Multiple sequence alignment - TraesCS4D01G253700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G253700 chr4D 100.000 3312 0 0 1 3312 422542677 422539366 0.000000e+00 6117.0
1 TraesCS4D01G253700 chr4D 95.455 44 2 0 2498 2541 422540109 422540066 1.650000e-08 71.3
2 TraesCS4D01G253700 chr4D 95.455 44 2 0 2569 2612 422540180 422540137 1.650000e-08 71.3
3 TraesCS4D01G253700 chr4D 90.000 50 3 2 1518 1567 3566351 3566304 2.760000e-06 63.9
4 TraesCS4D01G253700 chr4B 93.849 2520 102 24 805 3312 519380317 519377839 0.000000e+00 3746.0
5 TraesCS4D01G253700 chr4B 94.444 90 5 0 718 807 519387494 519387405 4.460000e-29 139.0
6 TraesCS4D01G253700 chr4B 95.556 45 2 0 2497 2541 519378577 519378533 4.580000e-09 73.1
7 TraesCS4D01G253700 chr4B 97.436 39 1 0 1518 1556 544041871 544041909 2.130000e-07 67.6
8 TraesCS4D01G253700 chr4B 91.111 45 4 0 1518 1562 106227441 106227397 9.920000e-06 62.1
9 TraesCS4D01G253700 chr4A 94.366 710 28 4 1941 2648 41936735 41937434 0.000000e+00 1079.0
10 TraesCS4D01G253700 chr4A 91.231 650 31 23 698 1339 41934672 41935303 0.000000e+00 861.0
11 TraesCS4D01G253700 chr4A 87.168 678 43 19 2640 3312 41943361 41943999 0.000000e+00 730.0
12 TraesCS4D01G253700 chr4A 90.120 415 30 6 1517 1927 41936190 41936597 2.260000e-146 529.0
13 TraesCS4D01G253700 chr4A 97.727 44 1 0 2498 2541 41937356 41937399 3.540000e-10 76.8
14 TraesCS4D01G253700 chr4A 97.436 39 1 0 1518 1556 29026053 29026091 2.130000e-07 67.6
15 TraesCS4D01G253700 chr2B 90.765 379 31 3 323 697 406538754 406538376 1.370000e-138 503.0
16 TraesCS4D01G253700 chr2B 93.252 326 20 2 1 325 106924888 106924564 2.310000e-131 479.0
17 TraesCS4D01G253700 chr2B 78.333 120 26 0 2131 2250 790316824 790316705 9.850000e-11 78.7
18 TraesCS4D01G253700 chr7D 90.789 380 27 6 323 697 630512811 630512435 4.930000e-138 501.0
19 TraesCS4D01G253700 chr3B 90.765 379 30 3 323 697 774821863 774821486 4.930000e-138 501.0
20 TraesCS4D01G253700 chr3B 90.130 385 30 6 323 701 486797837 486797455 8.260000e-136 494.0
21 TraesCS4D01G253700 chr6A 90.339 383 30 5 323 700 592276058 592275678 2.300000e-136 496.0
22 TraesCS4D01G253700 chr3D 90.501 379 31 5 323 696 588076420 588076042 2.300000e-136 496.0
23 TraesCS4D01G253700 chr3D 91.615 322 26 1 2 323 36169876 36169556 8.430000e-121 444.0
24 TraesCS4D01G253700 chr2D 90.476 378 29 5 323 695 292292208 292291833 2.970000e-135 492.0
25 TraesCS4D01G253700 chr2D 89.896 386 31 5 323 700 54106649 54107034 1.070000e-134 490.0
26 TraesCS4D01G253700 chr2D 90.052 382 31 5 323 697 508059340 508058959 3.840000e-134 488.0
27 TraesCS4D01G253700 chr6B 92.638 326 22 2 1 325 49732680 49733004 5.000000e-128 468.0
28 TraesCS4D01G253700 chr1B 92.638 326 23 1 1 325 683329 683004 5.000000e-128 468.0
29 TraesCS4D01G253700 chr1B 91.692 325 27 0 1 325 576027707 576028031 5.040000e-123 451.0
30 TraesCS4D01G253700 chr1B 83.221 149 23 2 2670 2817 681692074 681691927 5.770000e-28 135.0
31 TraesCS4D01G253700 chr7B 92.331 326 24 1 1 325 74569763 74570088 2.330000e-126 462.0
32 TraesCS4D01G253700 chr7B 91.692 325 26 1 1 325 178398583 178398906 1.810000e-122 449.0
33 TraesCS4D01G253700 chr7B 85.000 80 8 2 1260 1338 570439652 570439728 9.850000e-11 78.7
34 TraesCS4D01G253700 chr2A 92.000 325 26 0 1 325 41473135 41472811 1.080000e-124 457.0
35 TraesCS4D01G253700 chr3A 91.385 325 27 1 1 325 604498389 604498712 8.430000e-121 444.0
36 TraesCS4D01G253700 chr3A 84.270 89 12 1 1379 1465 208033785 208033697 5.890000e-13 86.1
37 TraesCS4D01G253700 chr3A 83.505 97 8 3 1378 1466 156234716 156234812 2.120000e-12 84.2
38 TraesCS4D01G253700 chr3A 95.122 41 0 2 1518 1558 523559799 523559761 2.760000e-06 63.9
39 TraesCS4D01G253700 chr1D 84.615 143 17 4 2667 2808 488571812 488571950 1.600000e-28 137.0
40 TraesCS4D01G253700 chr1D 95.122 41 2 0 1518 1558 92321456 92321416 7.670000e-07 65.8
41 TraesCS4D01G253700 chr5D 86.667 90 11 1 1377 1465 220683223 220683312 7.560000e-17 99.0
42 TraesCS4D01G253700 chr5D 84.706 85 13 0 1378 1462 213477903 213477987 5.890000e-13 86.1
43 TraesCS4D01G253700 chr5D 93.750 48 3 0 1378 1425 189263729 189263682 4.580000e-09 73.1
44 TraesCS4D01G253700 chr1A 97.436 39 1 0 1518 1556 155857738 155857700 2.130000e-07 67.6
45 TraesCS4D01G253700 chr6D 94.595 37 2 0 1481 1517 100523260 100523224 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G253700 chr4D 422539366 422542677 3311 True 2086.533333 6117 96.9700 1 3312 3 chr4D.!!$R2 3311
1 TraesCS4D01G253700 chr4B 519377839 519380317 2478 True 1909.550000 3746 94.7025 805 3312 2 chr4B.!!$R3 2507
2 TraesCS4D01G253700 chr4A 41943361 41943999 638 False 730.000000 730 87.1680 2640 3312 1 chr4A.!!$F2 672
3 TraesCS4D01G253700 chr4A 41934672 41937434 2762 False 636.450000 1079 93.3610 698 2648 4 chr4A.!!$F3 1950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.033503 TGACATAGTCAGAGGCCCGA 60.034 55.0 0.0 0.0 37.67 5.14 F
574 575 0.107214 TTCAGCAAATCCCGGCTAGG 60.107 55.0 0.0 0.0 38.56 3.02 F
578 579 0.179018 GCAAATCCCGGCTAGGTCAT 60.179 55.0 0.0 0.0 38.74 3.06 F
584 585 0.179073 CCCGGCTAGGTCATGTCAAG 60.179 60.0 0.0 0.0 38.74 3.02 F
1242 1250 0.249398 ACACGCTCATTACCCCAGTC 59.751 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1186 1194 0.535553 TCTTGTAACAACGTGGGGCC 60.536 55.000 0.00 0.00 0.0 5.80 R
1683 2449 0.602905 GTAGTGTTTGAGGGCGCAGT 60.603 55.000 10.83 0.00 0.0 4.40 R
2208 3104 1.339610 CCTTTCCACACGCAAATTCCA 59.660 47.619 0.00 0.00 0.0 3.53 R
2293 3189 1.490693 CCTACGTCCGTGATGCATGC 61.491 60.000 11.82 11.82 0.0 4.06 R
2389 3287 1.893808 CCTGTGCACGGTGAAGCTT 60.894 57.895 23.77 0.00 0.0 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.298197 CACTACAACAGACGACTATGACT 57.702 43.478 6.82 0.00 0.00 3.41
23 24 5.089411 CACTACAACAGACGACTATGACTG 58.911 45.833 6.82 0.00 37.60 3.51
24 25 5.001874 ACTACAACAGACGACTATGACTGA 58.998 41.667 0.00 0.00 35.91 3.41
25 26 4.162096 ACAACAGACGACTATGACTGAC 57.838 45.455 0.00 0.00 35.91 3.51
26 27 3.568430 ACAACAGACGACTATGACTGACA 59.432 43.478 0.00 0.00 35.91 3.58
27 28 4.218635 ACAACAGACGACTATGACTGACAT 59.781 41.667 0.00 0.00 42.39 3.06
28 29 5.414765 ACAACAGACGACTATGACTGACATA 59.585 40.000 0.00 0.29 40.07 2.29
40 41 2.504920 TGACATAGTCAGAGGCCCG 58.495 57.895 0.00 0.00 37.67 6.13
41 42 0.033503 TGACATAGTCAGAGGCCCGA 60.034 55.000 0.00 0.00 37.67 5.14
42 43 1.112113 GACATAGTCAGAGGCCCGAA 58.888 55.000 0.00 0.00 32.09 4.30
43 44 1.480954 GACATAGTCAGAGGCCCGAAA 59.519 52.381 0.00 0.00 32.09 3.46
44 45 2.103263 GACATAGTCAGAGGCCCGAAAT 59.897 50.000 0.00 0.00 32.09 2.17
45 46 3.305720 ACATAGTCAGAGGCCCGAAATA 58.694 45.455 0.00 0.00 0.00 1.40
46 47 3.904339 ACATAGTCAGAGGCCCGAAATAT 59.096 43.478 0.00 0.00 0.00 1.28
47 48 4.348168 ACATAGTCAGAGGCCCGAAATATT 59.652 41.667 0.00 0.00 0.00 1.28
48 49 3.933861 AGTCAGAGGCCCGAAATATTT 57.066 42.857 0.00 0.00 0.00 1.40
49 50 6.042781 ACATAGTCAGAGGCCCGAAATATTTA 59.957 38.462 0.00 0.00 0.00 1.40
