Multiple sequence alignment - TraesCS4D01G253100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G253100 chr4D 100.000 5011 0 0 2507 7517 421892699 421897709 0.000000e+00 9254.0
1 TraesCS4D01G253100 chr4D 100.000 2277 0 0 1 2277 421890193 421892469 0.000000e+00 4205.0
2 TraesCS4D01G253100 chr4A 94.500 3673 132 30 2508 6156 42125920 42122294 0.000000e+00 5600.0
3 TraesCS4D01G253100 chr4A 91.934 843 43 11 1311 2143 42126744 42125917 0.000000e+00 1157.0
4 TraesCS4D01G253100 chr4A 91.449 573 31 10 6559 7128 42121979 42121422 0.000000e+00 771.0
5 TraesCS4D01G253100 chr4A 93.720 414 15 5 7113 7517 42121407 42120996 1.790000e-170 610.0
6 TraesCS4D01G253100 chr4A 89.904 416 9 16 798 1181 42127392 42126978 8.700000e-139 505.0
7 TraesCS4D01G253100 chr4A 96.970 231 6 1 6325 6554 42122300 42122070 3.290000e-103 387.0
8 TraesCS4D01G253100 chr4A 94.054 185 8 3 6156 6340 16845355 16845174 2.070000e-70 278.0
9 TraesCS4D01G253100 chr4A 92.647 136 8 2 2144 2277 705704931 705704796 2.140000e-45 195.0
10 TraesCS4D01G253100 chr4B 95.351 1936 67 6 4226 6156 518874588 518876505 0.000000e+00 3055.0
11 TraesCS4D01G253100 chr4B 93.824 1360 59 12 798 2143 518871231 518872579 0.000000e+00 2023.0
12 TraesCS4D01G253100 chr4B 92.308 1261 41 23 2508 3758 518872576 518873790 0.000000e+00 1740.0
13 TraesCS4D01G253100 chr4B 95.968 620 19 4 3630 4244 518873789 518874407 0.000000e+00 1002.0
14 TraesCS4D01G253100 chr4B 96.154 338 13 0 6325 6662 518876499 518876836 3.070000e-153 553.0
15 TraesCS4D01G253100 chr4B 93.834 373 14 3 7085 7451 518876828 518877197 3.070000e-153 553.0
16 TraesCS4D01G253100 chr4B 92.157 102 6 1 7416 7517 518877197 518877296 7.860000e-30 143.0
17 TraesCS4D01G253100 chr6D 84.442 797 101 16 1 774 412771123 412770327 0.000000e+00 763.0
18 TraesCS4D01G253100 chr6D 82.329 730 92 27 27 727 46012057 46012778 3.880000e-167 599.0
19 TraesCS4D01G253100 chr7D 83.979 774 98 13 24 774 21094984 21095754 0.000000e+00 719.0
20 TraesCS4D01G253100 chr7D 85.007 687 91 10 1 680 6000910 6001591 0.000000e+00 688.0
21 TraesCS4D01G253100 chr7D 85.581 430 51 5 6663 7084 45815249 45814823 2.490000e-119 440.0
22 TraesCS4D01G253100 chr6A 85.196 689 93 8 1 684 567940035 567940719 0.000000e+00 699.0
23 TraesCS4D01G253100 chr6A 83.411 428 61 8 6662 7083 582085904 582085481 9.150000e-104 388.0
24 TraesCS4D01G253100 chr5D 85.586 666 91 4 15 676 504022952 504022288 0.000000e+00 693.0
25 TraesCS4D01G253100 chr5D 96.739 184 5 1 6156 6338 483269317 483269500 9.480000e-79 305.0
26 TraesCS4D01G253100 chr5D 92.701 137 8 2 2143 2277 114009390 114009526 5.950000e-46 196.0
27 TraesCS4D01G253100 chr5D 91.603 131 11 0 2147 2277 256755100 256755230 1.670000e-41 182.0
28 TraesCS4D01G253100 chr5D 93.333 45 3 0 7092 7136 503501980 503502024 4.870000e-07 67.6
29 TraesCS4D01G253100 chr2D 86.473 621 77 6 1 619 356729559 356730174 0.000000e+00 675.0
30 TraesCS4D01G253100 chr2D 96.196 184 3 4 6156 6338 30487795 30487615 1.590000e-76 298.0
31 TraesCS4D01G253100 chr3D 82.166 785 126 13 2 774 37524090 37523308 0.000000e+00 662.0
32 TraesCS4D01G253100 chr3D 85.211 426 55 7 6659 7084 570565864 570566281 1.500000e-116 431.0
33 TraesCS4D01G253100 chr3D 82.336 351 55 5 6713 7060 354272816 354272470 1.590000e-76 298.0
34 TraesCS4D01G253100 chr3D 95.918 49 1 1 7092 7140 26450390 26450343 2.250000e-10 78.7
35 TraesCS4D01G253100 chr1B 84.425 687 88 13 1 684 59189141 59189811 0.000000e+00 658.0
36 TraesCS4D01G253100 chr1B 96.133 181 6 1 6156 6335 476332684 476332864 2.050000e-75 294.0
37 TraesCS4D01G253100 chr3B 83.815 692 96 13 1 684 27169676 27168993 1.770000e-180 643.0
38 TraesCS4D01G253100 chr3B 97.191 178 5 0 6156 6333 368605639 368605462 1.230000e-77 302.0
39 TraesCS4D01G253100 chr3B 81.053 380 55 12 6687 7060 55108175 55108543 3.430000e-73 287.0
40 TraesCS4D01G253100 chr7B 81.679 393 55 11 6713 7099 427713522 427713903 2.040000e-80 311.0
41 TraesCS4D01G253100 chr7B 96.216 185 6 1 6152 6335 536117768 536117584 1.230000e-77 302.0
42 TraesCS4D01G253100 chr7B 97.674 43 1 0 7095 7137 462734038 462734080 2.910000e-09 75.0
43 TraesCS4D01G253100 chr7B 93.182 44 3 0 7095 7138 179203057 179203100 1.750000e-06 65.8
44 TraesCS4D01G253100 chr2A 82.065 368 59 6 6724 7087 766963371 766963007 2.630000e-79 307.0
45 TraesCS4D01G253100 chr2A 92.308 130 10 0 2148 2277 757030096 757029967 1.290000e-42 185.0
46 TraesCS4D01G253100 chr1D 80.328 427 66 16 6664 7087 62690444 62690855 2.630000e-79 307.0
47 TraesCS4D01G253100 chr5B 96.133 181 6 1 6156 6336 512980889 512980710 2.050000e-75 294.0
48 TraesCS4D01G253100 chr5B 96.078 51 2 0 7087 7137 696197395 696197445 4.830000e-12 84.2
49 TraesCS4D01G253100 chr1A 95.652 184 3 4 6156 6339 543931054 543930876 2.650000e-74 291.0
50 TraesCS4D01G253100 chr1A 90.580 138 12 1 2141 2277 25262801 25262938 1.670000e-41 182.0
51 TraesCS4D01G253100 chr3A 93.782 193 11 1 6146 6337 182633925 182633733 9.540000e-74 289.0
52 TraesCS4D01G253100 chr3A 93.077 130 9 0 2148 2277 46966452 46966581 2.770000e-44 191.0
53 TraesCS4D01G253100 chr5A 73.699 730 140 32 1 709 575671320 575672018 3.510000e-58 237.0
54 TraesCS4D01G253100 chr7A 95.385 130 6 0 2148 2277 177138232 177138103 2.750000e-49 207.0
55 TraesCS4D01G253100 chr7A 93.893 131 8 0 2147 2277 129222282 129222152 1.650000e-46 198.0
56 TraesCS4D01G253100 chr7A 92.366 131 10 0 2147 2277 184175091 184175221 3.580000e-43 187.0
57 TraesCS4D01G253100 chr7A 77.049 305 49 17 484 774 678160390 678160687 1.010000e-33 156.0
58 TraesCS4D01G253100 chr7A 93.333 45 3 0 7093 7137 484244546 484244502 4.870000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G253100 chr4D 421890193 421897709 7516 False 6729.500000 9254 100.0000 1 7517 2 chr4D.!!$F1 7516
1 TraesCS4D01G253100 chr4A 42120996 42127392 6396 True 1505.000000 5600 93.0795 798 7517 6 chr4A.!!$R3 6719
2 TraesCS4D01G253100 chr4B 518871231 518877296 6065 False 1295.571429 3055 94.2280 798 7517 7 chr4B.!!$F1 6719
3 TraesCS4D01G253100 chr6D 412770327 412771123 796 True 763.000000 763 84.4420 1 774 1 chr6D.!!$R1 773
4 TraesCS4D01G253100 chr6D 46012057 46012778 721 False 599.000000 599 82.3290 27 727 1 chr6D.!!$F1 700
5 TraesCS4D01G253100 chr7D 21094984 21095754 770 False 719.000000 719 83.9790 24 774 1 chr7D.!!$F2 750
6 TraesCS4D01G253100 chr7D 6000910 6001591 681 False 688.000000 688 85.0070 1 680 1 chr7D.!!$F1 679
7 TraesCS4D01G253100 chr6A 567940035 567940719 684 False 699.000000 699 85.1960 1 684 1 chr6A.!!$F1 683
8 TraesCS4D01G253100 chr5D 504022288 504022952 664 True 693.000000 693 85.5860 15 676 1 chr5D.!!$R1 661
9 TraesCS4D01G253100 chr2D 356729559 356730174 615 False 675.000000 675 86.4730 1 619 1 chr2D.!!$F1 618
10 TraesCS4D01G253100 chr3D 37523308 37524090 782 True 662.000000 662 82.1660 2 774 1 chr3D.!!$R2 772
11 TraesCS4D01G253100 chr1B 59189141 59189811 670 False 658.000000 658 84.4250 1 684 1 chr1B.!!$F1 683
12 TraesCS4D01G253100 chr3B 27168993 27169676 683 True 643.000000 643 83.8150 1 684 1 chr3B.!!$R1 683
13 TraesCS4D01G253100 chr5A 575671320 575672018 698 False 237.000000 237 73.6990 1 709 1 chr5A.!!$F1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 817 0.179070 GGCCTGGATTTCTCTCGTCC 60.179 60.000 0.00 0.00 0.00 4.79 F
1948 2144 0.320508 GTGTTCCTTCGACCTGGGAC 60.321 60.000 0.00 3.45 32.54 4.46 F
2193 2391 0.323087 GAGGGGGCCAAACGTGTTAT 60.323 55.000 4.39 0.00 0.00 1.89 F
2214 2412 0.759959 TGACGTTAGACAGGGCCAAA 59.240 50.000 6.18 0.00 0.00 3.28 F
2871 3078 1.304713 CCCCTTGCCAGACATGCTT 60.305 57.895 0.00 0.00 0.00 3.91 F
4340 4884 2.223641 GCACATGGATTGCTACCACATG 60.224 50.000 0.00 0.00 43.29 3.21 F
6170 6719 0.179015 TTTTCCTTGGCGCAGTGGTA 60.179 50.000 10.83 0.00 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 2372 0.323087 ATAACACGTTTGGCCCCCTC 60.323 55.000 0.00 0.00 0.00 4.30 R
2871 3078 1.003118 CAGCTACTTGGCAACCTACCA 59.997 52.381 0.00 0.00 34.65 3.25 R
3485 3704 2.158623 ACTGAGCAAAGAACCATGGACA 60.159 45.455 21.47 3.43 0.00 4.02 R
3486 3705 2.508526 ACTGAGCAAAGAACCATGGAC 58.491 47.619 21.47 12.11 0.00 4.02 R
4396 4940 2.543653 CCTTCAAGCAAACAAAGGGTCG 60.544 50.000 0.00 0.00 35.63 4.79 R
6173 6722 0.038892 CATGGTCACAAGGCAACAGC 60.039 55.000 0.00 0.00 41.41 4.40 R
7481 8188 1.134995 GCTTTGTTCAGGCATTAGGGC 60.135 52.381 0.00 0.00 43.80 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 189 2.492484 GGGTCTACCATCGATCGCTTAT 59.508 50.000 11.09 0.00 39.85 1.73
