Multiple sequence alignment - TraesCS4D01G251300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G251300 chr4D 100.000 3015 0 0 1 3015 419437959 419440973 0.000000e+00 5568.0
1 TraesCS4D01G251300 chr4D 95.195 1540 42 5 848 2356 475025011 475026549 0.000000e+00 2405.0
2 TraesCS4D01G251300 chr4D 97.244 508 9 1 2103 2605 475027039 475027546 0.000000e+00 856.0
3 TraesCS4D01G251300 chr4D 100.000 329 0 0 3252 3580 419441210 419441538 3.060000e-170 608.0
4 TraesCS4D01G251300 chr4D 97.509 281 7 0 3300 3580 475026756 475027036 6.950000e-132 481.0
5 TraesCS4D01G251300 chr4D 95.436 241 9 1 3340 3580 475040342 475040580 2.020000e-102 383.0
6 TraesCS4D01G251300 chr4D 86.364 154 21 0 1648 1801 419439495 419439648 6.150000e-38 169.0
7 TraesCS4D01G251300 chr4D 86.364 154 21 0 1537 1690 419439606 419439759 6.150000e-38 169.0
8 TraesCS4D01G251300 chr4D 83.544 158 26 0 1644 1801 475025706 475025863 8.010000e-32 148.0
9 TraesCS4D01G251300 chr3D 93.839 1753 76 11 882 2605 597456902 597455153 0.000000e+00 2610.0
10 TraesCS4D01G251300 chr3D 87.775 409 44 6 1696 2104 286762186 286761784 1.160000e-129 473.0
11 TraesCS4D01G251300 chr3D 91.503 306 20 5 3279 3580 597450443 597450140 1.990000e-112 416.0
12 TraesCS4D01G251300 chr3D 89.098 266 28 1 1425 1690 286762346 286762082 2.660000e-86 329.0
13 TraesCS4D01G251300 chr3D 93.162 117 8 0 1685 1801 597456211 597456095 4.750000e-39 172.0
14 TraesCS4D01G251300 chr3D 86.755 151 20 0 1540 1690 597456134 597455984 6.150000e-38 169.0
15 TraesCS4D01G251300 chr5A 85.903 986 102 17 1651 2604 414052561 414051581 0.000000e+00 1016.0
16 TraesCS4D01G251300 chr5A 86.369 873 93 9 848 1696 414053275 414052405 0.000000e+00 929.0
17 TraesCS4D01G251300 chr5A 92.602 392 27 2 2610 3000 414010084 414009694 2.410000e-156 562.0
18 TraesCS4D01G251300 chr5A 90.120 334 27 2 3252 3580 414009604 414009272 2.550000e-116 429.0
19 TraesCS4D01G251300 chr5A 83.221 298 40 5 2712 3000 603364478 603364182 7.620000e-67 265.0
20 TraesCS4D01G251300 chr5A 82.828 297 41 5 2713 3000 3318927 3318632 1.280000e-64 257.0
21 TraesCS4D01G251300 chr7D 82.635 812 107 20 1820 2605 220293167 220292364 0.000000e+00 688.0
22 TraesCS4D01G251300 chr7D 84.879 701 80 13 882 1565 220293934 220293243 0.000000e+00 684.0
23 TraesCS4D01G251300 chr7D 89.552 67 7 0 1612 1678 220293242 220293176 6.370000e-13 86.1
24 TraesCS4D01G251300 chr6A 82.749 742 96 23 1696 2412 155792141 155792875 1.810000e-177 632.0
25 TraesCS4D01G251300 chr6A 85.185 594 75 4 1097 1690 155791666 155792246 6.620000e-167 597.0
26 TraesCS4D01G251300 chr4A 91.358 405 19 5 427 824 45116770 45116375 1.130000e-149 540.0