50 51 5.367945 AGTCAGAGGCCCGAAATATTTAA 57.632 39.130 0.00 0.00 0.00 1.52
51 52 5.941788 AGTCAGAGGCCCGAAATATTTAAT 58.058 37.500 0.00 0.00 0.00 1.40
52 53 5.998363 AGTCAGAGGCCCGAAATATTTAATC 59.002 40.000 0.00 0.00 0.00 1.75
53 54 5.763204 GTCAGAGGCCCGAAATATTTAATCA 59.237 40.000 0.00 0.00 0.00 2.57
54 55 5.997746 TCAGAGGCCCGAAATATTTAATCAG 59.002 40.000 0.00 0.00 0.00 2.90
55 56 5.997746 CAGAGGCCCGAAATATTTAATCAGA 59.002 40.000 0.00 0.00 0.00 3.27
56 57 6.486657 CAGAGGCCCGAAATATTTAATCAGAA 59.513 38.462 0.00 0.00 0.00 3.02
57 58 7.013274 CAGAGGCCCGAAATATTTAATCAGAAA 59.987 37.037 0.00 0.00 0.00 2.52
58 59 7.013369 AGAGGCCCGAAATATTTAATCAGAAAC 59.987 37.037 0.00 0.00 0.00 2.78
59 60 6.040504 AGGCCCGAAATATTTAATCAGAAACC 59.959 38.462 0.00 0.00 0.00 3.27
60 61 6.183360 GGCCCGAAATATTTAATCAGAAACCA 60.183 38.462 0.00 0.00 0.00 3.67
61 62 7.262048 GCCCGAAATATTTAATCAGAAACCAA 58.738 34.615 0.00 0.00 0.00 3.67
62 63 7.762159 GCCCGAAATATTTAATCAGAAACCAAA 59.238 33.333 0.00 0.00 0.00 3.28
63 64 9.301153 CCCGAAATATTTAATCAGAAACCAAAG 57.699 33.333 0.00 0.00 0.00 2.77
64 65 8.807581 CCGAAATATTTAATCAGAAACCAAAGC 58.192 33.333 0.00 0.00 0.00 3.51
65 66 8.523464 CGAAATATTTAATCAGAAACCAAAGCG 58.477 33.333 0.00 0.00 0.00 4.68
66 67 9.353999 GAAATATTTAATCAGAAACCAAAGCGT 57.646 29.630 0.00 0.00 0.00 5.07
67 68 9.705290 AAATATTTAATCAGAAACCAAAGCGTT 57.295 25.926 0.00 0.00 0.00 4.84
68 69 8.687824 ATATTTAATCAGAAACCAAAGCGTTG 57.312 30.769 5.29 5.29 34.25 4.10
69 70 5.759506 TTAATCAGAAACCAAAGCGTTGA 57.240 34.783 14.32 0.00 36.83 3.18
70 71 4.647424 AATCAGAAACCAAAGCGTTGAA 57.353 36.364 14.32 0.00 36.83 2.69
71 72 3.414549 TCAGAAACCAAAGCGTTGAAC 57.585 42.857 14.32 2.56 36.83 3.18
72 73 3.013921 TCAGAAACCAAAGCGTTGAACT 58.986 40.909 14.32 4.68 36.83 3.01
73 74 3.442273 TCAGAAACCAAAGCGTTGAACTT 59.558 39.130 14.32 3.86 36.83 2.66
74 75 4.082463 TCAGAAACCAAAGCGTTGAACTTT 60.082 37.500 14.32 7.92 37.85 2.66
83 84 6.720012 AAAGCGTTGAACTTTGAAAACATT 57.280 29.167 0.00 0.00 36.04 2.71
84 85 6.720012 AAGCGTTGAACTTTGAAAACATTT 57.280 29.167 0.00 0.00 0.00 2.32
85 86 6.720012 AGCGTTGAACTTTGAAAACATTTT 57.280 29.167 0.00 0.00 0.00 1.82
86 87 7.127917 AGCGTTGAACTTTGAAAACATTTTT 57.872 28.000 0.00 0.00 0.00 1.94
111 112 9.453325 TTTAGAGGCAAACAAGTATTAAAAACG 57.547 29.630 0.00 0.00 0.00 3.60
112 113 7.034685 AGAGGCAAACAAGTATTAAAAACGT 57.965 32.000 0.00 0.00 0.00 3.99
113 114 8.156994 AGAGGCAAACAAGTATTAAAAACGTA 57.843 30.769 0.00 0.00 0.00 3.57
114 115 8.789762 AGAGGCAAACAAGTATTAAAAACGTAT 58.210 29.630 0.00 0.00 0.00 3.06
115 116 9.401873 GAGGCAAACAAGTATTAAAAACGTATT 57.598 29.630 0.00 0.00 0.00 1.89
116 117 9.752961 AGGCAAACAAGTATTAAAAACGTATTT 57.247 25.926 0.00 0.00 0.00 1.40
151 152 9.906660 AATCTTTGAACATTTTATAAAGTGCGA 57.093 25.926 17.80 1.87 31.95 5.10
152 153 8.948853 TCTTTGAACATTTTATAAAGTGCGAG 57.051 30.769 17.80 10.17 31.95 5.03
153 154 7.537306 TCTTTGAACATTTTATAAAGTGCGAGC 59.463 33.333 17.80 7.75 31.95 5.03
154 155 6.247727 TGAACATTTTATAAAGTGCGAGCA 57.752 33.333 17.80 9.72 0.00 4.26
155 156 6.083630 TGAACATTTTATAAAGTGCGAGCAC 58.916 36.000 19.45 19.45 46.50 4.40
167 168 4.777140 GTGCGAGCACTTTTTGAAAATT 57.223 36.364 19.74 0.00 43.12 1.82
168 169 5.142635 GTGCGAGCACTTTTTGAAAATTT 57.857 34.783 19.74 0.00 43.12 1.82
169 170 5.190342 GTGCGAGCACTTTTTGAAAATTTC 58.810 37.500 19.74 0.00 43.12 2.17
170 171 4.026968 TGCGAGCACTTTTTGAAAATTTCG 60.027 37.500 0.97 0.00 0.00 3.46
171 172 4.206200 GCGAGCACTTTTTGAAAATTTCGA 59.794 37.500 0.97 0.00 0.00 3.71
172 173 5.608206 GCGAGCACTTTTTGAAAATTTCGAG 60.608 40.000 0.97 0.03 0.00 4.04
173 174 5.455525 CGAGCACTTTTTGAAAATTTCGAGT 59.544 36.000 0.97 0.60 0.00 4.18
174 175 6.631238 CGAGCACTTTTTGAAAATTTCGAGTA 59.369 34.615 0.97 0.00 0.00 2.59
175 176 7.356476 CGAGCACTTTTTGAAAATTTCGAGTAC 60.356 37.037 0.97 0.00 0.00 2.73
176 177 7.480810 AGCACTTTTTGAAAATTTCGAGTACT 58.519 30.769 0.00 0.00 0.00 2.73
177 178 7.973944 AGCACTTTTTGAAAATTTCGAGTACTT 59.026 29.630 0.00 0.00 0.00 2.24
178 179 8.592155 GCACTTTTTGAAAATTTCGAGTACTTT 58.408 29.630 0.00 0.00 0.00 2.66
204 205 4.944962 AAGCCAACAACTTTGAAAAAGC 57.055 36.364 0.00 0.00 0.00 3.51
205 206 2.929398 AGCCAACAACTTTGAAAAAGCG 59.071 40.909 0.00 0.00 0.00 4.68
206 207 2.926838 GCCAACAACTTTGAAAAAGCGA 59.073 40.909 0.00 0.00 0.00 4.93
207 208 3.369451 GCCAACAACTTTGAAAAAGCGAA 59.631 39.130 0.00 0.00 0.00 4.70
208 209 4.723754 GCCAACAACTTTGAAAAAGCGAAC 60.724 41.667 0.00 0.00 0.00 3.95
209 210 4.387256 CCAACAACTTTGAAAAAGCGAACA 59.613 37.500 0.00 0.00 0.00 3.18
210 211 5.305036 CAACAACTTTGAAAAAGCGAACAC 58.695 37.500 0.00 0.00 0.00 3.32
211 212 4.551388 ACAACTTTGAAAAAGCGAACACA 58.449 34.783 0.00 0.00 0.00 3.72
212 213 5.167845 ACAACTTTGAAAAAGCGAACACAT 58.832 33.333 0.00 0.00 0.00 3.21
213 214 5.637387 ACAACTTTGAAAAAGCGAACACATT 59.363 32.000 0.00 0.00 0.00 2.71
214 215 6.147000 ACAACTTTGAAAAAGCGAACACATTT 59.853 30.769 0.00 0.00 0.00 2.32
215 216 7.329717 ACAACTTTGAAAAAGCGAACACATTTA 59.670 29.630 0.00 0.00 0.00 1.40
216 217 8.327429 CAACTTTGAAAAAGCGAACACATTTAT 58.673 29.630 0.00 0.00 0.00 1.40
217 218 9.522804 AACTTTGAAAAAGCGAACACATTTATA 57.477 25.926 0.00 0.00 0.00 0.98
218 219 9.522804 ACTTTGAAAAAGCGAACACATTTATAA 57.477 25.926 0.00 0.00 0.00 0.98
221 222 8.858003 TGAAAAAGCGAACACATTTATAAACA 57.142 26.923 0.00 0.00 0.00 2.83
222 223 9.469807 TGAAAAAGCGAACACATTTATAAACAT 57.530 25.926 0.00 0.00 0.00 2.71
249 250 9.965824 TTTTTGCAACCTGAACAAAATTTTAAA 57.034 22.222 0.00 0.00 41.44 1.52
250 251 9.965824 TTTTGCAACCTGAACAAAATTTTAAAA 57.034 22.222 0.00 2.51 38.11 1.52
252 253 9.565213 TTGCAACCTGAACAAAATTTTAAAATG 57.435 25.926 14.04 6.36 0.00 2.32
253 254 7.699812 TGCAACCTGAACAAAATTTTAAAATGC 59.300 29.630 14.04 10.07 0.00 3.56
254 255 7.699812 GCAACCTGAACAAAATTTTAAAATGCA 59.300 29.630 14.04 0.00 0.00 3.96
255 256 9.565213 CAACCTGAACAAAATTTTAAAATGCAA 57.435 25.926 14.04 0.00 0.00 4.08
257 258 9.949174 ACCTGAACAAAATTTTAAAATGCAATC 57.051 25.926 14.04 9.67 0.00 2.67
258 259 9.947669 CCTGAACAAAATTTTAAAATGCAATCA 57.052 25.926 14.04 12.95 0.00 2.57
300 301 7.446001 TTTTTCTGCAACCTGAACAAAATTT 57.554 28.000 0.00 0.00 0.00 1.82
301 302 7.446001 TTTTCTGCAACCTGAACAAAATTTT 57.554 28.000 0.00 0.00 0.00 1.82
302 303 8.553459 TTTTCTGCAACCTGAACAAAATTTTA 57.447 26.923 2.44 0.00 0.00 1.52
303 304 8.729805 TTTCTGCAACCTGAACAAAATTTTAT 57.270 26.923 2.44 0.00 0.00 1.40
304 305 9.823647 TTTCTGCAACCTGAACAAAATTTTATA 57.176 25.926 2.44 0.00 0.00 0.98
305 306 9.474920 TTCTGCAACCTGAACAAAATTTTATAG 57.525 29.630 2.44 0.33 0.00 1.31
306 307 8.637986 TCTGCAACCTGAACAAAATTTTATAGT 58.362 29.630 2.44 0.00 0.00 2.12
307 308 8.586570 TGCAACCTGAACAAAATTTTATAGTG 57.413 30.769 2.44 0.00 0.00 2.74
308 309 8.200792 TGCAACCTGAACAAAATTTTATAGTGT 58.799 29.630 2.44 0.00 0.00 3.55
309 310 8.487176 GCAACCTGAACAAAATTTTATAGTGTG 58.513 33.333 2.44 0.00 0.00 3.82
310 311 8.977505 CAACCTGAACAAAATTTTATAGTGTGG 58.022 33.333 2.44 3.60 0.00 4.17
