Multiple sequence alignment - TraesCS4D01G252900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G252900 chr4D 100.000 3313 0 0 478 3790 421533477 421530165 0.000000e+00 6119
1 TraesCS4D01G252900 chr4D 100.000 90 0 0 1 90 421533954 421533865 2.340000e-37 167
2 TraesCS4D01G252900 chr4B 94.524 2319 82 20 1477 3790 518643490 518641212 0.000000e+00 3537
3 TraesCS4D01G252900 chr4B 91.111 630 50 5 513 1142 478184936 478184313 0.000000e+00 848
4 TraesCS4D01G252900 chr4B 93.031 574 36 2 489 1062 518644416 518643847 0.000000e+00 835
5 TraesCS4D01G252900 chr4B 90.808 359 11 5 1101 1438 518643847 518643490 9.590000e-126 460
6 TraesCS4D01G252900 chr4B 96.599 147 5 0 1369 1515 478184316 478184170 1.050000e-60 244
7 TraesCS4D01G252900 chr4B 94.444 90 5 0 1 90 518644798 518644709 5.100000e-29 139
8 TraesCS4D01G252900 chr4A 95.245 2019 68 18 1429 3435 42273470 42275472 0.000000e+00 3171
9 TraesCS4D01G252900 chr4A 94.260 993 47 7 478 1462 42272482 42273472 0.000000e+00 1509
10 TraesCS4D01G252900 chr4A 93.814 291 14 2 3501 3790 42275481 42275768 5.810000e-118 435
11 TraesCS4D01G252900 chr4A 95.181 83 4 0 1 83 42272356 42272438 8.540000e-27 132
12 TraesCS4D01G252900 chr2B 91.225 661 52 5 482 1142 31122683 31123337 0.000000e+00 894
13 TraesCS4D01G252900 chr2B 97.279 147 4 0 1369 1515 31123334 31123480 2.260000e-62 250
14 TraesCS4D01G252900 chr2A 90.063 634 52 7 482 1115 72566612 72565990 0.000000e+00 811
15 TraesCS4D01G252900 chr2A 94.000 150 5 1 1369 1514 72521229 72521080 1.370000e-54 224
16 TraesCS4D01G252900 chr2A 94.667 75 2 2 1 73 72604213 72604139 8.600000e-22 115
17 TraesCS4D01G252900 chr6A 86.512 215 27 2 2017 2229 612120992 612121206 6.330000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G252900 chr4D 421530165 421533954 3789 True 3143.00 6119 100.00000 1 3790 2 chr4D.!!$R1 3789
1 TraesCS4D01G252900 chr4B 518641212 518644798 3586 True 1242.75 3537 93.20175 1 3790 4 chr4B.!!$R2 3789
2 TraesCS4D01G252900 chr4B 478184170 478184936 766 True 546.00 848 93.85500 513 1515 2 chr4B.!!$R1 1002
3 TraesCS4D01G252900 chr4A 42272356 42275768 3412 False 1311.75 3171 94.62500 1 3790 4 chr4A.!!$F1 3789
4 TraesCS4D01G252900 chr2B 31122683 31123480 797 False 572.00 894 94.25200 482 1515 2 chr2B.!!$F1 1033
5 TraesCS4D01G252900 chr2A 72565990 72566612 622 True 811.00 811 90.06300 482 1115 1 chr2A.!!$R2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 519 1.392710 CGTCCCCTCGATTAGGTGCT 61.393 60.000 0.0 0.0 44.9 4.40 F
