Multiple sequence alignment - TraesCS4D01G253000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G253000 chr4D 100.000 2405 0 0 1 2405 421558342 421555938 0.000000e+00 4442.0
1 TraesCS4D01G253000 chr4B 93.661 1751 65 20 504 2240 518688448 518686730 0.000000e+00 2577.0
2 TraesCS4D01G253000 chr4B 92.188 128 10 0 2278 2405 518678142 518678015 5.280000e-42 182.0
3 TraesCS4D01G253000 chr4B 95.000 40 2 0 2240 2279 518678342 518678303 2.000000e-06 63.9
4 TraesCS4D01G253000 chr4A 92.452 1709 86 21 714 2405 42260774 42262456 0.000000e+00 2401.0
5 TraesCS4D01G253000 chr4A 85.843 445 15 13 287 717 42254358 42254768 1.710000e-116 429.0
6 TraesCS4D01G253000 chr2A 80.377 795 88 29 1420 2172 727169116 727168348 2.100000e-150 542.0
7 TraesCS4D01G253000 chr2A 79.791 287 49 8 1065 1345 143276643 143276360 1.460000e-47 200.0
8 TraesCS4D01G253000 chr2D 80.139 287 48 8 1065 1345 135485688 135485405 3.130000e-49 206.0
9 TraesCS4D01G253000 chr2B 78.397 287 53 8 1065 1345 193210780 193210497 6.830000e-41 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G253000 chr4D 421555938 421558342 2404 True 4442 4442 100.000 1 2405 1 chr4D.!!$R1 2404
1 TraesCS4D01G253000 chr4B 518686730 518688448 1718 True 2577 2577 93.661 504 2240 1 chr4B.!!$R1 1736
2 TraesCS4D01G253000 chr4A 42260774 42262456 1682 False 2401 2401 92.452 714 2405 1 chr4A.!!$F2 1691
3 TraesCS4D01G253000 chr2A 727168348 727169116 768 True 542 542 80.377 1420 2172 1 chr2A.!!$R2 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
412 413 0.030101 ACGTCAAAAATGTGCCACCG 59.97 50.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2132 2200 0.363178 GCACAATGTTTCGATTGCGC 59.637 50.0 0.0 0.0 36.89 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.235891 TGCGAGGAAGAGAAGTACACA 58.764 47.619 0.00 0.00 0.00 3.72
21 22 2.030185 TGCGAGGAAGAGAAGTACACAC 60.030 50.000 0.00 0.00 0.00 3.82
22 23 2.229302 GCGAGGAAGAGAAGTACACACT 59.771 50.000 0.00 0.00 36.19 3.55
23 24 3.827625 CGAGGAAGAGAAGTACACACTG 58.172 50.000 0.00 0.00 34.36 3.66
24 25 3.366476 CGAGGAAGAGAAGTACACACTGG 60.366 52.174 0.00 0.00 34.36 4.00
25 26 3.574826 GAGGAAGAGAAGTACACACTGGT 59.425 47.826 0.00 0.00 34.36 4.00
26 27 4.737578 AGGAAGAGAAGTACACACTGGTA 58.262 43.478 0.00 0.00 34.36 3.25
27 28 4.767928 AGGAAGAGAAGTACACACTGGTAG 59.232 45.833 0.00 0.00 34.36 3.18
28 29 4.487019 GAAGAGAAGTACACACTGGTAGC 58.513 47.826 0.00 0.00 34.36 3.58
29 30 2.826725 AGAGAAGTACACACTGGTAGCC 59.173 50.000 0.00 0.00 34.36 3.93
30 31 1.544691 AGAAGTACACACTGGTAGCCG 59.455 52.381 0.00 0.00 34.36 5.52
31 32 1.542915 GAAGTACACACTGGTAGCCGA 59.457 52.381 0.00 0.00 34.36 5.54
32 33 0.886563 AGTACACACTGGTAGCCGAC 59.113 55.000 0.00 0.00 32.25 4.79
33 34 0.455633 GTACACACTGGTAGCCGACG 60.456 60.000 0.00 0.00 0.00 5.12
34 35 0.890542 TACACACTGGTAGCCGACGT 60.891 55.000 0.00 0.00 0.00 4.34
35 36 1.443872 CACACTGGTAGCCGACGTC 60.444 63.158 5.18 5.18 0.00 4.34
36 37 2.181021 CACTGGTAGCCGACGTCC 59.819 66.667 10.58 0.00 0.00 4.79
37 38 3.437795 ACTGGTAGCCGACGTCCG 61.438 66.667 10.58 4.53 38.18 4.79
38 39 4.849329 CTGGTAGCCGACGTCCGC 62.849 72.222 19.38 19.38 36.84 5.54
56 57 4.598894 CCATCCGCGGGAGAGCAG 62.599 72.222 27.83 7.31 34.05 4.24
63 64 3.443925 CGGGAGAGCAGCACGAGA 61.444 66.667 0.00 0.00 0.00 4.04
64 65 2.493973 GGGAGAGCAGCACGAGAG 59.506 66.667 0.00 0.00 0.00 3.20
65 66 2.049185 GGGAGAGCAGCACGAGAGA 61.049 63.158 0.00 0.00 0.00 3.10
66 67 1.433064 GGAGAGCAGCACGAGAGAG 59.567 63.158 0.00 0.00 0.00 3.20
67 68 1.029408 GGAGAGCAGCACGAGAGAGA 61.029 60.000 0.00 0.00 0.00 3.10
68 69 1.024271 GAGAGCAGCACGAGAGAGAT 58.976 55.000 0.00 0.00 0.00 2.75
69 70 0.740149 AGAGCAGCACGAGAGAGATG 59.260 55.000 0.00 0.00 41.06 2.90
70 71 0.455410 GAGCAGCACGAGAGAGATGT 59.545 55.000 0.00 0.00 40.24 3.06
71 72 0.173029 AGCAGCACGAGAGAGATGTG 59.827 55.000 0.00 0.00 40.24 3.21
72 73 0.172127 GCAGCACGAGAGAGATGTGA 59.828 55.000 0.00 0.00 40.24 3.58
73 74 1.403382 GCAGCACGAGAGAGATGTGAA 60.403 52.381 0.00 0.00 40.24 3.18
74 75 2.257894 CAGCACGAGAGAGATGTGAAC 58.742 52.381 0.00 0.00 35.66 3.18
75 76 1.135546 AGCACGAGAGAGATGTGAACG 60.136 52.381 0.00 0.00 35.66 3.95
76 77 1.901538 CACGAGAGAGATGTGAACGG 58.098 55.000 0.00 0.00 35.66 4.44
77 78 0.811915 ACGAGAGAGATGTGAACGGG 59.188 55.000 0.00 0.00 0.00 5.28
78 79 0.101399 CGAGAGAGATGTGAACGGGG 59.899 60.000 0.00 0.00 0.00 5.73
79 80 1.475403 GAGAGAGATGTGAACGGGGA 58.525 55.000 0.00 0.00 0.00 4.81
80 81 1.825474 GAGAGAGATGTGAACGGGGAA 59.175 52.381 0.00 0.00 0.00 3.97
81 82 1.827969 AGAGAGATGTGAACGGGGAAG 59.172 52.381 0.00 0.00 0.00 3.46
82 83 1.825474 GAGAGATGTGAACGGGGAAGA 59.175 52.381 0.00 0.00 0.00 2.87
83 84 2.233922 GAGAGATGTGAACGGGGAAGAA 59.766 50.000 0.00 0.00 0.00 2.52
84 85 2.234908 AGAGATGTGAACGGGGAAGAAG 59.765 50.000 0.00 0.00 0.00 2.85
85 86 2.233922 GAGATGTGAACGGGGAAGAAGA 59.766 50.000 0.00 0.00 0.00 2.87
86 87 2.840651 AGATGTGAACGGGGAAGAAGAT 59.159 45.455 0.00 0.00 0.00 2.40
87 88 2.472695 TGTGAACGGGGAAGAAGATG 57.527 50.000 0.00 0.00 0.00 2.90
88 89 1.974957 TGTGAACGGGGAAGAAGATGA 59.025 47.619 0.00 0.00 0.00 2.92
89 90 2.571653 TGTGAACGGGGAAGAAGATGAT 59.428 45.455 0.00 0.00 0.00 2.45
90 91 2.939103 GTGAACGGGGAAGAAGATGATG 59.061 50.000 0.00 0.00 0.00 3.07
91 92 2.571653 TGAACGGGGAAGAAGATGATGT 59.428 45.455 0.00 0.00 0.00 3.06
92 93 2.698855 ACGGGGAAGAAGATGATGTG 57.301 50.000 0.00 0.00 0.00 3.21
93 94 1.909302 ACGGGGAAGAAGATGATGTGT 59.091 47.619 0.00 0.00 0.00 3.72
94 95 2.305927 ACGGGGAAGAAGATGATGTGTT 59.694 45.455 0.00 0.00 0.00 3.32
95 96 2.679837 CGGGGAAGAAGATGATGTGTTG 59.320 50.000 0.00 0.00 0.00 3.33
96 97 3.619733 CGGGGAAGAAGATGATGTGTTGA 60.620 47.826 0.00 0.00 0.00 3.18
97 98 3.691609 GGGGAAGAAGATGATGTGTTGAC 59.308 47.826 0.00 0.00 0.00 3.18
98 99 3.691609 GGGAAGAAGATGATGTGTTGACC 59.308 47.826 0.00 0.00 0.00 4.02
99 100 3.691609 GGAAGAAGATGATGTGTTGACCC 59.308 47.826 0.00 0.00 0.00 4.46
100 101 4.326826 GAAGAAGATGATGTGTTGACCCA 58.673 43.478 0.00 0.00 0.00 4.51
101 102 3.679389 AGAAGATGATGTGTTGACCCAC 58.321 45.455 0.00 0.00 35.86 4.61
102 103 2.099141 AGATGATGTGTTGACCCACG 57.901 50.000 0.00 0.00 38.20 4.94
103 104 0.447801 GATGATGTGTTGACCCACGC 59.552 55.000 0.00 0.00 38.20 5.34
104 105 0.036732 ATGATGTGTTGACCCACGCT 59.963 50.000 0.00 0.00 38.20 5.07
105 106 0.682292 TGATGTGTTGACCCACGCTA 59.318 50.000 0.00 0.00 38.20 4.26
106 107 1.076332 GATGTGTTGACCCACGCTAC 58.924 55.000 0.00 0.00 38.20 3.58
107 108 0.321298 ATGTGTTGACCCACGCTACC 60.321 55.000 0.00 0.00 38.20 3.18
108 109 1.070105 GTGTTGACCCACGCTACCA 59.930 57.895 0.00 0.00 0.00 3.25
109 110 0.321298 GTGTTGACCCACGCTACCAT 60.321 55.000 0.00 0.00 0.00 3.55
110 111 0.321210 TGTTGACCCACGCTACCATG 60.321 55.000 0.00 0.00 0.00 3.66
111 112 0.036765 GTTGACCCACGCTACCATGA 60.037 55.000 0.00 0.00 0.00 3.07
112 113 0.249120 TTGACCCACGCTACCATGAG 59.751 55.000 0.00 0.00 0.00 2.90
113 114 0.613572 TGACCCACGCTACCATGAGA 60.614 55.000 0.00 0.00 0.00 3.27
114 115 0.103208 GACCCACGCTACCATGAGAG 59.897 60.000 0.00 0.00 0.00 3.20
115 116 0.324368 ACCCACGCTACCATGAGAGA 60.324 55.000 0.00 0.00 0.00 3.10
116 117 0.387202 CCCACGCTACCATGAGAGAG 59.613 60.000 0.00 0.00 0.00 3.20
117 118 0.249238 CCACGCTACCATGAGAGAGC 60.249 60.000 0.00 0.00 0.00 4.09
120 121 3.863681 GCTACCATGAGAGAGCGAG 57.136 57.895 0.00 0.00 0.00 5.03
121 122 1.028905 GCTACCATGAGAGAGCGAGT 58.971 55.000 0.00 0.00 0.00 4.18
122 123 1.407258 GCTACCATGAGAGAGCGAGTT 59.593 52.381 0.00 0.00 0.00 3.01
123 124 2.542824 GCTACCATGAGAGAGCGAGTTC 60.543 54.545 0.00 0.00 0.00 3.01
124 125 1.846007 ACCATGAGAGAGCGAGTTCT 58.154 50.000 0.00 0.00 0.00 3.01
125 126 2.175202 ACCATGAGAGAGCGAGTTCTT 58.825 47.619 0.00 0.00 0.00 2.52
126 127 2.094286 ACCATGAGAGAGCGAGTTCTTG 60.094 50.000 0.00 0.00 0.00 3.02
127 128 2.538437 CATGAGAGAGCGAGTTCTTGG 58.462 52.381 0.00 0.00 0.00 3.61
128 129 0.244994 TGAGAGAGCGAGTTCTTGGC 59.755 55.000 0.00 0.00 0.00 4.52
129 130 0.530288 GAGAGAGCGAGTTCTTGGCT 59.470 55.000 0.00 0.33 44.22 4.75
