AutoCloner

Multiple sequence alignment - TraesCS4D01G253900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G253900	chr4D	100.000	4241	0	0	1	4241	422553582	422549342	0.000000e+00	7832.0
1	TraesCS4D01G253900	chr4D	74.290	599	111	27	1824	2408	421925654	421925085	3.320000e-51	213.0
2	TraesCS4D01G253900	chr4D	87.037	54	7	0	2448	2501	132207289	132207342	1.270000e-05	62.1
3	TraesCS4D01G253900	chr4B	92.222	2957	124	43	795	3743	519408189	519405331	0.000000e+00	4089.0
4	TraesCS4D01G253900	chr4B	94.790	499	26	0	3743	4241	519405209	519404711	0.000000e+00	778.0
5	TraesCS4D01G253900	chr4B	98.276	116	2	0	682	797	519410763	519410648	2.000000e-48	204.0
6	TraesCS4D01G253900	chr4B	88.889	54	6	0	2447	2500	512174473	512174420	2.740000e-07	67.6
7	TraesCS4D01G253900	chr4B	92.500	40	3	0	2440	2479	482619817	482619856	1.650000e-04	58.4
8	TraesCS4D01G253900	chr4A	93.048	2618	119	29	679	3271	41915501	41918080	0.000000e+00	3768.0
9	TraesCS4D01G253900	chr4A	94.000	900	52	2	3334	4231	41918536	41919435	0.000000e+00	1362.0
10	TraesCS4D01G253900	chr4A	91.566	249	19	2	679	927	41852826	41853072	4.060000e-90	342.0
11	TraesCS4D01G253900	chr1B	89.123	616	62	4	4	618	547599308	547598697	0.000000e+00	761.0
12	TraesCS4D01G253900	chr1B	86.514	393	46	3	155	540	28329034	28328642	3.920000e-115	425.0
13	TraesCS4D01G253900	chr1A	87.183	671	72	10	12	678	53416991	53416331	0.000000e+00	750.0
14	TraesCS4D01G253900	chr7D	86.726	678	83	6	1	676	34315906	34315234	0.000000e+00	747.0
15	TraesCS4D01G253900	chr5B	91.585	511	43	0	1	511	65539373	65539883	0.000000e+00	706.0
16	TraesCS4D01G253900	chr3D	85.359	683	87	7	1	681	369806581	369807252	0.000000e+00	695.0
17	TraesCS4D01G253900	chr2A	86.885	610	76	2	1	610	670686828	670687433	0.000000e+00	680.0
18	TraesCS4D01G253900	chr2A	86.207	58	6	2	2443	2500	728810586	728810531	1.270000e-05	62.1
19	TraesCS4D01G253900	chr7A	87.546	546	56	9	139	678	708920820	708920281	4.660000e-174	621.0
20	TraesCS4D01G253900	chr7A	85.965	57	6	1	2441	2497	9642367	9642421	4.580000e-05	60.2
21	TraesCS4D01G253900	chr3A	83.016	683	100	10	1	680	490934704	490935373	4.690000e-169	604.0
22	TraesCS4D01G253900	chr3B	81.481	189	30	5	493	680	351988974	351989158	2.640000e-32	150.0
23	TraesCS4D01G253900	chr3B	88.000	50	2	3	2430	2479	475992795	475992840	5.920000e-04	56.5
24	TraesCS4D01G253900	chr6D	76.580	269	56	6	3940	4205	470030050	470030314	1.590000e-29	141.0
25	TraesCS4D01G253900	chr2B	75.197	254	53	9	3957	4205	39977416	39977664	1.250000e-20	111.0
