2.83
921 972 8.017418 AGACAAGAGAAGAGAAGAGAAGAAAA 57.983 34.615 0.00 0.00 0.00 2.29
922 973 7.521423 CGAGACAAGAGAAGAGAAGAGAAGAAA 60.521 40.741 0.00 0.00 0.00 2.52
923 974 6.072728 CGAGACAAGAGAAGAGAAGAGAAGAA 60.073 42.308 0.00 0.00 0.00 2.52
924 975 5.411361 CGAGACAAGAGAAGAGAAGAGAAGA 59.589 44.000 0.00 0.00 0.00 2.87
925 976 5.631026 CGAGACAAGAGAAGAGAAGAGAAG 58.369 45.833 0.00 0.00 0.00 2.85
928 979 3.427503 GGCGAGACAAGAGAAGAGAAGAG 60.428 52.174 0.00 0.00 0.00 2.85
943 994 4.154347 CTCCCTGGCTGGCGAGAC 62.154 72.222 17.92 0.00 36.10 3.36
1153 1238 0.461870 CACCGATTCCATCCTGCGAA 60.462 55.000 0.00 0.00 0.00 4.70
1309 1394 2.101082 CGAAGGGTAAGGTAAGAGGAGC 59.899 54.545 0.00 0.00 0.00 4.70
1314 1401 2.489329 CGACACGAAGGGTAAGGTAAGA 59.511 50.000 0.00 0.00 0.00 2.10
1326 1413 2.661566 CCACAGCTGCGACACGAAG 61.662 63.158 15.27 0.00 35.28 3.79
1345 1432 2.650813 ATCCAGGCGAGCGGATCAAC 62.651 60.000 0.00 0.00 37.46 3.18
1367 1454 4.070552 AGAACCAGAGGACGCCGC 62.071 66.667 0.00 0.00 0.00 6.53
1380 1467 2.561478 TCTAACAACCCAGGCAGAAC 57.439 50.000 0.00 0.00 0.00 3.01
1387 1474 7.305474 GTGATTGTACAAATCTAACAACCCAG 58.695 38.462 13.23 0.00 36.06 4.45
1407 1494 3.486383 ACTTCACCAATTGACCGTGATT 58.514 40.909 14.29 5.09 36.47 2.57
1412 1499 4.817517 AGTAGTACTTCACCAATTGACCG 58.182 43.478 7.12 0.00 32.26 4.79
1429 1516 5.246981 ACATATATGCCATGCCAAGTAGT 57.753 39.130 12.79 0.00 0.00 2.73
1430 1517 5.706833 TCAACATATATGCCATGCCAAGTAG 59.293 40.000 12.79 0.00 0.00 2.57
1434 1521 4.278919 CAGTCAACATATATGCCATGCCAA 59.721 41.667 12.79 0.00 0.00 4.52
1447 1534 7.523293 AAATGGTTCATGAACAGTCAACATA 57.477 32.000 33.42 12.48 42.85 2.29
1449 1536 5.850557 AAATGGTTCATGAACAGTCAACA 57.149 34.783 33.42 22.99 42.85 3.33
1475 1564 8.928733 CCTACTGTACGTTTTAGAGCAATTTAA 58.071 33.333 0.00 0.00 0.00 1.52
1476 1565 8.306038 TCCTACTGTACGTTTTAGAGCAATTTA 58.694 33.333 0.00 0.00 0.00 1.40
1477 1566 7.156673 TCCTACTGTACGTTTTAGAGCAATTT 58.843 34.615 0.00 0.00 0.00 1.82
1479 1568 6.276832 TCCTACTGTACGTTTTAGAGCAAT 57.723 37.500 0.00 0.00 0.00 3.56
1487 1576 7.430992 GGAAAGAAATCCTACTGTACGTTTT 57.569 36.000 0.00 0.00 36.50 2.43
1500 1590 4.339748 AGCAGAAGGAAGGAAAGAAATCC 58.660 43.478 0.00 0.00 39.96 3.01