130 131 1.746220 GAGAGAGCGAGTTCTTGGCTA 59.254 52.381 0.00 0.00 41.33 3.93
131 132 1.748493 AGAGAGCGAGTTCTTGGCTAG 59.252 52.381 0.00 0.00 41.33 3.42
132 133 0.820871 AGAGCGAGTTCTTGGCTAGG 59.179 55.000 0.00 0.00 41.33 3.02
133 134 0.818296 GAGCGAGTTCTTGGCTAGGA 59.182 55.000 0.00 0.00 41.33 2.94
134 135 1.410882 GAGCGAGTTCTTGGCTAGGAT 59.589 52.381 0.00 0.00 41.33 3.24
135 136 1.834263 AGCGAGTTCTTGGCTAGGATT 59.166 47.619 0.00 0.00 39.28 3.01
136 137 2.237392 AGCGAGTTCTTGGCTAGGATTT 59.763 45.455 0.00 0.00 39.28 2.17
137 138 3.010420 GCGAGTTCTTGGCTAGGATTTT 58.990 45.455 0.00 0.00 0.00 1.82
138 139 3.181506 GCGAGTTCTTGGCTAGGATTTTG 60.182 47.826 0.00 0.00 0.00 2.44
139 140 3.181506 CGAGTTCTTGGCTAGGATTTTGC 60.182 47.826 0.00 0.00 0.00 3.68
140 141 4.013050 GAGTTCTTGGCTAGGATTTTGCT 58.987 43.478 0.00 0.00 0.00 3.91
141 142 4.411013 AGTTCTTGGCTAGGATTTTGCTT 58.589 39.130 0.00 0.00 0.00 3.91
142 143 4.835056 AGTTCTTGGCTAGGATTTTGCTTT 59.165 37.500 0.00 0.00 0.00 3.51
143 144 5.305386 AGTTCTTGGCTAGGATTTTGCTTTT 59.695 36.000 0.00 0.00 0.00 2.27
144 145 5.391312 TCTTGGCTAGGATTTTGCTTTTC 57.609 39.130 0.00 0.00 0.00 2.29
145 146 4.220602 TCTTGGCTAGGATTTTGCTTTTCC 59.779 41.667 0.00 0.00 0.00 3.13
146 147 2.831526 TGGCTAGGATTTTGCTTTTCCC 59.168 45.455 0.00 0.00 0.00 3.97
147 148 2.831526 GGCTAGGATTTTGCTTTTCCCA 59.168 45.455 0.00 0.00 0.00 4.37
148 149 3.118992 GGCTAGGATTTTGCTTTTCCCAG 60.119 47.826 0.00 0.00 0.00 4.45
149 150 3.511540 GCTAGGATTTTGCTTTTCCCAGT 59.488 43.478 0.00 0.00 0.00 4.00
150 151 4.705023 GCTAGGATTTTGCTTTTCCCAGTA 59.295 41.667 0.00 0.00 0.00 2.74
151 152 5.360999 GCTAGGATTTTGCTTTTCCCAGTAT 59.639 40.000 0.00 0.00 0.00 2.12
152 153 5.665916 AGGATTTTGCTTTTCCCAGTATG 57.334 39.130 0.00 0.00 0.00 2.39
167 168 4.114058 CAGTATGGCAAACAAATCCAGG 57.886 45.455 0.00 0.00 32.78 4.45
168 169 3.099141 AGTATGGCAAACAAATCCAGGG 58.901 45.455 0.00 0.00 32.78 4.45
169 170 2.028561 ATGGCAAACAAATCCAGGGT 57.971 45.000 0.00 0.00 32.78 4.34
170 171 1.799933 TGGCAAACAAATCCAGGGTT 58.200 45.000 0.00 0.00 0.00 4.11
171 172 1.691434 TGGCAAACAAATCCAGGGTTC 59.309 47.619 0.00 0.00 0.00 3.62
172 173 1.691434 GGCAAACAAATCCAGGGTTCA 59.309 47.619 0.00 0.00 0.00 3.18
173 174 2.289010 GGCAAACAAATCCAGGGTTCAG 60.289 50.000 0.00 0.00 0.00 3.02
174 175 2.627699 GCAAACAAATCCAGGGTTCAGA 59.372 45.455 0.00 0.00 0.00 3.27
175 176 3.259123 GCAAACAAATCCAGGGTTCAGAT 59.741 43.478 0.00 0.00 0.00 2.90
176 177 4.462483 GCAAACAAATCCAGGGTTCAGATA 59.538 41.667 0.00 0.00 0.00 1.98
177 178 5.047377 GCAAACAAATCCAGGGTTCAGATAA 60.047 40.000 0.00 0.00 0.00 1.75
178 179 6.518200 GCAAACAAATCCAGGGTTCAGATAAA 60.518 38.462 0.00 0.00 0.00 1.40
179 180 7.441017 CAAACAAATCCAGGGTTCAGATAAAA 58.559 34.615 0.00 0.00 0.00 1.52
180 181 7.797121 AACAAATCCAGGGTTCAGATAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
181 182 7.174107 ACAAATCCAGGGTTCAGATAAAATG 57.826 36.000 0.00 0.00 0.00 2.32
182 183 6.155049 ACAAATCCAGGGTTCAGATAAAATGG 59.845 38.462 0.00 0.00 0.00 3.16
183 184 4.249638 TCCAGGGTTCAGATAAAATGGG 57.750 45.455 0.00 0.00 0.00 4.00
184 185 3.855599 TCCAGGGTTCAGATAAAATGGGA 59.144 43.478 0.00 0.00 0.00 4.37
185 186 4.482025 TCCAGGGTTCAGATAAAATGGGAT 59.518 41.667 0.00 0.00 0.00 3.85
186 187 4.829492 CCAGGGTTCAGATAAAATGGGATC 59.171 45.833 0.00 0.00 0.00 3.36
187 188 5.448654 CAGGGTTCAGATAAAATGGGATCA 58.551 41.667 0.00 0.00 0.00 2.92
188 189 5.893255 CAGGGTTCAGATAAAATGGGATCAA 59.107 40.000 0.00 0.00 0.00 2.57
189 190 6.380846 CAGGGTTCAGATAAAATGGGATCAAA 59.619 38.462 0.00 0.00 0.00 2.69
190 191 6.608808 AGGGTTCAGATAAAATGGGATCAAAG 59.391 38.462 0.00 0.00 0.00 2.77
191 192 6.607198 GGGTTCAGATAAAATGGGATCAAAGA 59.393 38.462 0.00 0.00 0.00 2.52
192 193 7.201857 GGGTTCAGATAAAATGGGATCAAAGAG 60.202 40.741 0.00 0.00 0.00 2.85
193 194 7.201857 GGTTCAGATAAAATGGGATCAAAGAGG 60.202 40.741 0.00 0.00 0.00 3.69
194 195 6.973642 TCAGATAAAATGGGATCAAAGAGGT 58.026 36.000 0.00 0.00 0.00 3.85
195 196 7.056635 TCAGATAAAATGGGATCAAAGAGGTC 58.943 38.462 0.00 0.00 0.00 3.85
196 197 6.830324 CAGATAAAATGGGATCAAAGAGGTCA 59.170 38.462 0.00 0.00 0.00 4.02
197 198 7.013083 CAGATAAAATGGGATCAAAGAGGTCAG 59.987 40.741 0.00 0.00 0.00 3.51
198 199 3.659183 AATGGGATCAAAGAGGTCAGG 57.341 47.619 0.00 0.00 0.00 3.86
199 200 2.342406 TGGGATCAAAGAGGTCAGGA 57.658 50.000 0.00 0.00 0.00 3.86
200 201 2.850833 TGGGATCAAAGAGGTCAGGAT 58.149 47.619 0.00 0.00 0.00 3.24
201 202 4.007581 TGGGATCAAAGAGGTCAGGATA 57.992 45.455 0.00 0.00 0.00 2.59
202 203 3.711704 TGGGATCAAAGAGGTCAGGATAC 59.288 47.826 0.00 0.00 0.00 2.24
203 204 3.243907 GGGATCAAAGAGGTCAGGATACG 60.244 52.174 0.00 0.00 46.39 3.06
204 205 3.243907 GGATCAAAGAGGTCAGGATACGG 60.244 52.174 0.00 0.00 46.39 4.02
205 206 3.095912 TCAAAGAGGTCAGGATACGGA 57.904 47.619 0.00 0.00 46.39 4.69
213 214 1.776662 TCAGGATACGGACTTCAGGG 58.223 55.000 0.00 0.00 46.39 4.45
214 215 1.006758 TCAGGATACGGACTTCAGGGT 59.993 52.381 0.00 0.00 46.39 4.34
215 216 1.831736 CAGGATACGGACTTCAGGGTT 59.168 52.381 0.00 0.00 46.39 4.11
216 217 2.236395 CAGGATACGGACTTCAGGGTTT 59.764 50.000 0.00 0.00 46.39 3.27
217 218 2.910977 AGGATACGGACTTCAGGGTTTT 59.089 45.455 0.00 0.00 46.39 2.43
218 219 3.007635 GGATACGGACTTCAGGGTTTTG 58.992 50.000 0.00 0.00 0.00 2.44
219 220 3.307199 GGATACGGACTTCAGGGTTTTGA 60.307 47.826 0.00 0.00 0.00 2.69
220 221 2.721425 ACGGACTTCAGGGTTTTGAA 57.279 45.000 0.00 0.00 35.83 2.69
228 229 3.518992 TCAGGGTTTTGAAGGTTAGGG 57.481 47.619 0.00 0.00 0.00 3.53
229 230 2.787035 TCAGGGTTTTGAAGGTTAGGGT 59.213 45.455 0.00 0.00 0.00 4.34
230 231 3.205733 TCAGGGTTTTGAAGGTTAGGGTT 59.794 43.478 0.00 0.00 0.00 4.11
231 232 3.572682 CAGGGTTTTGAAGGTTAGGGTTC 59.427 47.826 0.00 0.00 0.00 3.62
232 233 2.555325 GGGTTTTGAAGGTTAGGGTTCG 59.445 50.000 0.00 0.00 0.00 3.95
233 234 3.216800 GGTTTTGAAGGTTAGGGTTCGT 58.783 45.455 0.00 0.00 0.00 3.85
234 235 3.633525 GGTTTTGAAGGTTAGGGTTCGTT 59.366 43.478 0.00 0.00 0.00 3.85
235 236 4.098349 GGTTTTGAAGGTTAGGGTTCGTTT 59.902 41.667 0.00 0.00 0.00 3.60
236 237 5.394443 GGTTTTGAAGGTTAGGGTTCGTTTT 60.394 40.000 0.00 0.00 0.00 2.43
237 238 4.904253 TTGAAGGTTAGGGTTCGTTTTG 57.096 40.909 0.00 0.00 0.00 2.44
238 239 2.619646 TGAAGGTTAGGGTTCGTTTTGC 59.380 45.455 0.00 0.00 0.00 3.68
239 240 1.232119 AGGTTAGGGTTCGTTTTGCG 58.768 50.000 0.00 0.00 43.01 4.85
240 241 0.946528 GGTTAGGGTTCGTTTTGCGT 59.053 50.000 0.00 0.00 42.13 5.24
241 242 1.069703 GGTTAGGGTTCGTTTTGCGTC 60.070 52.381 0.00 0.00 42.13 5.19
242 243 0.860533 TTAGGGTTCGTTTTGCGTCG 59.139 50.000 0.00 0.00 42.13 5.12
243 244 1.559149 TAGGGTTCGTTTTGCGTCGC 61.559 55.000 11.10 11.10 42.13 5.19
244 245 2.426261 GGTTCGTTTTGCGTCGCC 60.426 61.111 15.88 0.00 42.13 5.54
245 246 2.426261 GTTCGTTTTGCGTCGCCC 60.426 61.111 15.88 0.00 42.13 6.13
246 247 2.589442 TTCGTTTTGCGTCGCCCT 60.589 55.556 15.88 0.00 42.13 5.19
247 248 2.600475 TTCGTTTTGCGTCGCCCTC 61.600 57.895 15.88 1.90 42.13 4.30
248 249 2.981977 TTCGTTTTGCGTCGCCCTCT 62.982 55.000 15.88 0.00 42.13 3.69
249 250 1.735198 CGTTTTGCGTCGCCCTCTA 60.735 57.895 15.88 0.00 35.54 2.43
250 251 1.785951 GTTTTGCGTCGCCCTCTAC 59.214 57.895 15.88 2.19 0.00 2.59
251 252 0.947180 GTTTTGCGTCGCCCTCTACA 60.947 55.000 15.88 0.00 0.00 2.74
252 253 0.249953 TTTTGCGTCGCCCTCTACAA 60.250 50.000 15.88 0.00 0.00 2.41
253 254 0.947180 TTTGCGTCGCCCTCTACAAC 60.947 55.000 15.88 0.00 0.00 3.32
254 255 1.812686 TTGCGTCGCCCTCTACAACT 61.813 55.000 15.88 0.00 0.00 3.16
255 256 1.080025 GCGTCGCCCTCTACAACTT 60.080 57.895 5.75 0.00 0.00 2.66
256 257 1.077089 GCGTCGCCCTCTACAACTTC 61.077 60.000 5.75 0.00 0.00 3.01
257 258 0.242825 CGTCGCCCTCTACAACTTCA 59.757 55.000 0.00 0.00 0.00 3.02
258 259 1.732732 CGTCGCCCTCTACAACTTCAG 60.733 57.143 0.00 0.00 0.00 3.02
259 260 0.895530 TCGCCCTCTACAACTTCAGG 59.104 55.000 0.00 0.00 0.00 3.86
260 261 0.741221 CGCCCTCTACAACTTCAGGC 60.741 60.000 0.00 0.00 35.55 4.85
261 262 0.615850 GCCCTCTACAACTTCAGGCT 59.384 55.000 0.00 0.00 36.00 4.58
262 263 1.003696 GCCCTCTACAACTTCAGGCTT 59.996 52.381 0.00 0.00 36.00 4.35