311 312 8.472007 ACCTGAACAAAATTTTATAGTGTGGA 57.528 30.769 2.44 0.00 0.00 4.02
312 313 8.357402 ACCTGAACAAAATTTTATAGTGTGGAC 58.643 33.333 2.44 0.00 0.00 4.02
313 314 8.356657 CCTGAACAAAATTTTATAGTGTGGACA 58.643 33.333 2.44 0.33 0.00 4.02
314 315 9.912634 CTGAACAAAATTTTATAGTGTGGACAT 57.087 29.630 2.44 0.00 0.00 3.06
417 418 9.862371 TTATCCAAAAATATTTAATGTGTGCGT 57.138 25.926 0.01 0.00 0.00 5.24
418 419 8.770438 ATCCAAAAATATTTAATGTGTGCGTT 57.230 26.923 0.01 0.00 0.00 4.84
419 420 9.862371 ATCCAAAAATATTTAATGTGTGCGTTA 57.138 25.926 0.01 0.00 0.00 3.18
420 421 9.692749 TCCAAAAATATTTAATGTGTGCGTTAA 57.307 25.926 0.01 0.00 35.10 2.01
429 430 8.851960 TTTAATGTGTGCGTTAAAAATGTACA 57.148 26.923 0.00 0.00 40.84 2.90
430 431 9.464714 TTTAATGTGTGCGTTAAAAATGTACAT 57.535 25.926 1.41 1.41 43.26 2.29
431 432 7.938563 AATGTGTGCGTTAAAAATGTACATT 57.061 28.000 15.47 15.47 43.26 2.71
432 433 6.739900 TGTGTGCGTTAAAAATGTACATTG 57.260 33.333 21.46 9.14 43.26 2.82
433 434 5.687730 TGTGTGCGTTAAAAATGTACATTGG 59.312 36.000 21.46 8.34 43.26 3.16
434 435 5.117897 GTGTGCGTTAAAAATGTACATTGGG 59.882 40.000 21.46 8.65 43.26 4.12
435 436 5.221263 TGTGCGTTAAAAATGTACATTGGGT 60.221 36.000 21.46 11.98 37.95 4.51
436 437 6.016527 TGTGCGTTAAAAATGTACATTGGGTA 60.017 34.615 21.46 11.06 37.95 3.69
453 454 9.747898 ACATTGGGTACTGATAAAATTTAGACA 57.252 29.630 0.00 0.00 0.00 3.41
456 457 9.747898 TTGGGTACTGATAAAATTTAGACATGT 57.252 29.630 0.00 0.00 0.00 3.21
518 519 9.384764 AGAAACTAAGAATAACCAGATTAGTGC 57.615 33.333 0.00 0.00 36.92 4.40
519 520 7.772332 AACTAAGAATAACCAGATTAGTGCG 57.228 36.000 0.00 0.00 36.92 5.34
520 521 6.875076 ACTAAGAATAACCAGATTAGTGCGT 58.125 36.000 0.00 0.00 35.82 5.24
521 522 6.757010 ACTAAGAATAACCAGATTAGTGCGTG 59.243 38.462 0.00 0.00 35.82 5.34
522 523 5.086104 AGAATAACCAGATTAGTGCGTGT 57.914 39.130 0.00 0.00 0.00 4.49
523 524 4.870426 AGAATAACCAGATTAGTGCGTGTG 59.130 41.667 0.00 0.00 0.00 3.82
524 525 1.156736 AACCAGATTAGTGCGTGTGC 58.843 50.000 0.00 0.00 43.20 4.57
534 535 3.932289 GCGTGTGCGTGAGTAACT 58.068 55.556 0.00 0.00 40.81 2.24
535 536 1.487231 GCGTGTGCGTGAGTAACTG 59.513 57.895 0.00 0.00 40.81 3.16
536 537 1.487231 CGTGTGCGTGAGTAACTGC 59.513 57.895 0.00 0.00 0.00 4.40
537 538 1.487231 GTGTGCGTGAGTAACTGCG 59.513 57.895 0.00 0.00 32.99 5.18
540 541 4.470876 GCGTGAGTAACTGCGCTA 57.529 55.556 9.73 0.00 45.48 4.26
541 542 1.989163 GCGTGAGTAACTGCGCTAC 59.011 57.895 9.73 2.58 45.48 3.58
542 543 0.456312 GCGTGAGTAACTGCGCTACT 60.456 55.000 9.73 8.41 45.48 2.57
543 544 1.260206 CGTGAGTAACTGCGCTACTG 58.740 55.000 12.05 1.10 29.62 2.74
544 545 1.630148 GTGAGTAACTGCGCTACTGG 58.370 55.000 12.05 0.00 29.62 4.00
545 546 0.530744 TGAGTAACTGCGCTACTGGG 59.469 55.000 12.05 0.00 29.62 4.45
554 555 3.476419 GCTACTGGGCCGGCCTAA 61.476 66.667 42.70 29.92 36.10 2.69
555 556 2.819284 GCTACTGGGCCGGCCTAAT 61.819 63.158 42.70 32.06 36.10 1.73
556 557 1.837090 CTACTGGGCCGGCCTAATT 59.163 57.895 42.70 28.56 36.10 1.40
557 558 0.250338 CTACTGGGCCGGCCTAATTC 60.250 60.000 42.70 27.09 36.10 2.17
558 559 0.983905 TACTGGGCCGGCCTAATTCA 60.984 55.000 42.70 30.06 36.10 2.57
559 560 1.526917 CTGGGCCGGCCTAATTCAG 60.527 63.158 42.70 34.21 36.10 3.02
560 561 2.907407 GGGCCGGCCTAATTCAGC 60.907 66.667 42.70 21.56 36.10 4.26
561 562 2.124320 GGCCGGCCTAATTCAGCA 60.124 61.111 38.76 0.00 0.00 4.41
562 563 1.752694 GGCCGGCCTAATTCAGCAA 60.753 57.895 38.76 0.00 0.00 3.91
563 564 1.319614 GGCCGGCCTAATTCAGCAAA 61.320 55.000 38.76 0.00 0.00 3.68
564 565 0.746659 GCCGGCCTAATTCAGCAAAT 59.253 50.000 18.11 0.00 0.00 2.32
565 566 1.269257 GCCGGCCTAATTCAGCAAATC 60.269 52.381 18.11 0.00 0.00 2.17
566 567 1.338020 CCGGCCTAATTCAGCAAATCC 59.662 52.381 0.00 0.00 0.00 3.01
567 568 1.338020 CGGCCTAATTCAGCAAATCCC 59.662 52.381 0.00 0.00 0.00 3.85
568 569 1.338020 GGCCTAATTCAGCAAATCCCG 59.662 52.381 0.00 0.00 0.00 5.14
569 570 1.338020 GCCTAATTCAGCAAATCCCGG 59.662 52.381 0.00 0.00 0.00 5.73
570 571 1.338020 CCTAATTCAGCAAATCCCGGC 59.662 52.381 0.00 0.00 0.00 6.13
571 572 2.301346 CTAATTCAGCAAATCCCGGCT 58.699 47.619 0.00 0.00 42.06 5.52
572 573 2.435372 AATTCAGCAAATCCCGGCTA 57.565 45.000 0.00 0.00 38.56 3.93
573 574 1.972872 ATTCAGCAAATCCCGGCTAG 58.027 50.000 0.00 0.00 38.56 3.42
574 575 0.107214 TTCAGCAAATCCCGGCTAGG 60.107 55.000 0.00 0.00 38.56 3.02
575 576 1.224592 CAGCAAATCCCGGCTAGGT 59.775 57.895 0.00 0.00 38.56 3.08
576 577 0.815615 CAGCAAATCCCGGCTAGGTC 60.816 60.000 0.00 0.00 38.56 3.85
577 578 1.223487 GCAAATCCCGGCTAGGTCA 59.777 57.895 0.00 0.00 38.74 4.02
578 579 0.179018 GCAAATCCCGGCTAGGTCAT 60.179 55.000 0.00 0.00 38.74 3.06
579 580 1.597742 CAAATCCCGGCTAGGTCATG 58.402 55.000 0.00 0.00 38.74 3.07
580 581 1.134098 CAAATCCCGGCTAGGTCATGT 60.134 52.381 0.00 0.00 38.74 3.21
581 582 0.759346 AATCCCGGCTAGGTCATGTC 59.241 55.000 0.00 0.00 38.74 3.06
582 583 0.398522 ATCCCGGCTAGGTCATGTCA 60.399 55.000 0.00 0.00 38.74 3.58
583 584 0.616395 TCCCGGCTAGGTCATGTCAA 60.616 55.000 0.00 0.00 38.74 3.18
584 585 0.179073 CCCGGCTAGGTCATGTCAAG 60.179 60.000 0.00 0.00 38.74 3.02
585 586 0.179073 CCGGCTAGGTCATGTCAAGG 60.179 60.000 0.00 0.00 34.51 3.61
586 587 0.537188 CGGCTAGGTCATGTCAAGGT 59.463 55.000 0.00 0.00 0.00 3.50
587 588 1.066143 CGGCTAGGTCATGTCAAGGTT 60.066 52.381 0.00 0.00 0.00 3.50
588 589 2.615493 CGGCTAGGTCATGTCAAGGTTT 60.615 50.000 0.00 0.00 0.00 3.27
589 590 3.369052 CGGCTAGGTCATGTCAAGGTTTA 60.369 47.826 0.00 0.00 0.00 2.01
590 591 4.585879 GGCTAGGTCATGTCAAGGTTTAA 58.414 43.478 0.00 0.00 0.00 1.52
591 592 5.007682 GGCTAGGTCATGTCAAGGTTTAAA 58.992 41.667 0.00 0.00 0.00 1.52
592 593 5.475564 GGCTAGGTCATGTCAAGGTTTAAAA 59.524 40.000 0.00 0.00 0.00 1.52
593 594 6.152831 GGCTAGGTCATGTCAAGGTTTAAAAT 59.847 38.462 0.00 0.00 0.00 1.82
594 595 7.338449 GGCTAGGTCATGTCAAGGTTTAAAATA 59.662 37.037 0.00 0.00 0.00 1.40
595 596 8.398665 GCTAGGTCATGTCAAGGTTTAAAATAG 58.601 37.037 0.00 0.00 0.00 1.73
596 597 9.667107 CTAGGTCATGTCAAGGTTTAAAATAGA 57.333 33.333 0.00 0.00 0.00 1.98
597 598 8.336801 AGGTCATGTCAAGGTTTAAAATAGAC 57.663 34.615 0.00 0.00 0.00 2.59
598 599 7.393515 AGGTCATGTCAAGGTTTAAAATAGACC 59.606 37.037 0.00 0.00 39.53 3.85
599 600 7.175990 GGTCATGTCAAGGTTTAAAATAGACCA 59.824 37.037 0.00 0.00 39.16 4.02
600 601 8.237267 GTCATGTCAAGGTTTAAAATAGACCAG 58.763 37.037 0.00 0.00 35.89 4.00
601 602 7.393234 TCATGTCAAGGTTTAAAATAGACCAGG 59.607 37.037 0.00 0.00 35.89 4.45
602 603 6.843752 TGTCAAGGTTTAAAATAGACCAGGA 58.156 36.000 0.00 0.00 35.89 3.86
603 604 7.466804 TGTCAAGGTTTAAAATAGACCAGGAT 58.533 34.615 0.00 0.00 35.89 3.24
604 605 7.947890 TGTCAAGGTTTAAAATAGACCAGGATT 59.052 33.333 0.00 0.00 35.89 3.01
605 606 9.457436 GTCAAGGTTTAAAATAGACCAGGATTA 57.543 33.333 0.00 0.00 35.89 1.75
606 607 9.681062 TCAAGGTTTAAAATAGACCAGGATTAG 57.319 33.333 0.00 0.00 35.89 1.73
607 608 9.681062 CAAGGTTTAAAATAGACCAGGATTAGA 57.319 33.333 0.00 0.00 35.89 2.10