749 757 1.605165 AAAATTCCGCGCCCTTCCA 60.605 52.632 0.0 0.0 0.0 3.53 F
1740 1838 1.066858 CAGTACAGGCGAATGGTCAGT 60.067 52.381 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 1773 0.804989 GCCAATTGGAGACTGGAACG 59.195 55.000 29.02 0.00 37.39 3.95 R
1745 1843 1.197721 CTGCCCACAGCTAAAAAGTCG 59.802 52.381 0.00 0.00 44.23 4.18 R
3099 3204 0.892063 AAGCTCAAGACTCGAGGGAC 59.108 55.000 18.41 7.86 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
518 519 1.392710 CGTCCCCTCGATTAGGTGCT 61.393 60.000 0.00 0.00 44.90 4.40
606 607 3.074412 CGTGTTTAGGTCTGGATTTGCT 58.926 45.455 0.00 0.00 0.00 3.91
749 757 1.605165 AAAATTCCGCGCCCTTCCA 60.605 52.632 0.00 0.00 0.00 3.53
835 843 3.250744 TGCCGTCTCTAGATTTGAAACG 58.749 45.455 0.00 0.00 0.00 3.60
870 878 3.907474 TGATCCTGTTGACTTAGGGTTCA 59.093 43.478 0.00 0.00 34.76 3.18
1042 1050 3.838317 TGACCTTAAGAGTATGCACCTGT 59.162 43.478 3.36 0.00 0.00 4.00
1054 1062 2.929641 TGCACCTGTCACAATTCTTGA 58.070 42.857 0.00 0.00 0.00 3.02
1062 1070 4.900635 GTCACAATTCTTGACAACCTGT 57.099 40.909 10.59 0.00 42.58 4.00
1076 1084 6.560253 GACAACCTGTCTTGTATGTTTCAT 57.440 37.500 0.00 0.00 43.73 2.57
1077 1085 6.959639 ACAACCTGTCTTGTATGTTTCATT 57.040 33.333 0.00 0.00 32.38 2.57
1078 1086 7.346751 ACAACCTGTCTTGTATGTTTCATTT 57.653 32.000 0.00 0.00 32.38 2.32
1079 1087 8.458573 ACAACCTGTCTTGTATGTTTCATTTA 57.541 30.769 0.00 0.00 32.38 1.40
1080 1088 9.077885 ACAACCTGTCTTGTATGTTTCATTTAT 57.922 29.630 0.00 0.00 32.38 1.40
1081 1089 9.559958 CAACCTGTCTTGTATGTTTCATTTATC 57.440 33.333 0.00 0.00 0.00 1.75
1082 1090 9.520515 AACCTGTCTTGTATGTTTCATTTATCT 57.479 29.630 0.00 0.00 0.00 1.98
1083 1091 8.950210 ACCTGTCTTGTATGTTTCATTTATCTG 58.050 33.333 0.00 0.00 0.00 2.90
1084 1092 8.400947 CCTGTCTTGTATGTTTCATTTATCTGG 58.599 37.037 0.00 0.00 0.00 3.86
1085 1093 9.166173 CTGTCTTGTATGTTTCATTTATCTGGA 57.834 33.333 0.00 0.00 0.00 3.86
1086 1094 9.513906 TGTCTTGTATGTTTCATTTATCTGGAA 57.486 29.630 0.00 0.00 0.00 3.53
1087 1095 9.774742 GTCTTGTATGTTTCATTTATCTGGAAC 57.225 33.333 0.00 0.00 35.53 3.62
1088 1096 9.513906 TCTTGTATGTTTCATTTATCTGGAACA 57.486 29.630 0.73 0.73 46.06 3.18
1343 1389 2.159531 TCGAAACGTACCCTGTATGTCG 60.160 50.000 0.00 1.65 0.00 4.35
1544 1642 5.255397 AGGACAAAATCATACCAGTTGGA 57.745 39.130 4.92 0.00 38.94 3.53
1632 1730 7.852971 TGGTACTTGGATTATTTAGAAACCG 57.147 36.000 0.00 0.00 0.00 4.44