263 264 2.553247 GCCCTCTACAACTTCAGGCTTT 60.553 50.000 0.00 0.00 36.00 3.51
264 265 3.077359 CCCTCTACAACTTCAGGCTTTG 58.923 50.000 0.00 0.00 0.00 2.77
265 266 3.496870 CCCTCTACAACTTCAGGCTTTGT 60.497 47.826 7.40 7.40 37.27 2.83
266 267 4.137543 CCTCTACAACTTCAGGCTTTGTT 58.862 43.478 7.53 0.00 35.18 2.83
267 268 4.580580 CCTCTACAACTTCAGGCTTTGTTT 59.419 41.667 7.53 0.00 35.18 2.83
268 269 5.067805 CCTCTACAACTTCAGGCTTTGTTTT 59.932 40.000 7.53 0.00 35.18 2.43
269 270 6.262273 CCTCTACAACTTCAGGCTTTGTTTTA 59.738 38.462 7.53 0.21 35.18 1.52
270 271 7.259290 TCTACAACTTCAGGCTTTGTTTTAG 57.741 36.000 7.53 8.56 35.18 1.85
271 272 7.051623 TCTACAACTTCAGGCTTTGTTTTAGA 58.948 34.615 7.53 10.32 35.18 2.10
272 273 5.891451 ACAACTTCAGGCTTTGTTTTAGAC 58.109 37.500 0.00 0.00 28.92 2.59
273 274 5.652452 ACAACTTCAGGCTTTGTTTTAGACT 59.348 36.000 0.00 0.00 28.92 3.24
274 275 6.152831 ACAACTTCAGGCTTTGTTTTAGACTT 59.847 34.615 0.00 0.00 28.92 3.01
275 276 6.378710 ACTTCAGGCTTTGTTTTAGACTTC 57.621 37.500 0.00 0.00 0.00 3.01
276 277 5.885912 ACTTCAGGCTTTGTTTTAGACTTCA 59.114 36.000 0.00 0.00 0.00 3.02
277 278 5.751243 TCAGGCTTTGTTTTAGACTTCAC 57.249 39.130 0.00 0.00 0.00 3.18
278 279 5.437060 TCAGGCTTTGTTTTAGACTTCACT 58.563 37.500 0.00 0.00 0.00 3.41
279 280 5.527582 TCAGGCTTTGTTTTAGACTTCACTC 59.472 40.000 0.00 0.00 0.00 3.51
280 281 4.511826 AGGCTTTGTTTTAGACTTCACTCG 59.488 41.667 0.00 0.00 0.00 4.18
281 282 4.212150 GCTTTGTTTTAGACTTCACTCGC 58.788 43.478 0.00 0.00 0.00 5.03
282 283 4.446234 CTTTGTTTTAGACTTCACTCGCG 58.554 43.478 0.00 0.00 0.00 5.87
283 284 3.358707 TGTTTTAGACTTCACTCGCGA 57.641 42.857 9.26 9.26 0.00 5.87
284 285 3.047796 TGTTTTAGACTTCACTCGCGAC 58.952 45.455 3.71 0.00 0.00 5.19
285 286 1.959747 TTTAGACTTCACTCGCGACG 58.040 50.000 3.71 4.12 0.00 5.12
286 287 1.150827 TTAGACTTCACTCGCGACGA 58.849 50.000 3.71 1.11 0.00 4.20
295 296 2.278792 TCGCGACGAGATGGCATG 60.279 61.111 3.71 0.00 31.07 4.06
296 297 3.993234 CGCGACGAGATGGCATGC 61.993 66.667 9.90 9.90 31.07 4.06
297 298 2.891936 GCGACGAGATGGCATGCA 60.892 61.111 21.36 6.13 31.07 3.96
298 299 2.879070 GCGACGAGATGGCATGCAG 61.879 63.158 21.36 5.56 31.07 4.41
299 300 1.227060 CGACGAGATGGCATGCAGA 60.227 57.895 21.36 5.45 0.00 4.26
300 301 0.807275 CGACGAGATGGCATGCAGAA 60.807 55.000 21.36 4.56 0.00 3.02
301 302 1.372582 GACGAGATGGCATGCAGAAA 58.627 50.000 21.36 1.71 0.00 2.52
302 303 1.945394 GACGAGATGGCATGCAGAAAT 59.055 47.619 21.36 7.07 0.00 2.17
303 304 1.674441 ACGAGATGGCATGCAGAAATG 59.326 47.619 21.36 7.31 0.00 2.32
309 310 2.939782 GCATGCAGAAATGCGAGTG 58.060 52.632 14.21 0.00 43.22 3.51
310 311 1.138047 GCATGCAGAAATGCGAGTGC 61.138 55.000 14.21 8.55 43.22 4.40
320 321 3.482783 GCGAGTGCGTCCAAGCTC 61.483 66.667 0.00 0.00 40.36 4.09
321 322 2.811317 CGAGTGCGTCCAAGCTCC 60.811 66.667 0.00 0.00 38.13 4.70
322 323 2.343758 GAGTGCGTCCAAGCTCCA 59.656 61.111 0.00 0.00 38.13 3.86
323 324 1.739562 GAGTGCGTCCAAGCTCCAG 60.740 63.158 0.00 0.00 38.13 3.86
324 325 2.159819 GAGTGCGTCCAAGCTCCAGA 62.160 60.000 0.00 0.00 38.13 3.86
325 326 1.739562 GTGCGTCCAAGCTCCAGAG 60.740 63.158 0.00 0.00 38.13 3.35
326 327 2.125350 GCGTCCAAGCTCCAGAGG 60.125 66.667 0.00 0.00 0.00 3.69
327 328 2.125350 CGTCCAAGCTCCAGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
328 329 2.125350 GTCCAAGCTCCAGAGGCG 60.125 66.667 0.00 0.00 34.52 5.52
329 330 2.283894 TCCAAGCTCCAGAGGCGA 60.284 61.111 0.00 0.00 34.52 5.54
330 331 2.125350 CCAAGCTCCAGAGGCGAC 60.125 66.667 0.00 0.00 34.52 5.19
331 332 2.659016 CAAGCTCCAGAGGCGACA 59.341 61.111 0.00 0.00 34.52 4.35
332 333 1.739562 CAAGCTCCAGAGGCGACAC 60.740 63.158 0.00 0.00 34.52 3.67
333 334 3.288308 AAGCTCCAGAGGCGACACG 62.288 63.158 0.00 0.00 34.52 4.49
334 335 3.749064 GCTCCAGAGGCGACACGA 61.749 66.667 0.00 0.00 0.00 4.35
335 336 2.179517 CTCCAGAGGCGACACGAC 59.820 66.667 0.00 0.00 33.59 4.34
336 337 2.596338 TCCAGAGGCGACACGACA 60.596 61.111 0.00 0.00 37.34 4.35
337 338 2.126307 CCAGAGGCGACACGACAG 60.126 66.667 0.00 0.00 37.34 3.51
338 339 2.126307 CAGAGGCGACACGACAGG 60.126 66.667 0.00 0.00 37.34 4.00
339 340 3.374402 AGAGGCGACACGACAGGG 61.374 66.667 0.00 0.00 37.34 4.45
340 341 4.436998 GAGGCGACACGACAGGGG 62.437 72.222 0.00 0.00 37.34 4.79
355 356 4.025401 GGGCGTCGGTGCAAACAG 62.025 66.667 0.00 0.00 36.28 3.16
356 357 2.970324 GGCGTCGGTGCAAACAGA 60.970 61.111 0.00 0.00 36.28 3.41
357 358 2.551270 GCGTCGGTGCAAACAGAG 59.449 61.111 0.00 0.00 34.15 3.35
358 359 1.954146 GCGTCGGTGCAAACAGAGA 60.954 57.895 0.00 0.00 34.15 3.10
359 360 1.891060 GCGTCGGTGCAAACAGAGAG 61.891 60.000 0.00 0.00 34.15 3.20
360 361 0.318699 CGTCGGTGCAAACAGAGAGA 60.319 55.000 0.00 0.00 0.00 3.10
361 362 1.140816 GTCGGTGCAAACAGAGAGAC 58.859 55.000 0.00 0.00 0.00 3.36
362 363 0.318699 TCGGTGCAAACAGAGAGACG 60.319 55.000 0.00 0.00 0.00 4.18
363 364 1.284982 CGGTGCAAACAGAGAGACGG 61.285 60.000 0.00 0.00 0.00 4.79
364 365 0.033504 GGTGCAAACAGAGAGACGGA 59.966 55.000 0.00 0.00 0.00 4.69
365 366 1.140816 GTGCAAACAGAGAGACGGAC 58.859 55.000 0.00 0.00 0.00 4.79
366 367 1.040646 TGCAAACAGAGAGACGGACT 58.959 50.000 0.00 0.00 0.00 3.85
367 368 1.269778 TGCAAACAGAGAGACGGACTG 60.270 52.381 0.00 0.00 37.62 3.51
368 369 1.000163 GCAAACAGAGAGACGGACTGA 60.000 52.381 0.00 0.00 35.85 3.41
369 370 2.353208 GCAAACAGAGAGACGGACTGAT 60.353 50.000 0.00 0.00 35.85 2.90
370 371 3.506810 CAAACAGAGAGACGGACTGATC 58.493 50.000 0.00 0.00 35.85 2.92
371 372 2.799126 ACAGAGAGACGGACTGATCT 57.201 50.000 0.00 0.00 35.85 2.75
372 373 2.364632 ACAGAGAGACGGACTGATCTG 58.635 52.381 13.75 13.75 41.23 2.90
373 374 1.675483 CAGAGAGACGGACTGATCTGG 59.325 57.143 4.49 0.00 36.34 3.86
374 375 1.028905 GAGAGACGGACTGATCTGGG 58.971 60.000 4.49 0.00 35.26 4.45
375 376 0.396417 AGAGACGGACTGATCTGGGG 60.396 60.000 4.49 0.00 35.26 4.96
376 377 1.381872 AGACGGACTGATCTGGGGG 60.382 63.158 4.49 0.00 35.26 5.40
377 378 3.083997 ACGGACTGATCTGGGGGC 61.084 66.667 4.49 0.00 35.26 5.80
378 379 3.083349 CGGACTGATCTGGGGGCA 61.083 66.667 4.49 0.00 0.00 5.36
379 380 2.669133 CGGACTGATCTGGGGGCAA 61.669 63.158 4.49 0.00 0.00 4.52
380 381 1.077429 GGACTGATCTGGGGGCAAC 60.077 63.158 4.49 0.00 0.00 4.17
381 382 1.566298 GGACTGATCTGGGGGCAACT 61.566 60.000 4.49 0.00 0.00 3.16
382 383 0.393537 GACTGATCTGGGGGCAACTG 60.394 60.000 4.49 0.00 0.00 3.16
383 384 1.077212 CTGATCTGGGGGCAACTGG 60.077 63.158 0.00 0.00 0.00 4.00
384 385 2.276740 GATCTGGGGGCAACTGGG 59.723 66.667 0.00 0.00 0.00 4.45
385 386 4.066139 ATCTGGGGGCAACTGGGC 62.066 66.667 0.00 0.00 42.44 5.36
401 402 4.599434 GCCGCGTGCACGTCAAAA 62.599 61.111 36.80 0.00 42.22 2.44
402 403 2.023461 CCGCGTGCACGTCAAAAA 59.977 55.556 36.80 0.00 42.22 1.94
403 404 1.369930 CCGCGTGCACGTCAAAAAT 60.370 52.632 36.80 0.00 42.22 1.82
404 405 1.595982 CCGCGTGCACGTCAAAAATG 61.596 55.000 36.80 17.41 42.22 2.32
405 406 0.927994 CGCGTGCACGTCAAAAATGT 60.928 50.000 36.80 0.00 42.22 2.71
406 407 0.498095 GCGTGCACGTCAAAAATGTG 59.502 50.000 36.80 8.30 46.01 3.21
411 412 1.486439 CACGTCAAAAATGTGCCACC 58.514 50.000 0.00 0.00 38.04 4.61
412 413 0.030101 ACGTCAAAAATGTGCCACCG 59.970 50.000 0.00 0.00 0.00 4.94
413 414 0.030101 CGTCAAAAATGTGCCACCGT 59.970 50.000 0.00 0.00 0.00 4.83
414 415 1.264557 CGTCAAAAATGTGCCACCGTA 59.735 47.619 0.00 0.00 0.00 4.02
415 416 2.657184 GTCAAAAATGTGCCACCGTAC 58.343 47.619 0.00 0.00 0.00 3.67
416 417 1.609555 TCAAAAATGTGCCACCGTACC 59.390 47.619 0.00 0.00 0.00 3.34
417 418 1.338337 CAAAAATGTGCCACCGTACCA 59.662 47.619 0.00 0.00 0.00 3.25
418 419 1.917872 AAAATGTGCCACCGTACCAT 58.082 45.000 0.00 0.00 0.00 3.55
419 420 1.173043 AAATGTGCCACCGTACCATG 58.827 50.000 0.00 0.00 0.00 3.66
420 421 0.037590 AATGTGCCACCGTACCATGT 59.962 50.000 0.00 0.00 0.00 3.21
421 422 0.676466 ATGTGCCACCGTACCATGTG 60.676 55.000 0.00 0.00 0.00 3.21
422 423 1.302192 GTGCCACCGTACCATGTGT 60.302 57.895 0.00 0.00 0.00 3.72
423 424 0.037139 GTGCCACCGTACCATGTGTA 60.037 55.000 0.00 0.00 0.00 2.90
424 425 0.248012 TGCCACCGTACCATGTGTAG 59.752 55.000 0.00 0.00 0.00 2.74