608 609 9.907229 AAGGTTTAAAATAGACCAGGATTAGAG 57.093 33.333 0.00 0.00 35.89 2.43
609 610 9.280456 AGGTTTAAAATAGACCAGGATTAGAGA 57.720 33.333 0.00 0.00 35.89 3.10
610 611 9.549078 GGTTTAAAATAGACCAGGATTAGAGAG 57.451 37.037 0.00 0.00 33.61 3.20
615 616 6.739331 ATAGACCAGGATTAGAGAGTTTGG 57.261 41.667 0.00 0.00 0.00 3.28
616 617 4.430441 AGACCAGGATTAGAGAGTTTGGT 58.570 43.478 0.00 0.00 39.96 3.67
617 618 4.223923 AGACCAGGATTAGAGAGTTTGGTG 59.776 45.833 0.00 0.00 37.56 4.17
618 619 3.910627 ACCAGGATTAGAGAGTTTGGTGT 59.089 43.478 0.00 0.00 36.20 4.16
619 620 4.256920 CCAGGATTAGAGAGTTTGGTGTG 58.743 47.826 0.00 0.00 0.00 3.82
620 621 3.686726 CAGGATTAGAGAGTTTGGTGTGC 59.313 47.826 0.00 0.00 0.00 4.57
621 622 3.584848 AGGATTAGAGAGTTTGGTGTGCT 59.415 43.478 0.00 0.00 0.00 4.40
622 623 3.935828 GGATTAGAGAGTTTGGTGTGCTC 59.064 47.826 0.00 0.00 0.00 4.26
623 624 3.402628 TTAGAGAGTTTGGTGTGCTCC 57.597 47.619 0.00 0.00 0.00 4.70
624 625 1.428869 AGAGAGTTTGGTGTGCTCCT 58.571 50.000 0.00 0.00 0.00 3.69
625 626 1.771255 AGAGAGTTTGGTGTGCTCCTT 59.229 47.619 0.00 0.00 0.00 3.36
626 627 2.173569 AGAGAGTTTGGTGTGCTCCTTT 59.826 45.455 0.00 0.00 0.00 3.11
627 628 2.952310 GAGAGTTTGGTGTGCTCCTTTT 59.048 45.455 0.00 0.00 0.00 2.27
628 629 4.134563 GAGAGTTTGGTGTGCTCCTTTTA 58.865 43.478 0.00 0.00 0.00 1.52
629 630 4.137543 AGAGTTTGGTGTGCTCCTTTTAG 58.862 43.478 0.00 0.00 0.00 1.85
630 631 4.134563 GAGTTTGGTGTGCTCCTTTTAGA 58.865 43.478 0.00 0.00 0.00 2.10
631 632 4.137543 AGTTTGGTGTGCTCCTTTTAGAG 58.862 43.478 0.00 0.00 36.92 2.43
632 633 4.134563 GTTTGGTGTGCTCCTTTTAGAGA 58.865 43.478 0.00 0.00 35.82 3.10
633 634 4.640771 TTGGTGTGCTCCTTTTAGAGAT 57.359 40.909 0.00 0.00 35.82 2.75
634 635 4.640771 TGGTGTGCTCCTTTTAGAGATT 57.359 40.909 0.00 0.00 35.82 2.40
635 636 4.326826 TGGTGTGCTCCTTTTAGAGATTG 58.673 43.478 0.00 0.00 35.82 2.67
636 637 4.041567 TGGTGTGCTCCTTTTAGAGATTGA 59.958 41.667 0.00 0.00 35.82 2.57
637 638 4.633565 GGTGTGCTCCTTTTAGAGATTGAG 59.366 45.833 0.00 0.00 35.82 3.02
638 639 5.482908 GTGTGCTCCTTTTAGAGATTGAGA 58.517 41.667 0.00 0.00 35.82 3.27
639 640 5.934625 GTGTGCTCCTTTTAGAGATTGAGAA 59.065 40.000 0.00 0.00 35.82 2.87
640 641 6.597280 GTGTGCTCCTTTTAGAGATTGAGAAT 59.403 38.462 0.00 0.00 35.82 2.40
641 642 7.120432 GTGTGCTCCTTTTAGAGATTGAGAATT 59.880 37.037 0.00 0.00 35.82 2.17
642 643 7.667219 TGTGCTCCTTTTAGAGATTGAGAATTT 59.333 33.333 0.00 0.00 35.82 1.82
643 644 9.167311 GTGCTCCTTTTAGAGATTGAGAATTTA 57.833 33.333 0.00 0.00 35.82 1.40
644 645 9.388506 TGCTCCTTTTAGAGATTGAGAATTTAG 57.611 33.333 0.00 0.00 35.82 1.85
645 646 8.835439 GCTCCTTTTAGAGATTGAGAATTTAGG 58.165 37.037 0.00 0.00 35.82 2.69
646 647 9.336171 CTCCTTTTAGAGATTGAGAATTTAGGG 57.664 37.037 0.00 0.00 35.82 3.53
647 648 8.836735 TCCTTTTAGAGATTGAGAATTTAGGGT 58.163 33.333 0.00 0.00 0.00 4.34
648 649 9.467796 CCTTTTAGAGATTGAGAATTTAGGGTT 57.532 33.333 0.00 0.00 0.00 4.11
654 655 9.539194 AGAGATTGAGAATTTAGGGTTTGATTT 57.461 29.630 0.00 0.00 0.00 2.17
657 658 9.521503 GATTGAGAATTTAGGGTTTGATTTAGC 57.478 33.333 0.00 0.00 0.00 3.09
658 659 8.650143 TTGAGAATTTAGGGTTTGATTTAGCT 57.350 30.769 0.00 0.00 0.00 3.32
659 660 8.650143 TGAGAATTTAGGGTTTGATTTAGCTT 57.350 30.769 0.00 0.00 0.00 3.74
660 661 9.088987 TGAGAATTTAGGGTTTGATTTAGCTTT 57.911 29.630 0.00 0.00 0.00 3.51
661 662 9.574458 GAGAATTTAGGGTTTGATTTAGCTTTC 57.426 33.333 0.00 0.00 0.00 2.62
662 663 9.088987 AGAATTTAGGGTTTGATTTAGCTTTCA 57.911 29.630 0.00 0.00 0.00 2.69
663 664 9.140286 GAATTTAGGGTTTGATTTAGCTTTCAC 57.860 33.333 0.00 0.00 0.00 3.18
664 665 6.584185 TTAGGGTTTGATTTAGCTTTCACC 57.416 37.500 0.00 0.00 0.00 4.02
665 666 4.740902 AGGGTTTGATTTAGCTTTCACCT 58.259 39.130 0.00 0.00 0.00 4.00
666 667 5.887754 AGGGTTTGATTTAGCTTTCACCTA 58.112 37.500 0.00 0.00 0.00 3.08
667 668 5.710567 AGGGTTTGATTTAGCTTTCACCTAC 59.289 40.000 0.00 0.00 0.00 3.18
668 669 5.475564 GGGTTTGATTTAGCTTTCACCTACA 59.524 40.000 0.00 0.00 0.00 2.74
669 670 6.015772 GGGTTTGATTTAGCTTTCACCTACAA 60.016 38.462 0.00 0.00 0.00 2.41
670 671 7.430441 GGTTTGATTTAGCTTTCACCTACAAA 58.570 34.615 0.00 0.00 0.00 2.83
671 672 8.088365 GGTTTGATTTAGCTTTCACCTACAAAT 58.912 33.333 0.00 0.00 0.00 2.32
672 673 9.476202 GTTTGATTTAGCTTTCACCTACAAATT 57.524 29.630 0.00 0.00 0.00 1.82
673 674 9.474920 TTTGATTTAGCTTTCACCTACAAATTG 57.525 29.630 0.00 0.00 0.00 2.32
674 675 8.402798 TGATTTAGCTTTCACCTACAAATTGA 57.597 30.769 0.00 0.00 0.00 2.57
675 676 8.855110 TGATTTAGCTTTCACCTACAAATTGAA 58.145 29.630 0.00 0.00 0.00 2.69
676 677 9.346725 GATTTAGCTTTCACCTACAAATTGAAG 57.653 33.333 0.00 0.00 31.11 3.02
677 678 5.712152 AGCTTTCACCTACAAATTGAAGG 57.288 39.130 0.00 0.58 36.42 3.46
678 679 5.140454 AGCTTTCACCTACAAATTGAAGGT 58.860 37.500 0.00 1.70 44.54 3.50
679 680 5.598417 AGCTTTCACCTACAAATTGAAGGTT 59.402 36.000 0.00 0.00 41.75 3.50
680 681 6.098266 AGCTTTCACCTACAAATTGAAGGTTT 59.902 34.615 0.00 0.00 41.75 3.27
681 682 6.200854 GCTTTCACCTACAAATTGAAGGTTTG 59.799 38.462 0.00 0.00 41.75 2.93
683 684 6.783708 TCACCTACAAATTGAAGGTTTGTT 57.216 33.333 9.20 0.00 44.84 2.83
684 685 7.176589 TCACCTACAAATTGAAGGTTTGTTT 57.823 32.000 9.20 0.00 44.84 2.83
685 686 7.616313 TCACCTACAAATTGAAGGTTTGTTTT 58.384 30.769 9.20 0.00 44.84 2.43
686 687 7.547370 TCACCTACAAATTGAAGGTTTGTTTTG 59.453 33.333 9.20 5.49 44.84 2.44
687 688 6.821160 ACCTACAAATTGAAGGTTTGTTTTGG 59.179 34.615 9.20 11.04 44.84 3.28
688 689 7.044798 CCTACAAATTGAAGGTTTGTTTTGGA 58.955 34.615 9.20 0.00 44.84 3.53
689 690 6.735678 ACAAATTGAAGGTTTGTTTTGGAC 57.264 33.333 0.00 0.00 44.84 4.02
690 691 6.472016 ACAAATTGAAGGTTTGTTTTGGACT 58.528 32.000 0.00 0.00 44.84 3.85
691 692 6.939730 ACAAATTGAAGGTTTGTTTTGGACTT 59.060 30.769 0.00 0.00 44.84 3.01
692 693 7.446931 ACAAATTGAAGGTTTGTTTTGGACTTT 59.553 29.630 0.00 0.00 44.84 2.66
693 694 7.994425 AATTGAAGGTTTGTTTTGGACTTTT 57.006 28.000 0.00 0.00 0.00 2.27
694 695 7.994425 ATTGAAGGTTTGTTTTGGACTTTTT 57.006 28.000 0.00 0.00 0.00 1.94
695 696 7.428282 TTGAAGGTTTGTTTTGGACTTTTTC 57.572 32.000 0.00 0.00 0.00 2.29
696 697 5.935206 TGAAGGTTTGTTTTGGACTTTTTCC 59.065 36.000 0.00 0.00 46.13 3.13
851 853 2.766828 CCCTAGCTACTTGTAGCCAACT 59.233 50.000 23.99 11.79 43.81 3.16
852 854 3.181474 CCCTAGCTACTTGTAGCCAACTC 60.181 52.174 23.99 1.93 43.81 3.01
853 855 3.702045 CCTAGCTACTTGTAGCCAACTCT 59.298 47.826 23.99 10.89 43.81 3.24
1005 1007 2.554462 GACTCAGAATCGATCGATGGGA 59.446 50.000 29.99 23.58 34.70 4.37
1066 1074 4.512961 TCGATCATGGCGCACGCT 62.513 61.111 15.36 0.00 41.60 5.07
1134 1142 2.235016 CAGGAGCTAGCTCGGTTAGAT 58.765 52.381 32.78 13.34 43.59 1.98
1186 1194 3.506108 CCAGAGGAAATGCTGGCG 58.494 61.111 0.00 0.00 44.53 5.69
1214 1222 3.725740 ACGTTGTTACAAGAGTACGTTCG 59.274 43.478 6.38 2.59 36.20 3.95
1242 1250 0.249398 ACACGCTCATTACCCCAGTC 59.751 55.000 0.00 0.00 0.00 3.51
1276 1285 3.525199 AGCTACTCCCTCCATTCACAAAT 59.475 43.478 0.00 0.00 0.00 2.32