1675 1773 2.439156 GTGCCAGCTCCATGGTCC 60.439 66.667 12.58 3.88 42.75 4.46
1735 1833 2.093306 TGTTCAGTACAGGCGAATGG 57.907 50.000 0.00 0.00 31.68 3.16
1740 1838 1.066858 CAGTACAGGCGAATGGTCAGT 60.067 52.381 0.00 0.00 0.00 3.41
1745 1843 1.197721 CAGGCGAATGGTCAGTTGTTC 59.802 52.381 0.00 0.00 0.00 3.18
2105 2203 8.382030 TGAATTGACTAGTATGCATATGGTTG 57.618 34.615 10.16 2.15 0.00 3.77
2257 2355 7.537596 TTGGTTGTTCTCCATCAACATTTAT 57.462 32.000 9.60 0.00 43.64 1.40
2391 2489 7.333672 GGTTTTATCGTACTCTTCAGGTTTGAT 59.666 37.037 0.00 0.00 32.27 2.57
2471 2571 7.834181 ACCTGAAAAGGTTATACAATGCTATGT 59.166 33.333 0.00 0.78 39.57 2.29
2683 2783 4.217118 GGATTTCACAGCACAGACATTTCT 59.783 41.667 0.00 0.00 0.00 2.52
2722 2822 2.388735 ACGAGGCCTGATCTGTATTCA 58.611 47.619 12.00 0.00 0.00 2.57
2800 2900 2.166870 TGCCGGTGTAGTATCATTTCGT 59.833 45.455 1.90 0.00 0.00 3.85
2940 3043 0.038455 TACACCCCCGGATGGTTTTG 59.962 55.000 12.44 5.43 32.46 2.44
2995 3098 4.985538 TGGGCTGAAGAAACTTCATAAGT 58.014 39.130 13.34 0.00 45.46 2.24
3030 3133 7.014326 ACGATTCAAATATGTAGCTGTAGAGGA 59.986 37.037 0.00 0.00 0.00 3.71
3031 3134 7.867909 CGATTCAAATATGTAGCTGTAGAGGAA 59.132 37.037 0.00 0.00 0.00 3.36
3032 3135 9.717942 GATTCAAATATGTAGCTGTAGAGGAAT 57.282 33.333 0.00 0.00 0.00 3.01
3039 3142 3.399440 AGCTGTAGAGGAATATGCTGC 57.601 47.619 0.00 0.00 0.00 5.25
3058 3161 4.753233 CTGCTGAAGTAGAAGCTACATGT 58.247 43.478 2.69 2.69 40.21 3.21
3078 3183 8.290663 ACATGTTACGTCTCTTTTGTACTTAC 57.709 34.615 0.00 0.00 0.00 2.34
3099 3204 8.675504 ACTTACGTTCAGATATAGATATTCCGG 58.324 37.037 0.00 0.00 0.00 5.14
3102 3207 6.095160 ACGTTCAGATATAGATATTCCGGTCC 59.905 42.308 0.00 0.00 0.00 4.46
3197 3302 8.192774 TGCTGGAACTGAAATTAATTCATGATC 58.807 33.333 0.10 0.00 46.62 2.92
3224 3329 4.039852 ACAAACTGTGGAACTTTGTGGTTT 59.960 37.500 0.00 0.00 41.69 3.27
3231 3336 4.640647 GTGGAACTTTGTGGTTTTCTCTCT 59.359 41.667 0.00 0.00 0.00 3.10
3236 3341 5.606505 ACTTTGTGGTTTTCTCTCTCTCTC 58.393 41.667 0.00 0.00 0.00 3.20
3238 3343 5.461032 TTGTGGTTTTCTCTCTCTCTCTC 57.539 43.478 0.00 0.00 0.00 3.20
3248 3353 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3250 3355 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3252 3357 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3254 3359 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3255 3360 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