26	TraesCS4D01G253900	chr2B	92.857	42	3	0	2438	2479	175400422	175400463	1.270000e-05	62.1
27	TraesCS4D01G253900	chr7B	88.889	54	5	1	2444	2497	530377813	530377865	9.840000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G253900	chr4D	422549342	422553582	4240	True	7832.000000	7832	100.000	1	4241	1	chr4D.!!$R2	4240
1	TraesCS4D01G253900	chr4D	421925085	421925654	569	True	213.000000	213	74.290	1824	2408	1	chr4D.!!$R1	584
2	TraesCS4D01G253900	chr4B	519404711	519410763	6052	True	1690.333333	4089	95.096	682	4241	3	chr4B.!!$R2	3559
3	TraesCS4D01G253900	chr4A	41915501	41919435	3934	False	2565.000000	3768	93.524	679	4231	2	chr4A.!!$F2	3552
4	TraesCS4D01G253900	chr1B	547598697	547599308	611	True	761.000000	761	89.123	4	618	1	chr1B.!!$R2	614
5	TraesCS4D01G253900	chr1A	53416331	53416991	660	True	750.000000	750	87.183	12	678	1	chr1A.!!$R1	666
6	TraesCS4D01G253900	chr7D	34315234	34315906	672	True	747.000000	747	86.726	1	676	1	chr7D.!!$R1	675
7	TraesCS4D01G253900	chr5B	65539373	65539883	510	False	706.000000	706	91.585	1	511	1	chr5B.!!$F1	510
8	TraesCS4D01G253900	chr3D	369806581	369807252	671	False	695.000000	695	85.359	1	681	1	chr3D.!!$F1	680
9	TraesCS4D01G253900	chr2A	670686828	670687433	605	False	680.000000	680	86.885	1	610	1	chr2A.!!$F1	609
10	TraesCS4D01G253900	chr7A	708920281	708920820	539	True	621.000000	621	87.546	139	678	1	chr7A.!!$R1	539
11	TraesCS4D01G253900	chr3A	490934704	490935373	669	False	604.000000	604	83.016	1	680	1	chr3A.!!$F1	679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
828	3304	0.107017	TGCTAGGCAAAGGCATCTCC	60.107	55.0	0.0	0.0	43.71	3.71	F
1471	3958	0.463116	AAGTTCGTGGTGTGGTGGTC	60.463	55.0	0.0	0.0	0.00	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2466	4968	0.248012	TGAGCGGCAAGTAATTCCGA	59.752	50.0	14.89	0.0	45.53	4.55	R
3436	6335	1.240641	TGCAACCGAAATGGCACGAT	61.241	50.0	0.00	0.0	43.94	3.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
54	55	2.963432	CCAATTTGGTGAGATTGGTGC	58.037	47.619	7.31	0.00	44.61	5.01
99	100	0.681887	TCTTCCTCACCACGGCGATA	60.682	55.000	16.62	0.00	0.00	2.92
147	148	2.089349	GTCTCGTCTGCTTGCCGTC	61.089	63.158	0.00	0.00	0.00	4.79
197	198	1.174078	TGTCTGGCGGTTGTCGTCTA	61.174	55.000	0.00	0.00	44.97	2.59
341	350	1.683441	GTGGGGAACATCCTCGGTT	59.317	57.895	0.00	0.00	40.96	4.44
404	413	0.782384	CGACTCACAACGCCTACAAC	59.218	55.000	0.00	0.00	0.00	3.32
453	462	2.125350	GGTGCTCTGCCTCTTCCG	60.125	66.667	0.00	0.00	0.00	4.30
499	508	1.134694	GTTGGCGGCGATTTCAGAC	59.865	57.895	12.98	0.00	0.00	3.51
534	543	6.772716	TGCAGGGACTCCAATAGATTTATTTC	59.227	38.462	0.00	0.00	34.60	2.17