1277 1286 4.721776 AGCTACTCCCTCCATTCACAAATA 59.278 41.667 0.00 0.00 0.00 1.40
1278 1287 5.059833 GCTACTCCCTCCATTCACAAATAG 58.940 45.833 0.00 0.00 0.00 1.73
1425 2191 8.561738 AGACCGAAATGAGTTAATAAACACAT 57.438 30.769 0.00 0.00 45.27 3.21
1485 2251 1.691434 CTCCCTCCAGTCCAATAGAGC 59.309 57.143 0.00 0.00 0.00 4.09
1493 2259 3.243234 CCAGTCCAATAGAGCTACGTCAG 60.243 52.174 0.00 0.00 0.00 3.51
1501 2267 7.491372 TCCAATAGAGCTACGTCAGTTAATTTG 59.509 37.037 0.00 0.00 0.00 2.32
1504 2270 5.978814 AGAGCTACGTCAGTTAATTTGGAT 58.021 37.500 0.00 0.00 0.00 3.41
1506 2272 4.804139 AGCTACGTCAGTTAATTTGGATCG 59.196 41.667 0.00 0.00 0.00 3.69
1507 2273 4.802039 GCTACGTCAGTTAATTTGGATCGA 59.198 41.667 0.00 0.00 0.00 3.59
1514 2280 5.045869 TCAGTTAATTTGGATCGAAGGGAGT 60.046 40.000 0.00 0.00 0.00 3.85
1616 2382 7.449827 TGTGTTGAATAACGAACGAATGATAC 58.550 34.615 0.14 0.00 39.71 2.24
1683 2449 0.948678 GCCGTTTGTAAGCTTGTCCA 59.051 50.000 9.86 0.00 0.00 4.02
1716 2482 4.625972 AACACTACAACTCCAAAAACCG 57.374 40.909 0.00 0.00 0.00 4.44
1764 2532 1.408822 CCTAGCGGCTTCCCAATTCTT 60.409 52.381 8.26 0.00 0.00 2.52
1765 2533 1.672881 CTAGCGGCTTCCCAATTCTTG 59.327 52.381 8.26 0.00 0.00 3.02
1894 2666 4.517832 GGTATCAGTTTCAGGGAACGTTTT 59.482 41.667 0.46 0.00 34.74 2.43
1903 2675 2.888414 CAGGGAACGTTTTTGGTACCAT 59.112 45.455 17.17 0.00 0.00 3.55
1906 2678 3.068448 GGGAACGTTTTTGGTACCATGTT 59.932 43.478 17.17 14.80 0.00 2.71
1909 2681 2.223852 ACGTTTTTGGTACCATGTTGGC 60.224 45.455 17.17 3.70 42.67 4.52
1950 2846 1.773054 GCTGGCGCTGATGATGAGTG 61.773 60.000 7.64 0.00 0.00 3.51
2028 2924 5.185454 TCAAACATGCACCATCTTAGGTAG 58.815 41.667 0.00 0.00 40.77 3.18
2066 2962 5.723672 AGCTAACCGTGCTGTATATACAT 57.276 39.130 15.81 2.40 39.56 2.29
2067 2963 6.829229 AGCTAACCGTGCTGTATATACATA 57.171 37.500 15.81 6.02 39.56 2.29
2116 3012 6.798427 AGCTAATTCTCTGTATGTCCTTCA 57.202 37.500 0.00 0.00 0.00 3.02
2293 3189 1.625315 TGGCCGATTGATCCTATGAGG 59.375 52.381 0.00 0.00 36.46 3.86
2709 3607 2.647683 TGTATGCCTGTGTCAAACCA 57.352 45.000 0.00 0.00 0.00 3.67
2826 3724 7.102993 TGAACTATATCAACTGCAAAGCACTA 58.897 34.615 0.00 0.00 33.79 2.74
2932 3830 5.070313 ACATTTAGTCCATGGTGTTGCTTTT 59.930 36.000 12.58 0.00 0.00 2.27
2933 3831 4.846779 TTAGTCCATGGTGTTGCTTTTC 57.153 40.909 12.58 0.00 0.00 2.29
2934 3832 2.949447 AGTCCATGGTGTTGCTTTTCT 58.051 42.857 12.58 0.00 0.00 2.52
3070 3968 7.292356 AGTGGATATGTGGTCCAGTGATTTATA 59.708 37.037 0.00 0.00 45.41 0.98
3155 4053 6.179504 TGTCGACTCAGTTCAATACTACTC 57.820 41.667 17.92 0.00 34.56 2.59
3169 4067 9.584008 TTCAATACTACTCGGGATAAATACTCT 57.416 33.333 0.00 0.00 0.00 3.24
3172 4070 8.937207 ATACTACTCGGGATAAATACTCTGTT 57.063 34.615 0.00 0.00 0.00 3.16
3205 4103 8.729528 GTGAAACAAAACAAAACAAACTTGTTC 58.270 29.630 8.22 0.00 43.48 3.18
3248 4150 7.726291 TGTGAAATCTTGAAGTTAACCCCATAA 59.274 33.333 0.88 0.00 0.00 1.90
3261 4163 5.913946 AACCCCATAAAATTTTTGGACCA 57.086 34.783 22.90 0.00 31.94 4.02
3294 4196 9.868277 ACTTTTAACATCAAGTTGTTCAATTGA 57.132 25.926 3.38 3.38 41.50 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.089411 CAGTCATAGTCGTCTGTTGTAGTG 58.911 45.833 0.00 0.00 0.00 2.74
1 2 5.001874 TCAGTCATAGTCGTCTGTTGTAGT 58.998 41.667 0.00 0.00 0.00 2.73
2 3 5.106673 TGTCAGTCATAGTCGTCTGTTGTAG 60.107 44.000 0.00 0.00 0.00 2.74
3 4 4.758165 TGTCAGTCATAGTCGTCTGTTGTA 59.242 41.667 0.00 0.00 0.00 2.41
4 5 3.568430 TGTCAGTCATAGTCGTCTGTTGT 59.432 43.478 0.00 0.00 0.00 3.32
5 6 4.160736 TGTCAGTCATAGTCGTCTGTTG 57.839 45.455 0.00 0.00 0.00 3.33
6 7 6.125327 CTATGTCAGTCATAGTCGTCTGTT 57.875 41.667 6.53 0.00 46.39 3.16
7 8 5.743026 CTATGTCAGTCATAGTCGTCTGT 57.257 43.478 6.53 0.00 46.39 3.41
22 23 0.033503 TCGGGCCTCTGACTATGTCA 60.034 55.000 0.84 0.37 40.50 3.58
23 24 1.112113 TTCGGGCCTCTGACTATGTC 58.888 55.000 0.84 0.00 0.00 3.06
24 25 1.568504 TTTCGGGCCTCTGACTATGT 58.431 50.000 0.84 0.00 0.00 2.29
25 26 2.918712 ATTTCGGGCCTCTGACTATG 57.081 50.000 0.84 0.00 0.00 2.23
26 27 5.568620 AAATATTTCGGGCCTCTGACTAT 57.431 39.130 0.84 0.00 0.00 2.12
27 28 6.488769 TTAAATATTTCGGGCCTCTGACTA 57.511 37.500 3.39 0.00 0.00 2.59
28 29 3.933861 AAATATTTCGGGCCTCTGACT 57.066 42.857 0.84 0.00 0.00 3.41
29 30 5.763204 TGATTAAATATTTCGGGCCTCTGAC 59.237 40.000 3.39 0.00 0.00 3.51
30 31 5.935945 TGATTAAATATTTCGGGCCTCTGA 58.064 37.500 3.39 0.00 0.00 3.27
31 32 5.997746 TCTGATTAAATATTTCGGGCCTCTG 59.002 40.000 3.39 0.00 0.00 3.35
32 33 6.187727 TCTGATTAAATATTTCGGGCCTCT 57.812 37.500 3.39 0.00 0.00 3.69
33 34 6.877611 TTCTGATTAAATATTTCGGGCCTC 57.122 37.500 3.39 0.00 0.00 4.70
34 35 6.040504 GGTTTCTGATTAAATATTTCGGGCCT 59.959 38.462 3.39 0.00 0.00 5.19
35 36 6.183360 TGGTTTCTGATTAAATATTTCGGGCC 60.183 38.462 3.39 0.00 0.00 5.80
36 37 6.801575 TGGTTTCTGATTAAATATTTCGGGC 58.198 36.000 3.39 0.00 0.00 6.13
37 38 9.301153 CTTTGGTTTCTGATTAAATATTTCGGG 57.699 33.333 3.39 0.00 0.00 5.14
38 39 8.807581 GCTTTGGTTTCTGATTAAATATTTCGG 58.192 33.333 3.39 0.00 0.00 4.30
39 40 8.523464 CGCTTTGGTTTCTGATTAAATATTTCG 58.477 33.333 3.39 0.00 0.00 3.46
40 41 9.353999 ACGCTTTGGTTTCTGATTAAATATTTC 57.646 29.630 3.39 0.00 0.00 2.17
41 42 9.705290 AACGCTTTGGTTTCTGATTAAATATTT 57.295 25.926 5.89 5.89 0.00 1.40
42 43 9.139174 CAACGCTTTGGTTTCTGATTAAATATT 57.861 29.630 0.00 0.00 0.00 1.28
43 44 8.519526 TCAACGCTTTGGTTTCTGATTAAATAT 58.480 29.630 2.78 0.00 33.06 1.28
44 45 7.877003 TCAACGCTTTGGTTTCTGATTAAATA 58.123 30.769 2.78 0.00 33.06 1.40
45 46 6.744112 TCAACGCTTTGGTTTCTGATTAAAT 58.256 32.000 2.78 0.00 33.06 1.40
46 47 6.137794 TCAACGCTTTGGTTTCTGATTAAA 57.862 33.333 2.78 0.00 33.06 1.52
47 48 5.759506 TCAACGCTTTGGTTTCTGATTAA 57.240 34.783 2.78 0.00 33.06 1.40
48 49 5.298276 AGTTCAACGCTTTGGTTTCTGATTA 59.702 36.000 2.78 0.00 33.06 1.75
49 50 4.097892 AGTTCAACGCTTTGGTTTCTGATT 59.902 37.500 2.78 0.00 33.06 2.57
50 51 3.632145 AGTTCAACGCTTTGGTTTCTGAT 59.368 39.130 2.78 0.00 33.06 2.90
51 52 3.013921 AGTTCAACGCTTTGGTTTCTGA 58.986 40.909 2.78 0.00 33.06 3.27
52 53 3.420839 AGTTCAACGCTTTGGTTTCTG 57.579 42.857 2.78 0.00 33.06 3.02
53 54 4.173256 CAAAGTTCAACGCTTTGGTTTCT 58.827 39.130 2.78 0.00 45.23 2.52
54 55 4.499174 CAAAGTTCAACGCTTTGGTTTC 57.501 40.909 2.78 0.00 45.23 2.78
60 61 6.720012 AATGTTTTCAAAGTTCAACGCTTT 57.280 29.167 0.00 0.00 36.70 3.51
61 62 6.720012 AAATGTTTTCAAAGTTCAACGCTT 57.280 29.167 0.00 0.00 0.00 4.68
62 63 6.720012 AAAATGTTTTCAAAGTTCAACGCT 57.280 29.167 0.00 0.00 0.00 5.07
85 86 9.453325 CGTTTTTAATACTTGTTTGCCTCTAAA 57.547 29.630 0.00 0.00 0.00 1.85
86 87 8.623030 ACGTTTTTAATACTTGTTTGCCTCTAA 58.377 29.630 0.00 0.00 0.00 2.10
87 88 8.156994 ACGTTTTTAATACTTGTTTGCCTCTA 57.843 30.769 0.00 0.00 0.00 2.43
88 89 7.034685 ACGTTTTTAATACTTGTTTGCCTCT 57.965 32.000 0.00 0.00 0.00 3.69
89 90 8.959734 ATACGTTTTTAATACTTGTTTGCCTC 57.040 30.769 0.00 0.00 0.00 4.70
90 91 9.752961 AAATACGTTTTTAATACTTGTTTGCCT 57.247 25.926 1.90 0.00 0.00 4.75
125 126 9.906660 TCGCACTTTATAAAATGTTCAAAGATT 57.093 25.926 8.33 0.00 32.02 2.40
