Multiple sequence alignment - TraesCS4D01G252600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G252600 chr4D 100.000 2357 0 0 1 2357 421330831 421333187 0.000000e+00 4353.0
1 TraesCS4D01G252600 chr4D 93.103 174 10 2 236 408 334164559 334164387 1.080000e-63 254.0
2 TraesCS4D01G252600 chr4D 95.455 88 3 1 656 742 401787937 401788024 3.160000e-29 139.0
3 TraesCS4D01G252600 chr4D 95.349 86 3 1 656 740 76602415 76602500 4.090000e-28 135.0
4 TraesCS4D01G252600 chr4D 94.318 88 3 2 656 742 354826022 354825936 1.470000e-27 134.0
5 TraesCS4D01G252600 chr4D 93.407 91 5 1 656 745 501974422 501974332 1.470000e-27 134.0
6 TraesCS4D01G252600 chr4B 97.433 818 20 1 1541 2357 518148305 518149122 0.000000e+00 1393.0
7 TraesCS4D01G252600 chr4B 91.217 797 40 13 738 1516 518147399 518148183 0.000000e+00 1057.0
8 TraesCS4D01G252600 chr4B 82.158 241 38 5 4 240 483526479 483526240 3.970000e-48 202.0
9 TraesCS4D01G252600 chr4A 98.182 770 11 3 1589 2357 42784730 42783963 0.000000e+00 1341.0
10 TraesCS4D01G252600 chr4A 91.975 810 44 5 741 1544 42785900 42785106 0.000000e+00 1116.0
11 TraesCS4D01G252600 chr4A 89.575 259 21 4 488 742 544049328 544049072 8.120000e-85 324.0
12 TraesCS4D01G252600 chr4A 83.122 237 37 3 3 236 428264223 428264459 1.830000e-51 213.0
13 TraesCS4D01G252600 chr4A 93.548 93 5 1 656 747 317070330 317070238 1.140000e-28 137.0
14 TraesCS4D01G252600 chr4A 88.182 110 10 3 656 763 577726956 577727064 6.840000e-26 128.0
15 TraesCS4D01G252600 chr4A 98.113 53 0 1 1541 1593 42784860 42784809 8.970000e-15 91.6
16 TraesCS4D01G252600 chr2A 86.241 407 42 7 1578 1983 666559179 666558786 1.670000e-116 429.0
17 TraesCS4D01G252600 chr3B 80.693 404 62 11 4 403 703118932 703118541 1.370000e-77 300.0
18 TraesCS4D01G252600 chr3B 82.158 241 39 3 4 240 42358987 42358747 1.100000e-48 204.0
19 TraesCS4D01G252600 chr3A 89.113 248 18 4 496 742 743855173 743855412 1.370000e-77 300.0
20 TraesCS4D01G252600 chr3A 88.406 207 18 4 198 403 63733815 63734016 6.510000e-61 244.0
21 TraesCS4D01G252600 chr6D 96.429 168 5 1 488 655 345048448 345048614 2.310000e-70 276.0
22 TraesCS4D01G252600 chr6D 95.402 87 3 1 656 742 444880562 444880647 1.140000e-28 137.0
23 TraesCS4D01G252600 chr6D 93.333 90 4 2 658 745 363594092 363594003 5.290000e-27 132.0
24 TraesCS4D01G252600 chr5D 96.429 168 5 1 488 655 415748982 415748816 2.310000e-70 276.0
25 TraesCS4D01G252600 chr5D 96.429 168 5 1 488 655 510162070 510161904 2.310000e-70 276.0
26 TraesCS4D01G252600 chr5D 88.406 207 18 4 198 403 92919307 92919508 6.510000e-61 244.0
27 TraesCS4D01G252600 chr3D 96.429 168 5 1 488 655 12368791 12368957 2.310000e-70 276.0
28 TraesCS4D01G252600 chr3D 83.459 133 13 8 614 741 26511540 26511412 5.320000e-22 115.0
29 TraesCS4D01G252600 chr1A 94.886 176 7 2 480 655 49126660 49126833 8.300000e-70 274.0
30 TraesCS4D01G252600 chr1A 95.455 88 3 1 656 742 559571829 559571742 3.160000e-29 139.0
31 TraesCS4D01G252600 chr1A 91.837 98 5 2 656 750 557499351 557499254 1.470000e-27 134.0
32 TraesCS4D01G252600 chr2B 84.980 253 38 0 1775 2027 614906422 614906170 8.360000e-65 257.0
33 TraesCS4D01G252600 chr2B 83.966 237 37 1 5 240 86541377 86541141 2.360000e-55 226.0
34 TraesCS4D01G252600 chr1D 85.115 262 27 9 488 741 355295819 355296076 8.360000e-65 257.0
35 TraesCS4D01G252600 chr1D 94.318 88 4 1 656 742 467930103 467930190 1.470000e-27 134.0
36 TraesCS4D01G252600 chr5A 88.889 207 17 4 198 403 422444504 422444303 1.400000e-62 250.0
37 TraesCS4D01G252600 chr5A 84.615 260 29 10 490 742 480141909 480141654 5.030000e-62 248.0
38 TraesCS4D01G252600 chr5A 87.923 207 19 4 198 403 120310301 120310502 3.030000e-59 239.0
39 TraesCS4D01G252600 chr5A 87.440 207 20 4 198 403 181621158 181621359 1.410000e-57 233.0
40 TraesCS4D01G252600 chr5A 87.440 207 20 4 198 403 204475040 204474839 1.410000e-57 233.0
41 TraesCS4D01G252600 chr2D 88.889 207 17 4 198 403 476515348 476515147 1.400000e-62 250.0
42 TraesCS4D01G252600 chr2D 95.652 92 3 1 656 746 644996979 644996888 1.890000e-31 147.0
43 TraesCS4D01G252600 chr2D 94.505 91 4 1 656 745 516860729 516860639 3.160000e-29 139.0
44 TraesCS4D01G252600 chr5B 83.774 265 33 7 488 747 658155174 658154915 2.340000e-60 243.0
45 TraesCS4D01G252600 chr5B 82.158 241 38 4 4 240 28405165 28404926 3.970000e-48 202.0
46 TraesCS4D01G252600 chr7A 85.169 236 31 4 4 236 484450965 484450731 3.030000e-59 239.0
47 TraesCS4D01G252600 chr7A 82.700 237 36 5 4 236 303797539 303797774 3.070000e-49 206.0
48 TraesCS4D01G252600 chr1B 82.353 238 38 4 4 240 660398433 660398199 1.100000e-48 204.0
49 TraesCS4D01G252600 chr1B 95.455 88 3 1 656 742 12756933 12756846 3.160000e-29 139.0
50 TraesCS4D01G252600 chr6A 80.505 277 30 15 488 742 572150038 572149764 8.600000e-45 191.0
51 TraesCS4D01G252600 chrUn 93.182 88 5 1 656 742 51476585 51476498 6.840000e-26 128.0
52 TraesCS4D01G252600 chrUn 93.182 88 5 1 656 742 71293426 71293339 6.840000e-26 128.0
53 TraesCS4D01G252600 chrUn 93.182 88 5 1 656 742 322554005 322553918 6.840000e-26 128.0
54 TraesCS4D01G252600 chrUn 92.222 90 5 2 656 744 17264555 17264467 2.460000e-25 126.0
55 TraesCS4D01G252600 chrUn 93.103 87 5 1 656 741 379959285 379959199 2.460000e-25 126.0
56 TraesCS4D01G252600 chrUn 91.304 92 7 1 656 746 87745523 87745432 8.840000e-25 124.0
57 TraesCS4D01G252600 chr7B 83.916 143 14 8 604 741 165457683 165457821 6.840000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G252600 chr4D 421330831 421333187 2356 False 4353.000000 4353 100.000 1 2357 1 chr4D.!!$F3 2356
1 TraesCS4D01G252600 chr4B 518147399 518149122 1723 False 1225.000000 1393 94.325 738 2357 2 chr4B.!!$F1 1619
2 TraesCS4D01G252600 chr4A 42783963 42785900 1937 True 849.533333 1341 96.090 741 2357 3 chr4A.!!$R3 1616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 676 0.037975 GGGTAGGGTGTACGTGTGTG 60.038 60.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2274 0.469331 CAGGCCAGGCAATGATGGAT 60.469 55.0 15.19 0.0 39.02 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.236443 ACCGTAATGGGGGTGTCA 57.764 55.556 0.00 0.00 44.64 3.58
18 19 2.704719 ACCGTAATGGGGGTGTCAT 58.295 52.632 0.00 0.00 44.64 3.06
19 20 1.882308 ACCGTAATGGGGGTGTCATA 58.118 50.000 0.00 0.00 44.64 2.15
20 21 1.766496 ACCGTAATGGGGGTGTCATAG 59.234 52.381 0.00 0.00 44.64 2.23
21 22 1.766496 CCGTAATGGGGGTGTCATAGT 59.234 52.381 0.00 0.00 0.00 2.12
22 23 2.171870 CCGTAATGGGGGTGTCATAGTT 59.828 50.000 0.00 0.00 0.00 2.24
23 24 3.388676 CCGTAATGGGGGTGTCATAGTTA 59.611 47.826 0.00 0.00 0.00 2.24
24 25 4.041198 CCGTAATGGGGGTGTCATAGTTAT 59.959 45.833 0.00 0.00 0.00 1.89
25 26 5.246656 CCGTAATGGGGGTGTCATAGTTATA 59.753 44.000 0.00 0.00 0.00 0.98
26 27 6.070424 CCGTAATGGGGGTGTCATAGTTATAT 60.070 42.308 0.00 0.00 0.00 0.86
27 28 7.039882 CGTAATGGGGGTGTCATAGTTATATC 58.960 42.308 0.00 0.00 0.00 1.63
28 29 7.310175 CGTAATGGGGGTGTCATAGTTATATCA 60.310 40.741 0.00 0.00 0.00 2.15
29 30 7.588866 AATGGGGGTGTCATAGTTATATCAT 57.411 36.000 0.00 0.00 0.00 2.45
30 31 6.373005 TGGGGGTGTCATAGTTATATCATG 57.627 41.667 0.00 0.00 0.00 3.07
31 32 5.186198 GGGGGTGTCATAGTTATATCATGC 58.814 45.833 0.00 0.00 0.00 4.06
32 33 5.280470 GGGGGTGTCATAGTTATATCATGCA 60.280 44.000 0.00 0.00 0.00 3.96
33 34 6.418101 GGGGTGTCATAGTTATATCATGCAT 58.582 40.000 0.00 0.00 0.00 3.96
34 35 6.317140 GGGGTGTCATAGTTATATCATGCATG 59.683 42.308 21.07 21.07 0.00 4.06
35 36 6.881065 GGGTGTCATAGTTATATCATGCATGT 59.119 38.462 25.43 15.34 0.00 3.21
36 37 7.391554 GGGTGTCATAGTTATATCATGCATGTT 59.608 37.037 25.43 19.74 0.00 2.71
37 38 9.435688 GGTGTCATAGTTATATCATGCATGTTA 57.564 33.333 25.43 21.22 0.00 2.41
39 40 9.154847 TGTCATAGTTATATCATGCATGTTAGC 57.845 33.333 25.43 16.49 0.00 3.09
40 41 9.376075 GTCATAGTTATATCATGCATGTTAGCT 57.624 33.333 25.43 21.32 34.99 3.32
44 45 8.138928 AGTTATATCATGCATGTTAGCTAGGA 57.861 34.615 25.43 3.97 34.99 2.94
45 46 8.597167 AGTTATATCATGCATGTTAGCTAGGAA 58.403 33.333 25.43 3.20 34.99 3.36
46 47 9.388506 GTTATATCATGCATGTTAGCTAGGAAT 57.611 33.333 25.43 10.47 34.99 3.01