562	571	9.750125	AATATTCTTTTGTGTGGAGTTCTTTTC	57.250	29.630	0.00	0.00	0.00	2.29
611	623	4.022155	GTCTCGGTCTTTCTGGTAGTTTCT	60.022	45.833	0.00	0.00	0.00	2.52
828	3304	0.107017	TGCTAGGCAAAGGCATCTCC	60.107	55.000	0.00	0.00	43.71	3.71
858	3339	3.644399	GAACTCCCGCTCGACACCC	62.644	68.421	0.00	0.00	0.00	4.61
897	3383	1.066787	GCGTACCCTTCTCTCAAAGCT	60.067	52.381	0.00	0.00	0.00	3.74
898	3384	2.611518	CGTACCCTTCTCTCAAAGCTG	58.388	52.381	0.00	0.00	0.00	4.24
925	3411	2.110006	GCCGCCTCTCCTTCCATC	59.890	66.667	0.00	0.00	0.00	3.51
927	3413	2.812619	CCGCCTCTCCTTCCATCCC	61.813	68.421	0.00	0.00	0.00	3.85
928	3414	2.812619	CGCCTCTCCTTCCATCCCC	61.813	68.421	0.00	0.00	0.00	4.81
929	3415	1.385206	GCCTCTCCTTCCATCCCCT	60.385	63.158	0.00	0.00	0.00	4.79
1131	3617	4.020617	CTTGCCGAGCTCCCCACA	62.021	66.667	8.47	0.00	0.00	4.17
1391	3877	3.777522	AGGGTTCCTCGATTCATCTTCTT	59.222	43.478	0.00	0.00	0.00	2.52
1431	3917	5.429130	GGAAATCCGAGTCATTTTAGAGGT	58.571	41.667	0.00	0.00	0.00	3.85
1443	3929	6.093633	GTCATTTTAGAGGTCGGCTTGTTTAT	59.906	38.462	0.00	0.00	0.00	1.40
1471	3958	0.463116	AAGTTCGTGGTGTGGTGGTC	60.463	55.000	0.00	0.00	0.00	4.02
1513	4000	7.117812	GGTATGTCAAGGTGATAAATGGTATCG	59.882	40.741	0.00	0.00	0.00	2.92
1547	4034	3.706600	TTTGGGGCGTTATCTTGTAGT	57.293	42.857	0.00	0.00	0.00	2.73
1733	4222	6.650427	AGGTACTAGCATTACGATGAATGA	57.350	37.500	11.75	0.00	36.40	2.57
1753	4242	2.656947	AATGCAATATAGCCCGGTGT	57.343	45.000	0.00	0.00	0.00	4.16
1815	4304	7.391833	TGTTGCATTATGTGACATTACAGGTTA	59.608	33.333	2.29	0.00	33.44	2.85
2076	4566	6.540551	GCCTAAACTTTCCTCTATCTCCTTTG	59.459	42.308	0.00	0.00	0.00	2.77
2154	4644	5.401531	AATGCTGTAGGAAGTACGAAGAA	57.598	39.130	0.00	0.00	33.87	2.52
2265	4763	5.975693	TTTGGTAAATTTCCTAGCACTGG	57.024	39.130	0.00	0.00	0.00	4.00
2410	4912	3.865745	CGTGCTCTATCTGAAATTTCCGT	59.134	43.478	15.48	4.31	0.00	4.69
2466	4968	2.005370	TGTCAAGTACTCCCTCCGTT	57.995	50.000	0.00	0.00	0.00	4.44
2468	4970	1.135460	GTCAAGTACTCCCTCCGTTCG	60.135	57.143	0.00	0.00	0.00	3.95
2489	4991	2.415491	GGAATTACTTGCCGCTCAAACC	60.415	50.000	0.00	0.00	33.65	3.27
2503	5005	5.432157	CGCTCAAACCGATGTATGTAATTC	58.568	41.667	0.00	0.00	0.00	2.17
2740	5242	0.378257	AACTTCAGTGTGCAAGTGCG	59.622	50.000	0.00	0.00	45.83	5.34
2820	5322	1.952296	CATAAGGTTCCTGCCATCAGC	59.048	52.381	0.00	0.00	39.00	4.26
2826	5328	2.648059	GTTCCTGCCATCAGCTATTGT	58.352	47.619	0.00	0.00	44.23	2.71
2925	5431	5.919141	GCTGAATCAATCCACATTATGCTTC	59.081	40.000	0.00	0.00	0.00	3.86