27 TraesCS4D01G251300 chr4A 91.429 175 7 3 198 372 45129979 45129813 2.150000e-57 233.0
28 TraesCS4D01G251300 chr4B 93.294 343 21 2 506 847 517559205 517559546 4.120000e-139 505.0
29 TraesCS4D01G251300 chr4B 92.118 203 14 1 314 514 517558845 517559047 5.850000e-73 285.0
30 TraesCS4D01G251300 chr7A 86.000 400 42 9 2611 3000 89848453 89848058 1.990000e-112 416.0
31 TraesCS4D01G251300 chr2A 88.060 268 28 3 2634 2899 755779432 755779697 7.460000e-82 315.0
32 TraesCS4D01G251300 chr7B 81.794 379 56 10 2626 2996 655574632 655575005 4.490000e-79 305.0
33 TraesCS4D01G251300 chr7B 92.727 55 4 0 2946 3000 658620832 658620886 2.960000e-11 80.5
34 TraesCS4D01G251300 chr7B 92.727 55 4 0 2946 3000 658731146 658731200 2.960000e-11 80.5
35 TraesCS4D01G251300 chr7B 90.909 55 5 0 2946 3000 658745824 658745878 1.380000e-09 75.0
36 TraesCS4D01G251300 chrUn 94.231 52 3 0 2952 3003 336505830 336505779 2.960000e-11 80.5
37 TraesCS4D01G251300 chrUn 94.231 52 3 0 2952 3003 354102428 354102377 2.960000e-11 80.5
38 TraesCS4D01G251300 chrUn 92.727 55 4 0 2946 3000 475470824 475470878 2.960000e-11 80.5
39 TraesCS4D01G251300 chr2B 92.308 52 4 0 2952 3003 751939127 751939076 1.380000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G251300 chr4D 419437959 419441538 3579 False 1628.500000 5568 93.182000 1 3580 4 chr4D.!!$F2 3579
1 TraesCS4D01G251300 chr4D 475025011 475027546 2535 False 972.500000 2405 93.373000 848 3580 4 chr4D.!!$F3 2732
2 TraesCS4D01G251300 chr3D 597455153 597456902 1749 True 983.666667 2610 91.252000 882 2605 3 chr3D.!!$R3 1723
3 TraesCS4D01G251300 chr3D 286761784 286762346 562 True 401.000000 473 88.436500 1425 2104 2 chr3D.!!$R2 679
4 TraesCS4D01G251300 chr5A 414051581 414053275 1694 True 972.500000 1016 86.136000 848 2604 2 chr5A.!!$R4 1756
5 TraesCS4D01G251300 chr5A 414009272 414010084 812 True 495.500000 562 91.361000 2610 3580 2 chr5A.!!$R3 970
6 TraesCS4D01G251300 chr7D 220292364 220293934 1570 True 486.033333 688 85.688667 882 2605 3 chr7D.!!$R1 1723
7 TraesCS4D01G251300 chr6A 155791666 155792875 1209 False 614.500000 632 83.967000 1097 2412 2 chr6A.!!$F1 1315
8 TraesCS4D01G251300 chr4B 517558845 517559546 701 False 395.000000 505 92.706000 314 847 2 chr4B.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.108138 CCACTCCCTCCGTCATTGAC 60.108 60.0 6.73 6.73 0.00 3.18 F
139 140 0.108186 CCATGCTGCCTTGTCGTAGA 60.108 55.0 0.00 0.00 0.00 2.59 F
304 305 0.248621 GTCTGCTGCAACAACGCTTT 60.249 50.0 3.02 0.00 0.00 3.51 F
433 436 0.376152 GAGATGCTCCAACATGCACG 59.624 55.0 0.00 0.00 42.26 5.34 F