47 48 9.964354 TTATATCATGCATGTTAGCTAGGAATT 57.036 29.630 25.43 6.75 34.99 2.17
48 49 8.874744 ATATCATGCATGTTAGCTAGGAATTT 57.125 30.769 25.43 1.27 34.99 1.82
49 50 7.592885 ATCATGCATGTTAGCTAGGAATTTT 57.407 32.000 25.43 0.00 34.99 1.82
50 51 7.408756 TCATGCATGTTAGCTAGGAATTTTT 57.591 32.000 25.43 0.00 34.99 1.94
73 74 9.474313 TTTTTATGAGGTGGCATAGAATTAAGT 57.526 29.630 0.00 0.00 32.75 2.24
74 75 8.450578 TTTATGAGGTGGCATAGAATTAAGTG 57.549 34.615 0.00 0.00 32.75 3.16
75 76 5.692115 TGAGGTGGCATAGAATTAAGTGA 57.308 39.130 0.00 0.00 0.00 3.41
76 77 6.061022 TGAGGTGGCATAGAATTAAGTGAA 57.939 37.500 0.00 0.00 0.00 3.18
77 78 6.480763 TGAGGTGGCATAGAATTAAGTGAAA 58.519 36.000 0.00 0.00 0.00 2.69
78 79 6.945435 TGAGGTGGCATAGAATTAAGTGAAAA 59.055 34.615 0.00 0.00 0.00 2.29
79 80 7.450014 TGAGGTGGCATAGAATTAAGTGAAAAA 59.550 33.333 0.00 0.00 0.00 1.94
144 145 9.884636 AAATATTGTACTAGTATGTGTCTTGCA 57.115 29.630 5.75 0.00 0.00 4.08
146 147 7.776933 ATTGTACTAGTATGTGTCTTGCATG 57.223 36.000 5.75 0.00 0.00 4.06
147 148 6.280855 TGTACTAGTATGTGTCTTGCATGT 57.719 37.500 5.75 0.00 0.00 3.21
148 149 6.330278 TGTACTAGTATGTGTCTTGCATGTC 58.670 40.000 5.75 0.00 0.00 3.06
149 150 5.405935 ACTAGTATGTGTCTTGCATGTCA 57.594 39.130 0.00 0.00 0.00 3.58
150 151 5.793817 ACTAGTATGTGTCTTGCATGTCAA 58.206 37.500 0.00 0.00 0.00 3.18
151 152 6.409704 ACTAGTATGTGTCTTGCATGTCAAT 58.590 36.000 0.00 2.01 33.57 2.57
152 153 7.555965 ACTAGTATGTGTCTTGCATGTCAATA 58.444 34.615 0.00 1.25 33.57 1.90
153 154 8.040727 ACTAGTATGTGTCTTGCATGTCAATAA 58.959 33.333 0.00 0.00 33.57 1.40
154 155 7.686438 AGTATGTGTCTTGCATGTCAATAAA 57.314 32.000 1.30 0.00 33.57 1.40
155 156 8.284945 AGTATGTGTCTTGCATGTCAATAAAT 57.715 30.769 1.30 0.00 33.57 1.40
156 157 9.394767 AGTATGTGTCTTGCATGTCAATAAATA 57.605 29.630 1.30 0.00 33.57 1.40
157 158 9.655769 GTATGTGTCTTGCATGTCAATAAATAG 57.344 33.333 1.30 0.00 33.57 1.73
158 159 7.087409 TGTGTCTTGCATGTCAATAAATAGG 57.913 36.000 1.30 0.00 33.57 2.57
159 160 6.883756 TGTGTCTTGCATGTCAATAAATAGGA 59.116 34.615 1.30 0.00 33.57 2.94
160 161 7.557358 TGTGTCTTGCATGTCAATAAATAGGAT 59.443 33.333 1.30 0.00 33.57 3.24
161 162 8.072567 GTGTCTTGCATGTCAATAAATAGGATC 58.927 37.037 1.30 0.00 33.57 3.36
162 163 7.774625 TGTCTTGCATGTCAATAAATAGGATCA 59.225 33.333 0.00 0.00 33.57 2.92
163 164 8.790718 GTCTTGCATGTCAATAAATAGGATCAT 58.209 33.333 0.00 0.00 33.57 2.45
164 165 9.006839 TCTTGCATGTCAATAAATAGGATCATC 57.993 33.333 0.00 0.00 33.57 2.92
165 166 8.929260 TTGCATGTCAATAAATAGGATCATCT 57.071 30.769 0.00 0.00 0.00 2.90
166 167 8.331730 TGCATGTCAATAAATAGGATCATCTG 57.668 34.615 0.00 0.00 0.00 2.90
167 168 8.158789 TGCATGTCAATAAATAGGATCATCTGA 58.841 33.333 0.00 0.00 0.00 3.27
168 169 8.666573 GCATGTCAATAAATAGGATCATCTGAG 58.333 37.037 0.00 0.00 0.00 3.35
169 170 9.939802 CATGTCAATAAATAGGATCATCTGAGA 57.060 33.333 0.00 0.00 0.00 3.27
245 246 9.914131 TCATATGCATGATACTAACTTGTACTC 57.086 33.333 10.16 0.00 36.22 2.59
246 247 9.144747 CATATGCATGATACTAACTTGTACTCC 57.855 37.037 10.16 0.00 33.67 3.85
247 248 5.914033 TGCATGATACTAACTTGTACTCCC 58.086 41.667 0.00 0.00 0.00 4.30
248 249 5.661312 TGCATGATACTAACTTGTACTCCCT 59.339 40.000 0.00 0.00 0.00 4.20
249 250 6.183360 TGCATGATACTAACTTGTACTCCCTC 60.183 42.308 0.00 0.00 0.00 4.30
250 251 6.739008 GCATGATACTAACTTGTACTCCCTCC 60.739 46.154 0.00 0.00 0.00 4.30
251 252 4.885907 TGATACTAACTTGTACTCCCTCCG 59.114 45.833 0.00 0.00 0.00 4.63
252 253 3.166560 ACTAACTTGTACTCCCTCCGT 57.833 47.619 0.00 0.00 0.00 4.69
253 254 3.504375 ACTAACTTGTACTCCCTCCGTT 58.496 45.455 0.00 0.00 0.00 4.44
254 255 3.899980 ACTAACTTGTACTCCCTCCGTTT 59.100 43.478 0.00 0.00 0.00 3.60
255 256 3.851458 AACTTGTACTCCCTCCGTTTT 57.149 42.857 0.00 0.00 0.00 2.43
256 257 3.851458 ACTTGTACTCCCTCCGTTTTT 57.149 42.857 0.00 0.00 0.00 1.94
257 258 4.961438 ACTTGTACTCCCTCCGTTTTTA 57.039 40.909 0.00 0.00 0.00 1.52
258 259 5.294734 ACTTGTACTCCCTCCGTTTTTAA 57.705 39.130 0.00 0.00 0.00 1.52
259 260 5.683681 ACTTGTACTCCCTCCGTTTTTAAA 58.316 37.500 0.00 0.00 0.00 1.52
260 261 6.301486 ACTTGTACTCCCTCCGTTTTTAAAT 58.699 36.000 0.00 0.00 0.00 1.40
261 262 7.452562 ACTTGTACTCCCTCCGTTTTTAAATA 58.547 34.615 0.00 0.00 0.00 1.40
262 263 8.105197 ACTTGTACTCCCTCCGTTTTTAAATAT 58.895 33.333 0.00 0.00 0.00 1.28
263 264 9.603921 CTTGTACTCCCTCCGTTTTTAAATATA 57.396 33.333 0.00 0.00 0.00 0.86
264 265 9.956640 TTGTACTCCCTCCGTTTTTAAATATAA 57.043 29.630 0.00 0.00 0.00 0.98
265 266 9.603921 TGTACTCCCTCCGTTTTTAAATATAAG 57.396 33.333 0.00 0.00 0.00 1.73
266 267 9.605275 GTACTCCCTCCGTTTTTAAATATAAGT 57.395 33.333 0.00 0.00 0.00 2.24
267 268 8.728337 ACTCCCTCCGTTTTTAAATATAAGTC 57.272 34.615 0.00 0.00 0.00 3.01
268 269 8.546322 ACTCCCTCCGTTTTTAAATATAAGTCT 58.454 33.333 0.00 0.00 0.00 3.24
269 270 9.392259 CTCCCTCCGTTTTTAAATATAAGTCTT 57.608 33.333 0.00 0.00 0.00 3.01
270 271 9.743581 TCCCTCCGTTTTTAAATATAAGTCTTT 57.256 29.630 0.00 0.00 0.00 2.52
271 272 9.999009 CCCTCCGTTTTTAAATATAAGTCTTTC 57.001 33.333 0.00 0.00 0.00 2.62
299 300 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
300 301 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
301 302 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
302 303 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
304 305 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
305 306 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
306 307 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
311 312 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
312 313 7.493645 TGGACTACATACGGATGTATATAGACG 59.506 40.741 20.64 9.79 45.42 4.18
313 314 7.493971 GGACTACATACGGATGTATATAGACGT 59.506 40.741 20.64 12.85 45.42 4.34
314 315 9.521503 GACTACATACGGATGTATATAGACGTA 57.478 37.037 20.64 9.65 45.42 3.57
315 316 9.526713 ACTACATACGGATGTATATAGACGTAG 57.473 37.037 20.64 9.36 45.42 3.51
316 317 9.526713 CTACATACGGATGTATATAGACGTAGT 57.473 37.037 20.64 11.55 45.77 2.73
333 334 6.907206 ACGTAGTCTAGAGTGTAGATTCAC 57.093 41.667 10.51 0.00 29.74 3.18
334 335 6.642430 ACGTAGTCTAGAGTGTAGATTCACT 58.358 40.000 10.51 0.00 44.85 3.41
344 345 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
345 346 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
346 347 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
347 348 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
348 349 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
349 350 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
350 351 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
351 352 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
352 353 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
353 354 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
354 355 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
355 356 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
356 357 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
357 358 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
358 359 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
359 360 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
360 361 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
361 362 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
362 363 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
363 364 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
364 365 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
365 366 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
366 367 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
367 368 7.063544 GCTCCGTATGTAGTCCATATTGAAATC 59.936 40.741 0.00 0.00 38.29 2.17
368 369 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
369 370 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
370 371 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
398 399 8.959705 AAAGACTTATATTTAAGAACGGAGGG 57.040 34.615 9.58 0.00 38.56 4.30
399 400 7.909485 AGACTTATATTTAAGAACGGAGGGA 57.091 36.000 9.58 0.00 38.56 4.20
400 401 7.953752 AGACTTATATTTAAGAACGGAGGGAG 58.046 38.462 9.58 0.00 38.56 4.30
401 402 7.564292 AGACTTATATTTAAGAACGGAGGGAGT 59.436 37.037 9.58 0.00 38.56 3.85