3433 3544 2.115052 ACCAGCAACCGATTGGCA 59.885 55.556 0.00 0.00 39.70 4.92
3434 3545 1.973281 ACCAGCAACCGATTGGCAG 60.973 57.895 0.00 0.00 39.70 4.85
3435 3546 1.675310 CCAGCAACCGATTGGCAGA 60.675 57.895 0.00 0.00 39.70 4.26
3436 3547 1.033746 CCAGCAACCGATTGGCAGAT 61.034 55.000 0.00 0.00 39.70 2.90
3437 3548 0.813184 CAGCAACCGATTGGCAGATT 59.187 50.000 0.00 0.00 39.70 2.40
3438 3549 0.813184 AGCAACCGATTGGCAGATTG 59.187 50.000 0.00 0.00 39.70 2.67
3439 3550 0.179129 GCAACCGATTGGCAGATTGG 60.179 55.000 0.00 11.93 39.70 3.16
3440 3551 0.179129 CAACCGATTGGCAGATTGGC 60.179 55.000 12.92 0.00 44.03 4.52
3462 3573 5.041191 CAGGTAAGGTATCTGCCAATCTT 57.959 43.478 0.42 0.00 28.88 2.40
3466 3577 1.202698 AGGTATCTGCCAATCTTCCGC 60.203 52.381 0.00 0.00 0.00 5.54
3470 3581 2.361104 TGCCAATCTTCCGCACCC 60.361 61.111 0.00 0.00 0.00 4.61
3487 3598 1.329256 CCCCTGATAGTCTGGTACGG 58.671 60.000 2.81 0.00 34.10 4.02
3513 3624 1.335689 ACACAAGAAGACGAGCGGTAC 60.336 52.381 0.00 0.00 0.00 3.34
3654 3765 2.196749 AGCATTGCTCTAACATCGTCG 58.803 47.619 5.03 0.00 30.62 5.12
3664 3775 5.220416 GCTCTAACATCGTCGCTAACAAAAT 60.220 40.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
518 519 2.687200 ACCCCGCAGCCACAGATA 60.687 61.111 0.00 0.00 0.00 1.98
538 539 0.317854 TGCCGAATCGTAGATCGCTG 60.318 55.000 0.82 0.00 45.12 5.18
539 540 0.317938 GTGCCGAATCGTAGATCGCT 60.318 55.000 0.82 0.00 45.12 4.93
568 569 2.741211 GAACAGCCCCCGAACGAC 60.741 66.667 0.00 0.00 0.00 4.34
569 570 4.367023 CGAACAGCCCCCGAACGA 62.367 66.667 0.00 0.00 0.00 3.85
570 571 4.675029 ACGAACAGCCCCCGAACG 62.675 66.667 0.00 0.00 0.00 3.95
571 572 3.047877 CACGAACAGCCCCCGAAC 61.048 66.667 0.00 0.00 0.00 3.95
572 573 2.612095 AAACACGAACAGCCCCCGAA 62.612 55.000 0.00 0.00 0.00 4.30
574 575 1.296056 CTAAACACGAACAGCCCCCG 61.296 60.000 0.00 0.00 0.00 5.73
606 607 5.004922 ACGAACTCTCAAAATTTTGCCAA 57.995 34.783 23.36 11.45 38.05 4.52
743 751 3.069586 TGCCTAACTCGATACATGGAAGG 59.930 47.826 0.00 0.00 0.00 3.46
749 757 5.180117 GCATGAATTGCCTAACTCGATACAT 59.820 40.000 0.00 0.00 46.15 2.29
835 843 0.244994 AGGATCAGCGATCGCCATAC 59.755 55.000 34.89 26.50 39.72 2.39
954 962 0.178068 ACACGAAGTCCTGCAACTGT 59.822 50.000 0.00 0.00 41.61 3.55
1054 1062 6.959639 AATGAAACATACAAGACAGGTTGT 57.040 33.333 0.00 0.00 43.22 3.32
1059 1067 9.166173 TCCAGATAAATGAAACATACAAGACAG 57.834 33.333 0.00 0.00 0.00 3.51
1061 1069 9.774742 GTTCCAGATAAATGAAACATACAAGAC 57.225 33.333 0.00 0.00 0.00 3.01