3007	5513	3.490761	GCTACAAGGTCTCTGATCTCAGC	60.491	52.174	2.21	0.00	43.46	4.26
3049	5555	0.675633	ATTTGCAGTTGGGCAGACAC	59.324	50.000	0.00	0.00	45.88	3.67
3082	5588	0.543749	AGGCCATCAGGAGCAAGTAC	59.456	55.000	5.01	0.00	36.89	2.73
3091	5597	0.038159	GGAGCAAGTACAGTGAGCGT	60.038	55.000	0.00	0.00	0.00	5.07
3112	5618	0.543174	AGGTGATATCCGCTCTCCCC	60.543	60.000	0.00	0.00	0.00	4.81
3255	5761	0.877071	AGTGAAAGGCTGACAATGCG	59.123	50.000	0.00	0.00	0.00	4.73
3256	5762	0.109597	GTGAAAGGCTGACAATGCGG	60.110	55.000	0.00	0.00	0.00	5.69
3304	5810	3.208747	GGAGCGGATCCCTTATTTTCA	57.791	47.619	6.06	0.00	43.01	2.69
3306	5812	3.142174	GAGCGGATCCCTTATTTTCAGG	58.858	50.000	6.06	0.00	0.00	3.86
3323	5829	8.746052	ATTTTCAGGGAAAAAGGGTTTAAAAG	57.254	30.769	8.06	0.00	43.32	2.27
3344	6243	2.551938	GGCTGATTTGCTCTAGATCCCC	60.552	54.545	0.00	0.00	0.00	4.81
3428	6327	1.195115	TCTCTCATGGCCACCTGTAC	58.805	55.000	8.16	0.00	0.00	2.90
3436	6335	2.246469	TGGCCACCTGTACGTAGTTAA	58.754	47.619	0.00	0.00	37.78	2.01
3491	6392	5.047448	GCCATCTAGCTCATCTGTAATCTGA	60.047	44.000	0.00	0.00	0.00	3.27
3649	6550	7.868906	TGAAGTGATCATCATATGCTCAAAA	57.131	32.000	0.00	0.00	37.19	2.44
3662	6563	2.371179	TGCTCAAAATTGAAATGGGGCA	59.629	40.909	0.00	0.06	36.64	5.36
3813	6836	6.670927	GCGATTTGAGTAAAGTTCAGTAGCAG	60.671	42.308	0.00	0.00	0.00	4.24
3839	6862	2.002586	CTTCAGAATGGTGTCGCGATT	58.997	47.619	14.06	0.56	36.16	3.34
3860	6883	7.495934	GCGATTATTACATGGGTAATCTAGCAT	59.504	37.037	17.40	0.00	44.88	3.79
3941	6964	1.338973	TGAGCTTGACTTACGAACGGT	59.661	47.619	0.00	0.00	0.00	4.83
3946	6970	2.251869	TGACTTACGAACGGTGATCG	57.748	50.000	0.95	0.95	45.47	3.69
4040	7064	2.566570	TAGCCGTCGTTGGTGCAGA	61.567	57.895	0.00	0.00	0.00	4.26
4171	7195	2.029964	GTCCTCACGCGGTGGAAA	59.970	61.111	12.47	0.00	40.67	3.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	5.916661	AATTGGCTCTACTAGACGAAGAA	57.083	39.130	0.00	0.00	35.07	2.52
54	55	0.304705	GGCCACATTATTCGACGCAG	59.695	55.000	0.00	0.00	0.00	5.18
221	222	2.871022	CTCTGTACCAGCATCAATCTGC	59.129	50.000	0.00	0.00	42.62	4.26
341	350	1.270785	ACTTGACGATGTGGCATGTCA	60.271	47.619	0.00	0.00	39.42	3.58
499	508	1.338020	GAGTCCCTGCAAACAACCAAG	59.662	52.381	0.00	0.00	0.00	3.61
562	571	3.003689	ACAGATGTCCAGAAAACTTTGCG	59.996	43.478	0.00	0.00	0.00	4.85
828	3304	2.477863	GCGGGAGTTCAAATCGAAATGG	60.478	50.000	0.00	0.00	34.69	3.16
858	3339	0.317186	CGGTCCGGGTTTTCAAAACG	60.317	55.000	2.34	0.00	0.00	3.60
916	3402	2.376842	GGGGAGGGGATGGAAGGA	59.623	66.667	0.00	0.00	0.00	3.36
917	3403	2.778717	GGGGGAGGGGATGGAAGG	60.779	72.222	0.00	0.00	0.00	3.46