226 233 3.998672 TTCGCCGGAAGAACGCCT 61.999 61.111 5.05 0.00 0.00 5.52
240 247 4.671569 GCCTAGGCGCTCCGGATG 62.672 72.222 20.16 1.14 37.47 3.51
241 248 4.671569 CCTAGGCGCTCCGGATGC 62.672 72.222 18.01 18.01 37.47 3.91
364 389 2.361357 CGACACCTCCTCCTCCGT 60.361 66.667 0.00 0.00 0.00 4.69
412 443 3.230284 GGATGATCCGCCACCAGA 58.770 61.111 0.00 0.00 0.00 3.86
497 529 1.801913 CGCCGTCTCCGTCTTCAAG 60.802 63.158 0.00 0.00 0.00 3.02
511 543 5.681543 CCGTCTTCAAGTTCAAGTTTTTAGC 59.318 40.000 0.00 0.00 0.00 3.09
553 585 5.870433 TCCGTCGTTTATGTGAATTATGTGT 59.130 36.000 0.00 0.00 0.00 3.72
649 682 9.671279 TCTATGTTTGTGTGATGATCTATGTTT 57.329 29.630 0.00 0.00 0.00 2.83
675 710 8.942669 TTTTTCTACGTTGCATGTTTAGTATG 57.057 30.769 0.00 0.00 0.00 2.39
676 711 6.656314 TTCTACGTTGCATGTTTAGTATGG 57.344 37.500 0.00 0.00 0.00 2.74
677 712 5.968254 TCTACGTTGCATGTTTAGTATGGA 58.032 37.500 0.00 0.00 0.00 3.41
678 713 6.578944 TCTACGTTGCATGTTTAGTATGGAT 58.421 36.000 0.00 0.00 0.00 3.41
679 714 7.718525 TCTACGTTGCATGTTTAGTATGGATA 58.281 34.615 0.00 0.00 0.00 2.59
680 715 8.364894 TCTACGTTGCATGTTTAGTATGGATAT 58.635 33.333 0.00 0.00 0.00 1.63
681 716 7.189693 ACGTTGCATGTTTAGTATGGATATG 57.810 36.000 0.00 0.00 0.00 1.78
682 717 6.989759 ACGTTGCATGTTTAGTATGGATATGA 59.010 34.615 0.00 0.00 0.00 2.15
683 718 7.171508 ACGTTGCATGTTTAGTATGGATATGAG 59.828 37.037 0.00 0.00 0.00 2.90
684 719 7.384932 CGTTGCATGTTTAGTATGGATATGAGA 59.615 37.037 0.00 0.00 0.00 3.27
685 720 9.224267 GTTGCATGTTTAGTATGGATATGAGAT 57.776 33.333 0.00 0.00 0.00 2.75
687 722 9.875691 TGCATGTTTAGTATGGATATGAGATAC 57.124 33.333 0.00 0.00 0.00 2.24
688 723 9.875691 GCATGTTTAGTATGGATATGAGATACA 57.124 33.333 0.00 0.00 0.00 2.29
691 726 9.292195 TGTTTAGTATGGATATGAGATACACGA 57.708 33.333 0.00 0.00 0.00 4.35
695 730 8.354711 AGTATGGATATGAGATACACGAATGT 57.645 34.615 0.00 0.00 43.30 2.71
707 742 3.536158 CACGAATGTGGACGACAAAAT 57.464 42.857 0.00 0.00 42.59 1.82
708 743 3.884169 CACGAATGTGGACGACAAAATT 58.116 40.909 0.00 0.00 42.59 1.82
709 744 5.024768 CACGAATGTGGACGACAAAATTA 57.975 39.130 0.00 0.00 42.59 1.40
710 745 5.444983 CACGAATGTGGACGACAAAATTAA 58.555 37.500 0.00 0.00 42.59 1.40
711 746 5.563751 CACGAATGTGGACGACAAAATTAAG 59.436 40.000 0.00 0.00 42.59 1.85
712 747 5.086058 CGAATGTGGACGACAAAATTAAGG 58.914 41.667 0.00 0.00 38.36 2.69
713 748 5.106869 CGAATGTGGACGACAAAATTAAGGA 60.107 40.000 0.00 0.00 38.36 3.36
714 749 5.880054 ATGTGGACGACAAAATTAAGGAG 57.120 39.130 0.00 0.00 38.36 3.69
715 750 4.710324 TGTGGACGACAAAATTAAGGAGT 58.290 39.130 0.00 0.00 0.00 3.85
716 751 4.513692 TGTGGACGACAAAATTAAGGAGTG 59.486 41.667 0.00 0.00 0.00 3.51
717 752 4.514066 GTGGACGACAAAATTAAGGAGTGT 59.486 41.667 0.00 0.00 0.00 3.55
718 753 4.753107 TGGACGACAAAATTAAGGAGTGTC 59.247 41.667 0.00 0.00 36.17 3.67
719 754 4.995487 GGACGACAAAATTAAGGAGTGTCT 59.005 41.667 0.00 0.00 37.13 3.41
720 755 5.107065 GGACGACAAAATTAAGGAGTGTCTG 60.107 44.000 0.00 0.00 37.13 3.51
721 756 4.755123 ACGACAAAATTAAGGAGTGTCTGG 59.245 41.667 0.00 0.00 37.13 3.86
722 757 4.755123 CGACAAAATTAAGGAGTGTCTGGT 59.245 41.667 0.00 0.00 37.13 4.00
723 758 5.107065 CGACAAAATTAAGGAGTGTCTGGTC 60.107 44.000 0.00 0.00 37.13 4.02
724 759 5.690865 ACAAAATTAAGGAGTGTCTGGTCA 58.309 37.500 0.00 0.00 0.00 4.02
725 760 5.765182 ACAAAATTAAGGAGTGTCTGGTCAG 59.235 40.000 0.00 0.00 0.00 3.51
726 761 5.568620 AAATTAAGGAGTGTCTGGTCAGT 57.431 39.130 0.00 0.00 0.00 3.41
727 762 6.681729 AAATTAAGGAGTGTCTGGTCAGTA 57.318 37.500 0.00 0.00 0.00 2.74
728 763 5.662674 ATTAAGGAGTGTCTGGTCAGTAC 57.337 43.478 0.00 0.00 0.00 2.73
729 764 1.926108 AGGAGTGTCTGGTCAGTACC 58.074 55.000 0.00 0.00 46.98 3.34
737 772 4.565531 GGTCAGTACCGGTGAACG 57.434 61.111 19.93 5.23 43.80 3.95
738 773 1.735559 GGTCAGTACCGGTGAACGC 60.736 63.158 19.93 4.47 42.52 4.84
739 774 1.735559 GTCAGTACCGGTGAACGCC 60.736 63.158 19.93 0.00 42.52 5.68
762 797 4.003011 CGTTCGCGGGCGTTTGAA 62.003 61.111 13.21 0.00 40.74 2.69
763 798 2.127383 GTTCGCGGGCGTTTGAAG 60.127 61.111 13.21 0.00 40.74 3.02
764 799 3.350612 TTCGCGGGCGTTTGAAGG 61.351 61.111 13.21 0.00 40.74 3.46
771 806 4.002797 GCGTTTGAAGGCCTGGAT 57.997 55.556 5.69 0.00 33.94 3.41
772 807 2.267045 GCGTTTGAAGGCCTGGATT 58.733 52.632 5.69 0.00 33.94 3.01
773 808 0.603065 GCGTTTGAAGGCCTGGATTT 59.397 50.000 5.69 0.00 33.94 2.17
774 809 1.402852 GCGTTTGAAGGCCTGGATTTC 60.403 52.381 5.69 0.00 33.94 2.17
775 810 2.162681 CGTTTGAAGGCCTGGATTTCT 58.837 47.619 5.69 0.00 0.00 2.52
776 811 2.162408 CGTTTGAAGGCCTGGATTTCTC 59.838 50.000 5.69 0.00 0.00 2.87
777 812 3.425659 GTTTGAAGGCCTGGATTTCTCT 58.574 45.455 5.69 0.00 0.00 3.10
778 813 3.356529 TTGAAGGCCTGGATTTCTCTC 57.643 47.619 5.69 0.00 0.00 3.20
779 814 1.208052 TGAAGGCCTGGATTTCTCTCG 59.792 52.381 5.69 0.00 0.00 4.04
780 815 1.208293 GAAGGCCTGGATTTCTCTCGT 59.792 52.381 5.69 0.00 0.00 4.18
781 816 0.827368 AGGCCTGGATTTCTCTCGTC 59.173 55.000 3.11 0.00 0.00 4.20
782 817 0.179070 GGCCTGGATTTCTCTCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
783 818 0.827368 GCCTGGATTTCTCTCGTCCT 59.173 55.000 0.00 0.00 33.15 3.85
784 819 1.202475 GCCTGGATTTCTCTCGTCCTC 60.202 57.143 0.00 0.00 33.15 3.71
785 820 1.066303 CCTGGATTTCTCTCGTCCTCG 59.934 57.143 0.00 0.00 38.55 4.63
786 821 2.017782 CTGGATTTCTCTCGTCCTCGA 58.982 52.381 0.00 0.00 44.12 4.04
787 822 2.621055 CTGGATTTCTCTCGTCCTCGAT 59.379 50.000 0.00 0.00 45.21 3.59
788 823 2.619177 TGGATTTCTCTCGTCCTCGATC 59.381 50.000 0.00 0.00 45.21 3.69
789 824 2.619177 GGATTTCTCTCGTCCTCGATCA 59.381 50.000 0.00 0.00 45.21 2.92
790 825 3.254657 GGATTTCTCTCGTCCTCGATCAT 59.745 47.826 0.00 0.00 45.21 2.45
791 826 3.699779 TTTCTCTCGTCCTCGATCATG 57.300 47.619 0.00 0.00 45.21 3.07
792 827 2.333688 TCTCTCGTCCTCGATCATGT 57.666 50.000 0.00 0.00 45.21 3.21
793 828 2.644676 TCTCTCGTCCTCGATCATGTT 58.355 47.619 0.00 0.00 45.21 2.71
794 829 2.356069 TCTCTCGTCCTCGATCATGTTG 59.644 50.000 0.00 0.00 45.21 3.33
795 830 1.405463 TCTCGTCCTCGATCATGTTGG 59.595 52.381 0.00 0.00 45.21 3.77
796 831 0.459899 TCGTCCTCGATCATGTTGGG 59.540 55.000 0.00 0.00 41.35 4.12
891 933 4.218686 AACCCACCAGGCCACCAC 62.219 66.667 5.01 0.00 40.58 4.16
1024 1082 4.354212 CAACACACGCACGCTCCG 62.354 66.667 0.00 0.00 0.00 4.63
1119 1181 1.363744 GCCTCAAATCTCACCAGTCG 58.636 55.000 0.00 0.00 0.00 4.18
1229 1298 2.961721 CCGTCATCATGGTCGGCG 60.962 66.667 0.00 0.00 36.68 6.46
1249 1318 2.360726 CCCACCAAAGGTACGCCC 60.361 66.667 0.00 0.00 32.11 6.13
1322 1503 1.596727 GCATGGCTTCGTCTCTGATTC 59.403 52.381 0.00 0.00 0.00 2.52
1473 1667 2.069430 CCCTCCCTTCCTCTCTGCC 61.069 68.421 0.00 0.00 0.00 4.85
1474 1668 1.002792 CCTCCCTTCCTCTCTGCCT 59.997 63.158 0.00 0.00 0.00 4.75
1475 1669 0.620121 CCTCCCTTCCTCTCTGCCTT 60.620 60.000 0.00 0.00 0.00 4.35
1476 1670 1.284313 CTCCCTTCCTCTCTGCCTTT 58.716 55.000 0.00 0.00 0.00 3.11
1477 1671 0.987294 TCCCTTCCTCTCTGCCTTTG 59.013 55.000 0.00 0.00 0.00 2.77
1478 1672 0.679321 CCCTTCCTCTCTGCCTTTGC 60.679 60.000 0.00 0.00 38.26 3.68
1496 1690 0.667184 GCATTTGCTTGGTGGGTTCG 60.667 55.000 0.00 0.00 38.21 3.95
1675 1869 4.678743 GTGCCCTCCCCAACACCC 62.679 72.222 0.00 0.00 0.00 4.61
1678 1872 3.979497 CCCTCCCCAACACCCCAC 61.979 72.222 0.00 0.00 0.00 4.61
1679 1873 2.858974 CCTCCCCAACACCCCACT 60.859 66.667 0.00 0.00 0.00 4.00
1681 1875 1.074951 CTCCCCAACACCCCACTTC 59.925 63.158 0.00 0.00 0.00 3.01
1682 1876 1.698116 TCCCCAACACCCCACTTCA 60.698 57.895 0.00 0.00 0.00 3.02
1903 2099 4.022416 TGAATTAGTTGTTCGGCATTTGCT 60.022 37.500 2.12 0.00 41.70 3.91
1948 2144 0.320508 GTGTTCCTTCGACCTGGGAC 60.321 60.000 0.00 3.45 32.54 4.46
1956 2153 0.679505 TCGACCTGGGACTTTGAGTG 59.320 55.000 0.00 0.00 0.00 3.51
1970 2167 5.057149 ACTTTGAGTGATTGAGTTTAGCGT 58.943 37.500 0.00 0.00 0.00 5.07
2073 2271 8.783093 ACATTGAATAGAAAACACAGAAATCGA 58.217 29.630 0.00 0.00 0.00 3.59
2110 2308 0.749649 TTGCGCCACAGGAAAAACAT 59.250 45.000 4.18 0.00 0.00 2.71
2143 2341 1.229131 AGGGACTGAATGGATGCCAT 58.771 50.000 0.00 0.00 42.18 4.40
2144 2342 2.421725 AGGGACTGAATGGATGCCATA 58.578 47.619 0.00 0.00 40.03 2.74
2145 2343 2.374504 AGGGACTGAATGGATGCCATAG 59.625 50.000 0.00 0.00 40.03 2.23
2146 2344 2.107204 GGGACTGAATGGATGCCATAGT 59.893 50.000 0.00 0.68 44.40 2.12
2147 2345 3.406764 GGACTGAATGGATGCCATAGTC 58.593 50.000 15.97 15.97 44.40 2.59