402 403 8.773033 ACTTATATTTAAGAACGGAGGGAGTA 57.227 34.615 9.58 0.00 38.56 2.59
403 404 9.205513 ACTTATATTTAAGAACGGAGGGAGTAA 57.794 33.333 9.58 0.00 38.56 2.24
404 405 9.473640 CTTATATTTAAGAACGGAGGGAGTAAC 57.526 37.037 0.00 0.00 37.59 2.50
405 406 7.672122 ATATTTAAGAACGGAGGGAGTAACT 57.328 36.000 0.00 0.00 0.00 2.24
406 407 5.813513 TTTAAGAACGGAGGGAGTAACTT 57.186 39.130 0.00 0.00 0.00 2.66
407 408 3.679824 AAGAACGGAGGGAGTAACTTG 57.320 47.619 0.00 0.00 0.00 3.16
408 409 2.606378 AGAACGGAGGGAGTAACTTGT 58.394 47.619 0.00 0.00 0.00 3.16
409 410 2.299297 AGAACGGAGGGAGTAACTTGTG 59.701 50.000 0.00 0.00 0.00 3.33
410 411 2.005370 ACGGAGGGAGTAACTTGTGA 57.995 50.000 0.00 0.00 0.00 3.58
411 412 2.537143 ACGGAGGGAGTAACTTGTGAT 58.463 47.619 0.00 0.00 0.00 3.06
412 413 3.705051 ACGGAGGGAGTAACTTGTGATA 58.295 45.455 0.00 0.00 0.00 2.15
413 414 3.446516 ACGGAGGGAGTAACTTGTGATAC 59.553 47.826 0.00 0.00 0.00 2.24
414 415 3.700038 CGGAGGGAGTAACTTGTGATACT 59.300 47.826 0.00 0.00 35.01 2.12
415 416 4.885907 CGGAGGGAGTAACTTGTGATACTA 59.114 45.833 0.00 0.00 32.92 1.82
416 417 5.221009 CGGAGGGAGTAACTTGTGATACTAC 60.221 48.000 0.00 0.00 32.92 2.73
417 418 5.655532 GGAGGGAGTAACTTGTGATACTACA 59.344 44.000 0.00 0.00 35.01 2.74
418 419 6.405619 GGAGGGAGTAACTTGTGATACTACAC 60.406 46.154 0.00 0.00 35.01 2.90
419 420 6.254522 AGGGAGTAACTTGTGATACTACACT 58.745 40.000 0.00 0.00 40.87 3.55
420 421 6.377712 AGGGAGTAACTTGTGATACTACACTC 59.622 42.308 0.00 0.00 40.87 3.51
421 422 6.405619 GGGAGTAACTTGTGATACTACACTCC 60.406 46.154 8.15 8.15 40.87 3.85
422 423 6.377712 GGAGTAACTTGTGATACTACACTCCT 59.622 42.308 9.19 0.00 40.87 3.69
423 424 7.393841 AGTAACTTGTGATACTACACTCCTC 57.606 40.000 0.00 0.00 40.87 3.71
424 425 6.946583 AGTAACTTGTGATACTACACTCCTCA 59.053 38.462 0.00 0.00 40.87 3.86
425 426 5.646577 ACTTGTGATACTACACTCCTCAC 57.353 43.478 0.00 0.00 40.87 3.51
426 427 5.077564 ACTTGTGATACTACACTCCTCACA 58.922 41.667 0.00 0.00 43.12 3.58
429 430 6.413783 TGTGATACTACACTCCTCACAAAA 57.586 37.500 1.48 0.00 42.20 2.44
430 431 6.822442 TGTGATACTACACTCCTCACAAAAA 58.178 36.000 1.48 0.00 42.20 1.94
455 456 8.706322 AAAAAGAACTTGTGATACTACCCATT 57.294 30.769 0.00 0.00 0.00 3.16
456 457 9.802039 AAAAAGAACTTGTGATACTACCCATTA 57.198 29.630 0.00 0.00 0.00 1.90
457 458 8.788325 AAAGAACTTGTGATACTACCCATTAC 57.212 34.615 0.00 0.00 0.00 1.89
458 459 7.490657 AGAACTTGTGATACTACCCATTACA 57.509 36.000 0.00 0.00 0.00 2.41
459 460 7.328737 AGAACTTGTGATACTACCCATTACAC 58.671 38.462 0.00 0.00 0.00 2.90
460 461 5.985911 ACTTGTGATACTACCCATTACACC 58.014 41.667 0.00 0.00 0.00 4.16
461 462 5.104652 ACTTGTGATACTACCCATTACACCC 60.105 44.000 0.00 0.00 0.00 4.61
462 463 4.363573 TGTGATACTACCCATTACACCCA 58.636 43.478 0.00 0.00 0.00 4.51
463 464 4.407621 TGTGATACTACCCATTACACCCAG 59.592 45.833 0.00 0.00 0.00 4.45
464 465 3.389983 TGATACTACCCATTACACCCAGC 59.610 47.826 0.00 0.00 0.00 4.85
465 466 0.916809 ACTACCCATTACACCCAGCC 59.083 55.000 0.00 0.00 0.00 4.85
466 467 1.213296 CTACCCATTACACCCAGCCT 58.787 55.000 0.00 0.00 0.00 4.58
467 468 1.564348 CTACCCATTACACCCAGCCTT 59.436 52.381 0.00 0.00 0.00 4.35
468 469 1.676248 ACCCATTACACCCAGCCTTA 58.324 50.000 0.00 0.00 0.00 2.69
469 470 2.214201 ACCCATTACACCCAGCCTTAT 58.786 47.619 0.00 0.00 0.00 1.73
470 471 3.399454 ACCCATTACACCCAGCCTTATA 58.601 45.455 0.00 0.00 0.00 0.98
471 472 3.394606 ACCCATTACACCCAGCCTTATAG 59.605 47.826 0.00 0.00 0.00 1.31
472 473 3.244911 CCCATTACACCCAGCCTTATAGG 60.245 52.174 0.00 0.00 38.80 2.57
485 486 4.025040 CCTTATAGGGCATGCATCAAGA 57.975 45.455 21.36 0.00 0.00 3.02
486 487 4.401022 CCTTATAGGGCATGCATCAAGAA 58.599 43.478 21.36 5.09 0.00 2.52
487 488 5.014858 CCTTATAGGGCATGCATCAAGAAT 58.985 41.667 21.36 5.21 0.00 2.40
488 489 5.105877 CCTTATAGGGCATGCATCAAGAATG 60.106 44.000 21.36 1.41 36.24 2.67
489 490 2.154567 AGGGCATGCATCAAGAATGT 57.845 45.000 21.36 0.00 35.50 2.71
490 491 1.754803 AGGGCATGCATCAAGAATGTG 59.245 47.619 21.36 0.00 35.50 3.21
491 492 1.202486 GGGCATGCATCAAGAATGTGG 60.202 52.381 21.36 0.00 35.50 4.17
492 493 1.479323 GGCATGCATCAAGAATGTGGT 59.521 47.619 21.36 0.00 35.50 4.16
493 494 2.093869 GGCATGCATCAAGAATGTGGTT 60.094 45.455 21.36 0.00 35.50 3.67
494 495 2.927477 GCATGCATCAAGAATGTGGTTG 59.073 45.455 14.21 0.00 35.50 3.77
495 496 3.367600 GCATGCATCAAGAATGTGGTTGA 60.368 43.478 14.21 0.00 35.50 3.18
496 497 4.421058 CATGCATCAAGAATGTGGTTGAG 58.579 43.478 0.00 0.00 36.16 3.02
497 498 3.753815 TGCATCAAGAATGTGGTTGAGA 58.246 40.909 0.00 0.00 36.16 3.27
498 499 4.338012 TGCATCAAGAATGTGGTTGAGAT 58.662 39.130 0.00 0.00 36.16 2.75
499 500 4.157105 TGCATCAAGAATGTGGTTGAGATG 59.843 41.667 0.00 0.00 36.16 2.90
500 501 4.439700 GCATCAAGAATGTGGTTGAGATGG 60.440 45.833 0.00 0.00 36.16 3.51
501 502 4.371624 TCAAGAATGTGGTTGAGATGGT 57.628 40.909 0.00 0.00 0.00 3.55
502 503 4.728772 TCAAGAATGTGGTTGAGATGGTT 58.271 39.130 0.00 0.00 0.00 3.67
503 504 5.875224 TCAAGAATGTGGTTGAGATGGTTA 58.125 37.500 0.00 0.00 0.00 2.85
504 505 5.939883 TCAAGAATGTGGTTGAGATGGTTAG 59.060 40.000 0.00 0.00 0.00 2.34
505 506 4.848357 AGAATGTGGTTGAGATGGTTAGG 58.152 43.478 0.00 0.00 0.00 2.69
506 507 4.289672 AGAATGTGGTTGAGATGGTTAGGT 59.710 41.667 0.00 0.00 0.00 3.08
507 508 3.417069 TGTGGTTGAGATGGTTAGGTG 57.583 47.619 0.00 0.00 0.00 4.00
508 509 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
509 510 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
510 511 3.054361 GTGGTTGAGATGGTTAGGTGGAT 60.054 47.826 0.00 0.00 0.00 3.41
511 512 4.163458 GTGGTTGAGATGGTTAGGTGGATA 59.837 45.833 0.00 0.00 0.00 2.59
512 513 4.408921 TGGTTGAGATGGTTAGGTGGATAG 59.591 45.833 0.00 0.00 0.00 2.08
513 514 4.409247 GGTTGAGATGGTTAGGTGGATAGT 59.591 45.833 0.00 0.00 0.00 2.12
514 515 5.360591 GTTGAGATGGTTAGGTGGATAGTG 58.639 45.833 0.00 0.00 0.00 2.74
515 516 3.967326 TGAGATGGTTAGGTGGATAGTGG 59.033 47.826 0.00 0.00 0.00 4.00
516 517 3.967987 GAGATGGTTAGGTGGATAGTGGT 59.032 47.826 0.00 0.00 0.00 4.16
517 518 5.145564 GAGATGGTTAGGTGGATAGTGGTA 58.854 45.833 0.00 0.00 0.00 3.25
518 519 5.727630 AGATGGTTAGGTGGATAGTGGTAT 58.272 41.667 0.00 0.00 0.00 2.73
519 520 5.780793 AGATGGTTAGGTGGATAGTGGTATC 59.219 44.000 0.00 0.00 35.19 2.24
530 531 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
531 532 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
532 533 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
533 534 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
551 552 2.876581 AGGGTTCAAATCCTGGTGTTC 58.123 47.619 0.00 0.00 38.36 3.18
552 553 1.539827 GGGTTCAAATCCTGGTGTTCG 59.460 52.381 0.00 0.00 0.00 3.95
553 554 1.068541 GGTTCAAATCCTGGTGTTCGC 60.069 52.381 0.00 0.00 0.00 4.70
554 555 1.606668 GTTCAAATCCTGGTGTTCGCA 59.393 47.619 0.00 0.00 0.00 5.10
555 556 2.198827 TCAAATCCTGGTGTTCGCAT 57.801 45.000 0.00 0.00 0.00 4.73
556 557 2.513753 TCAAATCCTGGTGTTCGCATT 58.486 42.857 0.00 0.00 0.00 3.56
557 558 3.680490 TCAAATCCTGGTGTTCGCATTA 58.320 40.909 0.00 0.00 0.00 1.90
558 559 4.269183 TCAAATCCTGGTGTTCGCATTAT 58.731 39.130 0.00 0.00 0.00 1.28
559 560 4.704540 TCAAATCCTGGTGTTCGCATTATT 59.295 37.500 0.00 0.00 0.00 1.40
560 561 4.900635 AATCCTGGTGTTCGCATTATTC 57.099 40.909 0.00 0.00 0.00 1.75
561 562 2.639065 TCCTGGTGTTCGCATTATTCC 58.361 47.619 0.00 0.00 0.00 3.01
562 563 2.238646 TCCTGGTGTTCGCATTATTCCT 59.761 45.455 0.00 0.00 0.00 3.36
563 564 2.355756 CCTGGTGTTCGCATTATTCCTG 59.644 50.000 0.00 0.00 0.00 3.86
564 565 2.355756 CTGGTGTTCGCATTATTCCTGG 59.644 50.000 0.00 0.00 0.00 4.45
565 566 2.026729 TGGTGTTCGCATTATTCCTGGA 60.027 45.455 0.00 0.00 0.00 3.86
566 567 3.214328 GGTGTTCGCATTATTCCTGGAT 58.786 45.455 0.00 0.00 0.00 3.41
567 568 3.632145 GGTGTTCGCATTATTCCTGGATT 59.368 43.478 0.00 0.00 0.00 3.01
568 569 4.097892 GGTGTTCGCATTATTCCTGGATTT 59.902 41.667 0.00 0.00 0.00 2.17
569 570 5.298276 GGTGTTCGCATTATTCCTGGATTTA 59.702 40.000 0.00 0.00 0.00 1.40
570 571 6.016276 GGTGTTCGCATTATTCCTGGATTTAT 60.016 38.462 0.00 0.00 0.00 1.40
571 572 7.425606 GTGTTCGCATTATTCCTGGATTTATT 58.574 34.615 0.00 0.00 0.00 1.40