126 127 9.559958 CTCGCACTTTATAAAATGTTCAAAGAT 57.440 29.630 8.33 0.00 32.02 2.40
127 128 7.537306 GCTCGCACTTTATAAAATGTTCAAAGA 59.463 33.333 8.33 0.00 32.02 2.52
128 129 7.325821 TGCTCGCACTTTATAAAATGTTCAAAG 59.674 33.333 8.33 2.50 33.45 2.77
129 130 7.114247 GTGCTCGCACTTTATAAAATGTTCAAA 59.886 33.333 14.38 0.00 43.12 2.69
130 131 6.580791 GTGCTCGCACTTTATAAAATGTTCAA 59.419 34.615 14.38 0.00 43.12 2.69
131 132 6.083630 GTGCTCGCACTTTATAAAATGTTCA 58.916 36.000 14.38 0.07 43.12 3.18
132 133 6.540323 GTGCTCGCACTTTATAAAATGTTC 57.460 37.500 14.38 0.00 43.12 3.18
146 147 4.777140 AATTTTCAAAAAGTGCTCGCAC 57.223 36.364 13.86 13.86 46.50 5.34
147 148 4.026968 CGAAATTTTCAAAAAGTGCTCGCA 60.027 37.500 9.66 0.00 0.00 5.10
148 149 4.206200 TCGAAATTTTCAAAAAGTGCTCGC 59.794 37.500 9.66 0.00 0.00 5.03
149 150 5.455525 ACTCGAAATTTTCAAAAAGTGCTCG 59.544 36.000 9.66 4.34 0.00 5.03
150 151 6.812481 ACTCGAAATTTTCAAAAAGTGCTC 57.188 33.333 9.66 0.00 0.00 4.26
151 152 7.480810 AGTACTCGAAATTTTCAAAAAGTGCT 58.519 30.769 9.66 11.03 0.00 4.40
152 153 7.679659 AGTACTCGAAATTTTCAAAAAGTGC 57.320 32.000 9.66 9.37 0.00 4.40
180 181 6.148948 GCTTTTTCAAAGTTGTTGGCTTTTT 58.851 32.000 0.00 0.00 34.32 1.94
181 182 5.616645 CGCTTTTTCAAAGTTGTTGGCTTTT 60.617 36.000 0.00 0.00 34.32 2.27
182 183 4.142924 CGCTTTTTCAAAGTTGTTGGCTTT 60.143 37.500 0.00 0.00 36.70 3.51
183 184 3.370672 CGCTTTTTCAAAGTTGTTGGCTT 59.629 39.130 0.00 0.00 0.00 4.35
184 185 2.929398 CGCTTTTTCAAAGTTGTTGGCT 59.071 40.909 0.00 0.00 0.00 4.75
185 186 2.926838 TCGCTTTTTCAAAGTTGTTGGC 59.073 40.909 0.00 0.00 0.00 4.52
186 187 4.387256 TGTTCGCTTTTTCAAAGTTGTTGG 59.613 37.500 0.00 0.00 0.00 3.77
187 188 5.107683 TGTGTTCGCTTTTTCAAAGTTGTTG 60.108 36.000 0.00 0.00 0.00 3.33
188 189 4.985409 TGTGTTCGCTTTTTCAAAGTTGTT 59.015 33.333 0.00 0.00 0.00 2.83
189 190 4.551388 TGTGTTCGCTTTTTCAAAGTTGT 58.449 34.783 0.00 0.00 0.00 3.32
190 191 5.701029 ATGTGTTCGCTTTTTCAAAGTTG 57.299 34.783 0.00 0.00 0.00 3.16
191 192 6.720012 AAATGTGTTCGCTTTTTCAAAGTT 57.280 29.167 0.00 0.00 0.00 2.66
192 193 9.522804 TTATAAATGTGTTCGCTTTTTCAAAGT 57.477 25.926 0.00 0.00 0.00 2.66
195 196 9.302345 TGTTTATAAATGTGTTCGCTTTTTCAA 57.698 25.926 0.31 0.00 0.00 2.69
196 197 8.858003 TGTTTATAAATGTGTTCGCTTTTTCA 57.142 26.923 0.31 0.00 0.00 2.69
223 224 9.965824 TTTAAAATTTTGTTCAGGTTGCAAAAA 57.034 22.222 13.76 0.00 42.74 1.94
224 225 9.965824 TTTTAAAATTTTGTTCAGGTTGCAAAA 57.034 22.222 13.76 5.00 43.33 2.44
226 227 9.565213 CATTTTAAAATTTTGTTCAGGTTGCAA 57.435 25.926 13.76 0.00 0.00 4.08
227 228 7.699812 GCATTTTAAAATTTTGTTCAGGTTGCA 59.300 29.630 13.76 0.00 0.00 4.08
228 229 7.699812 TGCATTTTAAAATTTTGTTCAGGTTGC 59.300 29.630 13.76 8.65 0.00 4.17
229 230 9.565213 TTGCATTTTAAAATTTTGTTCAGGTTG 57.435 25.926 13.76 0.00 0.00 3.77
231 232 9.949174 GATTGCATTTTAAAATTTTGTTCAGGT 57.051 25.926 13.76 0.00 0.00 4.00
232 233 9.947669 TGATTGCATTTTAAAATTTTGTTCAGG 57.052 25.926 13.76 0.00 0.00 3.86
276 277 7.446001 AAATTTTGTTCAGGTTGCAGAAAAA 57.554 28.000 0.00 0.00 0.00 1.94
277 278 7.446001 AAAATTTTGTTCAGGTTGCAGAAAA 57.554 28.000 1.75 0.00 0.00 2.29
278 279 8.729805 ATAAAATTTTGTTCAGGTTGCAGAAA 57.270 26.923 13.76 0.00 0.00 2.52
279 280 9.474920 CTATAAAATTTTGTTCAGGTTGCAGAA 57.525 29.630 13.76 0.00 0.00 3.02
280 281 8.637986 ACTATAAAATTTTGTTCAGGTTGCAGA 58.362 29.630 13.76 0.00 0.00 4.26
281 282 8.702438 CACTATAAAATTTTGTTCAGGTTGCAG 58.298 33.333 13.76 0.95 0.00 4.41
282 283 8.200792 ACACTATAAAATTTTGTTCAGGTTGCA 58.799 29.630 13.76 0.00 0.00 4.08
283 284 8.487176 CACACTATAAAATTTTGTTCAGGTTGC 58.513 33.333 13.76 0.00 0.00 4.17
284 285 8.977505 CCACACTATAAAATTTTGTTCAGGTTG 58.022 33.333 13.76 4.32 0.00 3.77
285 286 8.919145 TCCACACTATAAAATTTTGTTCAGGTT 58.081 29.630 13.76 0.00 0.00 3.50
286 287 8.357402 GTCCACACTATAAAATTTTGTTCAGGT 58.643 33.333 13.76 2.52 0.00 4.00
287 288 8.356657 TGTCCACACTATAAAATTTTGTTCAGG 58.643 33.333 13.76 6.93 0.00 3.86
288 289 9.912634 ATGTCCACACTATAAAATTTTGTTCAG 57.087 29.630 13.76 4.98 0.00 3.02
391 392 9.862371 ACGCACACATTAAATATTTTTGGATAA 57.138 25.926 5.91 0.00 0.00 1.75
392 393 9.862371 AACGCACACATTAAATATTTTTGGATA 57.138 25.926 5.91 0.00 0.00 2.59
393 394 8.770438 AACGCACACATTAAATATTTTTGGAT 57.230 26.923 5.91 0.00 0.00 3.41
394 395 9.692749 TTAACGCACACATTAAATATTTTTGGA 57.307 25.926 5.91 0.00 0.00 3.53
403 404 9.464714 TGTACATTTTTAACGCACACATTAAAT 57.535 25.926 0.00 0.00 31.98 1.40
404 405 8.851960 TGTACATTTTTAACGCACACATTAAA 57.148 26.923 0.00 0.00 0.00 1.52
405 406 9.464714 AATGTACATTTTTAACGCACACATTAA 57.535 25.926 15.47 0.00 33.59 1.40
406 407 8.906693 CAATGTACATTTTTAACGCACACATTA 58.093 29.630 18.50 0.00 33.59 1.90
407 408 7.095857 CCAATGTACATTTTTAACGCACACATT 60.096 33.333 18.50 0.00 35.17 2.71
408 409 6.364706 CCAATGTACATTTTTAACGCACACAT 59.635 34.615 18.50 0.00 0.00 3.21
409 410 5.687730 CCAATGTACATTTTTAACGCACACA 59.312 36.000 18.50 0.00 0.00 3.72
410 411 5.117897 CCCAATGTACATTTTTAACGCACAC 59.882 40.000 18.50 0.00 0.00 3.82
411 412 5.221263 ACCCAATGTACATTTTTAACGCACA 60.221 36.000 18.50 0.00 0.00 4.57
412 413 5.224135 ACCCAATGTACATTTTTAACGCAC 58.776 37.500 18.50 0.00 0.00 5.34
413 414 5.455056 ACCCAATGTACATTTTTAACGCA 57.545 34.783 18.50 0.00 0.00 5.24
427 428 9.747898 TGTCTAAATTTTATCAGTACCCAATGT 57.252 29.630 0.00 0.00 0.00 2.71
430 431 9.747898 ACATGTCTAAATTTTATCAGTACCCAA 57.252 29.630 0.00 0.00 0.00 4.12
492 493 9.384764 GCACTAATCTGGTTATTCTTAGTTTCT 57.615 33.333 0.00 0.00 31.94 2.52
493 494 8.328864 CGCACTAATCTGGTTATTCTTAGTTTC 58.671 37.037 0.00 0.00 31.94 2.78
494 495 7.822822 ACGCACTAATCTGGTTATTCTTAGTTT 59.177 33.333 0.00 0.00 31.94 2.66
495 496 7.277981 CACGCACTAATCTGGTTATTCTTAGTT 59.722 37.037 0.00 0.00 31.94 2.24
496 497 6.757010 CACGCACTAATCTGGTTATTCTTAGT 59.243 38.462 0.00 0.00 33.97 2.24
497 498 6.757010 ACACGCACTAATCTGGTTATTCTTAG 59.243 38.462 0.00 0.00 0.00 2.18
498 499 6.533723 CACACGCACTAATCTGGTTATTCTTA 59.466 38.462 0.00 0.00 0.00 2.10
499 500 5.351465 CACACGCACTAATCTGGTTATTCTT 59.649 40.000 0.00 0.00 0.00 2.52
500 501 4.870426 CACACGCACTAATCTGGTTATTCT 59.130 41.667 0.00 0.00 0.00 2.40
501 502 4.494199 GCACACGCACTAATCTGGTTATTC 60.494 45.833 0.00 0.00 38.36 1.75
502 503 3.374058 GCACACGCACTAATCTGGTTATT 59.626 43.478 0.00 0.00 38.36 1.40
503 504 2.936498 GCACACGCACTAATCTGGTTAT 59.064 45.455 0.00 0.00 38.36 1.89
504 505 2.343101 GCACACGCACTAATCTGGTTA 58.657 47.619 0.00 0.00 38.36 2.85
505 506 1.156736 GCACACGCACTAATCTGGTT 58.843 50.000 0.00 0.00 38.36 3.67
506 507 1.014044 CGCACACGCACTAATCTGGT 61.014 55.000 0.00 0.00 38.40 4.00
507 508 1.014044 ACGCACACGCACTAATCTGG 61.014 55.000 0.00 0.00 45.53 3.86
508 509 0.093535 CACGCACACGCACTAATCTG 59.906 55.000 0.00 0.00 45.53 2.90
509 510 0.038618 TCACGCACACGCACTAATCT 60.039 50.000 0.00 0.00 45.53 2.40
510 511 0.366871 CTCACGCACACGCACTAATC 59.633 55.000 0.00 0.00 45.53 1.75
511 512 0.319555 ACTCACGCACACGCACTAAT 60.320 50.000 0.00 0.00 45.53 1.73