808 978 0.540365 ATGGGCAGTTGGTGACTTGG 60.540 55.0 0.00 0.00 36.10 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 1853 1.026718 GCCCCCTGAACTGAATGTCG 61.027 60.000 0.00 0.0 0.00 4.35 R
1901 2211 2.352388 GTAATGTACCTGCGCTTCCAA 58.648 47.619 9.73 0.0 0.00 3.53 R
1978 2289 7.602517 AAACTAATGAAACTTCCTCTCATCG 57.397 36.000 0.00 0.0 0.00 3.84 R
2347 3430 3.432186 CCGGCAGGATTGATTCAGACTTA 60.432 47.826 0.00 0.0 41.02 2.24 R
2793 3882 0.033504 ACGCGTTCTTCATCACAGGT 59.966 50.000 5.58 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.351054 CACCGCCTCCCCTTTGCT 62.351 66.667 0.00 0.00 0.00 3.91
20 21 4.351054 ACCGCCTCCCCTTTGCTG 62.351 66.667 0.00 0.00 0.00 4.41
23 24 2.363406 GCCTCCCCTTTGCTGCAT 60.363 61.111 1.84 0.00 0.00 3.96
24 25 2.718073 GCCTCCCCTTTGCTGCATG 61.718 63.158 1.84 0.00 0.00 4.06
25 26 2.718073 CCTCCCCTTTGCTGCATGC 61.718 63.158 11.82 11.82 43.25 4.06
26 27 3.060020 CTCCCCTTTGCTGCATGCG 62.060 63.158 14.09 9.16 46.63 4.73
27 28 4.137872 CCCCTTTGCTGCATGCGG 62.138 66.667 22.66 22.66 46.63 5.69
28 29 4.807039 CCCTTTGCTGCATGCGGC 62.807 66.667 38.80 38.80 46.63 6.53
49 50 3.461773 CGCCACTCCCTCCGTCAT 61.462 66.667 0.00 0.00 0.00 3.06
50 51 2.990479 GCCACTCCCTCCGTCATT 59.010 61.111 0.00 0.00 0.00 2.57
51 52 1.450312 GCCACTCCCTCCGTCATTG 60.450 63.158 0.00 0.00 0.00 2.82
52 53 1.899437 GCCACTCCCTCCGTCATTGA 61.899 60.000 0.00 0.00 0.00 2.57
53 54 0.108138 CCACTCCCTCCGTCATTGAC 60.108 60.000 6.73 6.73 0.00 3.18
54 55 0.608130 CACTCCCTCCGTCATTGACA 59.392 55.000 16.61 0.00 32.09 3.58
55 56 1.001974 CACTCCCTCCGTCATTGACAA 59.998 52.381 16.61 3.50 32.09 3.18
56 57 1.909302 ACTCCCTCCGTCATTGACAAT 59.091 47.619 16.61 0.00 32.09 2.71
57 58 2.093447 ACTCCCTCCGTCATTGACAATC 60.093 50.000 16.61 0.00 32.09 2.67
58 59 1.905894 TCCCTCCGTCATTGACAATCA 59.094 47.619 16.61 0.00 32.09 2.57
59 60 2.009774 CCCTCCGTCATTGACAATCAC 58.990 52.381 16.61 0.00 32.09 3.06
60 61 2.615240 CCCTCCGTCATTGACAATCACA 60.615 50.000 16.61 0.00 32.09 3.58
61 62 3.273434 CCTCCGTCATTGACAATCACAT 58.727 45.455 16.61 0.00 32.09 3.21
62 63 3.310774 CCTCCGTCATTGACAATCACATC 59.689 47.826 16.61 0.00 32.09 3.06
63 64 2.929398 TCCGTCATTGACAATCACATCG 59.071 45.455 16.61 0.00 32.09 3.84
64 65 2.672874 CCGTCATTGACAATCACATCGT 59.327 45.455 16.61 0.00 32.09 3.73
65 66 3.242091 CCGTCATTGACAATCACATCGTC 60.242 47.826 16.61 0.00 32.09 4.20
66 67 3.540167 CGTCATTGACAATCACATCGTCG 60.540 47.826 16.61 0.00 32.09 5.12
67 68 3.367932 GTCATTGACAATCACATCGTCGT 59.632 43.478 11.93 0.00 32.09 4.34
68 69 3.612423 TCATTGACAATCACATCGTCGTC 59.388 43.478 0.00 0.00 32.17 4.20
69 70 2.715737 TGACAATCACATCGTCGTCA 57.284 45.000 0.00 0.00 32.17 4.35
70 71 2.324860 TGACAATCACATCGTCGTCAC 58.675 47.619 0.00 0.00 32.17 3.67