1062 1070 9.513906 TGTTCCAGATAAATGAAACATACAAGA 57.486 29.630 0.00 0.00 0.00 3.02
1076 1084 8.826710 CGCTGAGTTATTATTGTTCCAGATAAA 58.173 33.333 0.00 0.00 0.00 1.40
1077 1085 7.042051 GCGCTGAGTTATTATTGTTCCAGATAA 60.042 37.037 0.00 0.00 0.00 1.75
1078 1086 6.423905 GCGCTGAGTTATTATTGTTCCAGATA 59.576 38.462 0.00 0.00 0.00 1.98
1079 1087 5.237344 GCGCTGAGTTATTATTGTTCCAGAT 59.763 40.000 0.00 0.00 0.00 2.90
1080 1088 4.570772 GCGCTGAGTTATTATTGTTCCAGA 59.429 41.667 0.00 0.00 0.00 3.86
1081 1089 4.572389 AGCGCTGAGTTATTATTGTTCCAG 59.428 41.667 10.39 0.00 0.00 3.86
1082 1090 4.513442 AGCGCTGAGTTATTATTGTTCCA 58.487 39.130 10.39 0.00 0.00 3.53
1083 1091 5.177696 CCTAGCGCTGAGTTATTATTGTTCC 59.822 44.000 22.90 0.00 0.00 3.62
1084 1092 5.333416 GCCTAGCGCTGAGTTATTATTGTTC 60.333 44.000 22.90 0.00 0.00 3.18
1085 1093 4.511826 GCCTAGCGCTGAGTTATTATTGTT 59.488 41.667 22.90 0.00 0.00 2.83
1086 1094 4.058817 GCCTAGCGCTGAGTTATTATTGT 58.941 43.478 22.90 0.00 0.00 2.71
1087 1095 4.058124 TGCCTAGCGCTGAGTTATTATTG 58.942 43.478 22.90 0.00 38.78 1.90
1088 1096 4.058817 GTGCCTAGCGCTGAGTTATTATT 58.941 43.478 22.90 0.00 38.78 1.40
1089 1097 3.654414 GTGCCTAGCGCTGAGTTATTAT 58.346 45.455 22.90 0.00 38.78 1.28
1090 1098 3.093717 GTGCCTAGCGCTGAGTTATTA 57.906 47.619 22.90 0.00 38.78 0.98
1091 1099 1.941325 GTGCCTAGCGCTGAGTTATT 58.059 50.000 22.90 0.00 38.78 1.40
1092 1100 3.669354 GTGCCTAGCGCTGAGTTAT 57.331 52.632 22.90 0.00 38.78 1.89
1544 1642 3.445008 TCACTCTTCCTACAAGGCAGAT 58.555 45.455 0.00 0.00 37.04 2.90
1675 1773 0.804989 GCCAATTGGAGACTGGAACG 59.195 55.000 29.02 0.00 37.39 3.95
1735 1833 5.198274 CAGCTAAAAAGTCGAACAACTGAC 58.802 41.667 0.00 0.00 35.33 3.51
1740 1838 3.314080 CCCACAGCTAAAAAGTCGAACAA 59.686 43.478 0.00 0.00 0.00 2.83
1745 1843 1.197721 CTGCCCACAGCTAAAAAGTCG 59.802 52.381 0.00 0.00 44.23 4.18
2105 2203 8.553459 TCTGAAAGAATACATGAGAAAAGGTC 57.447 34.615 0.00 0.00 42.31 3.85
2408 2508 4.888326 AATGGCAGGTTTTAATCAAGCA 57.112 36.364 0.00 0.00 0.00 3.91
2471 2571 7.222417 CGCATTGGTTTTGCAGATAATTATCAA 59.778 33.333 24.00 10.30 40.14 2.57
2477 2577 4.454728 ACGCATTGGTTTTGCAGATAAT 57.545 36.364 0.00 0.00 40.14 1.28
2577 2677 1.294659 CTGCGAGAGTTGGCCAGAAC 61.295 60.000 5.11 1.52 0.00 3.01
2722 2822 5.584551 AACAAGGGAAATTAGACTGGTCT 57.415 39.130 8.36 8.36 43.40 3.85
2732 2832 4.164030 AGGAACTGCAAAACAAGGGAAATT 59.836 37.500 0.00 0.00 37.18 1.82