2148 2346 3.181451 GGACTGAATGGATGCCATAGTCA 60.181 47.826 21.74 13.09 44.84 3.41
2149 2347 4.063689 GACTGAATGGATGCCATAGTCAG 58.936 47.826 19.31 19.31 46.32 3.51
2150 2348 4.082665 CTGAATGGATGCCATAGTCAGT 57.917 45.455 15.30 0.00 44.40 3.41
2151 2349 3.812262 TGAATGGATGCCATAGTCAGTG 58.188 45.455 0.00 0.00 44.40 3.66
2152 2350 2.945080 ATGGATGCCATAGTCAGTGG 57.055 50.000 0.00 0.00 43.19 4.00
2175 2373 5.201713 CGGAGCCAGAAACTCAATATAGA 57.798 43.478 0.00 0.00 35.79 1.98
2176 2374 5.226396 CGGAGCCAGAAACTCAATATAGAG 58.774 45.833 0.00 0.00 41.44 2.43
2177 2375 5.546526 GGAGCCAGAAACTCAATATAGAGG 58.453 45.833 0.00 0.00 39.97 3.69
2178 2376 5.512232 GGAGCCAGAAACTCAATATAGAGGG 60.512 48.000 0.00 0.00 39.97 4.30
2179 2377 4.349342 AGCCAGAAACTCAATATAGAGGGG 59.651 45.833 0.00 0.00 39.97 4.79
2180 2378 4.505742 GCCAGAAACTCAATATAGAGGGGG 60.506 50.000 0.00 0.00 39.97 5.40
2181 2379 4.505742 CCAGAAACTCAATATAGAGGGGGC 60.506 50.000 0.00 0.00 39.97 5.80
2182 2380 3.653352 AGAAACTCAATATAGAGGGGGCC 59.347 47.826 0.00 0.00 39.97 5.80
2183 2381 2.815357 ACTCAATATAGAGGGGGCCA 57.185 50.000 4.39 0.00 39.97 5.36
2184 2382 3.074857 ACTCAATATAGAGGGGGCCAA 57.925 47.619 4.39 0.00 39.97 4.52
2185 2383 3.403322 ACTCAATATAGAGGGGGCCAAA 58.597 45.455 4.39 0.00 39.97 3.28
2186 2384 3.138468 ACTCAATATAGAGGGGGCCAAAC 59.862 47.826 4.39 0.00 39.97 2.93
2187 2385 2.105821 TCAATATAGAGGGGGCCAAACG 59.894 50.000 4.39 0.00 0.00 3.60
2188 2386 1.815757 ATATAGAGGGGGCCAAACGT 58.184 50.000 4.39 0.00 0.00 3.99
2189 2387 0.834612 TATAGAGGGGGCCAAACGTG 59.165 55.000 4.39 0.00 0.00 4.49
2190 2388 1.205460 ATAGAGGGGGCCAAACGTGT 61.205 55.000 4.39 0.00 0.00 4.49
2191 2389 1.420532 TAGAGGGGGCCAAACGTGTT 61.421 55.000 4.39 0.00 0.00 3.32
2192 2390 1.073548 GAGGGGGCCAAACGTGTTA 59.926 57.895 4.39 0.00 0.00 2.41
2193 2391 0.323087 GAGGGGGCCAAACGTGTTAT 60.323 55.000 4.39 0.00 0.00 1.89
2194 2392 0.993470 AGGGGGCCAAACGTGTTATA 59.007 50.000 4.39 0.00 0.00 0.98
2195 2393 1.567175 AGGGGGCCAAACGTGTTATAT 59.433 47.619 4.39 0.00 0.00 0.86
2196 2394 1.679153 GGGGGCCAAACGTGTTATATG 59.321 52.381 4.39 0.00 0.00 1.78
2197 2395 2.645802 GGGGCCAAACGTGTTATATGA 58.354 47.619 4.39 0.00 0.00 2.15
2198 2396 2.356695 GGGGCCAAACGTGTTATATGAC 59.643 50.000 4.39 0.00 0.00 3.06
2199 2397 2.031191 GGGCCAAACGTGTTATATGACG 59.969 50.000 4.39 0.00 41.41 4.35
2208 2406 5.575957 ACGTGTTATATGACGTTAGACAGG 58.424 41.667 4.33 0.00 46.27 4.00
2209 2407 4.974275 CGTGTTATATGACGTTAGACAGGG 59.026 45.833 0.00 0.00 0.00 4.45
2210 2408 4.743644 GTGTTATATGACGTTAGACAGGGC 59.256 45.833 0.00 0.00 0.00 5.19
2211 2409 4.202182 TGTTATATGACGTTAGACAGGGCC 60.202 45.833 0.00 0.00 0.00 5.80
2212 2410 1.855295 TATGACGTTAGACAGGGCCA 58.145 50.000 6.18 0.00 0.00 5.36
2213 2411 0.981183 ATGACGTTAGACAGGGCCAA 59.019 50.000 6.18 0.00 0.00 4.52
2214 2412 0.759959 TGACGTTAGACAGGGCCAAA 59.240 50.000 6.18 0.00 0.00 3.28
2215 2413 1.349688 TGACGTTAGACAGGGCCAAAT 59.650 47.619 6.18 0.00 0.00 2.32
2216 2414 2.007608 GACGTTAGACAGGGCCAAATC 58.992 52.381 6.18 0.00 0.00 2.17
2217 2415 1.349688 ACGTTAGACAGGGCCAAATCA 59.650 47.619 6.18 0.00 0.00 2.57
2218 2416 2.026262 ACGTTAGACAGGGCCAAATCAT 60.026 45.455 6.18 0.00 0.00 2.45
2219 2417 2.614057 CGTTAGACAGGGCCAAATCATC 59.386 50.000 6.18 0.00 0.00 2.92
2220 2418 3.682718 CGTTAGACAGGGCCAAATCATCT 60.683 47.826 6.18 0.49 0.00 2.90
2221 2419 4.442893 CGTTAGACAGGGCCAAATCATCTA 60.443 45.833 6.18 0.00 0.00 1.98
2222 2420 5.437060 GTTAGACAGGGCCAAATCATCTAA 58.563 41.667 6.18 6.09 0.00 2.10
2223 2421 4.591321 AGACAGGGCCAAATCATCTAAA 57.409 40.909 6.18 0.00 0.00 1.85
2224 2422 5.134725 AGACAGGGCCAAATCATCTAAAT 57.865 39.130 6.18 0.00 0.00 1.40
2225 2423 6.266131 AGACAGGGCCAAATCATCTAAATA 57.734 37.500 6.18 0.00 0.00 1.40
2226 2424 6.856757 AGACAGGGCCAAATCATCTAAATAT 58.143 36.000 6.18 0.00 0.00 1.28
2227 2425 7.300658 AGACAGGGCCAAATCATCTAAATATT 58.699 34.615 6.18 0.00 0.00 1.28
2228 2426 7.232127 AGACAGGGCCAAATCATCTAAATATTG 59.768 37.037 6.18 0.00 0.00 1.90
2229 2427 6.161381 CAGGGCCAAATCATCTAAATATTGC 58.839 40.000 6.18 0.00 0.00 3.56
2230 2428 6.014840 CAGGGCCAAATCATCTAAATATTGCT 60.015 38.462 6.18 0.00 0.00 3.91
2231 2429 7.177216 CAGGGCCAAATCATCTAAATATTGCTA 59.823 37.037 6.18 0.00 0.00 3.49
2232 2430 7.729881 AGGGCCAAATCATCTAAATATTGCTAA 59.270 33.333 6.18 0.00 0.00 3.09
2233 2431 8.534496 GGGCCAAATCATCTAAATATTGCTAAT 58.466 33.333 4.39 0.00 0.00 1.73
2234 2432 9.933723 GGCCAAATCATCTAAATATTGCTAATT 57.066 29.630 0.00 0.00 0.00 1.40
2252 2450 9.474920 TTGCTAATTTTGTTTGACAAATAGAGG 57.525 29.630 3.49 4.98 46.17 3.69
2253 2451 8.855110 TGCTAATTTTGTTTGACAAATAGAGGA 58.145 29.630 3.49 7.99 46.17 3.71
2254 2452 9.860898 GCTAATTTTGTTTGACAAATAGAGGAT 57.139 29.630 3.49 1.43 46.17 3.24
2258 2456 9.918630 ATTTTGTTTGACAAATAGAGGATCAAG 57.081 29.630 3.49 0.00 46.17 3.02
2259 2457 8.690203 TTTGTTTGACAAATAGAGGATCAAGA 57.310 30.769 3.49 0.00 42.55 3.02
2260 2458 7.912056 TGTTTGACAAATAGAGGATCAAGAG 57.088 36.000 3.49 0.00 37.82 2.85
2261 2459 6.372659 TGTTTGACAAATAGAGGATCAAGAGC 59.627 38.462 3.49 0.00 37.82 4.09
2262 2460 5.682234 TGACAAATAGAGGATCAAGAGCA 57.318 39.130 0.00 0.00 37.82 4.26
2263 2461 5.423015 TGACAAATAGAGGATCAAGAGCAC 58.577 41.667 0.00 0.00 37.82 4.40
2264 2462 5.046376 TGACAAATAGAGGATCAAGAGCACA 60.046 40.000 0.00 0.00 37.82 4.57
2265 2463 5.999044 ACAAATAGAGGATCAAGAGCACAT 58.001 37.500 0.00 0.00 37.82 3.21
2266 2464 5.821470 ACAAATAGAGGATCAAGAGCACATG 59.179 40.000 0.00 0.00 37.82 3.21
2267 2465 5.627182 AATAGAGGATCAAGAGCACATGT 57.373 39.130 0.00 0.00 37.82 3.21
2268 2466 6.737720 AATAGAGGATCAAGAGCACATGTA 57.262 37.500 0.00 0.00 37.82 2.29
2269 2467 4.669206 AGAGGATCAAGAGCACATGTAG 57.331 45.455 0.00 0.00 37.82 2.74
2270 2468 4.029520 AGAGGATCAAGAGCACATGTAGT 58.970 43.478 0.00 0.00 37.82 2.73
2271 2469 4.469227 AGAGGATCAAGAGCACATGTAGTT 59.531 41.667 0.00 0.00 37.82 2.24
2272 2470 4.511527 AGGATCAAGAGCACATGTAGTTG 58.488 43.478 0.00 0.19 0.00 3.16
2273 2471 4.019860 AGGATCAAGAGCACATGTAGTTGT 60.020 41.667 0.00 0.00 0.00 3.32
2274 2472 5.187772 AGGATCAAGAGCACATGTAGTTGTA 59.812 40.000 0.00 0.00 0.00 2.41
2275 2473 6.051717 GGATCAAGAGCACATGTAGTTGTAT 58.948 40.000 0.00 0.00 0.00 2.29
2276 2474 6.540189 GGATCAAGAGCACATGTAGTTGTATT 59.460 38.462 0.00 0.00 0.00 1.89
2529 2727 2.350522 CACTGGCCATAGTTGTCTCAC 58.649 52.381 5.51 0.00 0.00 3.51
2607 2806 8.881262 AGTATATCCCCTAGTAGAAAACCAATG 58.119 37.037 0.00 0.00 0.00 2.82
2613 2812 5.765182 CCCTAGTAGAAAACCAATGCATAGG 59.235 44.000 0.00 0.00 0.00 2.57
2660 2867 7.039882 TGAATTAGATGGACTCTAACGGAAAC 58.960 38.462 0.00 0.00 46.61 2.78
2666 2873 7.765282 AGATGGACTCTAACGGAAACATTCCT 61.765 42.308 7.48 0.00 39.05 3.36
2723 2930 4.319139 TCTCTGAGAGATATGCAACTGC 57.681 45.455 8.34 0.00 36.22 4.40
2730 2937 2.615912 GAGATATGCAACTGCTTGGGTC 59.384 50.000 2.95 0.00 42.66 4.46
2762 2969 2.664402 ACTTTGCTGTTCTGGGTCAT 57.336 45.000 0.00 0.00 0.00 3.06
2796 3003 9.388506 GAACTTTTACCCTCTAAATACCCTTAC 57.611 37.037 0.00 0.00 0.00 2.34
2798 3005 7.180946 ACTTTTACCCTCTAAATACCCTTACGT 59.819 37.037 0.00 0.00 0.00 3.57
2871 3078 1.304713 CCCCTTGCCAGACATGCTT 60.305 57.895 0.00 0.00 0.00 3.91
2918 3125 6.663093 AGTTGGGATTGCTCATTGTGTATTAA 59.337 34.615 0.00 0.00 0.00 1.40
2919 3126 6.449635 TGGGATTGCTCATTGTGTATTAAC 57.550 37.500 0.00 0.00 0.00 2.01
2921 3128 6.095300 TGGGATTGCTCATTGTGTATTAACAG 59.905 38.462 0.00 0.00 35.91 3.16
2922 3129 6.095440 GGGATTGCTCATTGTGTATTAACAGT 59.905 38.462 0.00 0.00 35.91 3.55
2923 3130 6.968904 GGATTGCTCATTGTGTATTAACAGTG 59.031 38.462 0.00 0.00 38.69 3.66
2955 3171 2.760650 TCTGTTGGACACTCATCGCTAT 59.239 45.455 0.00 0.00 0.00 2.97
2985 3201 2.421670 CCATCTCTTCATTGCAGAGGCT 60.422 50.000 12.48 0.00 38.71 4.58
3255 3471 6.572519 ACAGTGCTGATTATTTGTTGTTTGT 58.427 32.000 6.17 0.00 0.00 2.83
3366 3585 7.151308 AGTAGTTAGCTTAGCTCTAATGCATG 58.849 38.462 11.09 0.00 40.44 4.06
3481 3700 7.044181 CAGAAGAAAGACAGAGGTATTATGCA 58.956 38.462 0.00 0.00 0.00 3.96
3482 3701 7.714377 CAGAAGAAAGACAGAGGTATTATGCAT 59.286 37.037 3.79 3.79 0.00 3.96
3483 3702 8.928448 AGAAGAAAGACAGAGGTATTATGCATA 58.072 33.333 1.16 1.16 0.00 3.14
3484 3703 9.717942 GAAGAAAGACAGAGGTATTATGCATAT 57.282 33.333 7.36 0.82 0.00 1.78
3486 3705 9.499479 AGAAAGACAGAGGTATTATGCATATTG 57.501 33.333 7.36 1.29 0.00 1.90
3487 3706 9.277783 GAAAGACAGAGGTATTATGCATATTGT 57.722 33.333 7.36 4.24 0.00 2.71