1514 1604 4.614535 GCACAATGACTTGTAAGCAGAAGG 60.615 45.833 0.00 0.00 43.76 3.46
1538 1628 6.824305 AAATGCAGTCTAAGCAGTATTTGT 57.176 33.333 0.00 0.00 46.36 2.83
1539 1629 8.400947 ACATAAATGCAGTCTAAGCAGTATTTG 58.599 33.333 0.00 0.00 46.36 2.32
1567 1726 0.930310 CGTCTAATCACGCCCACATG 59.070 55.000 0.00 0.00 31.96 3.21
1575 1734 3.395858 AACTCGTACCGTCTAATCACG 57.604 47.619 0.00 0.00 39.61 4.35
1584 1743 5.063817 GGCAATTTTACATAACTCGTACCGT 59.936 40.000 0.00 0.00 0.00 4.83
1585 1744 5.495502 GGCAATTTTACATAACTCGTACCG 58.504 41.667 0.00 0.00 0.00 4.02
1586 1745 5.220912 GGGGCAATTTTACATAACTCGTACC 60.221 44.000 0.00 0.00 0.00 3.34
1595 1755 7.364200 CGATATTTTCGGGGCAATTTTACATA 58.636 34.615 0.00 0.00 44.28 2.29
1615 1775 5.661458 CACTTGTACCAACCTCTTCGATAT 58.339 41.667 0.00 0.00 0.00 1.63
1616 1776 4.619863 GCACTTGTACCAACCTCTTCGATA 60.620 45.833 0.00 0.00 0.00 2.92
1617 1777 3.864921 GCACTTGTACCAACCTCTTCGAT 60.865 47.826 0.00 0.00 0.00 3.59
1619 1779 1.798813 GCACTTGTACCAACCTCTTCG 59.201 52.381 0.00 0.00 0.00 3.79
1645 1805 2.772287 ACAAGCAGTTAGGTTCTGAGC 58.228 47.619 0.00 0.00 35.33 4.26
1690 1850 3.198068 TGATCTAATTGCTCGCTCCAAC 58.802 45.455 0.00 0.00 0.00 3.77
1717 1877 0.541998 TTCCTGCCGAGAGAACCTCA 60.542 55.000 0.00 0.00 42.06 3.86
1724 1884 1.757118 TGTATCCTTTCCTGCCGAGAG 59.243 52.381 0.00 0.00 0.00 3.20
1744 1904 0.038744 AGTTGCTATGCAGTGCCCTT 59.961 50.000 13.72 0.00 40.61 3.95
1747 1907 1.270550 ACAAAGTTGCTATGCAGTGCC 59.729 47.619 13.72 0.00 40.61 5.01
1813 1973 2.513666 TCCGCGACATTGGATGCC 60.514 61.111 8.23 0.00 0.00 4.40
1904 2064 0.620556 TCTTGATGTTGAGGAGGGCC 59.379 55.000 0.00 0.00 0.00 5.80
1905 2065 2.725221 ATCTTGATGTTGAGGAGGGC 57.275 50.000 0.00 0.00 0.00 5.19
2143 2303 0.806868 ATGATTGTTCAGCAGCACCG 59.193 50.000 0.00 0.00 34.73 4.94
2206 2366 2.887360 GCACTTGGCAATCCGCAT 59.113 55.556 0.00 0.00 45.17 4.73
2379 2539 6.707599 ACTAAGCTTCAAACTGAATCGTAC 57.292 37.500 0.00 0.00 35.59 3.67
2410 2570 8.310122 ACAACAAAGAATGGCAATATAAGGAT 57.690 30.769 0.00 0.00 0.00 3.24
2411 2571 7.716799 ACAACAAAGAATGGCAATATAAGGA 57.283 32.000 0.00 0.00 0.00 3.36
2438 2598 7.667575 TTCTTTCAGAGTATCCATCTAAGCT 57.332 36.000 0.00 0.00 33.66 3.74
2731 2892 8.390854 GCAGAATAATTATGATTATGCACAGC 57.609 34.615 14.94 7.44 46.09 4.40