572 573 7.920682 GTGTTCGCATTATTCCTGGATTTATTT 59.079 33.333 0.00 0.00 0.00 1.40
573 574 8.474025 TGTTCGCATTATTCCTGGATTTATTTT 58.526 29.630 0.00 0.00 0.00 1.82
574 575 9.959749 GTTCGCATTATTCCTGGATTTATTTTA 57.040 29.630 0.00 0.00 0.00 1.52
576 577 8.792633 TCGCATTATTCCTGGATTTATTTTAGG 58.207 33.333 0.00 0.00 0.00 2.69
577 578 8.792633 CGCATTATTCCTGGATTTATTTTAGGA 58.207 33.333 0.00 0.00 35.84 2.94
583 584 7.817418 TCCTGGATTTATTTTAGGATTTCCG 57.183 36.000 0.00 0.00 42.08 4.30
584 585 6.775629 TCCTGGATTTATTTTAGGATTTCCGG 59.224 38.462 0.00 0.00 42.08 5.14
585 586 6.399639 TGGATTTATTTTAGGATTTCCGGC 57.600 37.500 0.00 0.00 42.08 6.13
586 587 5.009210 TGGATTTATTTTAGGATTTCCGGCG 59.991 40.000 0.00 0.00 42.08 6.46
587 588 5.239963 GGATTTATTTTAGGATTTCCGGCGA 59.760 40.000 9.30 0.00 42.08 5.54
588 589 6.072119 GGATTTATTTTAGGATTTCCGGCGAT 60.072 38.462 9.30 0.00 42.08 4.58
589 590 5.682943 TTATTTTAGGATTTCCGGCGATG 57.317 39.130 9.30 0.00 42.08 3.84
590 591 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
591 592 0.179234 TTAGGATTTCCGGCGATGCA 59.821 50.000 9.30 0.00 42.08 3.96
592 593 0.531974 TAGGATTTCCGGCGATGCAC 60.532 55.000 9.30 0.00 42.08 4.57
593 594 1.819632 GGATTTCCGGCGATGCACT 60.820 57.895 9.30 0.00 0.00 4.40
594 595 1.376609 GGATTTCCGGCGATGCACTT 61.377 55.000 9.30 0.00 0.00 3.16
595 596 0.451783 GATTTCCGGCGATGCACTTT 59.548 50.000 9.30 0.00 0.00 2.66
596 597 0.451783 ATTTCCGGCGATGCACTTTC 59.548 50.000 9.30 0.00 0.00 2.62
597 598 0.886938 TTTCCGGCGATGCACTTTCA 60.887 50.000 9.30 0.00 0.00 2.69
598 599 1.298157 TTCCGGCGATGCACTTTCAG 61.298 55.000 9.30 0.00 0.00 3.02
599 600 2.034879 CCGGCGATGCACTTTCAGT 61.035 57.895 9.30 0.00 0.00 3.41
601 602 1.503542 GGCGATGCACTTTCAGTGG 59.496 57.895 6.05 0.00 46.01 4.00
602 603 1.503542 GCGATGCACTTTCAGTGGG 59.496 57.895 6.05 0.00 46.01 4.61
603 604 0.955428 GCGATGCACTTTCAGTGGGA 60.955 55.000 6.05 0.00 46.01 4.37
604 605 1.081892 CGATGCACTTTCAGTGGGAG 58.918 55.000 6.05 0.00 46.01 4.30
605 606 1.457346 GATGCACTTTCAGTGGGAGG 58.543 55.000 6.05 0.00 46.01 4.30
606 607 1.003580 GATGCACTTTCAGTGGGAGGA 59.996 52.381 6.05 0.00 46.01 3.71
607 608 0.397941 TGCACTTTCAGTGGGAGGAG 59.602 55.000 6.05 0.00 46.01 3.69
608 609 0.687354 GCACTTTCAGTGGGAGGAGA 59.313 55.000 6.05 0.00 46.01 3.71
609 610 1.609320 GCACTTTCAGTGGGAGGAGAC 60.609 57.143 6.05 0.00 46.01 3.36
610 611 0.969894 ACTTTCAGTGGGAGGAGACG 59.030 55.000 0.00 0.00 0.00 4.18
611 612 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
612 613 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
613 614 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
625 626 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
626 627 2.051076 CGTTCCCGTCGACGACAA 60.051 61.111 37.65 25.24 41.53 3.18
627 628 2.078914 CGTTCCCGTCGACGACAAG 61.079 63.158 37.65 20.95 41.53 3.16
628 629 1.731969 GTTCCCGTCGACGACAAGG 60.732 63.158 37.65 28.37 43.02 3.61
629 630 3.562779 TTCCCGTCGACGACAAGGC 62.563 63.158 37.65 0.45 43.02 4.35
636 637 3.706140 GACGACAAGGCGCCTATG 58.294 61.111 33.07 29.05 33.86 2.23
637 638 1.883084 GACGACAAGGCGCCTATGG 60.883 63.158 33.07 23.84 33.86 2.74
638 639 2.186903 CGACAAGGCGCCTATGGT 59.813 61.111 33.07 27.34 0.00 3.55
639 640 2.173669 CGACAAGGCGCCTATGGTG 61.174 63.158 33.07 26.40 36.10 4.17
640 641 1.819632 GACAAGGCGCCTATGGTGG 60.820 63.158 33.07 17.06 33.18 4.61
652 653 4.813296 CCTATGGTGGCTTTCGTAAATC 57.187 45.455 0.00 0.00 0.00 2.17
653 654 4.451900 CCTATGGTGGCTTTCGTAAATCT 58.548 43.478 0.00 0.00 0.00 2.40
654 655 4.511826 CCTATGGTGGCTTTCGTAAATCTC 59.488 45.833 0.00 0.00 0.00 2.75
655 656 2.343101 TGGTGGCTTTCGTAAATCTCG 58.657 47.619 0.00 0.00 0.00 4.04
656 657 1.664151 GGTGGCTTTCGTAAATCTCGG 59.336 52.381 0.00 0.00 0.00 4.63
657 658 1.664151 GTGGCTTTCGTAAATCTCGGG 59.336 52.381 0.00 0.00 0.00 5.14
658 659 1.296727 GGCTTTCGTAAATCTCGGGG 58.703 55.000 0.00 0.00 0.00 5.73
659 660 1.406477 GGCTTTCGTAAATCTCGGGGT 60.406 52.381 0.00 0.00 0.00 4.95
660 661 2.159057 GGCTTTCGTAAATCTCGGGGTA 60.159 50.000 0.00 0.00 0.00 3.69
661 662 3.121544 GCTTTCGTAAATCTCGGGGTAG 58.878 50.000 0.00 0.00 0.00 3.18
662 663 3.714391 CTTTCGTAAATCTCGGGGTAGG 58.286 50.000 0.00 0.00 0.00 3.18
663 664 1.696063 TCGTAAATCTCGGGGTAGGG 58.304 55.000 0.00 0.00 0.00 3.53
664 665 1.063717 TCGTAAATCTCGGGGTAGGGT 60.064 52.381 0.00 0.00 0.00 4.34
665 666 1.068127 CGTAAATCTCGGGGTAGGGTG 59.932 57.143 0.00 0.00 0.00 4.61
666 667 2.113807 GTAAATCTCGGGGTAGGGTGT 58.886 52.381 0.00 0.00 0.00 4.16
667 668 2.555732 AAATCTCGGGGTAGGGTGTA 57.444 50.000 0.00 0.00 0.00 2.90
668 669 1.785647 AATCTCGGGGTAGGGTGTAC 58.214 55.000 0.00 0.00 0.00 2.90
669 670 0.466922 ATCTCGGGGTAGGGTGTACG 60.467 60.000 0.00 0.00 0.00 3.67
670 671 1.379044 CTCGGGGTAGGGTGTACGT 60.379 63.158 0.00 0.00 0.00 3.57
671 672 1.660560 CTCGGGGTAGGGTGTACGTG 61.661 65.000 0.00 0.00 0.00 4.49
672 673 1.978617 CGGGGTAGGGTGTACGTGT 60.979 63.158 0.00 0.00 0.00 4.49
673 674 1.593265 GGGGTAGGGTGTACGTGTG 59.407 63.158 0.00 0.00 0.00 3.82
674 675 1.187567 GGGGTAGGGTGTACGTGTGT 61.188 60.000 0.00 0.00 0.00 3.72
675 676 0.037975 GGGTAGGGTGTACGTGTGTG 60.038 60.000 0.00 0.00 0.00 3.82
676 677 0.675633 GGTAGGGTGTACGTGTGTGT 59.324 55.000 0.00 0.00 0.00 3.72
677 678 1.069049 GGTAGGGTGTACGTGTGTGTT 59.931 52.381 0.00 0.00 0.00 3.32
678 679 2.483538 GGTAGGGTGTACGTGTGTGTTT 60.484 50.000 0.00 0.00 0.00 2.83
679 680 1.944032 AGGGTGTACGTGTGTGTTTC 58.056 50.000 0.00 0.00 0.00 2.78
680 681 1.207570 AGGGTGTACGTGTGTGTTTCA 59.792 47.619 0.00 0.00 0.00 2.69
681 682 2.158871 AGGGTGTACGTGTGTGTTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
682 683 3.069872 AGGGTGTACGTGTGTGTTTCATA 59.930 43.478 0.00 0.00 0.00 2.15
683 684 3.430895 GGGTGTACGTGTGTGTTTCATAG 59.569 47.826 0.00 0.00 0.00 2.23
684 685 4.300803 GGTGTACGTGTGTGTTTCATAGA 58.699 43.478 0.00 0.00 0.00 1.98
685 686 4.384846 GGTGTACGTGTGTGTTTCATAGAG 59.615 45.833 0.00 0.00 0.00 2.43
686 687 5.217393 GTGTACGTGTGTGTTTCATAGAGA 58.783 41.667 0.00 0.00 0.00 3.10
687 688 5.862323 GTGTACGTGTGTGTTTCATAGAGAT 59.138 40.000 0.00 0.00 0.00 2.75
688 689 5.861787 TGTACGTGTGTGTTTCATAGAGATG 59.138 40.000 0.00 0.00 0.00 2.90
689 690 5.134202 ACGTGTGTGTTTCATAGAGATGA 57.866 39.130 0.00 0.00 40.45 2.92
690 691 5.164233 ACGTGTGTGTTTCATAGAGATGAG 58.836 41.667 0.00 0.00 43.03 2.90
691 692 5.164233 CGTGTGTGTTTCATAGAGATGAGT 58.836 41.667 0.00 0.00 43.03 3.41
692 693 5.061435 CGTGTGTGTTTCATAGAGATGAGTG 59.939 44.000 0.00 0.00 43.03 3.51
693 694 5.928839 GTGTGTGTTTCATAGAGATGAGTGT 59.071 40.000 0.00 0.00 43.03 3.55
694 695 7.090808 GTGTGTGTTTCATAGAGATGAGTGTA 58.909 38.462 0.00 0.00 43.03 2.90
695 696 7.761704 GTGTGTGTTTCATAGAGATGAGTGTAT 59.238 37.037 0.00 0.00 43.03 2.29
696 697 7.761249 TGTGTGTTTCATAGAGATGAGTGTATG 59.239 37.037 0.00 0.00 43.03 2.39
697 698 6.758416 TGTGTTTCATAGAGATGAGTGTATGC 59.242 38.462 0.00 0.00 43.03 3.14
698 699 5.979517 TGTTTCATAGAGATGAGTGTATGCG 59.020 40.000 0.00 0.00 43.03 4.73
699 700 4.166187 TCATAGAGATGAGTGTATGCGC 57.834 45.455 0.00 0.00 37.15 6.09
700 701 2.688364 TAGAGATGAGTGTATGCGCG 57.312 50.000 0.00 0.00 0.00 6.86
701 702 0.741326 AGAGATGAGTGTATGCGCGT 59.259 50.000 8.43 7.55 0.00 6.01
702 703 1.947456 AGAGATGAGTGTATGCGCGTA 59.053 47.619 8.43 4.92 0.00 4.42
703 704 2.554462 AGAGATGAGTGTATGCGCGTAT 59.446 45.455 15.52 15.52 0.00 3.06
704 705 3.751698 AGAGATGAGTGTATGCGCGTATA 59.248 43.478 13.13 13.13 0.00 1.47
705 706 4.396478 AGAGATGAGTGTATGCGCGTATAT 59.604 41.667 19.79 4.31 0.00 0.86
706 707 5.585047 AGAGATGAGTGTATGCGCGTATATA 59.415 40.000 19.79 14.59 0.00 0.86
707 708 6.261158 AGAGATGAGTGTATGCGCGTATATAT 59.739 38.462 19.79 9.03 0.00 0.86
708 709 6.202226 AGATGAGTGTATGCGCGTATATATG 58.798 40.000 19.79 0.00 0.00 1.78
709 710 5.554822 TGAGTGTATGCGCGTATATATGA 57.445 39.130 19.79 3.29 0.00 2.15
710 711 5.569413 TGAGTGTATGCGCGTATATATGAG 58.431 41.667 19.79 3.76 0.00 2.90
711 712 4.352039 AGTGTATGCGCGTATATATGAGC 58.648 43.478 19.79 20.14 38.31 4.26
716 717 2.959586 CGCGTATATATGAGCGCTTG 57.040 50.000 13.26 7.35 46.56 4.01