71 72 1.654105 GACAATCACATCGTCGTCACC 59.346 52.381 0.00 0.00 0.00 4.02
72 73 0.640262 CAATCACATCGTCGTCACCG 59.360 55.000 0.00 0.00 0.00 4.94
73 74 0.242825 AATCACATCGTCGTCACCGT 59.757 50.000 0.00 0.00 35.01 4.83
74 75 0.179171 ATCACATCGTCGTCACCGTC 60.179 55.000 0.00 0.00 35.01 4.79
75 76 2.144069 CACATCGTCGTCACCGTCG 61.144 63.158 0.00 0.00 44.86 5.12
76 77 2.175078 CATCGTCGTCACCGTCGT 59.825 61.111 0.00 0.00 44.09 4.34
77 78 1.441515 CATCGTCGTCACCGTCGTT 60.442 57.895 0.00 0.00 44.09 3.85
78 79 1.441515 ATCGTCGTCACCGTCGTTG 60.442 57.895 0.00 0.00 44.09 4.10
79 80 3.749373 CGTCGTCACCGTCGTTGC 61.749 66.667 0.00 0.00 40.01 4.17
80 81 3.400590 GTCGTCACCGTCGTTGCC 61.401 66.667 0.00 0.00 35.01 4.52
81 82 4.986587 TCGTCACCGTCGTTGCCG 62.987 66.667 0.00 0.00 35.01 5.69
84 85 4.673298 TCACCGTCGTTGCCGCAT 62.673 61.111 0.00 0.00 0.00 4.73
85 86 3.722295 CACCGTCGTTGCCGCATT 61.722 61.111 0.00 0.00 0.00 3.56
86 87 3.722295 ACCGTCGTTGCCGCATTG 61.722 61.111 0.00 0.00 0.00 2.82
87 88 3.722295 CCGTCGTTGCCGCATTGT 61.722 61.111 0.00 0.00 0.00 2.71
88 89 2.384309 CCGTCGTTGCCGCATTGTA 61.384 57.895 0.00 0.00 0.00 2.41
89 90 1.225637 CGTCGTTGCCGCATTGTAC 60.226 57.895 0.00 0.00 0.00 2.90
90 91 1.863491 GTCGTTGCCGCATTGTACA 59.137 52.632 0.00 0.00 0.00 2.90
91 92 0.236187 GTCGTTGCCGCATTGTACAA 59.764 50.000 11.41 11.41 0.00 2.41
92 93 0.236187 TCGTTGCCGCATTGTACAAC 59.764 50.000 11.22 0.00 39.16 3.32
93 94 0.727793 CGTTGCCGCATTGTACAACC 60.728 55.000 11.22 4.25 39.33 3.77
94 95 0.312416 GTTGCCGCATTGTACAACCA 59.688 50.000 11.22 0.85 37.11 3.67
95 96 0.312416 TTGCCGCATTGTACAACCAC 59.688 50.000 11.22 2.37 0.00 4.16
96 97 0.819666 TGCCGCATTGTACAACCACA 60.820 50.000 11.22 2.63 0.00 4.17
97 98 0.386731 GCCGCATTGTACAACCACAC 60.387 55.000 11.22 0.00 0.00 3.82
98 99 0.239879 CCGCATTGTACAACCACACC 59.760 55.000 11.22 0.00 0.00 4.16
99 100 0.110419 CGCATTGTACAACCACACCG 60.110 55.000 11.22 4.00 0.00 4.94
100 101 0.386731 GCATTGTACAACCACACCGC 60.387 55.000 11.22 1.82 0.00 5.68
101 102 0.239879 CATTGTACAACCACACCGCC 59.760 55.000 11.22 0.00 0.00 6.13
102 103 0.891904 ATTGTACAACCACACCGCCC 60.892 55.000 11.22 0.00 0.00 6.13
103 104 3.045492 GTACAACCACACCGCCCG 61.045 66.667 0.00 0.00 0.00 6.13
104 105 3.548484 TACAACCACACCGCCCGT 61.548 61.111 0.00 0.00 0.00 5.28
105 106 3.518419 TACAACCACACCGCCCGTC 62.518 63.158 0.00 0.00 0.00 4.79
127 128 3.740397 CGCCACACCACCATGCTG 61.740 66.667 0.00 0.00 0.00 4.41
128 129 4.060038 GCCACACCACCATGCTGC 62.060 66.667 0.00 0.00 0.00 5.25
129 130 3.376078 CCACACCACCATGCTGCC 61.376 66.667 0.00 0.00 0.00 4.85
130 131 2.282674 CACACCACCATGCTGCCT 60.283 61.111 0.00 0.00 0.00 4.75