2756 2917 1.392589 AGGGCGCAATGGATAAGTTG 58.607 50.000 10.83 0.00 0.00 3.16
2788 2949 2.513753 TGTGTGGTGGAATGTGGAATC 58.486 47.619 0.00 0.00 0.00 2.52
2854 3015 3.872696 TCAGCTGAAACTCTGTTGAACA 58.127 40.909 15.67 0.00 33.97 3.18
2946 3134 8.418597 AGTACAAGAAACAGTAAGGTATGAGA 57.581 34.615 0.00 0.00 0.00 3.27
3037 3225 1.839994 CTGATCTGGTGGGGCTTCTAA 59.160 52.381 0.00 0.00 0.00 2.10
3039 3227 1.919600 GCTGATCTGGTGGGGCTTCT 61.920 60.000 1.46 0.00 0.00 2.85
3040 3228 1.452833 GCTGATCTGGTGGGGCTTC 60.453 63.158 1.46 0.00 0.00 3.86
3101 3292 0.482446 AGTCTGCCATGGTTCCCAAA 59.518 50.000 14.67 0.00 36.95 3.28
3153 3344 2.289002 GGTGAATTGCTCCACGATCATC 59.711 50.000 0.00 0.00 34.30 2.92
3233 3424 1.667724 GAGATACACCATGCTGCACAC 59.332 52.381 3.57 0.00 0.00 3.82
3239 3430 4.652881 TGAGATCTTGAGATACACCATGCT 59.347 41.667 0.00 0.00 34.37 3.79
3297 3488 5.656416 CCCTAATTTGAAGTTCAGGGCATAA 59.344 40.000 12.76 1.68 36.56 1.90
3404 3600 1.840635 AGTCTCAAGTAAGGCCCCATC 59.159 52.381 0.00 0.00 0.00 3.51
3532 3728 7.934120 GGTATTATTACAGTTCAAGCAGATCCT 59.066 37.037 0.00 0.00 0.00 3.24
3642 3838 6.317391 ACTCTGCAGAATTATCAAAAGCCTAC 59.683 38.462 18.85 0.00 0.00 3.18
3757 3956 5.489792 ACTCAGTCAACAGGTCACAATAT 57.510 39.130 0.00 0.00 0.00 1.28
3759 3958 3.845781 ACTCAGTCAACAGGTCACAAT 57.154 42.857 0.00 0.00 0.00 2.71
3763 3962 4.404394 TCAGTTAACTCAGTCAACAGGTCA 59.596 41.667 4.77 0.00 0.00 4.02
3764 3963 4.945246 TCAGTTAACTCAGTCAACAGGTC 58.055 43.478 4.77 0.00 0.00 3.85
3790 3999 7.622893 AAGAAAAGAATATGCCAAGAGAGAC 57.377 36.000 0.00 0.00 0.00 3.36
3796 4005 9.136952 CTCTTTCAAAGAAAAGAATATGCCAAG 57.863 33.333 0.48 0.00 42.93 3.61
3797 4006 8.859090 TCTCTTTCAAAGAAAAGAATATGCCAA 58.141 29.630 0.48 0.00 42.93 4.52
3798 4007 8.408043 TCTCTTTCAAAGAAAAGAATATGCCA 57.592 30.769 0.48 0.00 42.93 4.92
3799 4008 8.518702 ACTCTCTTTCAAAGAAAAGAATATGCC 58.481 33.333 13.66 0.00 42.93 4.40
3800 4009 9.905171 AACTCTCTTTCAAAGAAAAGAATATGC 57.095 29.630 13.66 0.00 42.93 3.14
3902 4115 3.590574 AGGAGCCCCGGCCTTTTT 61.591 61.111 0.00 0.00 43.17 1.94
3956 4169 4.868171 TCTACCAAATAGCACGACAACATC 59.132 41.667 0.00 0.00 0.00 3.06
3985 4200 5.741011 TGGCTATTGGGTTTCAGTAAGTAG 58.259 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.