3488 3707 8.839310 AAGACAGAGGTATTATGCATATTGTC 57.161 34.615 7.36 11.88 33.33 3.18
3489 3708 7.390027 AGACAGAGGTATTATGCATATTGTCC 58.610 38.462 7.36 10.83 33.55 4.02
3490 3709 7.016563 AGACAGAGGTATTATGCATATTGTCCA 59.983 37.037 7.36 0.00 33.55 4.02
3491 3710 7.693132 ACAGAGGTATTATGCATATTGTCCAT 58.307 34.615 7.36 0.00 0.00 3.41
3492 3711 7.609146 ACAGAGGTATTATGCATATTGTCCATG 59.391 37.037 7.36 14.05 0.00 3.66
3493 3712 7.066645 CAGAGGTATTATGCATATTGTCCATGG 59.933 40.741 7.36 4.97 0.00 3.66
3494 3713 6.793478 AGGTATTATGCATATTGTCCATGGT 58.207 36.000 12.58 0.00 0.00 3.55
3495 3714 7.240897 AGGTATTATGCATATTGTCCATGGTT 58.759 34.615 12.58 0.00 0.00 3.67
3496 3715 7.394359 AGGTATTATGCATATTGTCCATGGTTC 59.606 37.037 12.58 7.17 0.00 3.62
3497 3716 7.394359 GGTATTATGCATATTGTCCATGGTTCT 59.606 37.037 12.58 0.00 0.00 3.01
3498 3717 7.844493 ATTATGCATATTGTCCATGGTTCTT 57.156 32.000 12.58 0.00 0.00 2.52
3499 3718 7.658525 TTATGCATATTGTCCATGGTTCTTT 57.341 32.000 12.58 0.00 0.00 2.52
3500 3719 5.327616 TGCATATTGTCCATGGTTCTTTG 57.672 39.130 12.58 5.42 0.00 2.77
3501 3720 4.114794 GCATATTGTCCATGGTTCTTTGC 58.885 43.478 12.58 11.43 0.00 3.68
3512 3731 6.767902 TCCATGGTTCTTTGCTCAGTTATATC 59.232 38.462 12.58 0.00 0.00 1.63
3513 3732 6.293081 CCATGGTTCTTTGCTCAGTTATATCG 60.293 42.308 2.57 0.00 0.00 2.92
3731 4069 4.455533 TGACAGCTTGGTGACATACAAATC 59.544 41.667 6.83 0.00 42.32 2.17
3801 4139 3.761897 TGTTTTGGTCCTCCTATTGGTG 58.238 45.455 0.00 0.00 34.23 4.17
3930 4268 8.762645 TGTGTGTATCTTCTATTCATCTTCCTT 58.237 33.333 0.00 0.00 0.00 3.36
4246 4790 8.534333 TTCACTTTCATGACACTGATAAGTAC 57.466 34.615 6.42 0.00 31.43 2.73
4289 4833 3.372025 GCTGTACCTCCAATGATTTCCCT 60.372 47.826 0.00 0.00 0.00 4.20
4297 4841 8.757307 ACCTCCAATGATTTCCCTCTTATATA 57.243 34.615 0.00 0.00 0.00 0.86
4340 4884 2.223641 GCACATGGATTGCTACCACATG 60.224 50.000 0.00 0.00 43.29 3.21
4359 4903 7.613022 ACCACATGATCTCATCACAATAAAACT 59.387 33.333 0.00 0.00 43.01 2.66
4565 5109 5.455326 GGACTAATTGGCCATGATACTGTCT 60.455 44.000 6.09 0.00 45.54 3.41
4634 5178 6.817184 TGATTAAGGTCCTGTATCTAGCAAC 58.183 40.000 12.41 0.00 0.00 4.17
4657 5201 3.432252 ACGGCTATTTTGTCTTCTCGTTG 59.568 43.478 0.00 0.00 0.00 4.10
4664 5208 5.890424 TTTTGTCTTCTCGTTGGTTCTTT 57.110 34.783 0.00 0.00 0.00 2.52
4695 5239 8.779354 AATCTGTAGAAAAACGATAGAGCTTT 57.221 30.769 0.00 0.00 41.38 3.51
4707 5251 6.043411 ACGATAGAGCTTTCATTAAGGTGAC 58.957 40.000 0.00 0.00 44.30 3.67
4926 5470 4.811555 TCTTGAAGTTGTTGATTGACCG 57.188 40.909 0.00 0.00 0.00 4.79
5114 5658 4.652822 AGGTAACATCTGGTTCTTCAACC 58.347 43.478 0.00 0.00 46.83 3.77
5477 6022 5.351465 ACGTGTACAGGCAAGATTTTCTATG 59.649 40.000 15.25 0.00 0.00 2.23
5530 6075 8.868522 ACTCATTTTCACCTCTTTCATCATAA 57.131 30.769 0.00 0.00 0.00 1.90
5667 6212 9.892130 TTTTAAACATAACATTTTGTGGTTCCT 57.108 25.926 0.00 0.00 35.54 3.36
5722 6271 5.736813 AGTTACTTTTGGTGTGACAGTACA 58.263 37.500 0.00 0.00 0.00 2.90
5731 6280 1.272781 GTGACAGTACATCTCGCTGC 58.727 55.000 0.00 0.00 33.87 5.25
5809 6358 5.184096 TGGGTGCATCACGTAACAAAATTAT 59.816 36.000 0.00 0.00 34.83 1.28
5919 6468 7.174107 ACCTTCCCATAAAAATCTTGTGATG 57.826 36.000 0.00 0.00 32.44 3.07
5920 6469 6.155049 ACCTTCCCATAAAAATCTTGTGATGG 59.845 38.462 0.00 0.00 34.77 3.51
5952 6501 3.444388 CGTAGGGATAGTTCCTATGCTCC 59.556 52.174 3.32 0.00 42.20 4.70
6161 6710 6.989759 TGTAATTTTCTTTCCTTTTCCTTGGC 59.010 34.615 0.00 0.00 0.00 4.52
6162 6711 3.726291 TTTCTTTCCTTTTCCTTGGCG 57.274 42.857 0.00 0.00 0.00 5.69
6163 6712 0.958822 TCTTTCCTTTTCCTTGGCGC 59.041 50.000 0.00 0.00 0.00 6.53
6164 6713 0.673437 CTTTCCTTTTCCTTGGCGCA 59.327 50.000 10.83 0.00 0.00 6.09
6165 6714 0.673437 TTTCCTTTTCCTTGGCGCAG 59.327 50.000 10.83 0.00 0.00 5.18
6166 6715 0.467290 TTCCTTTTCCTTGGCGCAGT 60.467 50.000 10.83 0.00 0.00 4.40
6167 6716 1.172180 TCCTTTTCCTTGGCGCAGTG 61.172 55.000 10.83 0.00 0.00 3.66
6168 6717 1.286880 CTTTTCCTTGGCGCAGTGG 59.713 57.895 10.83 7.67 0.00 4.00
6169 6718 1.454847 TTTTCCTTGGCGCAGTGGT 60.455 52.632 10.83 0.00 0.00 4.16
6170 6719 0.179015 TTTTCCTTGGCGCAGTGGTA 60.179 50.000 10.83 0.00 0.00 3.25
6171 6720 0.179015 TTTCCTTGGCGCAGTGGTAA 60.179 50.000 10.83 4.74 0.00 2.85
6172 6721 0.179015 TTCCTTGGCGCAGTGGTAAA 60.179 50.000 10.83 0.00 0.00 2.01
6173 6722 0.605319 TCCTTGGCGCAGTGGTAAAG 60.605 55.000 10.83 0.71 0.00 1.85
6174 6723 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
6175 6724 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
6176 6725 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
6177 6726 1.966451 GGCGCAGTGGTAAAGCTGT 60.966 57.895 10.83 0.00 35.33 4.40
6178 6727 1.515521 GGCGCAGTGGTAAAGCTGTT 61.516 55.000 10.83 0.00 35.33 3.16
6179 6728 0.385974 GCGCAGTGGTAAAGCTGTTG 60.386 55.000 0.30 0.00 35.33 3.33
6180 6729 0.385974 CGCAGTGGTAAAGCTGTTGC 60.386 55.000 0.00 0.00 40.05 4.17
6181 6730 0.039165 GCAGTGGTAAAGCTGTTGCC 60.039 55.000 8.21 8.21 40.80 4.52
6182 6731 1.609208 CAGTGGTAAAGCTGTTGCCT 58.391 50.000 13.72 0.00 40.80 4.75
6183 6732 1.956477 CAGTGGTAAAGCTGTTGCCTT 59.044 47.619 13.72 0.00 40.80 4.35
6184 6733 1.956477 AGTGGTAAAGCTGTTGCCTTG 59.044 47.619 13.72 0.00 40.80 3.61
6185 6734 1.681264 GTGGTAAAGCTGTTGCCTTGT 59.319 47.619 13.72 0.00 40.80 3.16
6186 6735 1.680735 TGGTAAAGCTGTTGCCTTGTG 59.319 47.619 13.72 0.00 40.80 3.33
6187 6736 1.953686 GGTAAAGCTGTTGCCTTGTGA 59.046 47.619 7.98 0.00 40.80 3.58
6188 6737 2.287608 GGTAAAGCTGTTGCCTTGTGAC 60.288 50.000 7.98 0.00 40.80 3.67
6189 6738 0.746659 AAAGCTGTTGCCTTGTGACC 59.253 50.000 0.00 0.00 40.80 4.02
6190 6739 0.395586 AAGCTGTTGCCTTGTGACCA 60.396 50.000 0.00 0.00 40.80 4.02
6191 6740 0.178981 AGCTGTTGCCTTGTGACCAT 60.179 50.000 0.00 0.00 40.80 3.55
6192 6741 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.000 0.00 0.00 0.00 3.66
6193 6742 1.608055 CTGTTGCCTTGTGACCATGA 58.392 50.000 0.00 0.00 0.00 3.07
6194 6743 1.538512 CTGTTGCCTTGTGACCATGAG 59.461 52.381 0.00 0.00 0.00 2.90
6195 6744 0.883833 GTTGCCTTGTGACCATGAGG 59.116 55.000 0.00 0.00 42.21 3.86
6205 6754 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
6206 6755 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
6207 6756 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
6208 6757 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
6209 6758 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
6210 6759 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
6211 6760 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
6212 6761 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
6213 6762 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
6214 6763 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
6215 6764 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
6216 6765 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
6217 6766 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
6218 6767 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
6219 6768 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
6233 6782 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
6234 6783 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
6235 6784 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
6236 6785 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
6237 6786 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
6238 6787 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
6239 6788 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
6240 6789 4.777896 ACAGCCTCTTACAGAAATGTAGGA 59.222 41.667 0.00 0.97 0.00 2.94
6241 6790 5.248477 ACAGCCTCTTACAGAAATGTAGGAA 59.752 40.000 2.49 0.00 31.51 3.36
6242 6791 6.173339 CAGCCTCTTACAGAAATGTAGGAAA 58.827 40.000 2.49 0.00 31.51 3.13
6243 6792 6.655003 CAGCCTCTTACAGAAATGTAGGAAAA 59.345 38.462 2.49 0.00 31.51 2.29
6244 6793 6.881602 AGCCTCTTACAGAAATGTAGGAAAAG 59.118 38.462 2.49 0.00 31.51 2.27
6245 6794 6.094186 GCCTCTTACAGAAATGTAGGAAAAGG 59.906 42.308 2.49 2.24 31.51 3.11
6246 6795 6.094186 CCTCTTACAGAAATGTAGGAAAAGGC 59.906 42.308 2.49 0.00 31.51 4.35
6247 6796 6.779860 TCTTACAGAAATGTAGGAAAAGGCT 58.220 36.000 0.00 0.00 29.32 4.58
6248 6797 6.655003 TCTTACAGAAATGTAGGAAAAGGCTG 59.345 38.462 0.00 0.00 29.32 4.85
6249 6798 3.507622 ACAGAAATGTAGGAAAAGGCTGC 59.492 43.478 0.00 0.00 0.00 5.25
6250 6799 2.749621 AGAAATGTAGGAAAAGGCTGCG 59.250 45.455 0.00 0.00 0.00 5.18