131 132 1.904865 CACACCACCATGCTGCCTT 60.905 57.895 0.00 0.00 0.00 4.35
132 133 1.904865 ACACCACCATGCTGCCTTG 60.905 57.895 0.00 0.00 0.00 3.61
133 134 1.904865 CACCACCATGCTGCCTTGT 60.905 57.895 0.00 0.00 0.00 3.16
134 135 1.604593 ACCACCATGCTGCCTTGTC 60.605 57.895 0.00 0.00 0.00 3.18
135 136 2.693762 CCACCATGCTGCCTTGTCG 61.694 63.158 0.00 0.00 0.00 4.35
136 137 1.968017 CACCATGCTGCCTTGTCGT 60.968 57.895 0.00 0.00 0.00 4.34
137 138 0.673333 CACCATGCTGCCTTGTCGTA 60.673 55.000 0.00 0.00 0.00 3.43
138 139 0.391661 ACCATGCTGCCTTGTCGTAG 60.392 55.000 0.00 0.00 0.00 3.51
139 140 0.108186 CCATGCTGCCTTGTCGTAGA 60.108 55.000 0.00 0.00 0.00 2.59
140 141 1.675714 CCATGCTGCCTTGTCGTAGAA 60.676 52.381 0.00 0.00 39.69 2.10
141 142 2.283298 CATGCTGCCTTGTCGTAGAAT 58.717 47.619 0.00 0.00 39.69 2.40
142 143 1.725641 TGCTGCCTTGTCGTAGAATG 58.274 50.000 0.00 0.00 39.69 2.67
143 144 1.001974 TGCTGCCTTGTCGTAGAATGT 59.998 47.619 0.00 0.00 39.69 2.71
144 145 2.076863 GCTGCCTTGTCGTAGAATGTT 58.923 47.619 0.00 0.00 39.69 2.71
145 146 2.159653 GCTGCCTTGTCGTAGAATGTTG 60.160 50.000 0.00 0.00 39.69 3.33
146 147 3.067106 CTGCCTTGTCGTAGAATGTTGT 58.933 45.455 0.00 0.00 39.69 3.32
147 148 3.064207 TGCCTTGTCGTAGAATGTTGTC 58.936 45.455 0.00 0.00 39.69 3.18
148 149 2.092211 GCCTTGTCGTAGAATGTTGTCG 59.908 50.000 0.00 0.00 39.69 4.35
149 150 2.666508 CCTTGTCGTAGAATGTTGTCGG 59.333 50.000 0.00 0.00 39.69 4.79
150 151 3.314553 CTTGTCGTAGAATGTTGTCGGT 58.685 45.455 0.00 0.00 39.69 4.69
151 152 4.478699 CTTGTCGTAGAATGTTGTCGGTA 58.521 43.478 0.00 0.00 39.69 4.02
152 153 4.087510 TGTCGTAGAATGTTGTCGGTAG 57.912 45.455 0.00 0.00 39.69 3.18
153 154 3.119743 TGTCGTAGAATGTTGTCGGTAGG 60.120 47.826 0.00 0.00 39.69 3.18
154 155 3.084039 TCGTAGAATGTTGTCGGTAGGT 58.916 45.455 0.00 0.00 0.00 3.08
155 156 3.127548 TCGTAGAATGTTGTCGGTAGGTC 59.872 47.826 0.00 0.00 0.00 3.85
156 157 2.649331 AGAATGTTGTCGGTAGGTCG 57.351 50.000 0.00 0.00 0.00 4.79
157 158 1.891150 AGAATGTTGTCGGTAGGTCGT 59.109 47.619 0.00 0.00 0.00 4.34
158 159 1.990563 GAATGTTGTCGGTAGGTCGTG 59.009 52.381 0.00 0.00 0.00 4.35
159 160 0.389426 ATGTTGTCGGTAGGTCGTGC 60.389 55.000 0.00 0.00 0.00 5.34
160 161 1.288127 GTTGTCGGTAGGTCGTGCT 59.712 57.895 0.00 0.00 0.00 4.40
161 162 0.523072 GTTGTCGGTAGGTCGTGCTA 59.477 55.000 0.00 0.00 0.00 3.49
162 163 0.806868 TTGTCGGTAGGTCGTGCTAG 59.193 55.000 0.00 0.00 0.00 3.42
163 164 1.063811 GTCGGTAGGTCGTGCTAGC 59.936 63.158 8.10 8.10 0.00 3.42
164 165 2.024305 CGGTAGGTCGTGCTAGCG 59.976 66.667 10.77 0.00 39.91 4.26
165 166 2.278661 GGTAGGTCGTGCTAGCGC 60.279 66.667 18.49 18.49 0.00 5.92