512 513 0.311477 TACTCACGCACACGCACTAA 59.689 50.000 0.00 0.00 45.53 2.24
513 514 0.311477 TTACTCACGCACACGCACTA 59.689 50.000 0.00 0.00 45.53 2.74
514 515 1.066752 TTACTCACGCACACGCACT 59.933 52.632 0.00 0.00 45.53 4.40
515 516 1.200839 GTTACTCACGCACACGCAC 59.799 57.895 0.00 0.00 45.53 5.34
516 517 1.066752 AGTTACTCACGCACACGCA 59.933 52.632 0.00 0.00 45.53 5.24
517 518 1.487231 CAGTTACTCACGCACACGC 59.513 57.895 0.00 0.00 45.53 5.34
519 520 1.487231 CGCAGTTACTCACGCACAC 59.513 57.895 0.00 0.00 0.00 3.82
520 521 3.930838 CGCAGTTACTCACGCACA 58.069 55.556 0.00 0.00 0.00 4.57
529 530 1.814169 GGCCCAGTAGCGCAGTTAC 60.814 63.158 11.47 3.24 44.69 2.50
530 531 2.582436 GGCCCAGTAGCGCAGTTA 59.418 61.111 11.47 0.00 0.00 2.24
531 532 4.760047 CGGCCCAGTAGCGCAGTT 62.760 66.667 11.47 0.00 0.00 3.16
537 538 2.339275 AATTAGGCCGGCCCAGTAGC 62.339 60.000 41.72 15.73 36.58 3.58
538 539 0.250338 GAATTAGGCCGGCCCAGTAG 60.250 60.000 41.72 0.00 36.58 2.57
539 540 0.983905 TGAATTAGGCCGGCCCAGTA 60.984 55.000 41.72 25.16 36.58 2.74
540 541 2.270874 CTGAATTAGGCCGGCCCAGT 62.271 60.000 41.72 28.15 36.58 4.00
541 542 1.526917 CTGAATTAGGCCGGCCCAG 60.527 63.158 41.72 33.53 36.58 4.45
542 543 2.595095 CTGAATTAGGCCGGCCCA 59.405 61.111 41.72 28.47 36.58 5.36
543 544 2.907407 GCTGAATTAGGCCGGCCC 60.907 66.667 41.72 26.08 36.58 5.80
544 545 1.319614 TTTGCTGAATTAGGCCGGCC 61.320 55.000 39.29 39.29 33.91 6.13
545 546 0.746659 ATTTGCTGAATTAGGCCGGC 59.253 50.000 21.18 21.18 35.34 6.13
546 547 1.338020 GGATTTGCTGAATTAGGCCGG 59.662 52.381 0.00 0.00 0.00 6.13
547 548 1.338020 GGGATTTGCTGAATTAGGCCG 59.662 52.381 0.00 0.00 0.00 6.13
548 549 1.338020 CGGGATTTGCTGAATTAGGCC 59.662 52.381 0.00 0.00 0.00 5.19
549 550 1.338020 CCGGGATTTGCTGAATTAGGC 59.662 52.381 0.00 0.00 0.00 3.93
550 551 1.338020 GCCGGGATTTGCTGAATTAGG 59.662 52.381 2.18 0.00 0.00 2.69
551 552 2.301346 AGCCGGGATTTGCTGAATTAG 58.699 47.619 2.18 0.00 36.23 1.73
552 553 2.435372 AGCCGGGATTTGCTGAATTA 57.565 45.000 2.18 0.00 36.23 1.40
553 554 2.301346 CTAGCCGGGATTTGCTGAATT 58.699 47.619 2.18 0.00 38.52 2.17
554 555 1.477558 CCTAGCCGGGATTTGCTGAAT 60.478 52.381 2.18 0.00 38.52 2.57
555 556 0.107214 CCTAGCCGGGATTTGCTGAA 60.107 55.000 2.18 0.00 38.52 3.02
556 557 1.271840 ACCTAGCCGGGATTTGCTGA 61.272 55.000 2.18 0.00 38.52 4.26
557 558 0.815615 GACCTAGCCGGGATTTGCTG 60.816 60.000 2.18 0.00 38.52 4.41
558 559 1.271840 TGACCTAGCCGGGATTTGCT 61.272 55.000 2.18 0.00 41.57 3.91
559 560 0.179018 ATGACCTAGCCGGGATTTGC 60.179 55.000 2.18 0.00 36.97 3.68
560 561 1.134098 ACATGACCTAGCCGGGATTTG 60.134 52.381 2.18 0.00 36.97 2.32
561 562 1.141053 GACATGACCTAGCCGGGATTT 59.859 52.381 2.18 0.00 36.97 2.17
562 563 0.759346 GACATGACCTAGCCGGGATT 59.241 55.000 2.18 0.00 36.97 3.01
563 564 0.398522 TGACATGACCTAGCCGGGAT 60.399 55.000 2.18 0.00 36.97 3.85
564 565 0.616395 TTGACATGACCTAGCCGGGA 60.616 55.000 2.18 0.00 36.97 5.14
565 566 0.179073 CTTGACATGACCTAGCCGGG 60.179 60.000 2.18 0.00 36.97 5.73
566 567 0.179073 CCTTGACATGACCTAGCCGG 60.179 60.000 0.00 0.00 39.35 6.13
567 568 0.537188 ACCTTGACATGACCTAGCCG 59.463 55.000 0.00 0.00 0.00 5.52
568 569 2.789409 AACCTTGACATGACCTAGCC 57.211 50.000 0.00 0.00 0.00 3.93
569 570 6.569179 TTTTAAACCTTGACATGACCTAGC 57.431 37.500 0.00 0.00 0.00 3.42
570 571 9.667107 TCTATTTTAAACCTTGACATGACCTAG 57.333 33.333 0.00 0.00 0.00 3.02
571 572 9.444600 GTCTATTTTAAACCTTGACATGACCTA 57.555 33.333 0.00 0.00 0.00 3.08
572 573 7.393515 GGTCTATTTTAAACCTTGACATGACCT 59.606 37.037 0.00 0.00 35.99 3.85
573 574 7.175990 TGGTCTATTTTAAACCTTGACATGACC 59.824 37.037 0.00 0.00 38.42 4.02
574 575 8.106247 TGGTCTATTTTAAACCTTGACATGAC 57.894 34.615 0.00 0.00 34.05 3.06
575 576 7.393234 CCTGGTCTATTTTAAACCTTGACATGA 59.607 37.037 0.00 0.00 34.05 3.07
576 577 7.393234 TCCTGGTCTATTTTAAACCTTGACATG 59.607 37.037 11.15 0.00 34.05 3.21
577 578 7.466804 TCCTGGTCTATTTTAAACCTTGACAT 58.533 34.615 11.15 0.00 34.05 3.06
578 579 6.843752 TCCTGGTCTATTTTAAACCTTGACA 58.156 36.000 11.15 0.00 34.05 3.58
579 580 7.939784 ATCCTGGTCTATTTTAAACCTTGAC 57.060 36.000 0.00 0.00 34.05 3.18
580 581 9.681062 CTAATCCTGGTCTATTTTAAACCTTGA 57.319 33.333 0.00 0.00 34.05 3.02
581 582 9.681062 TCTAATCCTGGTCTATTTTAAACCTTG 57.319 33.333 0.00 0.00 34.05 3.61
582 583 9.907229 CTCTAATCCTGGTCTATTTTAAACCTT 57.093 33.333 0.00 0.00 34.05 3.50
583 584 9.280456 TCTCTAATCCTGGTCTATTTTAAACCT 57.720 33.333 0.00 0.00 34.05 3.50
584 585 9.549078 CTCTCTAATCCTGGTCTATTTTAAACC 57.451 37.037 0.00 0.00 0.00 3.27
589 590 8.049721 CCAAACTCTCTAATCCTGGTCTATTTT 58.950 37.037 0.00 0.00 0.00 1.82
590 591 7.182930 ACCAAACTCTCTAATCCTGGTCTATTT 59.817 37.037 0.00 0.00 29.76 1.40
591 592 6.674419 ACCAAACTCTCTAATCCTGGTCTATT 59.326 38.462 0.00 0.00 29.76 1.73
592 593 6.098982 CACCAAACTCTCTAATCCTGGTCTAT 59.901 42.308 0.00 0.00 33.46 1.98
593 594 5.422331 CACCAAACTCTCTAATCCTGGTCTA 59.578 44.000 0.00 0.00 33.46 2.59
594 595 4.223923 CACCAAACTCTCTAATCCTGGTCT 59.776 45.833 0.00 0.00 33.46 3.85
595 596 4.020128 ACACCAAACTCTCTAATCCTGGTC 60.020 45.833 0.00 0.00 33.46 4.02
596 597 3.910627 ACACCAAACTCTCTAATCCTGGT 59.089 43.478 0.00 0.00 36.12 4.00
597 598 4.256920 CACACCAAACTCTCTAATCCTGG 58.743 47.826 0.00 0.00 0.00 4.45
598 599 3.686726 GCACACCAAACTCTCTAATCCTG 59.313 47.826 0.00 0.00 0.00 3.86
599 600 3.584848 AGCACACCAAACTCTCTAATCCT 59.415 43.478 0.00 0.00 0.00 3.24
600 601 3.935828 GAGCACACCAAACTCTCTAATCC 59.064 47.826 0.00 0.00 0.00 3.01
601 602 3.935828 GGAGCACACCAAACTCTCTAATC 59.064 47.826 0.00 0.00 0.00 1.75
602 603 3.584848 AGGAGCACACCAAACTCTCTAAT 59.415 43.478 0.00 0.00 0.00 1.73
603 604 2.972713 AGGAGCACACCAAACTCTCTAA 59.027 45.455 0.00 0.00 0.00 2.10
604 605 2.609747 AGGAGCACACCAAACTCTCTA 58.390 47.619 0.00 0.00 0.00 2.43
605 606 1.428869 AGGAGCACACCAAACTCTCT 58.571 50.000 0.00 0.00 0.00 3.10
606 607 2.262423 AAGGAGCACACCAAACTCTC 57.738 50.000 0.00 0.00 0.00 3.20
607 608 2.736670 AAAGGAGCACACCAAACTCT 57.263 45.000 0.00 0.00 0.00 3.24
608 609 4.134563 TCTAAAAGGAGCACACCAAACTC 58.865 43.478 0.00 0.00 0.00 3.01
609 610 4.137543 CTCTAAAAGGAGCACACCAAACT 58.862 43.478 0.00 0.00 0.00 2.66
610 611 4.134563 TCTCTAAAAGGAGCACACCAAAC 58.865 43.478 0.00 0.00 33.70 2.93
611 612 4.431416 TCTCTAAAAGGAGCACACCAAA 57.569 40.909 0.00 0.00 33.70 3.28
612 613 4.640771 ATCTCTAAAAGGAGCACACCAA 57.359 40.909 0.00 0.00 33.70 3.67
613 614 4.041567 TCAATCTCTAAAAGGAGCACACCA 59.958 41.667 0.00 0.00 33.70 4.17
614 615 4.579869 TCAATCTCTAAAAGGAGCACACC 58.420 43.478 0.00 0.00 33.70 4.16
615 616 5.482908 TCTCAATCTCTAAAAGGAGCACAC 58.517 41.667 0.00 0.00 33.70 3.82
616 617 5.745312 TCTCAATCTCTAAAAGGAGCACA 57.255 39.130 0.00 0.00 33.70 4.57
617 618 7.622893 AATTCTCAATCTCTAAAAGGAGCAC 57.377 36.000 0.00 0.00 33.70 4.40
618 619 9.388506 CTAAATTCTCAATCTCTAAAAGGAGCA 57.611 33.333 0.00 0.00 33.70 4.26
619 620 8.835439 CCTAAATTCTCAATCTCTAAAAGGAGC 58.165 37.037 0.00 0.00 33.70 4.70