6251 6800 2.200373 AATGTAGGAAAAGGCTGCGT 57.800 45.000 0.00 0.00 0.00 5.24
6252 6801 3.343941 AATGTAGGAAAAGGCTGCGTA 57.656 42.857 0.00 0.00 0.00 4.42
6253 6802 2.088950 TGTAGGAAAAGGCTGCGTAC 57.911 50.000 0.00 0.00 0.00 3.67
6254 6803 1.621814 TGTAGGAAAAGGCTGCGTACT 59.378 47.619 12.90 0.00 0.00 2.73
6255 6804 2.827322 TGTAGGAAAAGGCTGCGTACTA 59.173 45.455 12.90 0.00 0.00 1.82
6256 6805 3.449737 TGTAGGAAAAGGCTGCGTACTAT 59.550 43.478 12.90 0.00 0.00 2.12
6257 6806 4.646040 TGTAGGAAAAGGCTGCGTACTATA 59.354 41.667 12.90 0.00 0.00 1.31
6258 6807 4.323553 AGGAAAAGGCTGCGTACTATAG 57.676 45.455 0.00 0.00 0.00 1.31
6259 6808 3.958798 AGGAAAAGGCTGCGTACTATAGA 59.041 43.478 6.78 0.00 0.00 1.98
6260 6809 4.049869 GGAAAAGGCTGCGTACTATAGAC 58.950 47.826 6.78 0.00 0.00 2.59
6261 6810 3.729862 AAAGGCTGCGTACTATAGACC 57.270 47.619 6.78 0.00 0.00 3.85
6262 6811 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
6263 6812 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
6264 6813 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
6265 6814 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
6266 6815 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
6267 6816 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
6268 6817 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
6269 6818 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
6270 6819 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
6275 6824 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
6276 6825 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
6277 6826 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
6278 6827 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
6279 6828 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
6280 6829 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
6281 6830 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
6282 6831 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
6283 6832 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
6290 6839 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
6294 6843 4.410400 CTTCCCCGGACCCTGCAC 62.410 72.222 0.73 0.00 0.00 4.57
6297 6846 4.722700 CCCCGGACCCTGCACAAG 62.723 72.222 0.73 0.00 0.00 3.16
6317 6866 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
6318 6867 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
6319 6868 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
6320 6869 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
6321 6870 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
6322 6871 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
6587 7223 4.963276 TTGATATGTTGCTGTTAGGTGC 57.037 40.909 0.00 0.00 0.00 5.01
6628 7264 2.890311 ACGCATTCCATTTCACTTTGGA 59.110 40.909 0.00 0.00 40.24 3.53
6672 7308 3.988819 TGCTTACTGAACAAAAATGCCC 58.011 40.909 0.00 0.00 0.00 5.36
6732 7368 8.969267 GCATTTTTCAAATTGCATCAAAATTCA 58.031 25.926 12.22 0.00 42.03 2.57
6800 7436 6.220930 ACGAAGACATAATGTACACTTGTGT 58.779 36.000 11.30 11.30 31.63 3.72
6811 7447 8.655651 AATGTACACTTGTGTAAATTTTTGGG 57.344 30.769 18.48 0.00 30.33 4.12
6832 7468 5.765677 TGGGACAAAATACGTTGAAATGAGA 59.234 36.000 0.00 0.00 31.92 3.27
6869 7505 7.472334 AGACAAATATGAGGCTTTTGAACAT 57.528 32.000 14.52 3.31 35.03 2.71
6903 7539 6.564709 TCATCCTCAAAGTCAATGAACTTG 57.435 37.500 0.00 0.00 39.40 3.16
6904 7540 6.064060 TCATCCTCAAAGTCAATGAACTTGT 58.936 36.000 5.74 0.00 39.40 3.16
6905 7541 6.205464 TCATCCTCAAAGTCAATGAACTTGTC 59.795 38.462 5.74 0.00 39.40 3.18
6906 7542 5.684704 TCCTCAAAGTCAATGAACTTGTCT 58.315 37.500 5.74 0.00 39.40 3.41
6907 7543 5.528690 TCCTCAAAGTCAATGAACTTGTCTG 59.471 40.000 5.74 0.12 39.40 3.51
6932 7568 1.028130 TGCACAGGTCGCATTTCAAA 58.972 45.000 0.00 0.00 33.55 2.69
6933 7569 1.612950 TGCACAGGTCGCATTTCAAAT 59.387 42.857 0.00 0.00 33.55 2.32
7196 7861 6.518200 GCAGTATCCATTTCACTTTGGGAAAA 60.518 38.462 0.00 0.00 37.74 2.29
7197 7862 7.092716 CAGTATCCATTTCACTTTGGGAAAAG 58.907 38.462 0.00 0.00 37.74 2.27
7240 7905 5.071653 TGCACTGGTCAGAGGCAATATATTA 59.928 40.000 15.39 0.00 38.52 0.98
7249 7914 9.994432 GTCAGAGGCAATATATTATGCATAAAC 57.006 33.333 22.37 7.66 44.32 2.01
7299 7967 4.698304 CGTTAGGATTTGCCCTGAAACTTA 59.302 41.667 0.00 0.00 37.10 2.24
7307 7975 6.773976 TTTGCCCTGAAACTTAATATGGAG 57.226 37.500 0.00 0.00 0.00 3.86
7372 8040 2.916702 TGCTCCAGTCGCATATCATT 57.083 45.000 0.00 0.00 31.40 2.57
7398 8066 2.148916 TATCAATGAAGGTAGCCGCG 57.851 50.000 0.00 0.00 0.00 6.46
7409 8077 1.142965 TAGCCGCGCTGCTATCAAA 59.857 52.632 26.87 9.22 42.75 2.69
7481 8188 1.019673 CGACAGATGATGCCCCAAAG 58.980 55.000 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 189 4.394078 CGTTCGTCTCCGCGGTCA 62.394 66.667 27.15 10.17 0.00 4.02
240 247 1.817099 CTCGGACTGCTCAATGGGC 60.817 63.158 0.00 0.00 0.00 5.36
241 248 1.817099 GCTCGGACTGCTCAATGGG 60.817 63.158 0.00 0.00 0.00 4.00
289 314 1.002134 TCCTGCTGCCACTTTAGCC 60.002 57.895 0.00 0.00 39.15 3.93
511 543 6.145048 ACGACGGACAAGTTTAAACTAGATTG 59.855 38.462 20.83 16.78 38.57 2.67
553 585 5.642063 GGATGTCCAAAAGATCGTCAAAGTA 59.358 40.000 0.00 0.00 35.64 2.24
669 704 9.462606 ACATTCGTGTATCTCATATCCATACTA 57.537 33.333 0.00 0.00 0.00 1.82
670 705 8.246871 CACATTCGTGTATCTCATATCCATACT 58.753 37.037 0.00 0.00 38.41 2.12
671 706 7.489435 CCACATTCGTGTATCTCATATCCATAC 59.511 40.741 0.00 0.00 41.93 2.39
672 707 7.396055 TCCACATTCGTGTATCTCATATCCATA 59.604 37.037 0.00 0.00 41.93 2.74
673 708 6.211384 TCCACATTCGTGTATCTCATATCCAT 59.789 38.462 0.00 0.00 41.93 3.41
674 709 5.538433 TCCACATTCGTGTATCTCATATCCA 59.462 40.000 0.00 0.00 41.93 3.41
675 710 5.864474 GTCCACATTCGTGTATCTCATATCC 59.136 44.000 0.00 0.00 41.93 2.59
676 711 5.569441 CGTCCACATTCGTGTATCTCATATC 59.431 44.000 0.00 0.00 41.93 1.63
677 712 5.240844 TCGTCCACATTCGTGTATCTCATAT 59.759 40.000 0.00 0.00 41.93 1.78
678 713 4.577283 TCGTCCACATTCGTGTATCTCATA 59.423 41.667 0.00 0.00 41.93 2.15
679 714 3.380320 TCGTCCACATTCGTGTATCTCAT 59.620 43.478 0.00 0.00 41.93 2.90
680 715 2.750712 TCGTCCACATTCGTGTATCTCA 59.249 45.455 0.00 0.00 41.93 3.27
681 716 3.106672 GTCGTCCACATTCGTGTATCTC 58.893 50.000 0.00 0.00 41.93 2.75
682 717 2.490509 TGTCGTCCACATTCGTGTATCT 59.509 45.455 0.00 0.00 41.93 1.98
683 718 2.871133 TGTCGTCCACATTCGTGTATC 58.129 47.619 0.00 0.00 41.93 2.24
684 719 3.306917 TTGTCGTCCACATTCGTGTAT 57.693 42.857 0.00 0.00 41.93 2.29
685 720 2.797074 TTGTCGTCCACATTCGTGTA 57.203 45.000 0.00 0.00 41.93 2.90
686 721 1.942677 TTTGTCGTCCACATTCGTGT 58.057 45.000 0.00 0.00 41.93 4.49
687 722 3.536158 ATTTTGTCGTCCACATTCGTG 57.464 42.857 0.00 0.00 43.21 4.35
688 723 5.334569 CCTTAATTTTGTCGTCCACATTCGT 60.335 40.000 0.00 0.00 33.90 3.85
689 724 5.086058 CCTTAATTTTGTCGTCCACATTCG 58.914 41.667 0.00 0.00 33.90 3.34
690 725 6.072673 ACTCCTTAATTTTGTCGTCCACATTC 60.073 38.462 0.00 0.00 33.90 2.67
691 726 5.768164 ACTCCTTAATTTTGTCGTCCACATT 59.232 36.000 0.00 0.00 33.90 2.71
692 727 5.181245 CACTCCTTAATTTTGTCGTCCACAT 59.819 40.000 0.00 0.00 33.90 3.21
693 728 4.513692 CACTCCTTAATTTTGTCGTCCACA 59.486 41.667 0.00 0.00 0.00 4.17
694 729 4.514066 ACACTCCTTAATTTTGTCGTCCAC 59.486 41.667 0.00 0.00 0.00 4.02
695 730 4.710324 ACACTCCTTAATTTTGTCGTCCA 58.290 39.130 0.00 0.00 0.00 4.02
696 731 4.995487 AGACACTCCTTAATTTTGTCGTCC 59.005 41.667 0.00 0.00 41.23 4.79
697 732 5.107065 CCAGACACTCCTTAATTTTGTCGTC 60.107 44.000 0.00 0.00 41.23 4.20
698 733 4.755123 CCAGACACTCCTTAATTTTGTCGT 59.245 41.667 0.00 0.00 41.23 4.34
699 734 4.755123 ACCAGACACTCCTTAATTTTGTCG 59.245 41.667 0.00 0.00 41.23 4.35
700 735 5.763204 TGACCAGACACTCCTTAATTTTGTC 59.237 40.000 0.00 0.00 37.45 3.18
701 736 5.690865 TGACCAGACACTCCTTAATTTTGT 58.309 37.500 0.00 0.00 0.00 2.83
702 737 5.765182 ACTGACCAGACACTCCTTAATTTTG 59.235 40.000 3.76 0.00 0.00 2.44
703 738 5.941788 ACTGACCAGACACTCCTTAATTTT 58.058 37.500 3.76 0.00 0.00 1.82
704 739 5.568620 ACTGACCAGACACTCCTTAATTT 57.431 39.130 3.76 0.00 0.00 1.82
705 740 5.046520 GGTACTGACCAGACACTCCTTAATT 60.047 44.000 3.76 0.00 46.12 1.40
706 741 4.466726 GGTACTGACCAGACACTCCTTAAT 59.533 45.833 3.76 0.00 46.12 1.40
707 742 3.830755 GGTACTGACCAGACACTCCTTAA 59.169 47.826 3.76 0.00 46.12 1.85
708 743 3.428532 GGTACTGACCAGACACTCCTTA 58.571 50.000 3.76 0.00 46.12 2.69
709 744 2.249139 GGTACTGACCAGACACTCCTT 58.751 52.381 3.76 0.00 46.12 3.36
710 745 1.926108 GGTACTGACCAGACACTCCT 58.074 55.000 3.76 0.00 46.12 3.69