166 167 2.278661 GTAGGTCGTGCTAGCGCC 60.279 66.667 22.09 14.73 34.43 6.53
167 168 3.524606 TAGGTCGTGCTAGCGCCC 61.525 66.667 22.09 17.65 34.43 6.13
173 174 2.587753 GTGCTAGCGCCCGCAATA 60.588 61.111 20.78 0.00 44.88 1.90
174 175 2.587753 TGCTAGCGCCCGCAATAC 60.588 61.111 17.51 2.12 44.88 1.89
175 176 2.280186 GCTAGCGCCCGCAATACT 60.280 61.111 15.50 0.00 44.88 2.12
176 177 2.598632 GCTAGCGCCCGCAATACTG 61.599 63.158 15.50 0.00 44.88 2.74
177 178 2.587753 TAGCGCCCGCAATACTGC 60.588 61.111 15.50 0.00 45.75 4.40
205 206 2.695359 GGAGCTCCGTATTTGTGTTCA 58.305 47.619 19.06 0.00 0.00 3.18
206 207 3.270877 GGAGCTCCGTATTTGTGTTCAT 58.729 45.455 19.06 0.00 0.00 2.57
207 208 3.689649 GGAGCTCCGTATTTGTGTTCATT 59.310 43.478 19.06 0.00 0.00 2.57
208 209 4.437390 GGAGCTCCGTATTTGTGTTCATTG 60.437 45.833 19.06 0.00 0.00 2.82
209 210 3.119849 AGCTCCGTATTTGTGTTCATTGC 60.120 43.478 0.00 0.00 0.00 3.56
210 211 3.365868 GCTCCGTATTTGTGTTCATTGCA 60.366 43.478 0.00 0.00 0.00 4.08
211 212 4.153958 TCCGTATTTGTGTTCATTGCAC 57.846 40.909 0.00 0.00 37.37 4.57
212 213 3.565902 TCCGTATTTGTGTTCATTGCACA 59.434 39.130 0.00 0.00 44.05 4.57
213 214 3.668191 CCGTATTTGTGTTCATTGCACAC 59.332 43.478 11.94 11.94 45.20 3.82
214 215 3.357531 CGTATTTGTGTTCATTGCACACG 59.642 43.478 13.57 3.81 46.47 4.49
215 216 3.706802 ATTTGTGTTCATTGCACACGA 57.293 38.095 13.57 9.75 46.47 4.35
216 217 2.753989 TTGTGTTCATTGCACACGAG 57.246 45.000 13.57 0.00 46.47 4.18
217 218 1.946745 TGTGTTCATTGCACACGAGA 58.053 45.000 13.57 0.00 46.47 4.04
218 219 1.866601 TGTGTTCATTGCACACGAGAG 59.133 47.619 13.57 0.00 46.47 3.20
219 220 2.741553 TGTGTTCATTGCACACGAGAGT 60.742 45.455 13.57 0.00 46.47 3.24
230 231 3.873781 ACGAGAGTGGGAGAGAGAG 57.126 57.895 0.00 0.00 46.97 3.20
231 232 1.281419 ACGAGAGTGGGAGAGAGAGA 58.719 55.000 0.00 0.00 46.97 3.10
232 233 1.209504 ACGAGAGTGGGAGAGAGAGAG 59.790 57.143 0.00 0.00 46.97 3.20
233 234 1.475034 CGAGAGTGGGAGAGAGAGAGG 60.475 61.905 0.00 0.00 0.00 3.69
234 235 1.564348 GAGAGTGGGAGAGAGAGAGGT 59.436 57.143 0.00 0.00 0.00 3.85
235 236 1.284785 AGAGTGGGAGAGAGAGAGGTG 59.715 57.143 0.00 0.00 0.00 4.00
236 237 0.334676 AGTGGGAGAGAGAGAGGTGG 59.665 60.000 0.00 0.00 0.00 4.61
237 238 0.686112 GTGGGAGAGAGAGAGGTGGG 60.686 65.000 0.00 0.00 0.00 4.61
238 239 1.075600 GGGAGAGAGAGAGGTGGGG 60.076 68.421 0.00 0.00 0.00 4.96
239 240 1.075600 GGAGAGAGAGAGGTGGGGG 60.076 68.421 0.00 0.00 0.00 5.40
240 241 1.700985 GAGAGAGAGAGGTGGGGGT 59.299 63.158 0.00 0.00 0.00 4.95
241 242 0.927767 GAGAGAGAGAGGTGGGGGTA 59.072 60.000 0.00 0.00 0.00 3.69
242 243 0.632294 AGAGAGAGAGGTGGGGGTAC 59.368 60.000 0.00 0.00 0.00 3.34
243 244 0.335361 GAGAGAGAGGTGGGGGTACA 59.665 60.000 0.00 0.00 0.00 2.90