620 621 9.336171 CCCTAAATTCTCAATCTCTAAAAGGAG 57.664 37.037 0.00 0.00 34.88 3.69
621 622 8.836735 ACCCTAAATTCTCAATCTCTAAAAGGA 58.163 33.333 0.00 0.00 0.00 3.36
622 623 9.467796 AACCCTAAATTCTCAATCTCTAAAAGG 57.532 33.333 0.00 0.00 0.00 3.11
628 629 9.539194 AAATCAAACCCTAAATTCTCAATCTCT 57.461 29.630 0.00 0.00 0.00 3.10
631 632 9.521503 GCTAAATCAAACCCTAAATTCTCAATC 57.478 33.333 0.00 0.00 0.00 2.67
632 633 9.259832 AGCTAAATCAAACCCTAAATTCTCAAT 57.740 29.630 0.00 0.00 0.00 2.57
633 634 8.650143 AGCTAAATCAAACCCTAAATTCTCAA 57.350 30.769 0.00 0.00 0.00 3.02
634 635 8.650143 AAGCTAAATCAAACCCTAAATTCTCA 57.350 30.769 0.00 0.00 0.00 3.27
635 636 9.574458 GAAAGCTAAATCAAACCCTAAATTCTC 57.426 33.333 0.00 0.00 0.00 2.87
636 637 9.088987 TGAAAGCTAAATCAAACCCTAAATTCT 57.911 29.630 0.00 0.00 0.00 2.40
637 638 9.140286 GTGAAAGCTAAATCAAACCCTAAATTC 57.860 33.333 0.00 0.00 0.00 2.17
638 639 8.094548 GGTGAAAGCTAAATCAAACCCTAAATT 58.905 33.333 0.00 0.00 0.00 1.82
639 640 7.611770 GGTGAAAGCTAAATCAAACCCTAAAT 58.388 34.615 0.00 0.00 0.00 1.40
640 641 6.988522 GGTGAAAGCTAAATCAAACCCTAAA 58.011 36.000 0.00 0.00 0.00 1.85
641 642 6.584185 GGTGAAAGCTAAATCAAACCCTAA 57.416 37.500 0.00 0.00 0.00 2.69
654 655 6.775629 AACCTTCAATTTGTAGGTGAAAGCTA 59.224 34.615 23.47 0.00 45.68 3.32
655 656 5.140454 ACCTTCAATTTGTAGGTGAAAGCT 58.860 37.500 22.49 1.13 44.87 3.74
656 657 5.453567 ACCTTCAATTTGTAGGTGAAAGC 57.546 39.130 22.49 0.00 44.87 3.51
657 658 7.264947 ACAAACCTTCAATTTGTAGGTGAAAG 58.735 34.615 23.47 16.56 45.68 2.62
658 659 7.176589 ACAAACCTTCAATTTGTAGGTGAAA 57.823 32.000 23.47 0.00 45.68 2.69
659 660 6.783708 ACAAACCTTCAATTTGTAGGTGAA 57.216 33.333 23.47 0.00 45.68 3.18
660 661 6.783708 AACAAACCTTCAATTTGTAGGTGA 57.216 33.333 23.47 0.00 45.68 4.02
661 662 7.201600 CCAAAACAAACCTTCAATTTGTAGGTG 60.202 37.037 23.47 16.11 45.68 4.00
663 664 7.011016 GTCCAAAACAAACCTTCAATTTGTAGG 59.989 37.037 17.69 17.69 46.88 3.18
664 665 7.763985 AGTCCAAAACAAACCTTCAATTTGTAG 59.236 33.333 3.72 0.00 46.88 2.74
665 666 7.616313 AGTCCAAAACAAACCTTCAATTTGTA 58.384 30.769 3.72 0.00 46.88 2.41
667 668 6.983474 AGTCCAAAACAAACCTTCAATTTG 57.017 33.333 0.00 0.00 41.81 2.32
668 669 7.994425 AAAGTCCAAAACAAACCTTCAATTT 57.006 28.000 0.00 0.00 0.00 1.82
669 670 7.994425 AAAAGTCCAAAACAAACCTTCAATT 57.006 28.000 0.00 0.00 0.00 2.32
670 671 7.120579 GGAAAAAGTCCAAAACAAACCTTCAAT 59.879 33.333 0.00 0.00 46.97 2.57
671 672 6.428465 GGAAAAAGTCCAAAACAAACCTTCAA 59.572 34.615 0.00 0.00 46.97 2.69
672 673 5.935206 GGAAAAAGTCCAAAACAAACCTTCA 59.065 36.000 0.00 0.00 46.97 3.02
673 674 6.417191 GGAAAAAGTCCAAAACAAACCTTC 57.583 37.500 0.00 0.00 46.97 3.46
714 715 5.410746 ACGTCTCTGTCTATCGTTGTTTCTA 59.589 40.000 0.00 0.00 0.00 2.10
715 716 4.215827 ACGTCTCTGTCTATCGTTGTTTCT 59.784 41.667 0.00 0.00 0.00 2.52
716 717 4.474113 ACGTCTCTGTCTATCGTTGTTTC 58.526 43.478 0.00 0.00 0.00 2.78
717 718 4.500603 ACGTCTCTGTCTATCGTTGTTT 57.499 40.909 0.00 0.00 0.00 2.83
722 723 4.512198 CCTATGAACGTCTCTGTCTATCGT 59.488 45.833 0.00 0.00 36.31 3.73
797 798 3.459145 GGAAGGAGAAGATAAAGCCGAC 58.541 50.000 0.00 0.00 0.00 4.79
851 853 5.424252 ACTCACGGATACCCTGAATTAAAGA 59.576 40.000 0.00 0.00 0.00 2.52
852 854 5.523916 CACTCACGGATACCCTGAATTAAAG 59.476 44.000 0.00 0.00 0.00 1.85
853 855 5.424757 CACTCACGGATACCCTGAATTAAA 58.575 41.667 0.00 0.00 0.00 1.52
944 946 1.605738 ACGCGTTAGGGACAGAGGT 60.606 57.895 5.58 0.00 0.00 3.85
1005 1007 1.118838 CAGCCGAAGAGAGGAAGGAT 58.881 55.000 0.00 0.00 0.00 3.24
1050 1058 3.993234 GAGCGTGCGCCATGATCG 61.993 66.667 13.21 0.00 43.17 3.69
1066 1074 0.937441 ATGGTAGGAGAGCAGAGGGA 59.063 55.000 0.00 0.00 39.39 4.20
1186 1194 0.535553 TCTTGTAACAACGTGGGGCC 60.536 55.000 0.00 0.00 0.00 5.80
1214 1222 3.243334 GGTAATGAGCGTGTAGGTAGGAC 60.243 52.174 0.00 0.00 0.00 3.85
1473 2239 3.622630 ACTGACGTAGCTCTATTGGACT 58.377 45.455 0.00 0.00 0.00 3.85
1474 2240 4.373348 AACTGACGTAGCTCTATTGGAC 57.627 45.455 0.00 0.00 0.00 4.02
1485 2251 6.019801 CCTTCGATCCAAATTAACTGACGTAG 60.020 42.308 0.00 0.00 0.00 3.51
1493 2259 6.346896 ACTACTCCCTTCGATCCAAATTAAC 58.653 40.000 0.00 0.00 0.00 2.01
1501 2267 4.205587 TGTTCTACTACTCCCTTCGATCC 58.794 47.826 0.00 0.00 0.00 3.36
1504 2270 5.113446 AGATGTTCTACTACTCCCTTCGA 57.887 43.478 0.00 0.00 0.00 3.71
1584 2350 8.868744 TCGTTCGTTATTCAACACAATTATTC 57.131 30.769 0.00 0.00 34.05 1.75
1587 2353 8.496751 TCATTCGTTCGTTATTCAACACAATTA 58.503 29.630 0.00 0.00 34.05 1.40
1596 2362 6.913673 TGATCGTATCATTCGTTCGTTATTCA 59.086 34.615 0.00 0.00 33.59 2.57
1683 2449 0.602905 GTAGTGTTTGAGGGCGCAGT 60.603 55.000 10.83 0.00 0.00 4.40
1716 2482 2.235650 GAGTTGTTGGGAGTACCTACCC 59.764 54.545 3.30 11.89 43.32 3.69
1764 2532 3.024547 AGAGGATCGAAACCGAAGATCA 58.975 45.455 0.00 0.00 42.67 2.92
1765 2533 3.719173 AGAGGATCGAAACCGAAGATC 57.281 47.619 0.00 0.00 42.67 2.75
1894 2666 2.890311 CAAGAAGCCAACATGGTACCAA 59.110 45.455 20.76 2.16 40.46 3.67
1903 2675 3.659092 CGCGCCAAGAAGCCAACA 61.659 61.111 0.00 0.00 0.00 3.33
2028 2924 5.408604 CGGTTAGCTGGTATGGTTGATTATC 59.591 44.000 0.00 0.00 0.00 1.75
2116 3012 5.291128 CGGCTTTTCTGTCGACATAAATAGT 59.709 40.000 24.30 0.00 37.20 2.12
2208 3104 1.339610 CCTTTCCACACGCAAATTCCA 59.660 47.619 0.00 0.00 0.00 3.53
2293 3189 1.490693 CCTACGTCCGTGATGCATGC 61.491 60.000 11.82 11.82 0.00 4.06
2389 3287 1.893808 CCTGTGCACGGTGAAGCTT 60.894 57.895 23.77 0.00 0.00 3.74
2491 3389 2.620115 GGTCAGCATATGGATTGTGGTG 59.380 50.000 4.56 0.00 41.36 4.17
2709 3607 5.281314 ACCTGGTAGAGGACAACTATCATT 58.719 41.667 0.00 0.00 46.33 2.57
2826 3724 6.238842 GGCAAGTGCATATTCATCATTACACT 60.239 38.462 5.52 0.00 44.36 3.55
2915 3813 3.733443 AAGAAAAGCAACACCATGGAC 57.267 42.857 21.47 1.94 0.00 4.02
2953 3851 2.448726 GCAAGTTGCGAGCAGATTAG 57.551 50.000 12.95 0.00 31.71 1.73
3055 3953 9.490379 AGTCGATAAAATATAAATCACTGGACC 57.510 33.333 0.00 0.00 0.00 4.46
3106 4004 6.587226 TGTCAAAGCAAGAATCACAAATATGC 59.413 34.615 0.00 0.00 0.00 3.14
3124 4022 4.051237 TGAACTGAGTCGACATGTCAAAG 58.949 43.478 24.93 15.35 0.00 2.77
3155 4053 7.962918 CACAAAGAAAACAGAGTATTTATCCCG 59.037 37.037 0.00 0.00 0.00 5.14
3194 4092 6.924111 ACAGAACAATGAAGAACAAGTTTGT 58.076 32.000 0.00 0.00 44.72 2.83
3195 4093 7.816945 AACAGAACAATGAAGAACAAGTTTG 57.183 32.000 0.00 0.00 33.32 2.93
3196 4094 8.739972 AGTAACAGAACAATGAAGAACAAGTTT 58.260 29.630 0.00 0.00 33.32 2.66
3197 4095 8.184192 CAGTAACAGAACAATGAAGAACAAGTT 58.816 33.333 0.00 0.00 34.93 2.66
3198 4096 7.336931 ACAGTAACAGAACAATGAAGAACAAGT 59.663 33.333 0.00 0.00 0.00 3.16
3203 4101 7.857734 TTCACAGTAACAGAACAATGAAGAA 57.142 32.000 0.00 0.00 0.00 2.52
3205 4103 8.562892 AGATTTCACAGTAACAGAACAATGAAG 58.437 33.333 0.00 0.00 31.31 3.02
3208 4106 8.344831 TCAAGATTTCACAGTAACAGAACAATG 58.655 33.333 0.00 0.00 0.00 2.82
3251 4153 9.774413 TGTTAAAAGTTAAAACTGGTCCAAAAA 57.226 25.926 0.00 0.00 39.66 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.