720 755 1.735559 GCGTTCACCGGTACTGACC 60.736 63.158 6.87 0.00 43.03 4.02
721 756 1.735559 GGCGTTCACCGGTACTGAC 60.736 63.158 6.87 2.54 36.94 3.51
722 757 2.652530 GGCGTTCACCGGTACTGA 59.347 61.111 6.87 0.00 36.94 3.41
745 780 3.904233 CTTCAAACGCCCGCGAACG 62.904 63.158 17.16 14.02 42.83 3.95
746 781 2.127383 CTTCAAACGCCCGCGAAC 60.127 61.111 17.16 0.00 42.83 3.95
747 782 3.350612 CCTTCAAACGCCCGCGAA 61.351 61.111 17.16 0.00 42.83 4.70
753 788 1.250840 AATCCAGGCCTTCAAACGCC 61.251 55.000 0.00 0.00 46.09 5.68
754 789 0.603065 AAATCCAGGCCTTCAAACGC 59.397 50.000 0.00 0.00 0.00 4.84
755 790 2.162408 GAGAAATCCAGGCCTTCAAACG 59.838 50.000 0.00 0.00 0.00 3.60
756 791 3.425659 AGAGAAATCCAGGCCTTCAAAC 58.574 45.455 0.00 0.00 0.00 2.93
757 792 3.690460 GAGAGAAATCCAGGCCTTCAAA 58.310 45.455 0.00 0.00 0.00 2.69
758 793 2.355108 CGAGAGAAATCCAGGCCTTCAA 60.355 50.000 0.00 0.00 0.00 2.69
759 794 1.208052 CGAGAGAAATCCAGGCCTTCA 59.792 52.381 0.00 0.00 0.00 3.02
760 795 1.208293 ACGAGAGAAATCCAGGCCTTC 59.792 52.381 0.00 0.00 0.00 3.46
761 796 1.208293 GACGAGAGAAATCCAGGCCTT 59.792 52.381 0.00 0.00 0.00 4.35
762 797 0.827368 GACGAGAGAAATCCAGGCCT 59.173 55.000 0.00 0.00 0.00 5.19
763 798 0.179070 GGACGAGAGAAATCCAGGCC 60.179 60.000 0.00 0.00 32.35 5.19
764 799 0.827368 AGGACGAGAGAAATCCAGGC 59.173 55.000 0.00 0.00 34.73 4.85
765 800 1.066303 CGAGGACGAGAGAAATCCAGG 59.934 57.143 0.00 0.00 42.66 4.45
766 801 2.017782 TCGAGGACGAGAGAAATCCAG 58.982 52.381 0.00 0.00 43.81 3.86
767 802 2.124277 TCGAGGACGAGAGAAATCCA 57.876 50.000 0.00 0.00 43.81 3.41
778 813 0.459899 TCCCAACATGATCGAGGACG 59.540 55.000 0.00 0.00 41.26 4.79
779 814 2.093447 AGTTCCCAACATGATCGAGGAC 60.093 50.000 0.00 0.00 0.00 3.85
780 815 2.168521 GAGTTCCCAACATGATCGAGGA 59.831 50.000 0.00 0.00 0.00 3.71
781 816 2.555199 GAGTTCCCAACATGATCGAGG 58.445 52.381 0.00 0.00 0.00 4.63
782 817 2.093500 TGGAGTTCCCAACATGATCGAG 60.093 50.000 0.00 0.00 43.29 4.04
783 818 1.905894 TGGAGTTCCCAACATGATCGA 59.094 47.619 0.00 0.00 43.29 3.59
784 819 2.401583 TGGAGTTCCCAACATGATCG 57.598 50.000 0.00 0.00 43.29 3.69
793 828 3.248024 TCTCTAGCTTTTGGAGTTCCCA 58.752 45.455 0.00 0.00 44.93 4.37
794 829 3.983044 TCTCTAGCTTTTGGAGTTCCC 57.017 47.619 0.00 0.00 35.95 3.97
795 830 4.080863 TGGATCTCTAGCTTTTGGAGTTCC 60.081 45.833 18.50 18.50 46.09 3.62
796 831 5.091261 TGGATCTCTAGCTTTTGGAGTTC 57.909 43.478 0.00 0.38 35.95 3.01
1229 1298 2.360726 CGTACCTTTGGTGGGGCC 60.361 66.667 0.00 0.00 36.19 5.80
1304 1485 2.102252 GGAGAATCAGAGACGAAGCCAT 59.898 50.000 0.00 0.00 36.25 4.40
1305 1486 1.478510 GGAGAATCAGAGACGAAGCCA 59.521 52.381 0.00 0.00 36.25 4.75
1306 1487 1.535015 CGGAGAATCAGAGACGAAGCC 60.535 57.143 0.00 0.00 36.25 4.35
1307 1488 1.535015 CCGGAGAATCAGAGACGAAGC 60.535 57.143 0.00 0.00 36.25 3.86
1308 1489 1.746220 ACCGGAGAATCAGAGACGAAG 59.254 52.381 9.46 0.00 36.25 3.79
1309 1490 1.472878 CACCGGAGAATCAGAGACGAA 59.527 52.381 9.46 0.00 36.25 3.85
1310 1491 1.095600 CACCGGAGAATCAGAGACGA 58.904 55.000 9.46 0.00 36.25 4.20
1311 1492 0.101399 CCACCGGAGAATCAGAGACG 59.899 60.000 9.46 0.00 36.25 4.18
1322 1503 2.281484 CACACCCAACCACCGGAG 60.281 66.667 9.46 0.00 0.00 4.63
1359 1545 2.049063 GGCACGTTGAGCGAGAGT 60.049 61.111 0.00 0.00 44.77 3.24
1362 1548 2.664851 TTGGGCACGTTGAGCGAG 60.665 61.111 0.00 0.00 44.77 5.03
1473 1667 1.202675 ACCCACCAAGCAAATGCAAAG 60.203 47.619 8.28 0.00 45.16 2.77
1474 1668 0.835941 ACCCACCAAGCAAATGCAAA 59.164 45.000 8.28 0.00 45.16 3.68
1475 1669 0.835941 AACCCACCAAGCAAATGCAA 59.164 45.000 8.28 0.00 45.16 4.08
1476 1670 0.392336 GAACCCACCAAGCAAATGCA 59.608 50.000 8.28 0.00 45.16 3.96
1477 1671 0.667184 CGAACCCACCAAGCAAATGC 60.667 55.000 0.00 0.00 42.49 3.56
1478 1672 0.667184 GCGAACCCACCAAGCAAATG 60.667 55.000 0.00 0.00 0.00 2.32
1506 1700 0.723981 GCCTCAATTCTGACACGAGC 59.276 55.000 0.00 0.00 0.00 5.03
1675 1869 1.915141 AACTGGCAGGAATGAAGTGG 58.085 50.000 20.34 0.00 0.00 4.00
1677 1871 3.690460 CCTAAACTGGCAGGAATGAAGT 58.310 45.455 20.34 0.00 33.42 3.01
1870 2066 5.418310 AACAACTAATTCAGTTCCACGTG 57.582 39.130 9.08 9.08 44.48 4.49
1872 2068 4.377022 CCGAACAACTAATTCAGTTCCACG 60.377 45.833 0.00 0.00 44.48 4.94
1903 2099 5.450818 AGAATCCACCCTAACAAATAGCA 57.549 39.130 0.00 0.00 0.00 3.49
1948 2144 5.597813 ACGCTAAACTCAATCACTCAAAG 57.402 39.130 0.00 0.00 0.00 2.77
1956 2153 1.993370 ACAGCGACGCTAAACTCAATC 59.007 47.619 24.00 0.00 36.40 2.67
1970 2167 0.537143 AATCCTGCAAACCACAGCGA 60.537 50.000 0.00 0.00 33.65 4.93
2073 2271 6.735130 GGCGCAACCAAATAACTTCTATAAT 58.265 36.000 10.83 0.00 38.86 1.28
2110 2308 3.054728 TCAGTCCCTATGCAAAATTCCGA 60.055 43.478 0.00 0.00 0.00 4.55
2152 2350 2.024176 TATTGAGTTTCTGGCTCCGC 57.976 50.000 0.00 0.00 32.31 5.54
2153 2351 5.201713 TCTATATTGAGTTTCTGGCTCCG 57.798 43.478 0.00 0.00 32.31 4.63
2154 2352 5.512232 CCCTCTATATTGAGTTTCTGGCTCC 60.512 48.000 12.31 0.00 32.50 4.70
2155 2353 5.512232 CCCCTCTATATTGAGTTTCTGGCTC 60.512 48.000 12.31 0.00 32.50 4.70
2156 2354 4.349342 CCCCTCTATATTGAGTTTCTGGCT 59.651 45.833 12.31 0.00 32.50 4.75
2157 2355 4.505742 CCCCCTCTATATTGAGTTTCTGGC 60.506 50.000 12.31 0.00 32.50 4.85
2158 2356 4.505742 GCCCCCTCTATATTGAGTTTCTGG 60.506 50.000 12.31 6.47 32.50 3.86
2159 2357 4.505742 GGCCCCCTCTATATTGAGTTTCTG 60.506 50.000 12.31 0.00 32.50 3.02
2160 2358 3.653352 GGCCCCCTCTATATTGAGTTTCT 59.347 47.826 12.31 0.00 32.50 2.52
2161 2359 3.394606 TGGCCCCCTCTATATTGAGTTTC 59.605 47.826 12.31 0.66 32.50 2.78
2162 2360 3.403322 TGGCCCCCTCTATATTGAGTTT 58.597 45.455 12.31 0.00 32.50 2.66
2163 2361 3.074857 TGGCCCCCTCTATATTGAGTT 57.925 47.619 12.31 0.00 32.50 3.01
2164 2362 2.815357 TGGCCCCCTCTATATTGAGT 57.185 50.000 12.31 0.00 32.50 3.41
2165 2363 3.756117 GTTTGGCCCCCTCTATATTGAG 58.244 50.000 0.00 7.15 0.00 3.02
2166 2364 2.105821 CGTTTGGCCCCCTCTATATTGA 59.894 50.000 0.00 0.00 0.00 2.57
2167 2365 2.158667 ACGTTTGGCCCCCTCTATATTG 60.159 50.000 0.00 0.00 0.00 1.90
2168 2366 2.132686 ACGTTTGGCCCCCTCTATATT 58.867 47.619 0.00 0.00 0.00 1.28
2169 2367 1.420138 CACGTTTGGCCCCCTCTATAT 59.580 52.381 0.00 0.00 0.00 0.86
2170 2368 0.834612 CACGTTTGGCCCCCTCTATA 59.165 55.000 0.00 0.00 0.00 1.31
2171 2369 1.205460 ACACGTTTGGCCCCCTCTAT 61.205 55.000 0.00 0.00 0.00 1.98
2172 2370 1.420532 AACACGTTTGGCCCCCTCTA 61.421 55.000 0.00 0.00 0.00 2.43
2173 2371 1.420532 TAACACGTTTGGCCCCCTCT 61.421 55.000 0.00 0.00 0.00 3.69
2174 2372 0.323087 ATAACACGTTTGGCCCCCTC 60.323 55.000 0.00 0.00 0.00 4.30
2175 2373 0.993470 TATAACACGTTTGGCCCCCT 59.007 50.000 0.00 0.00 0.00 4.79
2176 2374 1.679153 CATATAACACGTTTGGCCCCC 59.321 52.381 0.00 0.00 0.00 5.40
2177 2375 2.356695 GTCATATAACACGTTTGGCCCC 59.643 50.000 0.00 0.00 0.00 5.80
2178 2376 2.031191 CGTCATATAACACGTTTGGCCC 59.969 50.000 0.00 0.00 0.00 5.80
2179 2377 2.674357 ACGTCATATAACACGTTTGGCC 59.326 45.455 0.00 0.00 46.93 5.36
2186 2384 4.974275 CCCTGTCTAACGTCATATAACACG 59.026 45.833 5.51 5.51 41.90 4.49
2187 2385 4.743644 GCCCTGTCTAACGTCATATAACAC 59.256 45.833 0.00 0.00 0.00 3.32
2188 2386 4.202182 GGCCCTGTCTAACGTCATATAACA 60.202 45.833 0.00 0.00 0.00 2.41
2189 2387 4.202182 TGGCCCTGTCTAACGTCATATAAC 60.202 45.833 0.00 0.00 0.00 1.89
2190 2388 3.962063 TGGCCCTGTCTAACGTCATATAA 59.038 43.478 0.00 0.00 0.00 0.98
2191 2389 3.568443 TGGCCCTGTCTAACGTCATATA 58.432 45.455 0.00 0.00 0.00 0.86
2192 2390 2.394632 TGGCCCTGTCTAACGTCATAT 58.605 47.619 0.00 0.00 0.00 1.78
2193 2391 1.855295 TGGCCCTGTCTAACGTCATA 58.145 50.000 0.00 0.00 0.00 2.15
2194 2392 0.981183 TTGGCCCTGTCTAACGTCAT 59.019 50.000 0.00 0.00 0.00 3.06
2195 2393 0.759959 TTTGGCCCTGTCTAACGTCA 59.240 50.000 0.00 0.00 0.00 4.35
2196 2394 2.007608 GATTTGGCCCTGTCTAACGTC 58.992 52.381 0.00 0.00 0.00 4.34
2197 2395 1.349688 TGATTTGGCCCTGTCTAACGT 59.650 47.619 0.00 0.00 0.00 3.99
2198 2396 2.107950 TGATTTGGCCCTGTCTAACG 57.892 50.000 0.00 0.00 0.00 3.18
2199 2397 3.891049 AGATGATTTGGCCCTGTCTAAC 58.109 45.455 0.00 0.00 0.00 2.34
2200 2398 5.708736 TTAGATGATTTGGCCCTGTCTAA 57.291 39.130 0.00 3.33 0.00 2.10
2201 2399 5.708736 TTTAGATGATTTGGCCCTGTCTA 57.291 39.130 0.00 0.00 0.00 2.59
2202 2400 4.591321 TTTAGATGATTTGGCCCTGTCT 57.409 40.909 0.00 0.00 0.00 3.41
2203 2401 7.373493 CAATATTTAGATGATTTGGCCCTGTC 58.627 38.462 0.00 0.00 0.00 3.51
2204 2402 6.239402 GCAATATTTAGATGATTTGGCCCTGT 60.239 38.462 0.00 0.00 0.00 4.00