244 245 1.019650 AGAGAGAGGTGGGGGTACAT 58.980 55.000 0.00 0.00 0.00 2.29
245 246 2.177233 GAGAGAGAGGTGGGGGTACATA 59.823 54.545 0.00 0.00 0.00 2.29
246 247 2.798368 AGAGAGAGGTGGGGGTACATAT 59.202 50.000 0.00 0.00 0.00 1.78
247 248 2.900546 GAGAGAGGTGGGGGTACATATG 59.099 54.545 0.00 0.00 0.00 1.78
248 249 2.250273 AGAGAGGTGGGGGTACATATGT 59.750 50.000 13.93 13.93 0.00 2.29
249 250 3.046374 GAGAGGTGGGGGTACATATGTT 58.954 50.000 14.77 0.00 0.00 2.71
250 251 4.078219 AGAGAGGTGGGGGTACATATGTTA 60.078 45.833 14.77 0.00 0.00 2.41
251 252 4.232091 AGAGGTGGGGGTACATATGTTAG 58.768 47.826 14.77 0.00 0.00 2.34
252 253 3.971971 GAGGTGGGGGTACATATGTTAGT 59.028 47.826 14.77 0.00 0.00 2.24
253 254 3.971971 AGGTGGGGGTACATATGTTAGTC 59.028 47.826 14.77 2.35 0.00 2.59
254 255 3.971971 GGTGGGGGTACATATGTTAGTCT 59.028 47.826 14.77 0.00 0.00 3.24
255 256 5.102956 AGGTGGGGGTACATATGTTAGTCTA 60.103 44.000 14.77 0.00 0.00 2.59
256 257 5.011431 GGTGGGGGTACATATGTTAGTCTAC 59.989 48.000 14.77 4.64 0.00 2.59
257 258 5.599656 GTGGGGGTACATATGTTAGTCTACA 59.400 44.000 14.77 2.81 0.00 2.74
258 259 6.269307 GTGGGGGTACATATGTTAGTCTACAT 59.731 42.308 14.77 0.00 41.43 2.29
259 260 7.452501 GTGGGGGTACATATGTTAGTCTACATA 59.547 40.741 14.77 0.00 43.15 2.29
261 262 9.705103 GGGGGTACATATGTTAGTCTACATATA 57.295 37.037 14.77 0.00 45.39 0.86
271 272 9.869667 ATGTTAGTCTACATATAGGCCTATAGG 57.130 37.037 32.88 32.88 36.99 2.57
272 273 8.280084 TGTTAGTCTACATATAGGCCTATAGGG 58.720 40.741 35.59 29.22 34.99 3.53
273 274 6.282568 AGTCTACATATAGGCCTATAGGGG 57.717 45.833 35.59 28.60 34.99 4.79
274 275 5.136392 AGTCTACATATAGGCCTATAGGGGG 59.864 48.000 35.59 28.34 34.99 5.40
275 276 5.058390 TCTACATATAGGCCTATAGGGGGT 58.942 45.833 35.59 28.36 34.99 4.95
276 277 6.103797 GTCTACATATAGGCCTATAGGGGGTA 59.896 46.154 35.59 28.08 34.99 3.69
277 278 6.866507 TCTACATATAGGCCTATAGGGGGTAT 59.133 42.308 35.59 22.66 34.99 2.73
278 279 8.033030 TCTACATATAGGCCTATAGGGGGTATA 58.967 40.741 35.59 22.58 34.99 1.47
279 280 7.696227 ACATATAGGCCTATAGGGGGTATAT 57.304 40.000 35.59 18.38 34.99 0.86
280 281 8.093745 ACATATAGGCCTATAGGGGGTATATT 57.906 38.462 35.59 17.79 34.99 1.28
281 282 7.962003 ACATATAGGCCTATAGGGGGTATATTG 59.038 40.741 35.59 25.61 34.99 1.90
282 283 4.022359 AGGCCTATAGGGGGTATATTGG 57.978 50.000 20.58 0.00 35.18 3.16
283 284 3.053826 GGCCTATAGGGGGTATATTGGG 58.946 54.545 20.58 0.00 35.18 4.12
284 285 3.053826 GCCTATAGGGGGTATATTGGGG 58.946 54.545 20.58 0.00 35.18 4.96
285 286 3.676750 CCTATAGGGGGTATATTGGGGG 58.323 54.545 11.33 0.00 0.00 5.40
286 287 3.015980 CCTATAGGGGGTATATTGGGGGT 59.984 52.174 11.33 0.00 0.00 4.95