425 426 0.461339 GCCACCGTACCATGTGTAGG 60.461 60.000 0.00 0.00 35.54 3.18
426 427 0.461339 CCACCGTACCATGTGTAGGC 60.461 60.000 7.93 0.00 34.66 3.93
427 428 0.461339 CACCGTACCATGTGTAGGCC 60.461 60.000 0.00 0.00 34.66 5.19
428 429 1.227147 CCGTACCATGTGTAGGCCG 60.227 63.158 0.00 3.62 34.66 6.13
429 430 1.669049 CCGTACCATGTGTAGGCCGA 61.669 60.000 0.00 0.00 34.66 5.54
430 431 0.526954 CGTACCATGTGTAGGCCGAC 60.527 60.000 9.38 9.38 0.00 4.79
431 432 0.179092 GTACCATGTGTAGGCCGACC 60.179 60.000 13.95 5.59 0.00 4.79
432 433 0.615261 TACCATGTGTAGGCCGACCA 60.615 55.000 13.95 11.14 39.06 4.02
433 434 1.153369 CCATGTGTAGGCCGACCAG 60.153 63.158 13.95 0.67 39.06 4.00
434 435 1.596934 CATGTGTAGGCCGACCAGT 59.403 57.895 13.95 0.00 39.06 4.00
435 436 0.036388 CATGTGTAGGCCGACCAGTT 60.036 55.000 13.95 0.00 39.06 3.16
436 437 1.206132 CATGTGTAGGCCGACCAGTTA 59.794 52.381 13.95 0.00 39.06 2.24
437 438 0.604578 TGTGTAGGCCGACCAGTTAC 59.395 55.000 13.95 5.05 39.06 2.50
438 439 0.457337 GTGTAGGCCGACCAGTTACG 60.457 60.000 13.95 0.00 39.06 3.18
443 444 2.125673 CCGACCAGTTACGGCCAG 60.126 66.667 2.24 0.00 42.55 4.85
444 445 2.125673 CGACCAGTTACGGCCAGG 60.126 66.667 2.24 0.00 0.00 4.45
445 446 2.436115 GACCAGTTACGGCCAGGC 60.436 66.667 1.26 1.26 0.00 4.85
446 447 3.971109 GACCAGTTACGGCCAGGCC 62.971 68.421 22.33 22.33 46.75 5.19
455 456 2.520260 GGCCAGGCCCAGCTAATG 60.520 66.667 21.62 0.00 44.06 1.90
456 457 2.597340 GCCAGGCCCAGCTAATGA 59.403 61.111 0.00 0.00 0.00 2.57
457 458 1.527844 GCCAGGCCCAGCTAATGAG 60.528 63.158 0.00 0.00 0.00 2.90
458 459 1.987807 GCCAGGCCCAGCTAATGAGA 61.988 60.000 0.00 0.00 0.00 3.27
459 460 0.179034 CCAGGCCCAGCTAATGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
460 461 0.543277 CAGGCCCAGCTAATGAGACA 59.457 55.000 0.00 0.00 0.00 3.41
461 462 1.065199 CAGGCCCAGCTAATGAGACAA 60.065 52.381 0.00 0.00 0.00 3.18
462 463 1.211457 AGGCCCAGCTAATGAGACAAG 59.789 52.381 0.00 0.00 0.00 3.16
463 464 1.673168 GCCCAGCTAATGAGACAAGG 58.327 55.000 0.00 0.00 0.00 3.61
464 465 1.065126 GCCCAGCTAATGAGACAAGGT 60.065 52.381 0.00 0.00 0.00 3.50
465 466 2.170607 GCCCAGCTAATGAGACAAGGTA 59.829 50.000 0.00 0.00 0.00 3.08
466 467 3.181450 GCCCAGCTAATGAGACAAGGTAT 60.181 47.826 0.00 0.00 0.00 2.73
467 468 4.384056 CCCAGCTAATGAGACAAGGTATG 58.616 47.826 0.00 0.00 0.00 2.39
469 470 4.813161 CCAGCTAATGAGACAAGGTATGTG 59.187 45.833 0.00 0.00 44.12 3.21
470 471 4.813161 CAGCTAATGAGACAAGGTATGTGG 59.187 45.833 0.00 0.00 44.12 4.17
471 472 3.561725 GCTAATGAGACAAGGTATGTGGC 59.438 47.826 0.00 0.00 44.12 5.01
472 473 3.719268 AATGAGACAAGGTATGTGGCA 57.281 42.857 0.00 0.00 44.12 4.92
473 474 3.719268 ATGAGACAAGGTATGTGGCAA 57.281 42.857 0.00 0.00 44.12 4.52
474 475 3.719268 TGAGACAAGGTATGTGGCAAT 57.281 42.857 0.00 0.00 44.12 3.56
475 476 4.032960 TGAGACAAGGTATGTGGCAATT 57.967 40.909 0.00 0.00 44.12 2.32
476 477 3.758023 TGAGACAAGGTATGTGGCAATTG 59.242 43.478 0.00 0.00 44.12 2.32
477 478 3.091545 AGACAAGGTATGTGGCAATTGG 58.908 45.455 7.72 0.00 44.12 3.16
478 479 1.550072 ACAAGGTATGTGGCAATTGGC 59.450 47.619 24.20 24.20 41.93 4.52
488 489 0.968405 GGCAATTGGCAAGAGGTCAA 59.032 50.000 25.76 0.00 46.81 3.18
489 490 1.067354 GGCAATTGGCAAGAGGTCAAG 60.067 52.381 25.76 0.00 45.79 3.02
490 491 1.888512 GCAATTGGCAAGAGGTCAAGA 59.111 47.619 7.72 0.00 45.79 3.02
491 492 2.094854 GCAATTGGCAAGAGGTCAAGAG 60.095 50.000 7.72 0.00 45.79 2.85
492 493 1.831580 ATTGGCAAGAGGTCAAGAGC 58.168 50.000 5.96 0.00 45.79 4.09
493 494 0.250901 TTGGCAAGAGGTCAAGAGCC 60.251 55.000 0.00 0.00 35.84 4.70
494 495 1.377856 GGCAAGAGGTCAAGAGCCC 60.378 63.158 0.00 0.00 36.17 5.19
495 496 1.376466 GCAAGAGGTCAAGAGCCCA 59.624 57.895 0.00 0.00 0.00 5.36
496 497 0.250901 GCAAGAGGTCAAGAGCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
497 498 1.818642 CAAGAGGTCAAGAGCCCAAG 58.181 55.000 0.00 0.00 0.00 3.61
498 499 1.349026 CAAGAGGTCAAGAGCCCAAGA 59.651 52.381 0.00 0.00 0.00 3.02
499 500 1.274712 AGAGGTCAAGAGCCCAAGAG 58.725 55.000 0.00 0.00 0.00 2.85
500 501 0.980423 GAGGTCAAGAGCCCAAGAGT 59.020 55.000 0.00 0.00 0.00 3.24
501 502 0.689623 AGGTCAAGAGCCCAAGAGTG 59.310 55.000 0.00 0.00 0.00 3.51
502 503 0.322008 GGTCAAGAGCCCAAGAGTGG 60.322 60.000 0.00 0.00 45.53 4.00
509 510 2.433446 CCCAAGAGTGGCACTGCT 59.567 61.111 27.45 18.19 44.46 4.24
510 511 1.679311 CCCAAGAGTGGCACTGCTA 59.321 57.895 27.45 0.00 44.46 3.49
511 512 0.674895 CCCAAGAGTGGCACTGCTAC 60.675 60.000 27.45 10.64 44.46 3.58
551 552 6.411630 TGAACCGATTCAAAAATACCGTAG 57.588 37.500 0.00 0.00 41.99 3.51
552 553 5.933463 TGAACCGATTCAAAAATACCGTAGT 59.067 36.000 0.00 0.00 41.99 2.73
553 554 7.095910 TGAACCGATTCAAAAATACCGTAGTA 58.904 34.615 0.00 0.00 41.99 1.82
639 640 2.172717 CAGATTTCCTACCATTCCCGGT 59.827 50.000 0.00 0.00 43.46 5.28
712 722 2.103263 GCCAACAACAAACCCACCATTA 59.897 45.455 0.00 0.00 0.00 1.90
976 1004 0.611714 GCCTAGGGTTTTGAGTCCGA 59.388 55.000 11.72 0.00 0.00 4.55
977 1005 1.675116 GCCTAGGGTTTTGAGTCCGAC 60.675 57.143 11.72 0.00 0.00 4.79
978 1006 1.403780 CCTAGGGTTTTGAGTCCGACG 60.404 57.143 0.00 0.00 0.00 5.12
979 1007 0.037975 TAGGGTTTTGAGTCCGACGC 60.038 55.000 0.00 0.00 0.00 5.19
980 1008 2.322830 GGGTTTTGAGTCCGACGCC 61.323 63.158 0.00 0.00 0.00 5.68
981 1009 1.301479 GGTTTTGAGTCCGACGCCT 60.301 57.895 0.00 0.00 0.00 5.52
984 1012 2.758770 TTTTGAGTCCGACGCCTCCG 62.759 60.000 9.42 0.00 41.14 4.63
1050 1078 4.814294 GCCGGTGCCGACGAGATT 62.814 66.667 12.71 0.00 42.83 2.40
1051 1079 2.125673 CCGGTGCCGACGAGATTT 60.126 61.111 12.71 0.00 42.83 2.17
1562 1598 0.107654 CAGTAGCTGCTGGTTACCCC 60.108 60.000 22.82 0.00 33.00 4.95
1563 1599 1.223763 GTAGCTGCTGGTTACCCCC 59.776 63.158 13.43 0.00 0.00 5.40
1763 1821 5.598005 CCAAATTATGAGCAATCCACCCTTA 59.402 40.000 0.00 0.00 0.00 2.69
1790 1848 7.043961 TCTAATGGCAGTAGTATGTTCTGAG 57.956 40.000 20.11 0.00 0.00 3.35
1827 1885 7.254218 GCTTATATTTGAATTTTCTGTGCCAGC 60.254 37.037 0.00 0.00 0.00 4.85
1875 1933 6.772360 TTATGGTTTGAGCAATCATAGCAA 57.228 33.333 5.03 0.00 34.07 3.91
1959 2023 7.490725 GGATAATGATTCATATCTGACTGACCG 59.509 40.741 0.00 0.00 0.00 4.79
2022 2086 5.465935 GTCGAATTCTGAGACTCAAGAGTT 58.534 41.667 6.61 8.97 42.66 3.01
2107 2175 7.571244 CGGGTAATGTAATGCATATGAAGACAC 60.571 40.741 6.97 0.00 36.67 3.67
2132 2200 7.389884 ACCTATCTAATTGCTGAATATGCAGTG 59.610 37.037 12.50 0.00 41.71 3.66
2205 2276 1.458445 CATTGTGTCTCAGTCACTGCG 59.542 52.381 0.00 0.00 36.83 5.18
2207 2278 2.024319 GTGTCTCAGTCACTGCGCC 61.024 63.158 4.18 0.00 33.59 6.53
2208 2279 2.203082 TGTCTCAGTCACTGCGCCT 61.203 57.895 4.18 0.00 0.00 5.52
2265 2336 4.941873 TCGAGTCAGTATTTGCTACTCTGA 59.058 41.667 0.00 0.00 38.68 3.27
2292 2363 8.920665 CAATTATCTTATAGCAAGGAGTCTTCG 58.079 37.037 0.00 0.00 0.00 3.79
2301 2372 4.116747 CAAGGAGTCTTCGTATCTTGCT 57.883 45.455 0.00 0.00 0.00 3.91
2302 2373 5.250235 CAAGGAGTCTTCGTATCTTGCTA 57.750 43.478 0.00 0.00 0.00 3.49
2324 2395 3.543680 TGCTAGTGAAGGCCAAGTATC 57.456 47.619 5.01 0.00 0.00 2.24
2365 2436 7.100458 TCAGTAAATCTCGAGTTCATCATCA 57.900 36.000 13.13 0.00 0.00 3.07
2372 2443 9.994432 AAATCTCGAGTTCATCATCATTTAAAC 57.006 29.630 13.13 0.00 0.00 2.01
2373 2444 8.722480 ATCTCGAGTTCATCATCATTTAAACA 57.278 30.769 13.13 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.030185 GTGTGTACTTCTCTTCCTCGCA 60.030 50.000 0.00 0.00 0.00 5.10
1 2 2.229302 AGTGTGTACTTCTCTTCCTCGC 59.771 50.000 0.00 0.00 31.66 5.03
3 4 3.574826 ACCAGTGTGTACTTCTCTTCCTC 59.425 47.826 0.00 0.00 34.07 3.71
4 5 3.577919 ACCAGTGTGTACTTCTCTTCCT 58.422 45.455 0.00 0.00 34.07 3.36
5 6 4.618693 GCTACCAGTGTGTACTTCTCTTCC 60.619 50.000 0.00 0.00 34.07 3.46
6 7 4.487019 GCTACCAGTGTGTACTTCTCTTC 58.513 47.826 0.00 0.00 34.07 2.87
8 9 2.826725 GGCTACCAGTGTGTACTTCTCT 59.173 50.000 0.00 0.00 34.07 3.10
9 10 2.415625 CGGCTACCAGTGTGTACTTCTC 60.416 54.545 0.00 0.00 34.07 2.87
11 12 1.542915 TCGGCTACCAGTGTGTACTTC 59.457 52.381 0.00 0.00 34.07 3.01
12 13 1.271656 GTCGGCTACCAGTGTGTACTT 59.728 52.381 0.00 0.00 34.07 2.24
13 14 0.886563 GTCGGCTACCAGTGTGTACT 59.113 55.000 0.00 0.00 37.75 2.73