2800 2900 5.525012 CAGCTGCTACATAAGAAACATAGCA 59.475 40.000 0.00 4.36 44.46 3.49
2940 3043 5.291971 ACAATTTGCATCTTGGTCTTTGAC 58.708 37.500 11.97 0.00 0.00 3.18
2995 3098 5.421277 ACATATTTGAATCGTACGGGTTCA 58.579 37.500 23.64 23.64 0.00 3.18
3030 3133 5.033589 AGCTTCTACTTCAGCAGCATATT 57.966 39.130 0.00 0.00 45.02 1.28
3031 3134 4.686191 AGCTTCTACTTCAGCAGCATAT 57.314 40.909 0.00 0.00 45.02 1.78
3032 3135 4.402474 TGTAGCTTCTACTTCAGCAGCATA 59.598 41.667 0.00 0.00 45.02 3.14
3039 3142 6.323266 ACGTAACATGTAGCTTCTACTTCAG 58.677 40.000 0.00 0.00 0.00 3.02
3078 3183 6.459848 GGGACCGGAATATCTATATCTGAACG 60.460 46.154 9.46 0.00 0.00 3.95
3099 3204 0.892063 AAGCTCAAGACTCGAGGGAC 59.108 55.000 18.41 7.86 0.00 4.46
3102 3207 1.000283 ACACAAGCTCAAGACTCGAGG 60.000 52.381 18.41 0.00 0.00 4.63
3208 3313 4.640647 AGAGAGAAAACCACAAAGTTCCAC 59.359 41.667 0.00 0.00 0.00 4.02
3224 3329 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
3231 3336 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3236 3341 5.804944 AGATGAGAGAGAGAGAGAGAGAG 57.195 47.826 0.00 0.00 0.00 3.20
3238 3343 7.121759 ACAAAAAGATGAGAGAGAGAGAGAGAG 59.878 40.741 0.00 0.00 0.00 3.20
3248 3353 5.218139 GCCAAACACAAAAAGATGAGAGAG 58.782 41.667 0.00 0.00 0.00 3.20
3250 3355 3.976942 CGCCAAACACAAAAAGATGAGAG 59.023 43.478 0.00 0.00 0.00 3.20
3252 3357 2.472488 GCGCCAAACACAAAAAGATGAG 59.528 45.455 0.00 0.00 0.00 2.90
3254 3359 2.472816 AGCGCCAAACACAAAAAGATG 58.527 42.857 2.29 0.00 0.00 2.90
3255 3360 2.888834 AGCGCCAAACACAAAAAGAT 57.111 40.000 2.29 0.00 0.00 2.40
3433 3544 3.181450 GCAGATACCTTACCTGCCAATCT 60.181 47.826 0.00 0.00 45.38 2.40
3434 3545 3.142174 GCAGATACCTTACCTGCCAATC 58.858 50.000 0.00 0.00 45.38 2.67
3435 3546 3.214696 GCAGATACCTTACCTGCCAAT 57.785 47.619 0.00 0.00 45.38 3.16
3436 3547 2.710096 GCAGATACCTTACCTGCCAA 57.290 50.000 0.00 0.00 45.38 4.52
3440 3551 4.696479 AGATTGGCAGATACCTTACCTG 57.304 45.455 0.00 0.00 0.00 4.00
3455 3566 1.750399 CAGGGGTGCGGAAGATTGG 60.750 63.158 0.00 0.00 0.00 3.16
3462 3573 1.043116 CAGACTATCAGGGGTGCGGA 61.043 60.000 0.00 0.00 0.00 5.54
3466 3577 1.681793 CGTACCAGACTATCAGGGGTG 59.318 57.143 0.00 0.00 33.14 4.61
3470 3581 2.033049 CGTTCCGTACCAGACTATCAGG 59.967 54.545 0.00 0.00 0.00 3.86
3487 3598 2.097347 GCTCGTCTTCTTGTGTTCGTTC 60.097 50.000 0.00 0.00 0.00 3.95
3722 3834 2.304761 GGTGTTGGTACCTGGAGAATCA 59.695 50.000 14.36 0.00 37.74 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.