2205 2403 6.014840 AGCAATATTTAGATGATTTGGCCCTG 60.015 38.462 0.00 0.00 0.00 4.45
2206 2404 6.080009 AGCAATATTTAGATGATTTGGCCCT 58.920 36.000 0.00 0.00 0.00 5.19
2207 2405 6.350629 AGCAATATTTAGATGATTTGGCCC 57.649 37.500 0.00 0.00 0.00 5.80
2208 2406 9.933723 AATTAGCAATATTTAGATGATTTGGCC 57.066 29.630 0.00 0.00 0.00 5.36
2235 2433 7.094634 GCTCTTGATCCTCTATTTGTCAAACAA 60.095 37.037 0.00 0.00 36.11 2.83
2236 2434 6.372659 GCTCTTGATCCTCTATTTGTCAAACA 59.627 38.462 0.00 0.00 0.00 2.83
2237 2435 6.372659 TGCTCTTGATCCTCTATTTGTCAAAC 59.627 38.462 0.00 0.00 0.00 2.93
2238 2436 6.372659 GTGCTCTTGATCCTCTATTTGTCAAA 59.627 38.462 0.00 0.00 0.00 2.69
2239 2437 5.877012 GTGCTCTTGATCCTCTATTTGTCAA 59.123 40.000 0.00 0.00 0.00 3.18
2240 2438 5.046376 TGTGCTCTTGATCCTCTATTTGTCA 60.046 40.000 0.00 0.00 0.00 3.58
2241 2439 5.423015 TGTGCTCTTGATCCTCTATTTGTC 58.577 41.667 0.00 0.00 0.00 3.18
2242 2440 5.426689 TGTGCTCTTGATCCTCTATTTGT 57.573 39.130 0.00 0.00 0.00 2.83
2243 2441 5.821470 ACATGTGCTCTTGATCCTCTATTTG 59.179 40.000 0.00 0.00 0.00 2.32
2244 2442 5.999044 ACATGTGCTCTTGATCCTCTATTT 58.001 37.500 0.00 0.00 0.00 1.40
2245 2443 5.627182 ACATGTGCTCTTGATCCTCTATT 57.373 39.130 0.00 0.00 0.00 1.73
2246 2444 5.837979 ACTACATGTGCTCTTGATCCTCTAT 59.162 40.000 9.11 0.00 0.00 1.98
2247 2445 5.204292 ACTACATGTGCTCTTGATCCTCTA 58.796 41.667 9.11 0.00 0.00 2.43
2248 2446 4.029520 ACTACATGTGCTCTTGATCCTCT 58.970 43.478 9.11 0.00 0.00 3.69
2249 2447 4.399004 ACTACATGTGCTCTTGATCCTC 57.601 45.455 9.11 0.00 0.00 3.71
2250 2448 4.019860 ACAACTACATGTGCTCTTGATCCT 60.020 41.667 9.11 0.00 30.82 3.24
2251 2449 4.256920 ACAACTACATGTGCTCTTGATCC 58.743 43.478 9.11 0.00 30.82 3.36
2252 2450 7.545362 AATACAACTACATGTGCTCTTGATC 57.455 36.000 9.11 0.00 34.75 2.92
2508 2706 1.278985 TGAGACAACTATGGCCAGTGG 59.721 52.381 13.05 4.20 33.81 4.00
2509 2707 2.289631 TGTGAGACAACTATGGCCAGTG 60.290 50.000 13.05 9.06 33.81 3.66
2510 2708 1.977854 TGTGAGACAACTATGGCCAGT 59.022 47.619 13.05 2.06 33.81 4.00
2511 2709 2.234661 TCTGTGAGACAACTATGGCCAG 59.765 50.000 13.05 0.00 33.81 4.85
2512 2710 2.028112 GTCTGTGAGACAACTATGGCCA 60.028 50.000 8.56 8.56 44.45 5.36
2513 2711 2.622436 GTCTGTGAGACAACTATGGCC 58.378 52.381 0.00 0.00 44.45 5.36
2529 2727 5.767168 AGACCTCCTTGAAATTTTGAGTCTG 59.233 40.000 0.00 0.00 0.00 3.51
2566 2764 7.730784 AGGGGATATACTATTCCATAGGATTCG 59.269 40.741 0.00 0.00 37.57 3.34
2607 2806 2.091885 TGGACCCTCCAAATTCCTATGC 60.092 50.000 0.00 0.00 45.00 3.14
2723 2930 6.793505 AAGTAGATACCAGTAAGACCCAAG 57.206 41.667 0.00 0.00 0.00 3.61
2730 2937 7.276658 CAGAACAGCAAAGTAGATACCAGTAAG 59.723 40.741 0.00 0.00 0.00 2.34
2778 2985 6.378661 AAAACGTAAGGGTATTTAGAGGGT 57.621 37.500 0.00 0.00 46.39 4.34
2871 3078 1.003118 CAGCTACTTGGCAACCTACCA 59.997 52.381 0.00 0.00 34.65 3.25
2918 3125 7.033185 GTCCAACAGAAAATTAACAACACTGT 58.967 34.615 0.00 0.00 38.48 3.55
2919 3126 7.009174 GTGTCCAACAGAAAATTAACAACACTG 59.991 37.037 0.00 0.00 31.78 3.66
2921 3128 7.033185 AGTGTCCAACAGAAAATTAACAACAC 58.967 34.615 0.00 0.00 33.99 3.32
2922 3129 7.094162 TGAGTGTCCAACAGAAAATTAACAACA 60.094 33.333 0.00 0.00 0.00 3.33
2923 3130 7.254852 TGAGTGTCCAACAGAAAATTAACAAC 58.745 34.615 0.00 0.00 0.00 3.32
2955 3171 6.829849 TGCAATGAAGAGATGGTGATACATA 58.170 36.000 0.00 0.00 0.00 2.29
2985 3201 5.139727 CCCATGCCTCCATACTTTTTATGA 58.860 41.667 0.00 0.00 0.00 2.15
3063 3279 6.747414 ATACTATATGAACTCTGGTTGCCA 57.253 37.500 0.00 0.00 35.58 4.92
3106 3322 7.882755 ACCTGAGAAAGATTTTGGGGATAATA 58.117 34.615 0.00 0.00 0.00 0.98
3255 3471 7.504403 TCCAAATGGAAAATAGAACAGCAAAA 58.496 30.769 0.00 0.00 42.18 2.44
3323 3542 7.458409 AACTACTCACTAAGAACGATTGGTA 57.542 36.000 0.00 0.00 0.00 3.25
3366 3585 7.717568 AGATCACTCACCTACACATGTATAAC 58.282 38.462 0.00 0.00 0.00 1.89
3422 3641 9.950496 ACATCCTCGATAGCAATTAATATCTTT 57.050 29.630 0.00 0.00 0.00 2.52
3481 3700 5.263599 TGAGCAAAGAACCATGGACAATAT 58.736 37.500 21.47 0.00 0.00 1.28
3482 3701 4.661222 TGAGCAAAGAACCATGGACAATA 58.339 39.130 21.47 0.00 0.00 1.90
3483 3702 3.499338 TGAGCAAAGAACCATGGACAAT 58.501 40.909 21.47 0.71 0.00 2.71
3484 3703 2.886523 CTGAGCAAAGAACCATGGACAA 59.113 45.455 21.47 0.00 0.00 3.18
3485 3704 2.158623 ACTGAGCAAAGAACCATGGACA 60.159 45.455 21.47 3.43 0.00 4.02
3486 3705 2.508526 ACTGAGCAAAGAACCATGGAC 58.491 47.619 21.47 12.11 0.00 4.02
3487 3706 2.957402 ACTGAGCAAAGAACCATGGA 57.043 45.000 21.47 0.00 0.00 3.41
3488 3707 6.293081 CGATATAACTGAGCAAAGAACCATGG 60.293 42.308 11.19 11.19 0.00 3.66
3489 3708 6.653183 CGATATAACTGAGCAAAGAACCATG 58.347 40.000 0.00 0.00 0.00 3.66
3490 3709 5.237344 GCGATATAACTGAGCAAAGAACCAT 59.763 40.000 0.00 0.00 0.00 3.55
3491 3710 4.570772 GCGATATAACTGAGCAAAGAACCA 59.429 41.667 0.00 0.00 0.00 3.67
3492 3711 4.570772 TGCGATATAACTGAGCAAAGAACC 59.429 41.667 0.00 0.00 34.66 3.62
3493 3712 5.718649 TGCGATATAACTGAGCAAAGAAC 57.281 39.130 0.00 0.00 34.66 3.01
3494 3713 6.925610 AATGCGATATAACTGAGCAAAGAA 57.074 33.333 0.00 0.00 41.37 2.52
3495 3714 6.925610 AAATGCGATATAACTGAGCAAAGA 57.074 33.333 0.00 0.00 41.37 2.52
3496 3715 7.975866 AAAAATGCGATATAACTGAGCAAAG 57.024 32.000 0.00 0.00 41.37 2.77
3702 4040 3.141398 TGTCACCAAGCTGTCAGAATTC 58.859 45.455 3.32 0.00 0.00 2.17
3801 4139 5.629079 AGTTTGTGCTGTAAATAGGAAGC 57.371 39.130 0.00 0.00 36.18 3.86
4022 4360 7.062322 TCCTGGTGATGCATTAATTTGATAGT 58.938 34.615 0.00 0.00 0.00 2.12
4023 4361 7.514784 TCCTGGTGATGCATTAATTTGATAG 57.485 36.000 0.00 0.00 0.00 2.08
4026 4364 5.716228 ACTTCCTGGTGATGCATTAATTTGA 59.284 36.000 0.00 0.00 0.00 2.69
4234 4579 7.229707 AGGATAGCAGTAGTGTACTTATCAGTG 59.770 40.741 0.00 0.00 36.76 3.66
4246 4790 3.868077 GCAAGACAAGGATAGCAGTAGTG 59.132 47.826 0.00 0.00 0.00 2.74
4297 4841 8.100791 TGTGCACTGAACTTACCTATCTTTAAT 58.899 33.333 19.41 0.00 0.00 1.40
4359 4903 4.933505 TCAGAAAACATGGCAAACATCA 57.066 36.364 0.00 0.00 37.84 3.07
4396 4940 2.543653 CCTTCAAGCAAACAAAGGGTCG 60.544 50.000 0.00 0.00 35.63 4.79
4495 5039 4.461431 TCTGAATTGATATGATGGCCATGC 59.539 41.667 26.56 15.28 36.71 4.06
4556 5100 4.756084 ACAAAGCAGCAAAGACAGTATC 57.244 40.909 0.00 0.00 0.00 2.24
4634 5178 2.993899 ACGAGAAGACAAAATAGCCGTG 59.006 45.455 0.00 0.00 0.00 4.94
4664 5208 9.923143 TCTATCGTTTTTCTACAGATTTCTTGA 57.077 29.630 0.00 0.00 0.00 3.02
4695 5239 5.725551 ATACATTGGGGTCACCTTAATGA 57.274 39.130 22.49 11.55 40.50 2.57
4707 5251 9.449719 GTTCAGTATCCTATAAATACATTGGGG 57.550 37.037 7.37 0.00 33.00 4.96
5039 5583 3.863424 GGATGTACACGTCACCTACAATG 59.137 47.826 0.00 0.00 33.64 2.82
5722 6271 1.802960 CAAAGACAGTTGCAGCGAGAT 59.197 47.619 0.00 0.00 0.00 2.75
5731 6280 5.920840 TGTATCTTCGTCTCAAAGACAGTTG 59.079 40.000 7.78 0.00 45.30 3.16
5760 6309 5.483685 AAAGACTGGATTAGCAGTGTACA 57.516 39.130 0.00 0.00 0.00 2.90
5764 6313 5.542616 CAGAAAAGACTGGATTAGCAGTG 57.457 43.478 0.00 0.00 34.64 3.66
5818 6367 0.182775 GTGGTCACCTTCACCCTGTT 59.817 55.000 0.00 0.00 32.24 3.16
5919 6468 5.718724 ACTATCCCTACGTAAAGCATACC 57.281 43.478 0.00 0.00 0.00 2.73
5920 6469 6.155136 GGAACTATCCCTACGTAAAGCATAC 58.845 44.000 0.00 0.00 40.10 2.39
5952 6501 4.031028 GCATTTAGCTAGCACGTCAAATG 58.969 43.478 18.83 20.72 41.15 2.32
6153 6702 0.179015 TTTACCACTGCGCCAAGGAA 60.179 50.000 14.91 0.00 0.00 3.36
6154 6703 0.605319 CTTTACCACTGCGCCAAGGA 60.605 55.000 14.91 0.00 0.00 3.36
6155 6704 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
6156 6705 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
6157 6706 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
6158 6707 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
6159 6708 1.515521 AACAGCTTTACCACTGCGCC 61.516 55.000 4.18 0.00 37.42 6.53
6160 6709 0.385974 CAACAGCTTTACCACTGCGC 60.386 55.000 0.00 0.00 37.42 6.09
6161 6710 0.385974 GCAACAGCTTTACCACTGCG 60.386 55.000 0.00 0.00 37.42 5.18
6162 6711 0.039165 GGCAACAGCTTTACCACTGC 60.039 55.000 0.00 0.00 37.42 4.40
6163 6712 1.609208 AGGCAACAGCTTTACCACTG 58.391 50.000 0.00 0.00 39.86 3.66
6164 6713 1.956477 CAAGGCAACAGCTTTACCACT 59.044 47.619 0.00 0.00 41.41 4.00
6165 6714 1.681264 ACAAGGCAACAGCTTTACCAC 59.319 47.619 0.00 0.00 41.41 4.16
6166 6715 1.680735 CACAAGGCAACAGCTTTACCA 59.319 47.619 0.00 0.00 41.41 3.25
6167 6716 1.953686 TCACAAGGCAACAGCTTTACC 59.046 47.619 0.00 0.00 41.41 2.85
6168 6717 2.287608 GGTCACAAGGCAACAGCTTTAC 60.288 50.000 0.00 0.00 41.41 2.01
6169 6718 1.953686 GGTCACAAGGCAACAGCTTTA 59.046 47.619 0.00 0.00 41.41 1.85