14 15 0.455633 CGTCGGCTACCAGTGTGTAC 60.456 60.000 0.00 0.00 0.00 2.90
15 16 0.890542 ACGTCGGCTACCAGTGTGTA 60.891 55.000 0.00 0.00 0.00 2.90
16 17 2.138656 GACGTCGGCTACCAGTGTGT 62.139 60.000 0.00 0.00 0.00 3.72
17 18 1.443872 GACGTCGGCTACCAGTGTG 60.444 63.158 0.00 0.00 0.00 3.82
18 19 2.633509 GGACGTCGGCTACCAGTGT 61.634 63.158 9.92 0.00 0.00 3.55
19 20 2.181021 GGACGTCGGCTACCAGTG 59.819 66.667 9.92 0.00 0.00 3.66
20 21 3.437795 CGGACGTCGGCTACCAGT 61.438 66.667 9.92 0.00 34.75 4.00
21 22 4.849329 GCGGACGTCGGCTACCAG 62.849 72.222 33.17 8.16 38.87 4.00
39 40 4.598894 CTGCTCTCCCGCGGATGG 62.599 72.222 30.73 16.09 38.57 3.51
46 47 3.408501 CTCTCGTGCTGCTCTCCCG 62.409 68.421 0.00 0.00 0.00 5.14
47 48 2.003658 CTCTCTCGTGCTGCTCTCCC 62.004 65.000 0.00 0.00 0.00 4.30
48 49 1.029408 TCTCTCTCGTGCTGCTCTCC 61.029 60.000 0.00 0.00 0.00 3.71
49 50 1.024271 ATCTCTCTCGTGCTGCTCTC 58.976 55.000 0.00 0.00 0.00 3.20
50 51 0.740149 CATCTCTCTCGTGCTGCTCT 59.260 55.000 0.00 0.00 0.00 4.09
51 52 0.455410 ACATCTCTCTCGTGCTGCTC 59.545 55.000 0.00 0.00 0.00 4.26
52 53 0.173029 CACATCTCTCTCGTGCTGCT 59.827 55.000 0.00 0.00 0.00 4.24
53 54 0.172127 TCACATCTCTCTCGTGCTGC 59.828 55.000 0.00 0.00 0.00 5.25
54 55 2.257894 GTTCACATCTCTCTCGTGCTG 58.742 52.381 0.00 0.00 0.00 4.41
55 56 1.135546 CGTTCACATCTCTCTCGTGCT 60.136 52.381 0.00 0.00 0.00 4.40
56 57 1.263776 CGTTCACATCTCTCTCGTGC 58.736 55.000 0.00 0.00 0.00 5.34
57 58 1.468224 CCCGTTCACATCTCTCTCGTG 60.468 57.143 0.00 0.00 0.00 4.35
58 59 0.811915 CCCGTTCACATCTCTCTCGT 59.188 55.000 0.00 0.00 0.00 4.18
59 60 0.101399 CCCCGTTCACATCTCTCTCG 59.899 60.000 0.00 0.00 0.00 4.04
60 61 1.475403 TCCCCGTTCACATCTCTCTC 58.525 55.000 0.00 0.00 0.00 3.20
61 62 1.827969 CTTCCCCGTTCACATCTCTCT 59.172 52.381 0.00 0.00 0.00 3.10
62 63 1.825474 TCTTCCCCGTTCACATCTCTC 59.175 52.381 0.00 0.00 0.00 3.20
63 64 1.938585 TCTTCCCCGTTCACATCTCT 58.061 50.000 0.00 0.00 0.00 3.10
64 65 2.233922 TCTTCTTCCCCGTTCACATCTC 59.766 50.000 0.00 0.00 0.00 2.75
65 66 2.257207 TCTTCTTCCCCGTTCACATCT 58.743 47.619 0.00 0.00 0.00 2.90
66 67 2.762535 TCTTCTTCCCCGTTCACATC 57.237 50.000 0.00 0.00 0.00 3.06
67 68 2.571653 TCATCTTCTTCCCCGTTCACAT 59.428 45.455 0.00 0.00 0.00 3.21
68 69 1.974957 TCATCTTCTTCCCCGTTCACA 59.025 47.619 0.00 0.00 0.00 3.58
69 70 2.762535 TCATCTTCTTCCCCGTTCAC 57.237 50.000 0.00 0.00 0.00 3.18
70 71 2.571653 ACATCATCTTCTTCCCCGTTCA 59.428 45.455 0.00 0.00 0.00 3.18
71 72 2.939103 CACATCATCTTCTTCCCCGTTC 59.061 50.000 0.00 0.00 0.00 3.95
72 73 2.305927 ACACATCATCTTCTTCCCCGTT 59.694 45.455 0.00 0.00 0.00 4.44
73 74 1.909302 ACACATCATCTTCTTCCCCGT 59.091 47.619 0.00 0.00 0.00 5.28
74 75 2.679837 CAACACATCATCTTCTTCCCCG 59.320 50.000 0.00 0.00 0.00 5.73
75 76 3.691609 GTCAACACATCATCTTCTTCCCC 59.308 47.826 0.00 0.00 0.00 4.81
76 77 3.691609 GGTCAACACATCATCTTCTTCCC 59.308 47.826 0.00 0.00 0.00 3.97
77 78 3.691609 GGGTCAACACATCATCTTCTTCC 59.308 47.826 0.00 0.00 0.00 3.46
78 79 4.154918 GTGGGTCAACACATCATCTTCTTC 59.845 45.833 0.00 0.00 40.99 2.87
79 80 4.074970 GTGGGTCAACACATCATCTTCTT 58.925 43.478 0.00 0.00 40.99 2.52
80 81 3.679389 GTGGGTCAACACATCATCTTCT 58.321 45.455 0.00 0.00 40.99 2.85
81 82 2.416547 CGTGGGTCAACACATCATCTTC 59.583 50.000 0.00 0.00 41.38 2.87
82 83 2.426522 CGTGGGTCAACACATCATCTT 58.573 47.619 0.00 0.00 41.38 2.40
83 84 1.945819 GCGTGGGTCAACACATCATCT 60.946 52.381 0.00 0.00 41.38 2.90
84 85 0.447801 GCGTGGGTCAACACATCATC 59.552 55.000 0.00 0.00 41.38 2.92
85 86 0.036732 AGCGTGGGTCAACACATCAT 59.963 50.000 0.00 0.00 41.38 2.45
86 87 0.682292 TAGCGTGGGTCAACACATCA 59.318 50.000 0.00 0.00 41.38 3.07
87 88 1.076332 GTAGCGTGGGTCAACACATC 58.924 55.000 0.00 0.00 41.38 3.06
88 89 0.321298 GGTAGCGTGGGTCAACACAT 60.321 55.000 0.00 0.00 41.38 3.21
89 90 1.070105 GGTAGCGTGGGTCAACACA 59.930 57.895 0.00 0.00 41.38 3.72
90 91 0.321298 ATGGTAGCGTGGGTCAACAC 60.321 55.000 0.00 0.00 37.99 3.32
91 92 0.321210 CATGGTAGCGTGGGTCAACA 60.321 55.000 6.22 0.00 0.00 3.33
92 93 0.036765 TCATGGTAGCGTGGGTCAAC 60.037 55.000 13.92 0.00 0.00 3.18
93 94 0.249120 CTCATGGTAGCGTGGGTCAA 59.751 55.000 13.92 0.00 0.00 3.18
94 95 0.613572 TCTCATGGTAGCGTGGGTCA 60.614 55.000 13.54 0.00 0.00 4.02
95 96 0.103208 CTCTCATGGTAGCGTGGGTC 59.897 60.000 13.54 0.00 0.00 4.46
96 97 0.324368 TCTCTCATGGTAGCGTGGGT 60.324 55.000 13.54 0.00 0.00 4.51
97 98 0.387202 CTCTCTCATGGTAGCGTGGG 59.613 60.000 13.92 11.00 0.00 4.61
98 99 0.249238 GCTCTCTCATGGTAGCGTGG 60.249 60.000 13.92 5.45 0.00 4.94
99 100 3.264666 GCTCTCTCATGGTAGCGTG 57.735 57.895 7.85 7.85 0.00 5.34
102 103 1.028905 ACTCGCTCTCTCATGGTAGC 58.971 55.000 0.00 0.00 0.00 3.58
103 104 2.948979 AGAACTCGCTCTCTCATGGTAG 59.051 50.000 0.00 0.00 0.00 3.18
104 105 3.006112 AGAACTCGCTCTCTCATGGTA 57.994 47.619 0.00 0.00 0.00 3.25
105 106 1.846007 AGAACTCGCTCTCTCATGGT 58.154 50.000 0.00 0.00 0.00 3.55
106 107 2.538437 CAAGAACTCGCTCTCTCATGG 58.462 52.381 0.00 0.00 0.00 3.66
107 108 2.538437 CCAAGAACTCGCTCTCTCATG 58.462 52.381 0.00 0.00 0.00 3.07
108 109 1.134848 GCCAAGAACTCGCTCTCTCAT 60.135 52.381 0.00 0.00 0.00 2.90
109 110 0.244994 GCCAAGAACTCGCTCTCTCA 59.755 55.000 0.00 0.00 0.00 3.27
110 111 0.530288 AGCCAAGAACTCGCTCTCTC 59.470 55.000 0.00 0.00 0.00 3.20
111 112 1.748493 CTAGCCAAGAACTCGCTCTCT 59.252 52.381 0.00 0.00 34.03 3.10
112 113 1.202359 CCTAGCCAAGAACTCGCTCTC 60.202 57.143 0.00 0.00 34.03 3.20
113 114 0.820871 CCTAGCCAAGAACTCGCTCT 59.179 55.000 0.00 0.00 34.03 4.09
114 115 0.818296 TCCTAGCCAAGAACTCGCTC 59.182 55.000 0.00 0.00 34.03 5.03
115 116 1.490574 ATCCTAGCCAAGAACTCGCT 58.509 50.000 0.00 0.00 36.63 4.93
116 117 2.317530 AATCCTAGCCAAGAACTCGC 57.682 50.000 0.00 0.00 0.00 5.03
117 118 3.181506 GCAAAATCCTAGCCAAGAACTCG 60.182 47.826 0.00 0.00 0.00 4.18
118 119 4.013050 AGCAAAATCCTAGCCAAGAACTC 58.987 43.478 0.00 0.00 0.00 3.01
119 120 4.039603 AGCAAAATCCTAGCCAAGAACT 57.960 40.909 0.00 0.00 0.00 3.01
120 121 4.790765 AAGCAAAATCCTAGCCAAGAAC 57.209 40.909 0.00 0.00 0.00 3.01
121 122 5.279456 GGAAAAGCAAAATCCTAGCCAAGAA 60.279 40.000 0.00 0.00 0.00 2.52
122 123 4.220602 GGAAAAGCAAAATCCTAGCCAAGA 59.779 41.667 0.00 0.00 0.00 3.02
123 124 4.498241 GGAAAAGCAAAATCCTAGCCAAG 58.502 43.478 0.00 0.00 0.00 3.61
124 125 3.260632 GGGAAAAGCAAAATCCTAGCCAA 59.739 43.478 0.00 0.00 33.61 4.52
125 126 2.831526 GGGAAAAGCAAAATCCTAGCCA 59.168 45.455 0.00 0.00 33.61 4.75
126 127 2.831526 TGGGAAAAGCAAAATCCTAGCC 59.168 45.455 0.00 0.00 33.61 3.93
127 128 3.511540 ACTGGGAAAAGCAAAATCCTAGC 59.488 43.478 9.92 0.00 43.45 3.42
128 129 6.183360 CCATACTGGGAAAAGCAAAATCCTAG 60.183 42.308 8.86 8.86 44.72 3.02
129 130 5.656416 CCATACTGGGAAAAGCAAAATCCTA 59.344 40.000 0.00 0.00 32.67 2.94
130 131 4.467438 CCATACTGGGAAAAGCAAAATCCT 59.533 41.667 0.00 0.00 32.67 3.24
131 132 4.758688 CCATACTGGGAAAAGCAAAATCC 58.241 43.478 0.00 0.00 32.67 3.01
132 133 4.183865 GCCATACTGGGAAAAGCAAAATC 58.816 43.478 0.00 0.00 38.19 2.17
133 134 3.582208 TGCCATACTGGGAAAAGCAAAAT 59.418 39.130 0.00 0.00 33.84 1.82
134 135 2.968574 TGCCATACTGGGAAAAGCAAAA 59.031 40.909 0.00 0.00 33.84 2.44
135 136 2.603021 TGCCATACTGGGAAAAGCAAA 58.397 42.857 0.00 0.00 33.84 3.68
136 137 2.300956 TGCCATACTGGGAAAAGCAA 57.699 45.000 0.00 0.00 33.84 3.91
137 138 2.300956 TTGCCATACTGGGAAAAGCA 57.699 45.000 0.00 0.00 45.09 3.91
142 143 3.513515 GGATTTGTTTGCCATACTGGGAA 59.486 43.478 0.00 0.00 46.43 3.97
143 144 3.096092 GGATTTGTTTGCCATACTGGGA 58.904 45.455 0.00 0.00 38.19 4.37
144 145 2.830923 TGGATTTGTTTGCCATACTGGG 59.169 45.455 0.00 0.00 38.19 4.45
145 146 3.119029 CCTGGATTTGTTTGCCATACTGG 60.119 47.826 0.00 0.00 41.55 4.00
146 147 3.119029 CCCTGGATTTGTTTGCCATACTG 60.119 47.826 0.00 0.00 0.00 2.74
147 148 3.099141 CCCTGGATTTGTTTGCCATACT 58.901 45.455 0.00 0.00 0.00 2.12
148 149 2.831526 ACCCTGGATTTGTTTGCCATAC 59.168 45.455 0.00 0.00 0.00 2.39
149 150 3.182887 ACCCTGGATTTGTTTGCCATA 57.817 42.857 0.00 0.00 0.00 2.74
150 151 2.028561 ACCCTGGATTTGTTTGCCAT 57.971 45.000 0.00 0.00 0.00 4.40