717 718 2.251040 CGCGTATATATGAGCGCTTGT 58.749 47.619 13.26 5.98 46.56 3.16
718 719 2.026860 CGCGTATATATGAGCGCTTGTG 59.973 50.000 13.26 6.56 46.56 3.33
719 720 2.987149 GCGTATATATGAGCGCTTGTGT 59.013 45.455 13.26 4.27 45.48 3.72
720 721 3.059570 GCGTATATATGAGCGCTTGTGTC 59.940 47.826 13.26 0.00 45.48 3.67
721 722 4.476862 CGTATATATGAGCGCTTGTGTCT 58.523 43.478 13.26 0.00 0.00 3.41
722 723 4.322009 CGTATATATGAGCGCTTGTGTCTG 59.678 45.833 13.26 0.00 0.00 3.51
723 724 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
724 725 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
725 726 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
726 727 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
727 728 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
728 729 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
729 730 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
730 731 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
731 732 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
732 733 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
733 734 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
734 735 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
735 736 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
736 737 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
737 738 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
738 739 5.122519 TGTGTCTGTACTGATGCTCAAAAA 58.877 37.500 5.69 0.00 0.00 1.94
905 906 3.880162 TAAACGCCCCCGGTTCACG 62.880 63.158 0.00 0.70 41.22 4.35
916 919 2.251642 GGTTCACGTGTCAGTGCCC 61.252 63.158 16.51 2.63 41.61 5.36
944 947 3.006112 TCTGAGTATCTGACCGCTCTT 57.994 47.619 0.00 0.00 38.20 2.85
984 994 2.408271 TAGATCCAAAGCCAGCACAG 57.592 50.000 0.00 0.00 0.00 3.66
986 996 2.262471 GATCCAAAGCCAGCACAGCG 62.262 60.000 0.00 0.00 34.64 5.18
987 997 2.753009 ATCCAAAGCCAGCACAGCGA 62.753 55.000 0.00 0.00 34.64 4.93
1050 1068 3.406361 GCCGCCATCATCTACGCG 61.406 66.667 3.53 3.53 44.08 6.01
1218 1236 3.475494 ACGGTGCAGGTGGTGTCA 61.475 61.111 0.00 0.00 0.00 3.58
1243 1261 2.050934 AACTACCGGCTCCTCGTCC 61.051 63.158 0.00 0.00 0.00 4.79
1368 1386 2.566529 GCGTAGGCCTTTTGGTGC 59.433 61.111 12.58 2.35 42.99 5.01
1393 1415 5.484173 TTGTAATTCTTGATGGACATCGC 57.516 39.130 7.70 0.00 40.63 4.58
1481 1503 8.753133 TGACTCACATAATCTAAATGTCACTCT 58.247 33.333 0.00 0.00 35.39 3.24
1486 1508 7.489435 CACATAATCTAAATGTCACTCTCGTGT 59.511 37.037 0.00 0.00 41.89 4.49
1500 1522 7.271653 GTCACTCTCGTGTGTATTCTAGAAAAG 59.728 40.741 9.71 0.00 41.89 2.27
1525 1562 6.670695 AAATTTTGAGCTAACTGGTGGAAT 57.329 33.333 0.00 0.00 0.00 3.01
1527 1564 6.759497 ATTTTGAGCTAACTGGTGGAATAC 57.241 37.500 0.00 0.00 0.00 1.89
1531 1568 2.829720 AGCTAACTGGTGGAATACGTGA 59.170 45.455 0.00 0.00 0.00 4.35
1702 2072 6.348050 GCTTTTATGCTATCTACACCATCAGC 60.348 42.308 0.00 0.00 0.00 4.26
2105 2475 7.859598 TGGCTGTAAAATACTTTGCAAAATTG 58.140 30.769 13.84 4.32 36.81 2.32
2219 2590 0.250727 TCCTCAACGAAAGGCTTGGG 60.251 55.000 0.00 0.00 33.65 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.766496 ACTATGACACCCCCATTACGG 59.234 52.381 0.00 0.00 0.00 4.02
2 3 3.553828 AACTATGACACCCCCATTACG 57.446 47.619 0.00 0.00 0.00 3.18
3 4 7.913789 TGATATAACTATGACACCCCCATTAC 58.086 38.462 0.00 0.00 0.00 1.89
4 5 8.548025 CATGATATAACTATGACACCCCCATTA 58.452 37.037 0.00 0.00 0.00 1.90
5 6 7.405292 CATGATATAACTATGACACCCCCATT 58.595 38.462 0.00 0.00 0.00 3.16
6 7 6.579042 GCATGATATAACTATGACACCCCCAT 60.579 42.308 0.00 0.00 0.00 4.00
7 8 5.280470 GCATGATATAACTATGACACCCCCA 60.280 44.000 0.00 0.00 0.00 4.96
8 9 5.186198 GCATGATATAACTATGACACCCCC 58.814 45.833 0.00 0.00 0.00 5.40
9 10 5.804639 TGCATGATATAACTATGACACCCC 58.195 41.667 0.00 0.00 0.00 4.95
10 11 6.881065 ACATGCATGATATAACTATGACACCC 59.119 38.462 32.75 0.00 0.00 4.61
11 12 7.912056 ACATGCATGATATAACTATGACACC 57.088 36.000 32.75 0.00 0.00 4.16
13 14 9.154847 GCTAACATGCATGATATAACTATGACA 57.845 33.333 32.75 0.67 0.00 3.58
14 15 9.376075 AGCTAACATGCATGATATAACTATGAC 57.624 33.333 32.75 8.12 34.99 3.06
18 19 9.255029 TCCTAGCTAACATGCATGATATAACTA 57.745 33.333 32.75 21.50 34.99 2.24
19 20 8.138928 TCCTAGCTAACATGCATGATATAACT 57.861 34.615 32.75 21.53 34.99 2.24
20 21 8.777865 TTCCTAGCTAACATGCATGATATAAC 57.222 34.615 32.75 16.38 34.99 1.89
21 22 9.964354 AATTCCTAGCTAACATGCATGATATAA 57.036 29.630 32.75 12.09 34.99 0.98
22 23 9.964354 AAATTCCTAGCTAACATGCATGATATA 57.036 29.630 32.75 19.33 34.99 0.86
23 24 8.874744 AAATTCCTAGCTAACATGCATGATAT 57.125 30.769 32.75 19.25 34.99 1.63
24 25 8.696043 AAAATTCCTAGCTAACATGCATGATA 57.304 30.769 32.75 23.37 34.99 2.15
25 26 7.592885 AAAATTCCTAGCTAACATGCATGAT 57.407 32.000 32.75 23.52 34.99 2.45
26 27 7.408756 AAAAATTCCTAGCTAACATGCATGA 57.591 32.000 32.75 10.86 34.99 3.07
47 48 9.474313 ACTTAATTCTATGCCACCTCATAAAAA 57.526 29.630 0.00 0.00 0.00 1.94
48 49 8.902806 CACTTAATTCTATGCCACCTCATAAAA 58.097 33.333 0.00 0.00 0.00 1.52
49 50 8.271458 TCACTTAATTCTATGCCACCTCATAAA 58.729 33.333 0.00 0.00 0.00 1.40
50 51 7.801104 TCACTTAATTCTATGCCACCTCATAA 58.199 34.615 0.00 0.00 0.00 1.90
51 52 7.373617 TCACTTAATTCTATGCCACCTCATA 57.626 36.000 0.00 0.00 0.00 2.15
52 53 6.252599 TCACTTAATTCTATGCCACCTCAT 57.747 37.500 0.00 0.00 0.00 2.90
53 54 5.692115 TCACTTAATTCTATGCCACCTCA 57.308 39.130 0.00 0.00 0.00 3.86
54 55 7.391148 TTTTCACTTAATTCTATGCCACCTC 57.609 36.000 0.00 0.00 0.00 3.85
55 56 7.775053 TTTTTCACTTAATTCTATGCCACCT 57.225 32.000 0.00 0.00 0.00 4.00
118 119 9.884636 TGCAAGACACATACTAGTACAATATTT 57.115 29.630 4.31 0.00 0.00 1.40
120 121 9.481340 CATGCAAGACACATACTAGTACAATAT 57.519 33.333 4.31 0.00 0.00 1.28
121 122 8.474831 ACATGCAAGACACATACTAGTACAATA 58.525 33.333 4.31 0.00 0.00 1.90
122 123 7.331026 ACATGCAAGACACATACTAGTACAAT 58.669 34.615 4.31 0.00 0.00 2.71
123 124 6.697395 ACATGCAAGACACATACTAGTACAA 58.303 36.000 4.31 0.00 0.00 2.41
124 125 6.071616 TGACATGCAAGACACATACTAGTACA 60.072 38.462 4.31 0.00 0.00 2.90
125 126 6.330278 TGACATGCAAGACACATACTAGTAC 58.670 40.000 4.31 0.00 0.00 2.73
126 127 6.524101 TGACATGCAAGACACATACTAGTA 57.476 37.500 4.77 4.77 0.00 1.82
127 128 5.405935 TGACATGCAAGACACATACTAGT 57.594 39.130 0.00 0.00 0.00 2.57
128 129 6.915544 ATTGACATGCAAGACACATACTAG 57.084 37.500 0.00 0.00 40.42 2.57
129 130 8.785329 TTTATTGACATGCAAGACACATACTA 57.215 30.769 0.00 0.00 40.42 1.82
130 131 7.686438 TTTATTGACATGCAAGACACATACT 57.314 32.000 0.00 0.00 40.42 2.12
131 132 9.655769 CTATTTATTGACATGCAAGACACATAC 57.344 33.333 0.00 0.00 40.42 2.39
132 133 8.839343 CCTATTTATTGACATGCAAGACACATA 58.161 33.333 0.00 0.00 40.42 2.29
133 134 7.557358 TCCTATTTATTGACATGCAAGACACAT 59.443 33.333 0.00 0.00 40.42 3.21
134 135 6.883756 TCCTATTTATTGACATGCAAGACACA 59.116 34.615 0.00 0.00 40.42 3.72
135 136 7.320443 TCCTATTTATTGACATGCAAGACAC 57.680 36.000 0.00 0.00 40.42 3.67
136 137 7.774625 TGATCCTATTTATTGACATGCAAGACA 59.225 33.333 0.00 0.00 40.42 3.41
137 138 8.158169 TGATCCTATTTATTGACATGCAAGAC 57.842 34.615 0.00 0.00 40.42 3.01
138 139 8.929260 ATGATCCTATTTATTGACATGCAAGA 57.071 30.769 0.00 1.92 40.42 3.02
139 140 9.011095 AGATGATCCTATTTATTGACATGCAAG 57.989 33.333 0.00 0.00 40.42 4.01
140 141 8.789762 CAGATGATCCTATTTATTGACATGCAA 58.210 33.333 0.00 5.27 41.53 4.08
141 142 8.158789 TCAGATGATCCTATTTATTGACATGCA 58.841 33.333 0.00 0.00 0.00 3.96
142 143 8.557592 TCAGATGATCCTATTTATTGACATGC 57.442 34.615 0.00 0.00 0.00 4.06
143 144 9.939802 TCTCAGATGATCCTATTTATTGACATG 57.060 33.333 0.00 0.00 0.00 3.21
219 220 9.914131 GAGTACAAGTTAGTATCATGCATATGA 57.086 33.333 6.97 0.00 46.67 2.15
220 221 9.144747 GGAGTACAAGTTAGTATCATGCATATG 57.855 37.037 0.00 0.00 35.57 1.78
221 222 8.314751 GGGAGTACAAGTTAGTATCATGCATAT 58.685 37.037 0.00 0.00 0.00 1.78
222 223 7.509318 AGGGAGTACAAGTTAGTATCATGCATA 59.491 37.037 0.00 0.00 0.00 3.14
223 224 6.327626 AGGGAGTACAAGTTAGTATCATGCAT 59.672 38.462 0.00 0.00 0.00 3.96
224 225 5.661312 AGGGAGTACAAGTTAGTATCATGCA 59.339 40.000 0.00 0.00 0.00 3.96
225 226 6.163135 AGGGAGTACAAGTTAGTATCATGC 57.837 41.667 0.00 0.00 0.00 4.06