6170 6719 0.746659 GGTCACAAGGCAACAGCTTT 59.253 50.000 0.00 0.00 41.41 3.51
6171 6720 0.395586 TGGTCACAAGGCAACAGCTT 60.396 50.000 0.00 0.00 41.41 3.74
6172 6721 0.178981 ATGGTCACAAGGCAACAGCT 60.179 50.000 0.00 0.00 41.41 4.24
6173 6722 0.038892 CATGGTCACAAGGCAACAGC 60.039 55.000 0.00 0.00 41.41 4.40
6174 6723 1.538512 CTCATGGTCACAAGGCAACAG 59.461 52.381 0.00 0.00 41.41 3.16
6175 6724 1.608055 CTCATGGTCACAAGGCAACA 58.392 50.000 0.00 0.00 41.41 3.33
6176 6725 0.883833 CCTCATGGTCACAAGGCAAC 59.116 55.000 0.00 0.00 0.00 4.17
6177 6726 0.478072 ACCTCATGGTCACAAGGCAA 59.522 50.000 0.00 0.00 44.78 4.52
6178 6727 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
6189 6738 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
6190 6739 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
6191 6740 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
6192 6741 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
6193 6742 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
6194 6743 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
6195 6744 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
6196 6745 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
6197 6746 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
6198 6747 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
6199 6748 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
6200 6749 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
6201 6750 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
6202 6751 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
6203 6752 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
6204 6753 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
6205 6754 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
6206 6755 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
6207 6756 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
6208 6757 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
6209 6758 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
6210 6759 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
6211 6760 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
6223 6772 6.655003 CAGCCTTTTCCTACATTTCTGTAAGA 59.345 38.462 0.00 0.00 44.68 2.10
6224 6773 6.623767 GCAGCCTTTTCCTACATTTCTGTAAG 60.624 42.308 0.00 0.00 37.41 2.34
6225 6774 5.183140 GCAGCCTTTTCCTACATTTCTGTAA 59.817 40.000 0.00 0.00 37.41 2.41
6226 6775 4.700213 GCAGCCTTTTCCTACATTTCTGTA 59.300 41.667 0.00 0.00 36.79 2.74
6227 6776 3.507622 GCAGCCTTTTCCTACATTTCTGT 59.492 43.478 0.00 0.00 39.49 3.41
6228 6777 3.426695 CGCAGCCTTTTCCTACATTTCTG 60.427 47.826 0.00 0.00 0.00 3.02
6229 6778 2.749621 CGCAGCCTTTTCCTACATTTCT 59.250 45.455 0.00 0.00 0.00 2.52
6230 6779 2.488153 ACGCAGCCTTTTCCTACATTTC 59.512 45.455 0.00 0.00 0.00 2.17
6231 6780 2.514803 ACGCAGCCTTTTCCTACATTT 58.485 42.857 0.00 0.00 0.00 2.32
6232 6781 2.200373 ACGCAGCCTTTTCCTACATT 57.800 45.000 0.00 0.00 0.00 2.71
6233 6782 2.236395 AGTACGCAGCCTTTTCCTACAT 59.764 45.455 0.00 0.00 0.00 2.29
6234 6783 1.621814 AGTACGCAGCCTTTTCCTACA 59.378 47.619 0.00 0.00 0.00 2.74
6235 6784 2.381725 AGTACGCAGCCTTTTCCTAC 57.618 50.000 0.00 0.00 0.00 3.18
6236 6785 5.009410 GTCTATAGTACGCAGCCTTTTCCTA 59.991 44.000 0.00 0.00 0.00 2.94
6237 6786 3.958798 TCTATAGTACGCAGCCTTTTCCT 59.041 43.478 0.00 0.00 0.00 3.36
6238 6787 4.049869 GTCTATAGTACGCAGCCTTTTCC 58.950 47.826 0.00 0.00 0.00 3.13
6239 6788 4.049869 GGTCTATAGTACGCAGCCTTTTC 58.950 47.826 0.00 0.00 0.00 2.29
6240 6789 3.181468 GGGTCTATAGTACGCAGCCTTTT 60.181 47.826 0.00 0.00 0.00 2.27
6241 6790 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
6242 6791 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
6243 6792 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
6244 6793 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
6245 6794 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
6246 6795 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
6247 6796 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
6248 6797 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
6249 6798 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
6259 6808 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
6260 6809 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
6261 6810 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
6262 6811 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
6263 6812 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
6264 6813 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
6265 6814 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
6266 6815 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
6273 6822 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
6277 6826 4.410400 GTGCAGGGTCCGGGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
6280 6829 4.722700 CTTGTGCAGGGTCCGGGG 62.723 72.222 0.00 0.00 0.00 5.73
6285 6834 4.329545 TCCCGCTTGTGCAGGGTC 62.330 66.667 7.78 0.00 46.04 4.46
6286 6835 4.335647 CTCCCGCTTGTGCAGGGT 62.336 66.667 7.78 0.00 46.04 4.34
6288 6837 3.315142 TAGCTCCCGCTTGTGCAGG 62.315 63.158 0.00 0.00 46.47 4.85
6289 6838 2.103042 GTAGCTCCCGCTTGTGCAG 61.103 63.158 0.00 0.00 46.47 4.41
6290 6839 2.047274 GTAGCTCCCGCTTGTGCA 60.047 61.111 0.00 0.00 46.47 4.57
6291 6840 1.450312 ATGTAGCTCCCGCTTGTGC 60.450 57.895 0.00 0.00 46.47 4.57
6292 6841 1.709147 GCATGTAGCTCCCGCTTGTG 61.709 60.000 0.00 0.00 46.47 3.33
6293 6842 1.450312 GCATGTAGCTCCCGCTTGT 60.450 57.895 0.00 0.00 46.47 3.16
6294 6843 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
6295 6844 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
6301 6850 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
6302 6851 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
6303 6852 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
6304 6853 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
6305 6854 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
6314 6863 3.886550 AAGAAAAGGGGGCAGCCCG 62.887 63.158 25.18 0.00 46.66 6.13
6315 6864 1.984570 GAAGAAAAGGGGGCAGCCC 60.985 63.158 24.23 24.23 44.51 5.19
6316 6865 0.542938 AAGAAGAAAAGGGGGCAGCC 60.543 55.000 1.26 1.26 0.00 4.85
6317 6866 1.342074 AAAGAAGAAAAGGGGGCAGC 58.658 50.000 0.00 0.00 0.00 5.25
6318 6867 2.826128 GGTAAAGAAGAAAAGGGGGCAG 59.174 50.000 0.00 0.00 0.00 4.85
6319 6868 2.492010 GGGTAAAGAAGAAAAGGGGGCA 60.492 50.000 0.00 0.00 0.00 5.36
6320 6869 2.176889 GGGTAAAGAAGAAAAGGGGGC 58.823 52.381 0.00 0.00 0.00 5.80
6321 6870 2.559026 GGGGGTAAAGAAGAAAAGGGGG 60.559 54.545 0.00 0.00 0.00 5.40
6322 6871 2.816411 GGGGGTAAAGAAGAAAAGGGG 58.184 52.381 0.00 0.00 0.00 4.79
6587 7223 6.074642 TGCGTAAATTGACTGATTAACAACG 58.925 36.000 0.00 0.00 0.00 4.10
6678 7314 4.598894 CTCCATGGAGCTCGGCCG 62.599 72.222 28.45 22.12 35.31 6.13
6701 7337 7.916128 TGATGCAATTTGAAAAATGCTTTTG 57.084 28.000 14.91 1.82 43.42 2.44
6704 7340 9.535878 AATTTTGATGCAATTTGAAAAATGCTT 57.464 22.222 14.91 9.80 43.42 3.91
6777 7413 6.706055 ACACAAGTGTACATTATGTCTTCG 57.294 37.500 0.00 0.00 42.90 3.79
6785 7421 9.751542 CCCAAAAATTTACACAAGTGTACATTA 57.248 29.630 19.32 2.70 42.34 1.90
6795 7431 8.818057 CGTATTTTGTCCCAAAAATTTACACAA 58.182 29.630 6.26 0.00 39.73 3.33
6800 7436 9.595823 TTCAACGTATTTTGTCCCAAAAATTTA 57.404 25.926 6.26 0.00 39.73 1.40
6809 7445 6.148811 TCTCTCATTTCAACGTATTTTGTCCC 59.851 38.462 0.00 0.00 0.00 4.46
6811 7447 8.230486 ACATCTCTCATTTCAACGTATTTTGTC 58.770 33.333 0.00 0.00 0.00 3.18
6845 7481 6.899393 TGTTCAAAAGCCTCATATTTGTCT 57.101 33.333 0.00 0.00 35.92 3.41
7196 7861 3.062763 CACTGATTGCTGACGAACTTCT 58.937 45.455 0.00 0.00 0.00 2.85
7197 7862 3.446184 CACTGATTGCTGACGAACTTC 57.554 47.619 0.00 0.00 0.00 3.01
7240 7905 9.632638 ATTTCATTACTACTCCAGTTTATGCAT 57.367 29.630 3.79 3.79 38.80 3.96
7249 7914 9.214957 TGTTACAACATTTCATTACTACTCCAG 57.785 33.333 0.00 0.00 33.17 3.86
7299 7967 5.105310 GCCATACTCGGTGATACTCCATATT 60.105 44.000 0.00 0.00 0.00 1.28
7307 7975 1.411246 TGGTGCCATACTCGGTGATAC 59.589 52.381 0.00 0.00 0.00 2.24
7372 8040 5.527214 CGGCTACCTTCATTGATATGTTGAA 59.473 40.000 0.00 0.00 33.34 2.69
7409 8077 2.157738 GCAGAATCAGTTCCAGTTGCT 58.842 47.619 0.00 0.00 34.81 3.91
7481 8188 1.134995 GCTTTGTTCAGGCATTAGGGC 60.135 52.381 0.00 0.00 43.80 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.