151 152 1.691434 GAACCCTGGATTTGTTTGCCA 59.309 47.619 0.00 0.00 0.00 4.92
152 153 1.691434 TGAACCCTGGATTTGTTTGCC 59.309 47.619 0.00 0.00 0.00 4.52
153 154 2.627699 TCTGAACCCTGGATTTGTTTGC 59.372 45.455 0.00 0.00 0.00 3.68
154 155 6.588719 TTATCTGAACCCTGGATTTGTTTG 57.411 37.500 0.00 0.00 0.00 2.93
155 156 7.610580 TTTTATCTGAACCCTGGATTTGTTT 57.389 32.000 0.00 0.00 0.00 2.83
156 157 7.310609 CCATTTTATCTGAACCCTGGATTTGTT 60.311 37.037 0.00 0.00 0.00 2.83
157 158 6.155049 CCATTTTATCTGAACCCTGGATTTGT 59.845 38.462 0.00 0.00 0.00 2.83
158 159 6.407299 CCCATTTTATCTGAACCCTGGATTTG 60.407 42.308 0.00 0.00 0.00 2.32
159 160 5.662657 CCCATTTTATCTGAACCCTGGATTT 59.337 40.000 0.00 0.00 0.00 2.17
160 161 5.043432 TCCCATTTTATCTGAACCCTGGATT 60.043 40.000 0.00 0.00 0.00 3.01
161 162 4.482025 TCCCATTTTATCTGAACCCTGGAT 59.518 41.667 0.00 0.00 0.00 3.41
162 163 3.855599 TCCCATTTTATCTGAACCCTGGA 59.144 43.478 0.00 0.00 0.00 3.86
163 164 4.249638 TCCCATTTTATCTGAACCCTGG 57.750 45.455 0.00 0.00 0.00 4.45
164 165 5.448654 TGATCCCATTTTATCTGAACCCTG 58.551 41.667 0.00 0.00 0.00 4.45
165 166 5.732331 TGATCCCATTTTATCTGAACCCT 57.268 39.130 0.00 0.00 0.00 4.34
166 167 6.607198 TCTTTGATCCCATTTTATCTGAACCC 59.393 38.462 0.00 0.00 0.00 4.11
167 168 7.201857 CCTCTTTGATCCCATTTTATCTGAACC 60.202 40.741 0.00 0.00 0.00 3.62
168 169 7.340487 ACCTCTTTGATCCCATTTTATCTGAAC 59.660 37.037 0.00 0.00 0.00 3.18
169 170 7.413446 ACCTCTTTGATCCCATTTTATCTGAA 58.587 34.615 0.00 0.00 0.00 3.02
170 171 6.973642 ACCTCTTTGATCCCATTTTATCTGA 58.026 36.000 0.00 0.00 0.00 3.27
171 172 6.830324 TGACCTCTTTGATCCCATTTTATCTG 59.170 38.462 0.00 0.00 0.00 2.90
172 173 6.973642 TGACCTCTTTGATCCCATTTTATCT 58.026 36.000 0.00 0.00 0.00 1.98
173 174 6.264067 CCTGACCTCTTTGATCCCATTTTATC 59.736 42.308 0.00 0.00 0.00 1.75
174 175 6.068853 TCCTGACCTCTTTGATCCCATTTTAT 60.069 38.462 0.00 0.00 0.00 1.40
175 176 5.252863 TCCTGACCTCTTTGATCCCATTTTA 59.747 40.000 0.00 0.00 0.00 1.52
176 177 4.044571 TCCTGACCTCTTTGATCCCATTTT 59.955 41.667 0.00 0.00 0.00 1.82
177 178 3.593328 TCCTGACCTCTTTGATCCCATTT 59.407 43.478 0.00 0.00 0.00 2.32
178 179 3.192944 TCCTGACCTCTTTGATCCCATT 58.807 45.455 0.00 0.00 0.00 3.16
179 180 2.850833 TCCTGACCTCTTTGATCCCAT 58.149 47.619 0.00 0.00 0.00 4.00
180 181 2.342406 TCCTGACCTCTTTGATCCCA 57.658 50.000 0.00 0.00 0.00 4.37
181 182 3.243907 CGTATCCTGACCTCTTTGATCCC 60.244 52.174 0.00 0.00 0.00 3.85
182 183 3.243907 CCGTATCCTGACCTCTTTGATCC 60.244 52.174 0.00 0.00 0.00 3.36
183 184 3.637229 TCCGTATCCTGACCTCTTTGATC 59.363 47.826 0.00 0.00 0.00 2.92
184 185 3.385111 GTCCGTATCCTGACCTCTTTGAT 59.615 47.826 0.00 0.00 0.00 2.57
185 186 2.758979 GTCCGTATCCTGACCTCTTTGA 59.241 50.000 0.00 0.00 0.00 2.69
186 187 2.761208 AGTCCGTATCCTGACCTCTTTG 59.239 50.000 0.00 0.00 31.76 2.77
187 188 3.103080 AGTCCGTATCCTGACCTCTTT 57.897 47.619 0.00 0.00 31.76 2.52
188 189 2.830651 AGTCCGTATCCTGACCTCTT 57.169 50.000 0.00 0.00 31.76 2.85
189 190 2.025226 TGAAGTCCGTATCCTGACCTCT 60.025 50.000 0.00 0.00 31.76 3.69
190 191 2.359531 CTGAAGTCCGTATCCTGACCTC 59.640 54.545 0.00 0.00 31.76 3.85
191 192 2.379972 CTGAAGTCCGTATCCTGACCT 58.620 52.381 0.00 0.00 31.76 3.85
192 193 1.409427 CCTGAAGTCCGTATCCTGACC 59.591 57.143 0.00 0.00 31.76 4.02
193 194 1.409427 CCCTGAAGTCCGTATCCTGAC 59.591 57.143 0.00 0.00 0.00 3.51
194 195 1.006758 ACCCTGAAGTCCGTATCCTGA 59.993 52.381 0.00 0.00 0.00 3.86
195 196 1.486211 ACCCTGAAGTCCGTATCCTG 58.514 55.000 0.00 0.00 0.00 3.86
196 197 2.249309 AACCCTGAAGTCCGTATCCT 57.751 50.000 0.00 0.00 0.00 3.24
197 198 3.007635 CAAAACCCTGAAGTCCGTATCC 58.992 50.000 0.00 0.00 0.00 2.59
198 199 3.934068 TCAAAACCCTGAAGTCCGTATC 58.066 45.455 0.00 0.00 0.00 2.24
199 200 4.324267 CTTCAAAACCCTGAAGTCCGTAT 58.676 43.478 5.38 0.00 44.86 3.06
200 201 3.735591 CTTCAAAACCCTGAAGTCCGTA 58.264 45.455 5.38 0.00 44.86 4.02
201 202 2.572290 CTTCAAAACCCTGAAGTCCGT 58.428 47.619 5.38 0.00 44.86 4.69
207 208 3.205733 ACCCTAACCTTCAAAACCCTGAA 59.794 43.478 0.00 0.00 34.22 3.02
208 209 2.787035 ACCCTAACCTTCAAAACCCTGA 59.213 45.455 0.00 0.00 0.00 3.86
209 210 3.238788 ACCCTAACCTTCAAAACCCTG 57.761 47.619 0.00 0.00 0.00 4.45
210 211 3.749632 CGAACCCTAACCTTCAAAACCCT 60.750 47.826 0.00 0.00 0.00 4.34
211 212 2.555325 CGAACCCTAACCTTCAAAACCC 59.445 50.000 0.00 0.00 0.00 4.11
212 213 3.216800 ACGAACCCTAACCTTCAAAACC 58.783 45.455 0.00 0.00 0.00 3.27
213 214 4.906065 AACGAACCCTAACCTTCAAAAC 57.094 40.909 0.00 0.00 0.00 2.43
214 215 5.652518 CAAAACGAACCCTAACCTTCAAAA 58.347 37.500 0.00 0.00 0.00 2.44
215 216 4.440387 GCAAAACGAACCCTAACCTTCAAA 60.440 41.667 0.00 0.00 0.00 2.69
216 217 3.067040 GCAAAACGAACCCTAACCTTCAA 59.933 43.478 0.00 0.00 0.00 2.69
217 218 2.619646 GCAAAACGAACCCTAACCTTCA 59.380 45.455 0.00 0.00 0.00 3.02
218 219 3.278367 GCAAAACGAACCCTAACCTTC 57.722 47.619 0.00 0.00 0.00 3.46
232 233 0.947180 TGTAGAGGGCGACGCAAAAC 60.947 55.000 23.09 11.95 0.00 2.43
233 234 0.249953 TTGTAGAGGGCGACGCAAAA 60.250 50.000 23.09 0.00 0.00 2.44
234 235 0.947180 GTTGTAGAGGGCGACGCAAA 60.947 55.000 23.09 0.00 0.00 3.68
235 236 1.373748 GTTGTAGAGGGCGACGCAA 60.374 57.895 23.09 1.91 0.00 4.85
236 237 1.812686 AAGTTGTAGAGGGCGACGCA 61.813 55.000 23.09 0.00 0.00 5.24
237 238 1.077089 GAAGTTGTAGAGGGCGACGC 61.077 60.000 12.43 12.43 0.00 5.19
238 239 0.242825 TGAAGTTGTAGAGGGCGACG 59.757 55.000 0.00 0.00 0.00 5.12
239 240 1.404315 CCTGAAGTTGTAGAGGGCGAC 60.404 57.143 0.00 0.00 0.00 5.19
240 241 0.895530 CCTGAAGTTGTAGAGGGCGA 59.104 55.000 0.00 0.00 0.00 5.54
241 242 0.741221 GCCTGAAGTTGTAGAGGGCG 60.741 60.000 0.00 0.00 0.00 6.13
242 243 0.615850 AGCCTGAAGTTGTAGAGGGC 59.384 55.000 0.00 0.00 38.50 5.19
243 244 3.077359 CAAAGCCTGAAGTTGTAGAGGG 58.923 50.000 0.00 0.00 0.00 4.30
244 245 3.744660 ACAAAGCCTGAAGTTGTAGAGG 58.255 45.455 0.00 0.00 33.80 3.69
245 246 5.757850 AAACAAAGCCTGAAGTTGTAGAG 57.242 39.130 0.00 0.00 34.46 2.43
246 247 7.012044 GTCTAAAACAAAGCCTGAAGTTGTAGA 59.988 37.037 0.00 0.00 38.06 2.59
247 248 7.012421 AGTCTAAAACAAAGCCTGAAGTTGTAG 59.988 37.037 0.00 0.00 34.46 2.74
248 249 6.826741 AGTCTAAAACAAAGCCTGAAGTTGTA 59.173 34.615 0.00 0.00 34.46 2.41
249 250 5.652452 AGTCTAAAACAAAGCCTGAAGTTGT 59.348 36.000 0.00 0.00 37.07 3.32
250 251 6.136541 AGTCTAAAACAAAGCCTGAAGTTG 57.863 37.500 0.00 0.00 0.00 3.16
251 252 6.377146 TGAAGTCTAAAACAAAGCCTGAAGTT 59.623 34.615 0.00 0.00 0.00 2.66
252 253 5.885912 TGAAGTCTAAAACAAAGCCTGAAGT 59.114 36.000 0.00 0.00 0.00 3.01
253 254 6.038714 AGTGAAGTCTAAAACAAAGCCTGAAG 59.961 38.462 0.00 0.00 0.00 3.02
254 255 5.885912 AGTGAAGTCTAAAACAAAGCCTGAA 59.114 36.000 0.00 0.00 0.00 3.02
255 256 5.437060 AGTGAAGTCTAAAACAAAGCCTGA 58.563 37.500 0.00 0.00 0.00 3.86
256 257 5.559035 CGAGTGAAGTCTAAAACAAAGCCTG 60.559 44.000 0.00 0.00 0.00 4.85
257 258 4.511826 CGAGTGAAGTCTAAAACAAAGCCT 59.488 41.667 0.00 0.00 0.00 4.58
258 259 4.773510 CGAGTGAAGTCTAAAACAAAGCC 58.226 43.478 0.00 0.00 0.00 4.35
259 260 4.212150 GCGAGTGAAGTCTAAAACAAAGC 58.788 43.478 0.00 0.00 0.00 3.51
260 261 4.208460 TCGCGAGTGAAGTCTAAAACAAAG 59.792 41.667 3.71 0.00 0.00 2.77
261 262 4.026310 GTCGCGAGTGAAGTCTAAAACAAA 60.026 41.667 10.24 0.00 0.00 2.83
262 263 3.488310 GTCGCGAGTGAAGTCTAAAACAA 59.512 43.478 10.24 0.00 0.00 2.83
263 264 3.047796 GTCGCGAGTGAAGTCTAAAACA 58.952 45.455 10.24 0.00 0.00 2.83
264 265 2.088664 CGTCGCGAGTGAAGTCTAAAAC 59.911 50.000 10.24 0.00 0.00 2.43
265 266 2.031769 TCGTCGCGAGTGAAGTCTAAAA 60.032 45.455 10.24 0.00 0.00 1.52
266 267 1.532437 TCGTCGCGAGTGAAGTCTAAA 59.468 47.619 10.24 0.00 0.00 1.85
267 268 1.150827 TCGTCGCGAGTGAAGTCTAA 58.849 50.000 10.24 0.00 0.00 2.10
268 269 2.831597 TCGTCGCGAGTGAAGTCTA 58.168 52.632 10.24 0.00 0.00 2.59
269 270 3.651645 TCGTCGCGAGTGAAGTCT 58.348 55.556 10.24 0.00 0.00 3.24
278 279 2.278792 CATGCCATCTCGTCGCGA 60.279 61.111 3.71 3.71 0.00 5.87
279 280 3.993234 GCATGCCATCTCGTCGCG 61.993 66.667 6.36 0.00 0.00 5.87
280 281 2.879070 CTGCATGCCATCTCGTCGC 61.879 63.158 16.68 0.00 0.00 5.19