226 227 6.515200 CGGAGGGAGTACAAGTTAGTATCATG 60.515 46.154 0.00 0.00 0.00 3.07
227 228 5.535406 CGGAGGGAGTACAAGTTAGTATCAT 59.465 44.000 0.00 0.00 0.00 2.45
228 229 4.885907 CGGAGGGAGTACAAGTTAGTATCA 59.114 45.833 0.00 0.00 0.00 2.15
229 230 4.886489 ACGGAGGGAGTACAAGTTAGTATC 59.114 45.833 0.00 0.00 0.00 2.24
230 231 4.864726 ACGGAGGGAGTACAAGTTAGTAT 58.135 43.478 0.00 0.00 0.00 2.12
231 232 4.307032 ACGGAGGGAGTACAAGTTAGTA 57.693 45.455 0.00 0.00 0.00 1.82
232 233 3.166560 ACGGAGGGAGTACAAGTTAGT 57.833 47.619 0.00 0.00 0.00 2.24
233 234 4.532314 AAACGGAGGGAGTACAAGTTAG 57.468 45.455 0.00 0.00 0.00 2.34
234 235 4.961438 AAAACGGAGGGAGTACAAGTTA 57.039 40.909 0.00 0.00 0.00 2.24
235 236 3.851458 AAAACGGAGGGAGTACAAGTT 57.149 42.857 0.00 0.00 0.00 2.66
236 237 3.851458 AAAAACGGAGGGAGTACAAGT 57.149 42.857 0.00 0.00 0.00 3.16
237 238 6.812879 ATTTAAAAACGGAGGGAGTACAAG 57.187 37.500 0.00 0.00 0.00 3.16
238 239 9.956640 TTATATTTAAAAACGGAGGGAGTACAA 57.043 29.630 0.00 0.00 0.00 2.41
239 240 9.603921 CTTATATTTAAAAACGGAGGGAGTACA 57.396 33.333 0.00 0.00 0.00 2.90
240 241 9.605275 ACTTATATTTAAAAACGGAGGGAGTAC 57.395 33.333 0.00 0.00 0.00 2.73
241 242 9.822185 GACTTATATTTAAAAACGGAGGGAGTA 57.178 33.333 0.00 0.00 0.00 2.59
242 243 8.546322 AGACTTATATTTAAAAACGGAGGGAGT 58.454 33.333 0.00 0.00 0.00 3.85
243 244 8.959705 AGACTTATATTTAAAAACGGAGGGAG 57.040 34.615 0.00 0.00 0.00 4.30
244 245 9.743581 AAAGACTTATATTTAAAAACGGAGGGA 57.256 29.630 0.00 0.00 0.00 4.20
245 246 9.999009 GAAAGACTTATATTTAAAAACGGAGGG 57.001 33.333 0.00 0.00 0.00 4.30
273 274 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
274 275 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
275 276 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
276 277 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
277 278 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
278 279 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
279 280 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
280 281 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
292 293 8.256605 AGACTACGTCTATATACATCCGTATGT 58.743 37.037 0.00 0.00 43.89 2.29
293 294 8.645730 AGACTACGTCTATATACATCCGTATG 57.354 38.462 0.00 0.00 41.51 2.39
294 295 9.964303 CTAGACTACGTCTATATACATCCGTAT 57.036 37.037 0.00 0.00 43.08 3.06
295 296 9.178758 TCTAGACTACGTCTATATACATCCGTA 57.821 37.037 0.00 0.00 43.08 4.02
296 297 8.060931 TCTAGACTACGTCTATATACATCCGT 57.939 38.462 0.00 0.00 43.08 4.69
297 298 8.190122 ACTCTAGACTACGTCTATATACATCCG 58.810 40.741 0.00 0.00 43.08 4.18
298 299 9.304731 CACTCTAGACTACGTCTATATACATCC 57.695 40.741 0.00 0.00 43.08 3.51
299 300 9.859427 ACACTCTAGACTACGTCTATATACATC 57.141 37.037 0.00 0.00 43.08 3.06
306 307 8.640651 TGAATCTACACTCTAGACTACGTCTAT 58.359 37.037 0.00 0.00 43.08 1.98
307 308 7.920151 GTGAATCTACACTCTAGACTACGTCTA 59.080 40.741 0.00 3.93 39.31 2.59
308 309 6.757947 GTGAATCTACACTCTAGACTACGTCT 59.242 42.308 0.00 1.82 40.41 4.18
309 310 6.757947 AGTGAATCTACACTCTAGACTACGTC 59.242 42.308 0.00 0.00 46.36 4.34
310 311 6.642430 AGTGAATCTACACTCTAGACTACGT 58.358 40.000 0.00 0.00 46.36 3.57
322 323 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
323 324 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
324 325 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
325 326 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
326 327 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
327 328 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
328 329 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
329 330 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
330 331 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
331 332 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
332 333 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
333 334 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
334 335 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
335 336 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
336 337 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
337 338 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
338 339 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
339 340 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
340 341 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
341 342 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
342 343 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
343 344 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
344 345 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
372 373 9.392259 CCCTCCGTTCTTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 39.65 2.27
373 374 8.765517 TCCCTCCGTTCTTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 39.65 2.52
374 375 8.315220 TCCCTCCGTTCTTAAATATAAGTCTT 57.685 34.615 0.00 0.00 39.65 3.01
375 376 7.564292 ACTCCCTCCGTTCTTAAATATAAGTCT 59.436 37.037 0.00 0.00 39.65 3.24
376 377 7.724287 ACTCCCTCCGTTCTTAAATATAAGTC 58.276 38.462 0.00 0.00 39.65 3.01
377 378 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
378 379 9.473640 GTTACTCCCTCCGTTCTTAAATATAAG 57.526 37.037 0.00 0.00 39.97 1.73
379 380 9.205513 AGTTACTCCCTCCGTTCTTAAATATAA 57.794 33.333 0.00 0.00 0.00 0.98
380 381 8.773033 AGTTACTCCCTCCGTTCTTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
381 382 7.672122 AGTTACTCCCTCCGTTCTTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
382 383 7.038799 ACAAGTTACTCCCTCCGTTCTTAAATA 60.039 37.037 0.00 0.00 0.00 1.40
383 384 6.171213 CAAGTTACTCCCTCCGTTCTTAAAT 58.829 40.000 0.00 0.00 0.00 1.40
384 385 5.070847 ACAAGTTACTCCCTCCGTTCTTAAA 59.929 40.000 0.00 0.00 0.00 1.52
385 386 4.590222 ACAAGTTACTCCCTCCGTTCTTAA 59.410 41.667 0.00 0.00 0.00 1.85
386 387 4.021719 CACAAGTTACTCCCTCCGTTCTTA 60.022 45.833 0.00 0.00 0.00 2.10
387 388 2.970640 ACAAGTTACTCCCTCCGTTCTT 59.029 45.455 0.00 0.00 0.00 2.52
388 389 2.299297 CACAAGTTACTCCCTCCGTTCT 59.701 50.000 0.00 0.00 0.00 3.01
389 390 2.298163 TCACAAGTTACTCCCTCCGTTC 59.702 50.000 0.00 0.00 0.00 3.95
390 391 2.322658 TCACAAGTTACTCCCTCCGTT 58.677 47.619 0.00 0.00 0.00 4.44
391 392 2.005370 TCACAAGTTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
392 393 3.700038 AGTATCACAAGTTACTCCCTCCG 59.300 47.826 0.00 0.00 0.00 4.63
393 394 5.655532 TGTAGTATCACAAGTTACTCCCTCC 59.344 44.000 0.00 0.00 33.49 4.30
394 395 6.377712 AGTGTAGTATCACAAGTTACTCCCTC 59.622 42.308 0.00 0.00 40.37 4.30
395 396 6.254522 AGTGTAGTATCACAAGTTACTCCCT 58.745 40.000 0.00 0.00 40.37 4.20
396 397 6.405619 GGAGTGTAGTATCACAAGTTACTCCC 60.406 46.154 0.00 0.00 40.37 4.30
397 398 6.377712 AGGAGTGTAGTATCACAAGTTACTCC 59.622 42.308 10.70 10.70 40.37 3.85
398 399 7.120873 TGAGGAGTGTAGTATCACAAGTTACTC 59.879 40.741 0.00 0.00 40.37 2.59
399 400 6.946583 TGAGGAGTGTAGTATCACAAGTTACT 59.053 38.462 0.00 0.00 40.37 2.24
400 401 7.028361 GTGAGGAGTGTAGTATCACAAGTTAC 58.972 42.308 0.00 0.00 39.97 2.50
401 402 6.717997 TGTGAGGAGTGTAGTATCACAAGTTA 59.282 38.462 3.98 0.00 45.21 2.24
402 403 5.538813 TGTGAGGAGTGTAGTATCACAAGTT 59.461 40.000 3.98 0.00 45.21 2.66
403 404 5.077564 TGTGAGGAGTGTAGTATCACAAGT 58.922 41.667 3.98 0.00 45.21 3.16
404 405 5.644977 TGTGAGGAGTGTAGTATCACAAG 57.355 43.478 3.98 0.00 45.21 3.16
406 407 6.413783 TTTTGTGAGGAGTGTAGTATCACA 57.586 37.500 2.39 2.39 46.18 3.58
430 431 8.706322 AATGGGTAGTATCACAAGTTCTTTTT 57.294 30.769 0.00 0.00 0.00 1.94
431 432 9.227777 GTAATGGGTAGTATCACAAGTTCTTTT 57.772 33.333 0.00 0.00 0.00 2.27
432 433 8.380099 TGTAATGGGTAGTATCACAAGTTCTTT 58.620 33.333 0.00 0.00 0.00 2.52
433 434 7.822822 GTGTAATGGGTAGTATCACAAGTTCTT 59.177 37.037 0.00 0.00 0.00 2.52
434 435 7.328737 GTGTAATGGGTAGTATCACAAGTTCT 58.671 38.462 0.00 0.00 0.00 3.01
435 436 6.537660 GGTGTAATGGGTAGTATCACAAGTTC 59.462 42.308 0.00 0.00 0.00 3.01
436 437 6.412214 GGTGTAATGGGTAGTATCACAAGTT 58.588 40.000 0.00 0.00 0.00 2.66
437 438 5.104652 GGGTGTAATGGGTAGTATCACAAGT 60.105 44.000 0.00 0.00 0.00 3.16
438 439 5.104693 TGGGTGTAATGGGTAGTATCACAAG 60.105 44.000 0.00 0.00 0.00 3.16