918	3404	2.081161	CAGGGGGAGGGGATGGAAG	61.081	68.421	0.00	0.00	0.00	3.46
919	3405	2.044450	CAGGGGGAGGGGATGGAA	59.956	66.667	0.00	0.00	0.00	3.53
920	3406	4.843331	GCAGGGGGAGGGGATGGA	62.843	72.222	0.00	0.00	0.00	3.41
946	3432	2.475172	GGGGGTTTGGGAGGGTTCA	61.475	63.158	0.00	0.00	0.00	3.18
1338	3824	2.278596	CGCAGGTACCCGTCGATG	60.279	66.667	8.74	0.00	0.00	3.84
1382	3868	3.681417	CGCATTGTCAGACAAGAAGATGA	59.319	43.478	20.55	0.00	41.94	2.92
1391	3877	2.316867	CCGCACGCATTGTCAGACA	61.317	57.895	0.00	0.00	0.00	3.41
1431	3917	0.963355	GCACCCCATAAACAAGCCGA	60.963	55.000	0.00	0.00	0.00	5.54
1443	3929	2.280524	CACGAACTTCGCACCCCA	60.281	61.111	11.15	0.00	45.12	4.96
1513	4000	2.228582	GCCCCAAAATTCCAAAATGTGC	59.771	45.455	0.00	0.00	0.00	4.57
1547	4034	3.689161	CCAAATTCCAGAATGCACGACTA	59.311	43.478	0.00	0.00	31.97	2.59
1591	4078	8.604035	TCTAACAGTAAAAGATGATTGATTCGC	58.396	33.333	0.00	0.00	0.00	4.70
1604	4092	9.014297	AGAAATGTCCCAATCTAACAGTAAAAG	57.986	33.333	0.00	0.00	0.00	2.27
1681	4170	8.198109	AGACAATAAGGATGACATGTACAGTAC	58.802	37.037	0.00	3.49	0.00	2.73
1685	4174	7.181569	TCAGACAATAAGGATGACATGTACA	57.818	36.000	0.00	0.00	0.00	2.90
1733	4222	2.944129	ACACCGGGCTATATTGCATTT	58.056	42.857	6.32	0.00	34.04	2.32
1753	4242	1.074084	TCCCTCATTTTTGCCACGGTA	59.926	47.619	0.00	0.00	0.00	4.02
1798	4287	8.855110	TCAATTGTTTAACCTGTAATGTCACAT	58.145	29.630	5.13	0.00	0.00	3.21
1815	4304	1.614317	CCTCGGCCTCCTCAATTGTTT	60.614	52.381	5.13	0.00	0.00	2.83
2076	4566	3.608316	AGAGATGACAAAGAGAGGCAC	57.392	47.619	0.00	0.00	0.00	5.01
2154	4644	4.922206	TGTCCAGCTTAGGAACATGAATT	58.078	39.130	0.00	0.00	39.92	2.17
2196	4689	1.271817	TGCTGATTGGTGTATGTGCCA	60.272	47.619	0.00	0.00	0.00	4.92
2265	4763	6.924111	ACAAATTTATCTCCACCATTCACAC	58.076	36.000	0.00	0.00	0.00	3.82
2368	4870	8.773404	AGCACGTACAATAGAAAAGTTCTTAT	57.227	30.769	0.00	0.00	41.14	1.73
2466	4968	0.248012	TGAGCGGCAAGTAATTCCGA	59.752	50.000	14.89	0.00	45.53	4.55
2468	4970	2.415491	GGTTTGAGCGGCAAGTAATTCC	60.415	50.000	1.45	0.00	37.87	3.01
2489	4991	2.984471	CCGTCCGGAATTACATACATCG	59.016	50.000	5.23	0.00	37.50	3.84
2503	5005	1.339291	GTAACTATTCCCTCCGTCCGG	59.661	57.143	0.00	0.00	0.00	5.14
2692	5194	6.266786	AGGGGGAAACATGTTACAAAACTAAG	59.733	38.462	12.39	0.00	36.51	2.18
2696	5198	4.948341	AGGGGGAAACATGTTACAAAAC	57.052	40.909	12.39	1.48	36.07	2.43
2740	5242	5.222631	CAACACATAAGCTCCAACCTTTTC	58.777	41.667	0.00	0.00	0.00	2.29
2820	5322	2.430465	ACAGACAGGCAGCAACAATAG	58.570	47.619	0.00	0.00	0.00	1.73