281 282 0.807275 TTCTGCATGCCATCTCGTCG 60.807 55.000 16.68 0.00 0.00 5.12
282 283 1.372582 TTTCTGCATGCCATCTCGTC 58.627 50.000 16.68 0.00 0.00 4.20
283 284 1.674441 CATTTCTGCATGCCATCTCGT 59.326 47.619 16.68 0.00 0.00 4.18
284 285 2.401017 CATTTCTGCATGCCATCTCG 57.599 50.000 16.68 0.00 0.00 4.04
295 296 1.225854 GACGCACTCGCATTTCTGC 60.226 57.895 0.00 0.00 45.31 4.26
296 297 1.291184 TGGACGCACTCGCATTTCTG 61.291 55.000 0.00 0.00 39.84 3.02
297 298 0.602638 TTGGACGCACTCGCATTTCT 60.603 50.000 0.00 0.00 39.84 2.52
298 299 0.179215 CTTGGACGCACTCGCATTTC 60.179 55.000 0.00 0.00 39.84 2.17
299 300 1.868997 CTTGGACGCACTCGCATTT 59.131 52.632 0.00 0.00 39.84 2.32
300 301 2.680913 GCTTGGACGCACTCGCATT 61.681 57.895 0.00 0.00 39.84 3.56
301 302 3.121030 GCTTGGACGCACTCGCAT 61.121 61.111 0.00 0.00 39.84 4.73
302 303 4.299547 AGCTTGGACGCACTCGCA 62.300 61.111 0.00 0.00 39.84 5.10
303 304 3.482783 GAGCTTGGACGCACTCGC 61.483 66.667 0.00 0.00 39.84 5.03
304 305 2.811317 GGAGCTTGGACGCACTCG 60.811 66.667 0.00 0.00 42.43 4.18
305 306 1.739562 CTGGAGCTTGGACGCACTC 60.740 63.158 0.00 0.00 0.00 3.51
306 307 2.164865 CTCTGGAGCTTGGACGCACT 62.165 60.000 0.00 0.00 0.00 4.40
307 308 1.739562 CTCTGGAGCTTGGACGCAC 60.740 63.158 0.00 0.00 0.00 5.34
308 309 2.659016 CTCTGGAGCTTGGACGCA 59.341 61.111 0.00 0.00 0.00 5.24
309 310 2.125350 CCTCTGGAGCTTGGACGC 60.125 66.667 0.00 0.00 0.00 5.19
310 311 2.125350 GCCTCTGGAGCTTGGACG 60.125 66.667 0.00 0.00 0.00 4.79
311 312 2.125350 CGCCTCTGGAGCTTGGAC 60.125 66.667 0.00 0.00 0.00 4.02
312 313 2.283894 TCGCCTCTGGAGCTTGGA 60.284 61.111 0.00 0.00 0.00 3.53
313 314 2.125350 GTCGCCTCTGGAGCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
314 315 1.739562 GTGTCGCCTCTGGAGCTTG 60.740 63.158 0.00 0.00 0.00 4.01
315 316 2.659610 GTGTCGCCTCTGGAGCTT 59.340 61.111 0.00 0.00 0.00 3.74
316 317 3.753434 CGTGTCGCCTCTGGAGCT 61.753 66.667 0.00 0.00 0.00 4.09
317 318 3.749064 TCGTGTCGCCTCTGGAGC 61.749 66.667 0.00 0.00 0.00 4.70
318 319 2.179517 GTCGTGTCGCCTCTGGAG 59.820 66.667 0.00 0.00 0.00 3.86
319 320 2.596338 TGTCGTGTCGCCTCTGGA 60.596 61.111 0.00 0.00 0.00 3.86
320 321 2.126307 CTGTCGTGTCGCCTCTGG 60.126 66.667 0.00 0.00 0.00 3.86
321 322 2.126307 CCTGTCGTGTCGCCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
322 323 3.374402 CCCTGTCGTGTCGCCTCT 61.374 66.667 0.00 0.00 0.00 3.69
323 324 4.436998 CCCCTGTCGTGTCGCCTC 62.437 72.222 0.00 0.00 0.00 4.70
338 339 4.025401 CTGTTTGCACCGACGCCC 62.025 66.667 0.00 0.00 0.00 6.13
339 340 2.954753 CTCTGTTTGCACCGACGCC 61.955 63.158 0.00 0.00 0.00 5.68
340 341 1.891060 CTCTCTGTTTGCACCGACGC 61.891 60.000 0.00 0.00 0.00 5.19
341 342 0.318699 TCTCTCTGTTTGCACCGACG 60.319 55.000 0.00 0.00 0.00 5.12
342 343 1.140816 GTCTCTCTGTTTGCACCGAC 58.859 55.000 0.00 0.00 0.00 4.79
343 344 0.318699 CGTCTCTCTGTTTGCACCGA 60.319 55.000 0.00 0.00 0.00 4.69
344 345 1.284982 CCGTCTCTCTGTTTGCACCG 61.285 60.000 0.00 0.00 0.00 4.94
345 346 0.033504 TCCGTCTCTCTGTTTGCACC 59.966 55.000 0.00 0.00 0.00 5.01
346 347 1.140816 GTCCGTCTCTCTGTTTGCAC 58.859 55.000 0.00 0.00 0.00 4.57
347 348 1.040646 AGTCCGTCTCTCTGTTTGCA 58.959 50.000 0.00 0.00 0.00 4.08
348 349 1.000163 TCAGTCCGTCTCTCTGTTTGC 60.000 52.381 0.00 0.00 0.00 3.68
349 350 3.192422 AGATCAGTCCGTCTCTCTGTTTG 59.808 47.826 0.00 0.00 0.00 2.93
350 351 3.192422 CAGATCAGTCCGTCTCTCTGTTT 59.808 47.826 0.00 0.00 32.60 2.83
351 352 2.752354 CAGATCAGTCCGTCTCTCTGTT 59.248 50.000 0.00 0.00 32.60 3.16
352 353 2.364632 CAGATCAGTCCGTCTCTCTGT 58.635 52.381 0.00 0.00 32.60 3.41
353 354 1.675483 CCAGATCAGTCCGTCTCTCTG 59.325 57.143 0.00 0.00 34.93 3.35
354 355 1.409521 CCCAGATCAGTCCGTCTCTCT 60.410 57.143 0.00 0.00 0.00 3.10
355 356 1.028905 CCCAGATCAGTCCGTCTCTC 58.971 60.000 0.00 0.00 0.00 3.20
356 357 0.396417 CCCCAGATCAGTCCGTCTCT 60.396 60.000 0.00 0.00 0.00 3.10
357 358 1.395826 CCCCCAGATCAGTCCGTCTC 61.396 65.000 0.00 0.00 0.00 3.36
358 359 1.381872 CCCCCAGATCAGTCCGTCT 60.382 63.158 0.00 0.00 0.00 4.18
359 360 3.095347 GCCCCCAGATCAGTCCGTC 62.095 68.421 0.00 0.00 0.00 4.79
360 361 3.083997 GCCCCCAGATCAGTCCGT 61.084 66.667 0.00 0.00 0.00 4.69
361 362 2.669133 TTGCCCCCAGATCAGTCCG 61.669 63.158 0.00 0.00 0.00 4.79
362 363 1.077429 GTTGCCCCCAGATCAGTCC 60.077 63.158 0.00 0.00 0.00 3.85
363 364 0.393537 CAGTTGCCCCCAGATCAGTC 60.394 60.000 0.00 0.00 0.00 3.51
364 365 1.687612 CAGTTGCCCCCAGATCAGT 59.312 57.895 0.00 0.00 0.00 3.41
365 366 1.077212 CCAGTTGCCCCCAGATCAG 60.077 63.158 0.00 0.00 0.00 2.90
366 367 2.615465 CCCAGTTGCCCCCAGATCA 61.615 63.158 0.00 0.00 0.00 2.92
367 368 2.276740 CCCAGTTGCCCCCAGATC 59.723 66.667 0.00 0.00 0.00 2.75
368 369 4.066139 GCCCAGTTGCCCCCAGAT 62.066 66.667 0.00 0.00 0.00 2.90
384 385 4.599434 TTTTGACGTGCACGCGGC 62.599 61.111 37.35 26.22 44.43 6.53
385 386 1.369930 ATTTTTGACGTGCACGCGG 60.370 52.632 37.35 14.02 44.43 6.46
386 387 0.927994 ACATTTTTGACGTGCACGCG 60.928 50.000 37.35 17.45 44.43 6.01
387 388 0.498095 CACATTTTTGACGTGCACGC 59.502 50.000 37.35 28.46 44.43 5.34
392 393 1.486439 GGTGGCACATTTTTGACGTG 58.514 50.000 20.82 0.00 44.52 4.49
393 394 0.030101 CGGTGGCACATTTTTGACGT 59.970 50.000 20.82 0.00 44.52 4.34
394 395 0.030101 ACGGTGGCACATTTTTGACG 59.970 50.000 20.82 13.08 44.52 4.35
395 396 2.606065 GGTACGGTGGCACATTTTTGAC 60.606 50.000 20.82 6.72 44.52 3.18
396 397 1.609555 GGTACGGTGGCACATTTTTGA 59.390 47.619 20.82 0.00 44.52 2.69
397 398 1.338337 TGGTACGGTGGCACATTTTTG 59.662 47.619 20.82 3.98 44.52 2.44
398 399 1.693627 TGGTACGGTGGCACATTTTT 58.306 45.000 20.82 0.47 44.52 1.94
399 400 1.543802 CATGGTACGGTGGCACATTTT 59.456 47.619 20.82 2.35 44.52 1.82
400 401 1.173043 CATGGTACGGTGGCACATTT 58.827 50.000 20.82 5.02 44.52 2.32
401 402 0.037590 ACATGGTACGGTGGCACATT 59.962 50.000 20.82 7.73 44.52 2.71
402 403 0.676466 CACATGGTACGGTGGCACAT 60.676 55.000 20.82 9.46 44.52 3.21
403 404 1.302112 CACATGGTACGGTGGCACA 60.302 57.895 20.82 0.00 33.52 4.57
404 405 0.037139 TACACATGGTACGGTGGCAC 60.037 55.000 9.70 9.70 39.93 5.01
405 406 0.248012 CTACACATGGTACGGTGGCA 59.752 55.000 13.33 0.00 39.93 4.92
406 407 0.461339 CCTACACATGGTACGGTGGC 60.461 60.000 13.33 0.00 39.93 5.01
407 408 0.461339 GCCTACACATGGTACGGTGG 60.461 60.000 13.33 0.00 39.93 4.61
408 409 0.461339 GGCCTACACATGGTACGGTG 60.461 60.000 0.00 8.78 41.12 4.94
409 410 1.902556 GGCCTACACATGGTACGGT 59.097 57.895 0.00 0.00 0.00 4.83
410 411 1.227147 CGGCCTACACATGGTACGG 60.227 63.158 0.00 2.44 0.00 4.02
411 412 0.526954 GTCGGCCTACACATGGTACG 60.527 60.000 1.78 0.00 0.00 3.67
412 413 0.179092 GGTCGGCCTACACATGGTAC 60.179 60.000 9.95 0.00 0.00 3.34
413 414 0.615261 TGGTCGGCCTACACATGGTA 60.615 55.000 7.97 0.00 35.27 3.25
414 415 1.899437 CTGGTCGGCCTACACATGGT 61.899 60.000 7.97 0.00 35.27 3.55
415 416 1.153369 CTGGTCGGCCTACACATGG 60.153 63.158 7.97 0.00 35.27 3.66
416 417 0.036388 AACTGGTCGGCCTACACATG 60.036 55.000 7.97 0.00 35.27 3.21
417 418 1.206371 GTAACTGGTCGGCCTACACAT 59.794 52.381 7.97 0.00 35.27 3.21
418 419 0.604578 GTAACTGGTCGGCCTACACA 59.395 55.000 7.97 4.28 35.27 3.72
419 420 0.457337 CGTAACTGGTCGGCCTACAC 60.457 60.000 7.97 0.00 35.27 2.90
420 421 1.597797 CCGTAACTGGTCGGCCTACA 61.598 60.000 7.97 0.08 40.28 2.74
421 422 1.140375 CCGTAACTGGTCGGCCTAC 59.860 63.158 7.97 0.00 40.28 3.18
422 423 3.607163 CCGTAACTGGTCGGCCTA 58.393 61.111 7.97 0.00 40.28 3.93
427 428 2.125673 CCTGGCCGTAACTGGTCG 60.126 66.667 0.00 0.00 35.99 4.79
428 429 2.436115 GCCTGGCCGTAACTGGTC 60.436 66.667 7.66 0.00 0.00 4.02
429 430 4.029809 GGCCTGGCCGTAACTGGT 62.030 66.667 24.16 0.00 39.62 4.00
439 440 1.527844 CTCATTAGCTGGGCCTGGC 60.528 63.158 11.05 11.05 0.00 4.85
440 441 0.179034 GTCTCATTAGCTGGGCCTGG 60.179 60.000 12.70 2.60 0.00 4.45
441 442 0.543277 TGTCTCATTAGCTGGGCCTG 59.457 55.000 4.53 5.32 0.00 4.85
442 443 1.211457 CTTGTCTCATTAGCTGGGCCT 59.789 52.381 4.53 0.00 0.00 5.19
443 444 1.673168 CTTGTCTCATTAGCTGGGCC 58.327 55.000 0.00 0.00 0.00 5.80
444 445 1.065126 ACCTTGTCTCATTAGCTGGGC 60.065 52.381 0.00 0.00 0.00 5.36