439 440 4.783763 TGGGTGTAATGGGTAGTATCACAA 59.216 41.667 0.00 0.00 0.00 3.33
440 441 4.363573 TGGGTGTAATGGGTAGTATCACA 58.636 43.478 0.00 0.00 0.00 3.58
441 442 4.742743 GCTGGGTGTAATGGGTAGTATCAC 60.743 50.000 0.00 0.00 0.00 3.06
442 443 3.389983 GCTGGGTGTAATGGGTAGTATCA 59.610 47.826 0.00 0.00 0.00 2.15
443 444 3.244457 GGCTGGGTGTAATGGGTAGTATC 60.244 52.174 0.00 0.00 0.00 2.24
444 445 2.709397 GGCTGGGTGTAATGGGTAGTAT 59.291 50.000 0.00 0.00 0.00 2.12
445 446 2.121129 GGCTGGGTGTAATGGGTAGTA 58.879 52.381 0.00 0.00 0.00 1.82
446 447 0.916809 GGCTGGGTGTAATGGGTAGT 59.083 55.000 0.00 0.00 0.00 2.73
447 448 1.213296 AGGCTGGGTGTAATGGGTAG 58.787 55.000 0.00 0.00 0.00 3.18
448 449 1.676248 AAGGCTGGGTGTAATGGGTA 58.324 50.000 0.00 0.00 0.00 3.69
449 450 1.676248 TAAGGCTGGGTGTAATGGGT 58.324 50.000 0.00 0.00 0.00 4.51
450 451 3.244911 CCTATAAGGCTGGGTGTAATGGG 60.245 52.174 0.00 0.00 0.00 4.00
451 452 3.244911 CCCTATAAGGCTGGGTGTAATGG 60.245 52.174 0.00 0.00 36.32 3.16
452 453 4.021102 CCCTATAAGGCTGGGTGTAATG 57.979 50.000 0.00 0.00 36.32 1.90
464 465 4.025040 TCTTGATGCATGCCCTATAAGG 57.975 45.455 16.68 0.00 34.30 2.69
465 466 5.475909 ACATTCTTGATGCATGCCCTATAAG 59.524 40.000 16.68 12.21 39.47 1.73
466 467 5.242171 CACATTCTTGATGCATGCCCTATAA 59.758 40.000 16.68 3.09 39.47 0.98
467 468 4.763279 CACATTCTTGATGCATGCCCTATA 59.237 41.667 16.68 0.00 39.47 1.31
468 469 3.572682 CACATTCTTGATGCATGCCCTAT 59.427 43.478 16.68 1.15 39.47 2.57
469 470 2.953648 CACATTCTTGATGCATGCCCTA 59.046 45.455 16.68 3.23 39.47 3.53
470 471 1.754803 CACATTCTTGATGCATGCCCT 59.245 47.619 16.68 1.69 39.47 5.19
471 472 1.202486 CCACATTCTTGATGCATGCCC 60.202 52.381 16.68 7.77 39.47 5.36
472 473 1.479323 ACCACATTCTTGATGCATGCC 59.521 47.619 16.68 0.28 39.47 4.40
473 474 2.927477 CAACCACATTCTTGATGCATGC 59.073 45.455 11.82 11.82 39.47 4.06
474 475 4.157105 TCTCAACCACATTCTTGATGCATG 59.843 41.667 2.46 0.00 39.47 4.06
475 476 4.338012 TCTCAACCACATTCTTGATGCAT 58.662 39.130 0.00 0.00 39.47 3.96
476 477 3.753815 TCTCAACCACATTCTTGATGCA 58.246 40.909 0.00 0.00 39.47 3.96
477 478 4.439700 CCATCTCAACCACATTCTTGATGC 60.440 45.833 0.00 0.00 39.47 3.91
478 479 4.703575 ACCATCTCAACCACATTCTTGATG 59.296 41.667 0.00 0.00 41.71 3.07
479 480 4.927049 ACCATCTCAACCACATTCTTGAT 58.073 39.130 0.00 0.00 0.00 2.57
480 481 4.371624 ACCATCTCAACCACATTCTTGA 57.628 40.909 0.00 0.00 0.00 3.02
481 482 5.124457 CCTAACCATCTCAACCACATTCTTG 59.876 44.000 0.00 0.00 0.00 3.02
482 483 5.222130 ACCTAACCATCTCAACCACATTCTT 60.222 40.000 0.00 0.00 0.00 2.52
483 484 4.289672 ACCTAACCATCTCAACCACATTCT 59.710 41.667 0.00 0.00 0.00 2.40
484 485 4.396166 CACCTAACCATCTCAACCACATTC 59.604 45.833 0.00 0.00 0.00 2.67
485 486 4.335416 CACCTAACCATCTCAACCACATT 58.665 43.478 0.00 0.00 0.00 2.71
486 487 3.308402 CCACCTAACCATCTCAACCACAT 60.308 47.826 0.00 0.00 0.00 3.21
487 488 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
488 489 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
489 490 2.626785 TCCACCTAACCATCTCAACCA 58.373 47.619 0.00 0.00 0.00 3.67
490 491 3.933861 ATCCACCTAACCATCTCAACC 57.066 47.619 0.00 0.00 0.00 3.77
491 492 5.360591 CACTATCCACCTAACCATCTCAAC 58.639 45.833 0.00 0.00 0.00 3.18
492 493 4.408921 CCACTATCCACCTAACCATCTCAA 59.591 45.833 0.00 0.00 0.00 3.02
493 494 3.967326 CCACTATCCACCTAACCATCTCA 59.033 47.826 0.00 0.00 0.00 3.27
494 495 3.967987 ACCACTATCCACCTAACCATCTC 59.032 47.826 0.00 0.00 0.00 2.75
495 496 4.008916 ACCACTATCCACCTAACCATCT 57.991 45.455 0.00 0.00 0.00 2.90
496 497 5.046520 GGATACCACTATCCACCTAACCATC 60.047 48.000 2.40 0.00 45.82 3.51
497 498 4.844655 GGATACCACTATCCACCTAACCAT 59.155 45.833 2.40 0.00 45.82 3.55
498 499 4.228824 GGATACCACTATCCACCTAACCA 58.771 47.826 2.40 0.00 45.82 3.67
499 500 4.886496 GGATACCACTATCCACCTAACC 57.114 50.000 2.40 0.00 45.82 2.85
515 516 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
516 517 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
526 527 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
531 532 2.814097 CGAACACCAGGATTTGAACCCT 60.814 50.000 0.00 0.00 0.00 4.34
532 533 1.539827 CGAACACCAGGATTTGAACCC 59.460 52.381 0.00 0.00 0.00 4.11
533 534 1.068541 GCGAACACCAGGATTTGAACC 60.069 52.381 0.00 0.00 0.00 3.62
534 535 1.606668 TGCGAACACCAGGATTTGAAC 59.393 47.619 0.00 0.00 0.00 3.18
535 536 1.974265 TGCGAACACCAGGATTTGAA 58.026 45.000 0.00 0.00 0.00 2.69
536 537 2.198827 ATGCGAACACCAGGATTTGA 57.801 45.000 0.00 0.00 0.00 2.69
537 538 4.637483 ATAATGCGAACACCAGGATTTG 57.363 40.909 0.00 0.00 31.11 2.32
538 539 4.097892 GGAATAATGCGAACACCAGGATTT 59.902 41.667 0.00 0.00 31.11 2.17
539 540 3.632145 GGAATAATGCGAACACCAGGATT 59.368 43.478 0.00 0.00 33.17 3.01
540 541 3.117888 AGGAATAATGCGAACACCAGGAT 60.118 43.478 0.00 0.00 0.00 3.24
541 542 2.238646 AGGAATAATGCGAACACCAGGA 59.761 45.455 0.00 0.00 0.00 3.86
542 543 2.355756 CAGGAATAATGCGAACACCAGG 59.644 50.000 0.00 0.00 0.00 4.45
543 544 2.355756 CCAGGAATAATGCGAACACCAG 59.644 50.000 0.00 0.00 0.00 4.00
544 545 2.026729 TCCAGGAATAATGCGAACACCA 60.027 45.455 0.00 0.00 0.00 4.17
545 546 2.639065 TCCAGGAATAATGCGAACACC 58.361 47.619 0.00 0.00 0.00 4.16
546 547 4.900635 AATCCAGGAATAATGCGAACAC 57.099 40.909 0.00 0.00 0.00 3.32
547 548 7.581213 AATAAATCCAGGAATAATGCGAACA 57.419 32.000 0.00 0.00 0.00 3.18
548 549 8.871686 AAAATAAATCCAGGAATAATGCGAAC 57.128 30.769 0.00 0.00 0.00 3.95
550 551 8.792633 CCTAAAATAAATCCAGGAATAATGCGA 58.207 33.333 0.00 0.00 0.00 5.10
551 552 8.792633 TCCTAAAATAAATCCAGGAATAATGCG 58.207 33.333 0.00 0.00 32.49 4.73
557 558 8.860088 CGGAAATCCTAAAATAAATCCAGGAAT 58.140 33.333 0.00 0.00 38.82 3.01
558 559 7.286775 CCGGAAATCCTAAAATAAATCCAGGAA 59.713 37.037 0.00 0.00 38.82 3.36
559 560 6.775629 CCGGAAATCCTAAAATAAATCCAGGA 59.224 38.462 0.00 0.00 39.63 3.86
560 561 6.516693 GCCGGAAATCCTAAAATAAATCCAGG 60.517 42.308 5.05 0.00 0.00 4.45
561 562 6.447162 GCCGGAAATCCTAAAATAAATCCAG 58.553 40.000 5.05 0.00 0.00 3.86
562 563 5.009210 CGCCGGAAATCCTAAAATAAATCCA 59.991 40.000 5.05 0.00 0.00 3.41
563 564 5.239963 TCGCCGGAAATCCTAAAATAAATCC 59.760 40.000 5.05 0.00 0.00 3.01
564 565 6.308371 TCGCCGGAAATCCTAAAATAAATC 57.692 37.500 5.05 0.00 0.00 2.17
565 566 6.677913 CATCGCCGGAAATCCTAAAATAAAT 58.322 36.000 5.05 0.00 0.00 1.40
566 567 5.506649 GCATCGCCGGAAATCCTAAAATAAA 60.507 40.000 5.05 0.00 0.00 1.40
567 568 4.023536 GCATCGCCGGAAATCCTAAAATAA 60.024 41.667 5.05 0.00 0.00 1.40
568 569 3.500680 GCATCGCCGGAAATCCTAAAATA 59.499 43.478 5.05 0.00 0.00 1.40
569 570 2.293399 GCATCGCCGGAAATCCTAAAAT 59.707 45.455 5.05 0.00 0.00 1.82
570 571 1.673920 GCATCGCCGGAAATCCTAAAA 59.326 47.619 5.05 0.00 0.00 1.52
571 572 1.305201 GCATCGCCGGAAATCCTAAA 58.695 50.000 5.05 0.00 0.00 1.85
572 573 0.179234 TGCATCGCCGGAAATCCTAA 59.821 50.000 5.05 0.00 0.00 2.69
573 574 0.531974 GTGCATCGCCGGAAATCCTA 60.532 55.000 5.05 0.00 0.00 2.94
574 575 1.819632 GTGCATCGCCGGAAATCCT 60.820 57.895 5.05 0.00 0.00 3.24
575 576 1.376609 AAGTGCATCGCCGGAAATCC 61.377 55.000 5.05 0.00 0.00 3.01
576 577 0.451783 AAAGTGCATCGCCGGAAATC 59.548 50.000 5.05 0.00 0.00 2.17
577 578 0.451783 GAAAGTGCATCGCCGGAAAT 59.548 50.000 5.05 0.00 0.00 2.17
578 579 0.886938 TGAAAGTGCATCGCCGGAAA 60.887 50.000 5.05 0.00 0.00 3.13
579 580 1.298157 CTGAAAGTGCATCGCCGGAA 61.298 55.000 5.05 0.00 0.00 4.30
580 581 1.741401 CTGAAAGTGCATCGCCGGA 60.741 57.895 5.05 0.00 0.00 5.14
581 582 2.787249 CTGAAAGTGCATCGCCGG 59.213 61.111 0.00 0.00 0.00 6.13
592 593 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
593 594 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
594 595 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
595 596 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
596 597 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
597 598 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
610 611 1.731969 CCTTGTCGTCGACGGGAAC 60.732 63.158 35.05 26.09 40.29 3.62
611 612 2.646719 CCTTGTCGTCGACGGGAA 59.353 61.111 35.05 25.26 40.29 3.97
612 613 4.047059 GCCTTGTCGTCGACGGGA 62.047 66.667 35.05 20.33 40.29 5.14