2826	5328	2.771089	CTAAGAACAGACAGGCAGCAA	58.229	47.619	0.00	0.00	0.00	3.91
2925	5431	3.129852	TGTCAGAACAAACACAAAGCG	57.870	42.857	0.00	0.00	30.70	4.68
3049	5555	5.241064	CCTGATGGCCTTCAGATTTGAATAG	59.759	44.000	37.67	20.38	44.88	1.73
3082	5588	3.643763	GGATATCACCTTACGCTCACTG	58.356	50.000	4.83	0.00	0.00	3.66
3091	5597	2.526432	GGGAGAGCGGATATCACCTTA	58.474	52.381	4.83	0.00	0.00	2.69
3112	5618	3.236816	CATGTAACAGCCAAAGAAAGCG	58.763	45.455	0.00	0.00	0.00	4.68
3151	5657	4.260620	CCCGAACTGTACAGTCACAAAAAG	60.261	45.833	28.04	12.74	41.58	2.27
3212	5718	4.505324	TCGAGGTCTTTGAGGAGAGATA	57.495	45.455	0.00	0.00	0.00	1.98
3255	5761	6.455360	TCCATCTTATGTTGAAATGAAGCC	57.545	37.500	0.00	0.00	0.00	4.35
3256	5762	6.474751	GCTTCCATCTTATGTTGAAATGAAGC	59.525	38.462	0.00	0.00	33.39	3.86
3303	5809	4.102524	AGCCTTTTAAACCCTTTTTCCCTG	59.897	41.667	0.00	0.00	0.00	4.45
3304	5810	4.102524	CAGCCTTTTAAACCCTTTTTCCCT	59.897	41.667	0.00	0.00	0.00	4.20
3306	5812	5.284861	TCAGCCTTTTAAACCCTTTTTCC	57.715	39.130	0.00	0.00	0.00	3.13
3308	5814	6.039270	GCAAATCAGCCTTTTAAACCCTTTTT	59.961	34.615	0.00	0.00	0.00	1.94
3312	5818	3.903714	AGCAAATCAGCCTTTTAAACCCT	59.096	39.130	0.00	0.00	34.23	4.34
3316	5822	7.067494	GGATCTAGAGCAAATCAGCCTTTTAAA	59.933	37.037	10.68	0.00	34.23	1.52
3323	5829	2.551938	GGGGATCTAGAGCAAATCAGCC	60.552	54.545	10.68	0.00	34.23	4.85
3344	6243	3.696051	TGCCTTAGCCTGCAAAAGAATAG	59.304	43.478	5.99	0.00	38.69	1.73
3428	6327	3.302221	CCGAAATGGCACGATTAACTACG	60.302	47.826	0.00	0.00	0.00	3.51
3436	6335	1.240641	TGCAACCGAAATGGCACGAT	61.241	50.000	0.00	0.00	43.94	3.73
3491	6392	3.194861	CATTCCGGTCACACGTTGATAT	58.805	45.455	0.00	0.00	36.32	1.63
3636	6537	6.584488	CCCCATTTCAATTTTGAGCATATGA	58.416	36.000	6.97	0.00	38.61	2.15
3642	6543	3.056588	TGCCCCATTTCAATTTTGAGC	57.943	42.857	0.00	0.00	38.61	4.26
3649	6550	3.724732	ATTTGCTTGCCCCATTTCAAT	57.275	38.095	0.00	0.00	0.00	2.57
3813	6836	3.512680	CGACACCATTCTGAAGTCCTAC	58.487	50.000	0.00	0.00	0.00	3.18
3839	6862	7.119116	CGCAAATGCTAGATTACCCATGTAATA	59.881	37.037	3.63	0.00	41.87	0.98
3853	6876	1.066215	TCTGAAGCCGCAAATGCTAGA	60.066	47.619	3.63	0.00	38.34	2.43
3860	6883	0.597568	CACCATTCTGAAGCCGCAAA	59.402	50.000	0.00	0.00	0.00	3.68
3941	6964	0.976073	GGGGTGGAGAAGGACGATCA	60.976	60.000	0.00	0.00	0.00	2.92
3946	6970	0.836400	TCTGTGGGGTGGAGAAGGAC	60.836	60.000	0.00	0.00	0.00	3.85
4040	7064	1.076906	ACCCTCTGCTGTACCGTCT	59.923	57.895	0.00	0.00	0.00	4.18
4081	7105	2.169789	CGTCCTTCTGAGCGCCATG	61.170	63.158	2.29	0.00	0.00	3.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.