445 446 4.141620 ACATACCTTGTCTCATTAGCTGGG 60.142 45.833 0.00 0.00 30.89 4.45
446 447 4.813161 CACATACCTTGTCTCATTAGCTGG 59.187 45.833 0.00 0.00 36.00 4.85
447 448 4.813161 CCACATACCTTGTCTCATTAGCTG 59.187 45.833 0.00 0.00 36.00 4.24
448 449 4.684485 GCCACATACCTTGTCTCATTAGCT 60.684 45.833 0.00 0.00 36.00 3.32
449 450 3.561725 GCCACATACCTTGTCTCATTAGC 59.438 47.826 0.00 0.00 36.00 3.09
450 451 4.769688 TGCCACATACCTTGTCTCATTAG 58.230 43.478 0.00 0.00 36.00 1.73
451 452 4.835284 TGCCACATACCTTGTCTCATTA 57.165 40.909 0.00 0.00 36.00 1.90
452 453 3.719268 TGCCACATACCTTGTCTCATT 57.281 42.857 0.00 0.00 36.00 2.57
453 454 3.719268 TTGCCACATACCTTGTCTCAT 57.281 42.857 0.00 0.00 36.00 2.90
454 455 3.719268 ATTGCCACATACCTTGTCTCA 57.281 42.857 0.00 0.00 36.00 3.27
455 456 3.129287 CCAATTGCCACATACCTTGTCTC 59.871 47.826 0.00 0.00 36.00 3.36
456 457 3.091545 CCAATTGCCACATACCTTGTCT 58.908 45.455 0.00 0.00 36.00 3.41
457 458 2.417243 GCCAATTGCCACATACCTTGTC 60.417 50.000 0.00 0.00 36.00 3.18
458 459 1.550072 GCCAATTGCCACATACCTTGT 59.450 47.619 0.00 0.00 39.91 3.16
459 460 1.549620 TGCCAATTGCCACATACCTTG 59.450 47.619 0.00 0.00 40.16 3.61
460 461 1.935799 TGCCAATTGCCACATACCTT 58.064 45.000 0.00 0.00 40.16 3.50
461 462 1.826720 CTTGCCAATTGCCACATACCT 59.173 47.619 0.00 0.00 40.16 3.08
462 463 1.824230 TCTTGCCAATTGCCACATACC 59.176 47.619 0.00 0.00 40.16 2.73
463 464 2.159198 CCTCTTGCCAATTGCCACATAC 60.159 50.000 0.00 0.00 40.16 2.39
464 465 2.101783 CCTCTTGCCAATTGCCACATA 58.898 47.619 0.00 0.00 40.16 2.29
465 466 0.899720 CCTCTTGCCAATTGCCACAT 59.100 50.000 0.00 0.00 40.16 3.21
466 467 0.469705 ACCTCTTGCCAATTGCCACA 60.470 50.000 0.00 0.00 40.16 4.17
467 468 0.244721 GACCTCTTGCCAATTGCCAC 59.755 55.000 0.00 0.00 40.16 5.01
468 469 0.178967 TGACCTCTTGCCAATTGCCA 60.179 50.000 0.00 0.00 40.16 4.92
469 470 0.968405 TTGACCTCTTGCCAATTGCC 59.032 50.000 0.00 0.00 40.16 4.52
470 471 1.888512 TCTTGACCTCTTGCCAATTGC 59.111 47.619 0.00 0.00 41.77 3.56
471 472 2.094854 GCTCTTGACCTCTTGCCAATTG 60.095 50.000 0.00 0.00 0.00 2.32
472 473 2.165998 GCTCTTGACCTCTTGCCAATT 58.834 47.619 0.00 0.00 0.00 2.32
473 474 1.615384 GGCTCTTGACCTCTTGCCAAT 60.615 52.381 0.00 0.00 40.04 3.16
474 475 0.250901 GGCTCTTGACCTCTTGCCAA 60.251 55.000 0.00 0.00 40.04 4.52
475 476 1.376466 GGCTCTTGACCTCTTGCCA 59.624 57.895 0.00 0.00 40.04 4.92
476 477 1.377856 GGGCTCTTGACCTCTTGCC 60.378 63.158 0.00 0.00 38.69 4.52
477 478 0.250901 TTGGGCTCTTGACCTCTTGC 60.251 55.000 0.00 0.00 43.49 4.01
478 479 1.349026 TCTTGGGCTCTTGACCTCTTG 59.651 52.381 0.00 0.00 43.49 3.02
479 480 1.627834 CTCTTGGGCTCTTGACCTCTT 59.372 52.381 0.00 0.00 43.49 2.85
480 481 1.274712 CTCTTGGGCTCTTGACCTCT 58.725 55.000 0.00 0.00 43.49 3.69
481 482 0.980423 ACTCTTGGGCTCTTGACCTC 59.020 55.000 0.00 0.00 43.49 3.85
482 483 0.689623 CACTCTTGGGCTCTTGACCT 59.310 55.000 0.00 0.00 43.49 3.85
483 484 0.322008 CCACTCTTGGGCTCTTGACC 60.322 60.000 0.00 0.00 43.36 4.02
484 485 3.239861 CCACTCTTGGGCTCTTGAC 57.760 57.895 0.00 0.00 39.57 3.18
492 493 0.674895 GTAGCAGTGCCACTCTTGGG 60.675 60.000 12.58 0.00 44.15 4.12
494 495 1.270518 ACAGTAGCAGTGCCACTCTTG 60.271 52.381 13.61 6.55 0.00 3.02
495 496 1.001406 GACAGTAGCAGTGCCACTCTT 59.999 52.381 13.61 3.66 0.00 2.85
496 497 0.605589 GACAGTAGCAGTGCCACTCT 59.394 55.000 13.61 1.70 0.00 3.24
497 498 0.318441 TGACAGTAGCAGTGCCACTC 59.682 55.000 13.61 4.70 0.00 3.51
498 499 0.979665 ATGACAGTAGCAGTGCCACT 59.020 50.000 10.64 10.64 0.00 4.00
499 500 1.466167 CAATGACAGTAGCAGTGCCAC 59.534 52.381 12.58 8.86 0.00 5.01
500 501 1.611410 CCAATGACAGTAGCAGTGCCA 60.611 52.381 12.58 1.16 30.62 4.92
501 502 1.089920 CCAATGACAGTAGCAGTGCC 58.910 55.000 12.58 0.00 30.62 5.01
502 503 2.099141 TCCAATGACAGTAGCAGTGC 57.901 50.000 7.13 7.13 30.62 4.40
503 504 3.005554 CCTTCCAATGACAGTAGCAGTG 58.994 50.000 0.00 0.00 0.00 3.66
504 505 2.906389 TCCTTCCAATGACAGTAGCAGT 59.094 45.455 0.00 0.00 0.00 4.40
505 506 3.616956 TCCTTCCAATGACAGTAGCAG 57.383 47.619 0.00 0.00 0.00 4.24
506 507 4.574674 ATTCCTTCCAATGACAGTAGCA 57.425 40.909 0.00 0.00 0.00 3.49
507 508 4.943705 TCAATTCCTTCCAATGACAGTAGC 59.056 41.667 0.00 0.00 0.00 3.58
508 509 6.127897 GGTTCAATTCCTTCCAATGACAGTAG 60.128 42.308 0.00 0.00 0.00 2.57
509 510 5.710099 GGTTCAATTCCTTCCAATGACAGTA 59.290 40.000 0.00 0.00 0.00 2.74
510 511 4.524328 GGTTCAATTCCTTCCAATGACAGT 59.476 41.667 0.00 0.00 0.00 3.55
511 512 4.379813 CGGTTCAATTCCTTCCAATGACAG 60.380 45.833 0.00 0.00 0.00 3.51
512 513 3.505680 CGGTTCAATTCCTTCCAATGACA 59.494 43.478 0.00 0.00 0.00 3.58
513 514 3.756434 TCGGTTCAATTCCTTCCAATGAC 59.244 43.478 0.00 0.00 0.00 3.06
551 552 6.372937 GGGAGCATTTATAGCCTTGAAGATAC 59.627 42.308 0.00 0.00 0.00 2.24
552 553 6.476378 GGGAGCATTTATAGCCTTGAAGATA 58.524 40.000 0.00 0.00 0.00 1.98
553 554 5.320277 GGGAGCATTTATAGCCTTGAAGAT 58.680 41.667 0.00 0.00 0.00 2.40
639 640 0.663867 TTCGCAACGTTCGAATCGGA 60.664 50.000 22.62 0.00 40.49 4.55
682 692 1.437772 TTGTTGTTGGCCCGTGTACG 61.438 55.000 0.00 0.00 39.44 3.67
684 694 0.739561 GTTTGTTGTTGGCCCGTGTA 59.260 50.000 0.00 0.00 0.00 2.90
803 821 0.250727 CCGTGGCTTCAAGAAAGGGA 60.251 55.000 0.00 0.00 35.37 4.20
842 860 1.527736 GTGGTGCGTCGTTGTAATTGA 59.472 47.619 0.00 0.00 0.00 2.57
943 970 3.384555 TAGGCTGACGGGTAGGGGG 62.385 68.421 0.00 0.00 0.00 5.40
944 971 1.833049 CTAGGCTGACGGGTAGGGG 60.833 68.421 0.00 0.00 0.00 4.79
945 972 1.833049 CCTAGGCTGACGGGTAGGG 60.833 68.421 0.00 0.00 0.00 3.53
952 979 1.002087 ACTCAAAACCCTAGGCTGACG 59.998 52.381 2.05 0.00 0.00 4.35
954 981 1.628846 GGACTCAAAACCCTAGGCTGA 59.371 52.381 2.05 2.24 0.00 4.26
1044 1072 0.824759 AGGAGAACGGGGAAATCTCG 59.175 55.000 0.00 0.00 40.37 4.04
1048 1076 1.340114 GCTGAAGGAGAACGGGGAAAT 60.340 52.381 0.00 0.00 0.00 2.17
1049 1077 0.036306 GCTGAAGGAGAACGGGGAAA 59.964 55.000 0.00 0.00 0.00 3.13
1050 1078 1.125093 TGCTGAAGGAGAACGGGGAA 61.125 55.000 0.00 0.00 0.00 3.97
1051 1079 0.909610 ATGCTGAAGGAGAACGGGGA 60.910 55.000 0.00 0.00 0.00 4.81
1371 1399 2.920912 TCCTCCTTGACGGCGGTT 60.921 61.111 13.24 0.00 38.85 4.44
1372 1400 3.382832 CTCCTCCTTGACGGCGGT 61.383 66.667 13.24 0.00 38.85 5.68
1411 1439 0.599558 TCGAAACGAATGTCCTCGGT 59.400 50.000 0.00 0.00 41.52 4.69
1412 1440 1.922570 ATCGAAACGAATGTCCTCGG 58.077 50.000 0.00 0.00 43.22 4.63
1763 1821 7.124298 TCAGAACATACTACTGCCATTAGAACT 59.876 37.037 0.00 0.00 0.00 3.01
1790 1848 6.579666 TTCAAATATAAGCATGATCAGGGC 57.420 37.500 9.76 11.51 0.00 5.19
1827 1885 5.882000 TCATCATTAATCAAGTGTGTCCCTG 59.118 40.000 0.00 0.00 0.00 4.45
1875 1933 8.796475 ACAGAGCATACTAAAAATGAAACACAT 58.204 29.630 0.00 0.00 41.45 3.21
1959 2023 6.478344 AGTTCATAGATGCTTGAGATTTCGAC 59.522 38.462 0.00 0.00 0.00 4.20
2022 2086 4.380843 TTGAATGAAACAGAAGGGCCTA 57.619 40.909 6.41 0.00 0.00 3.93
2107 2175 7.625817 GCACTGCATATTCAGCAATTAGATAGG 60.626 40.741 1.95 0.00 42.17 2.57
2132 2200 0.363178 GCACAATGTTTCGATTGCGC 59.637 50.000 0.00 0.00 36.89 6.09
2140 2209 1.541588 GACTGGGAGGCACAATGTTTC 59.458 52.381 0.00 0.00 0.00 2.78
2183 2252 2.478134 GCAGTGACTGAGACACAATGTC 59.522 50.000 18.18 0.51 38.56 3.06
2205 2276 5.802465 ACCAACTAGTAAAACTCCTTAGGC 58.198 41.667 0.00 0.00 0.00 3.93
2207 2278 9.557061 AAAAGACCAACTAGTAAAACTCCTTAG 57.443 33.333 0.00 0.00 0.00 2.18
2208 2279 9.910267 AAAAAGACCAACTAGTAAAACTCCTTA 57.090 29.630 0.00 0.00 0.00 2.69
2243 2314 5.236655 TCAGAGTAGCAAATACTGACTCG 57.763 43.478 0.00 0.00 45.06 4.18
2265 2336 9.771534 GAAGACTCCTTGCTATAAGATAATTGT 57.228 33.333 0.00 0.00 31.62 2.71
2267 2338 8.643324 ACGAAGACTCCTTGCTATAAGATAATT 58.357 33.333 0.00 0.00 31.62 1.40
2276 2347 5.737635 GCAAGATACGAAGACTCCTTGCTAT 60.738 44.000 15.13 0.00 41.57 2.97
2292 2363 5.178438 GCCTTCACTAGCAATAGCAAGATAC 59.822 44.000 0.00 0.00 45.49 2.24
2301 2372 5.130311 TGATACTTGGCCTTCACTAGCAATA 59.870 40.000 3.32 0.00 0.00 1.90
2302 2373 2.887151 ACTTGGCCTTCACTAGCAAT 57.113 45.000 3.32 0.00 0.00 3.56
2324 2395 6.808008 TTACTGAAAGCAGAAAGGAGAATG 57.192 37.500 0.00 0.00 45.17 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.