616 617 2.609183 ATAGGCGCCTTGTCGTCGAC 62.609 60.000 37.74 18.51 39.34 4.20
617 618 2.412323 ATAGGCGCCTTGTCGTCGA 61.412 57.895 37.74 15.04 39.34 4.20
618 619 2.104331 ATAGGCGCCTTGTCGTCG 59.896 61.111 37.74 0.00 39.34 5.12
619 620 1.883084 CCATAGGCGCCTTGTCGTC 60.883 63.158 37.74 0.00 0.00 4.20
620 621 2.186903 CCATAGGCGCCTTGTCGT 59.813 61.111 37.74 12.35 0.00 4.34
621 622 2.173669 CACCATAGGCGCCTTGTCG 61.174 63.158 37.74 21.45 0.00 4.35
622 623 1.819632 CCACCATAGGCGCCTTGTC 60.820 63.158 37.74 2.51 0.00 3.18
623 624 2.272146 CCACCATAGGCGCCTTGT 59.728 61.111 37.74 25.72 0.00 3.16
624 625 3.211963 GCCACCATAGGCGCCTTG 61.212 66.667 37.74 28.92 46.12 3.61
631 632 4.451900 AGATTTACGAAAGCCACCATAGG 58.548 43.478 0.00 0.00 0.00 2.57
632 633 4.209288 CGAGATTTACGAAAGCCACCATAG 59.791 45.833 0.00 0.00 0.00 2.23
633 634 4.116961 CGAGATTTACGAAAGCCACCATA 58.883 43.478 0.00 0.00 0.00 2.74
634 635 2.936498 CGAGATTTACGAAAGCCACCAT 59.064 45.455 0.00 0.00 0.00 3.55
635 636 2.343101 CGAGATTTACGAAAGCCACCA 58.657 47.619 0.00 0.00 0.00 4.17
636 637 1.664151 CCGAGATTTACGAAAGCCACC 59.336 52.381 0.00 0.00 0.00 4.61
637 638 1.664151 CCCGAGATTTACGAAAGCCAC 59.336 52.381 0.00 0.00 0.00 5.01
638 639 1.406341 CCCCGAGATTTACGAAAGCCA 60.406 52.381 0.00 0.00 0.00 4.75
639 640 1.296727 CCCCGAGATTTACGAAAGCC 58.703 55.000 0.00 0.00 0.00 4.35
640 641 2.019948 ACCCCGAGATTTACGAAAGC 57.980 50.000 0.00 0.00 0.00 3.51
641 642 3.492137 CCCTACCCCGAGATTTACGAAAG 60.492 52.174 0.00 0.00 0.00 2.62
642 643 2.431782 CCCTACCCCGAGATTTACGAAA 59.568 50.000 0.00 0.00 0.00 3.46
643 644 2.034124 CCCTACCCCGAGATTTACGAA 58.966 52.381 0.00 0.00 0.00 3.85
644 645 1.063717 ACCCTACCCCGAGATTTACGA 60.064 52.381 0.00 0.00 0.00 3.43
645 646 1.068127 CACCCTACCCCGAGATTTACG 59.932 57.143 0.00 0.00 0.00 3.18
646 647 2.113807 ACACCCTACCCCGAGATTTAC 58.886 52.381 0.00 0.00 0.00 2.01
647 648 2.555732 ACACCCTACCCCGAGATTTA 57.444 50.000 0.00 0.00 0.00 1.40
648 649 2.113807 GTACACCCTACCCCGAGATTT 58.886 52.381 0.00 0.00 0.00 2.17
649 650 1.785647 GTACACCCTACCCCGAGATT 58.214 55.000 0.00 0.00 0.00 2.40
650 651 0.466922 CGTACACCCTACCCCGAGAT 60.467 60.000 0.00 0.00 0.00 2.75
651 652 1.077501 CGTACACCCTACCCCGAGA 60.078 63.158 0.00 0.00 0.00 4.04
652 653 1.379044 ACGTACACCCTACCCCGAG 60.379 63.158 0.00 0.00 0.00 4.63
653 654 1.678635 CACGTACACCCTACCCCGA 60.679 63.158 0.00 0.00 0.00 5.14
654 655 1.978617 ACACGTACACCCTACCCCG 60.979 63.158 0.00 0.00 0.00 5.73
655 656 1.187567 ACACACGTACACCCTACCCC 61.188 60.000 0.00 0.00 0.00 4.95
656 657 0.037975 CACACACGTACACCCTACCC 60.038 60.000 0.00 0.00 0.00 3.69
657 658 0.675633 ACACACACGTACACCCTACC 59.324 55.000 0.00 0.00 0.00 3.18
658 659 2.514205 AACACACACGTACACCCTAC 57.486 50.000 0.00 0.00 0.00 3.18
659 660 2.429971 TGAAACACACACGTACACCCTA 59.570 45.455 0.00 0.00 0.00 3.53
660 661 1.207570 TGAAACACACACGTACACCCT 59.792 47.619 0.00 0.00 0.00 4.34
661 662 1.654317 TGAAACACACACGTACACCC 58.346 50.000 0.00 0.00 0.00 4.61
662 663 4.300803 TCTATGAAACACACACGTACACC 58.699 43.478 0.00 0.00 0.00 4.16
663 664 5.217393 TCTCTATGAAACACACACGTACAC 58.783 41.667 0.00 0.00 0.00 2.90
664 665 5.441709 TCTCTATGAAACACACACGTACA 57.558 39.130 0.00 0.00 0.00 2.90
665 666 6.090783 TCATCTCTATGAAACACACACGTAC 58.909 40.000 0.00 0.00 39.20 3.67
666 667 6.072119 ACTCATCTCTATGAAACACACACGTA 60.072 38.462 0.00 0.00 41.57 3.57
667 668 5.134202 TCATCTCTATGAAACACACACGT 57.866 39.130 0.00 0.00 39.20 4.49
668 669 5.061435 CACTCATCTCTATGAAACACACACG 59.939 44.000 0.00 0.00 41.57 4.49
669 670 5.928839 ACACTCATCTCTATGAAACACACAC 59.071 40.000 0.00 0.00 41.57 3.82
670 671 6.101650 ACACTCATCTCTATGAAACACACA 57.898 37.500 0.00 0.00 41.57 3.72
671 672 7.254252 GCATACACTCATCTCTATGAAACACAC 60.254 40.741 0.00 0.00 41.57 3.82
672 673 6.758416 GCATACACTCATCTCTATGAAACACA 59.242 38.462 0.00 0.00 41.57 3.72
673 674 6.074623 CGCATACACTCATCTCTATGAAACAC 60.075 42.308 0.00 0.00 41.57 3.32
674 675 5.979517 CGCATACACTCATCTCTATGAAACA 59.020 40.000 0.00 0.00 41.57 2.83
675 676 5.107683 GCGCATACACTCATCTCTATGAAAC 60.108 44.000 0.30 0.00 41.57 2.78
676 677 4.984785 GCGCATACACTCATCTCTATGAAA 59.015 41.667 0.30 0.00 41.57 2.69
677 678 4.550422 GCGCATACACTCATCTCTATGAA 58.450 43.478 0.30 0.00 41.57 2.57
678 679 3.365364 CGCGCATACACTCATCTCTATGA 60.365 47.826 8.75 0.00 39.87 2.15
679 680 2.913590 CGCGCATACACTCATCTCTATG 59.086 50.000 8.75 0.00 0.00 2.23
680 681 2.554462 ACGCGCATACACTCATCTCTAT 59.446 45.455 5.73 0.00 0.00 1.98
681 682 1.947456 ACGCGCATACACTCATCTCTA 59.053 47.619 5.73 0.00 0.00 2.43
682 683 0.741326 ACGCGCATACACTCATCTCT 59.259 50.000 5.73 0.00 0.00 3.10
683 684 2.401017 TACGCGCATACACTCATCTC 57.599 50.000 5.73 0.00 0.00 2.75
684 685 4.703645 ATATACGCGCATACACTCATCT 57.296 40.909 5.73 0.00 0.00 2.90
685 686 6.199393 TCATATATACGCGCATACACTCATC 58.801 40.000 5.73 0.00 0.00 2.92
686 687 6.131544 TCATATATACGCGCATACACTCAT 57.868 37.500 5.73 0.00 0.00 2.90
687 688 5.554822 TCATATATACGCGCATACACTCA 57.445 39.130 5.73 0.00 0.00 3.41
688 689 4.438145 GCTCATATATACGCGCATACACTC 59.562 45.833 5.73 0.00 0.00 3.51
689 690 4.352039 GCTCATATATACGCGCATACACT 58.648 43.478 5.73 0.00 0.00 3.55
690 691 3.177838 CGCTCATATATACGCGCATACAC 59.822 47.826 5.73 0.00 39.11 2.90
691 692 3.359654 CGCTCATATATACGCGCATACA 58.640 45.455 5.73 0.00 39.11 2.29
699 700 4.322009 CAGACACAAGCGCTCATATATACG 59.678 45.833 12.06 0.00 0.00 3.06
700 701 5.223382 ACAGACACAAGCGCTCATATATAC 58.777 41.667 12.06 0.00 0.00 1.47
701 702 5.453567 ACAGACACAAGCGCTCATATATA 57.546 39.130 12.06 0.00 0.00 0.86
702 703 4.327982 ACAGACACAAGCGCTCATATAT 57.672 40.909 12.06 0.00 0.00 0.86
703 704 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
704 705 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
705 706 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
706 707 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
707 708 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
708 709 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
709 710 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
710 711 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
711 712 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
712 713 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
713 714 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
737 738 6.239008 CCCTTGATGCATACCGATACATTTTT 60.239 38.462 0.00 0.00 0.00 1.94
738 739 5.241506 CCCTTGATGCATACCGATACATTTT 59.758 40.000 0.00 0.00 0.00 1.82
739 740 4.761739 CCCTTGATGCATACCGATACATTT 59.238 41.667 0.00 0.00 0.00 2.32
841 842 6.018425 GTCGAATACACAGACGGAGATAACTA 60.018 42.308 0.00 0.00 0.00 2.24
916 919 3.252215 GGTCAGATACTCAGATCAGTCGG 59.748 52.174 0.00 0.00 0.00 4.79
944 947 4.640771 ATCAGTGAGGTTTGGAAGCTTA 57.359 40.909 0.00 0.00 39.77 3.09
984 994 1.444895 CATGGCTGCTGGTTTTCGC 60.445 57.895 0.00 0.00 0.00 4.70
986 996 0.529378 CCTCATGGCTGCTGGTTTTC 59.471 55.000 0.00 0.00 0.00 2.29
987 997 0.112995 TCCTCATGGCTGCTGGTTTT 59.887 50.000 0.00 0.00 0.00 2.43
1145 1163 2.743928 CCTGCTTCACGTGCTCCC 60.744 66.667 11.67 0.00 0.00 4.30
1218 1236 1.597461 GAGCCGGTAGTTGAAGCCT 59.403 57.895 1.90 0.00 0.00 4.58
1256 1274 4.735132 CGTCCTTCTTGCCGGCGA 62.735 66.667 23.90 20.69 0.00 5.54
1314 1332 1.807573 GAAGGAGACGAGCTTGCGG 60.808 63.158 0.00 0.00 35.12 5.69
1368 1386 6.415867 GCGATGTCCATCAAGAATTACAAATG 59.584 38.462 7.94 0.00 37.69 2.32
1500 1522 6.084326 TCCACCAGTTAGCTCAAAATTTTC 57.916 37.500 0.00 0.00 0.00 2.29
1505 1542 4.693566 CGTATTCCACCAGTTAGCTCAAAA 59.306 41.667 0.00 0.00 0.00 2.44
1525 1562 8.951787 AAAATGTAGTATAAGGCATTCACGTA 57.048 30.769 0.00 0.00 31.95 3.57
1527 1564 7.915508 TGAAAATGTAGTATAAGGCATTCACG 58.084 34.615 0.00 0.00 31.95 4.35
1531 1568 8.952278 TCGTTTGAAAATGTAGTATAAGGCATT 58.048 29.630 0.00 0.00 33.55 3.56
1702 2072 5.163683 CCTGTTCTGCAAAACCATCTCATAG 60.164 44.000 0.00 0.00 0.00 2.23
1904 2274 0.469331 CAGGCCAGGCAATGATGGAT 60.469 55.000 15.19 0.00 39.02 3.41
2219 2590 4.498682 GCAATAGCATTGTCTCCAATCACC 60.499 45.833 9.58 0.00 39.28 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.