287 288 2.747083 TAGGGGGTATATTGGGGGTC 57.253 55.000 0.00 0.00 0.00 4.46
288 289 0.965133 AGGGGGTATATTGGGGGTCT 59.035 55.000 0.00 0.00 0.00 3.85
289 290 1.073098 GGGGGTATATTGGGGGTCTG 58.927 60.000 0.00 0.00 0.00 3.51
290 291 0.404426 GGGGTATATTGGGGGTCTGC 59.596 60.000 0.00 0.00 0.00 4.26
291 292 1.446016 GGGTATATTGGGGGTCTGCT 58.554 55.000 0.00 0.00 0.00 4.24
292 293 1.073923 GGGTATATTGGGGGTCTGCTG 59.926 57.143 0.00 0.00 0.00 4.41
293 294 1.545651 GGTATATTGGGGGTCTGCTGC 60.546 57.143 0.00 0.00 0.00 5.25
294 295 1.142870 GTATATTGGGGGTCTGCTGCA 59.857 52.381 0.88 0.88 0.00 4.41
295 296 0.630673 ATATTGGGGGTCTGCTGCAA 59.369 50.000 3.02 0.00 0.00 4.08
296 297 0.323360 TATTGGGGGTCTGCTGCAAC 60.323 55.000 3.02 5.17 0.00 4.17
297 298 2.370459 ATTGGGGGTCTGCTGCAACA 62.370 55.000 3.02 0.00 0.00 3.33
298 299 2.203480 GGGGGTCTGCTGCAACAA 60.203 61.111 3.02 0.00 0.00 2.83
299 300 2.564721 GGGGGTCTGCTGCAACAAC 61.565 63.158 3.02 2.39 0.00 3.32
300 301 2.639286 GGGTCTGCTGCAACAACG 59.361 61.111 3.02 0.00 0.00 4.10
301 302 2.050985 GGTCTGCTGCAACAACGC 60.051 61.111 3.02 0.00 0.00 4.84
302 303 2.546494 GGTCTGCTGCAACAACGCT 61.546 57.895 3.02 0.00 0.00 5.07
303 304 1.356624 GTCTGCTGCAACAACGCTT 59.643 52.632 3.02 0.00 0.00 4.68
304 305 0.248621 GTCTGCTGCAACAACGCTTT 60.249 50.000 3.02 0.00 0.00 3.51
305 306 1.002900 GTCTGCTGCAACAACGCTTTA 60.003 47.619 3.02 0.00 0.00 1.85
306 307 1.673400 TCTGCTGCAACAACGCTTTAA 59.327 42.857 3.02 0.00 0.00 1.52
307 308 2.098280 TCTGCTGCAACAACGCTTTAAA 59.902 40.909 3.02 0.00 0.00 1.52
308 309 2.458951 TGCTGCAACAACGCTTTAAAG 58.541 42.857 11.02 11.02 0.00 1.85
333 334 9.372189 AGCCAATAAGCAATTATAAAGGAAGAT 57.628 29.630 0.00 0.00 34.23 2.40
372 373 2.034926 GTGCTGCAACAACGCTTTAAAC 60.035 45.455 2.77 0.00 0.00 2.01
373 374 1.187055 GCTGCAACAACGCTTTAAACG 59.813 47.619 0.00 8.12 0.00 3.60
386 387 5.164100 ACGCTTTAAACGCAATAAGCAATTG 60.164 36.000 0.00 0.00 46.62 2.32
433 436 0.376152 GAGATGCTCCAACATGCACG 59.624 55.000 0.00 0.00 42.26 5.34
459 462 7.330946 GCACATTCACCTCTATAAATATACGCA 59.669 37.037 0.00 0.00 0.00 5.24
460 463 8.864024 CACATTCACCTCTATAAATATACGCAG 58.136 37.037 0.00 0.00 0.00 5.18
461 464 8.035394 ACATTCACCTCTATAAATATACGCAGG 58.965 37.037 0.00 0.00 0.00 4.85
464 467 5.807520 CACCTCTATAAATATACGCAGGCAG 59.192 44.000 0.00 0.00 0.00 4.85
469 472 2.979814 AATATACGCAGGCAGTCACA 57.020 45.000 0.00 0.00 0.00 3.58
543 712 4.691860 AAGACTTGATCGGCAGATTTTG 57.308 40.909 0.00 0.00 37.19 2.44
544 713 3.679389 AGACTTGATCGGCAGATTTTGT 58.321 40.909 0.00 0.38 37.19 2.83
545 714 4.074970 AGACTTGATCGGCAGATTTTGTT 58.925 39.130 0.00 0.00 37.19 2.83
586 755 2.029290 ACACCTCATAACAGACGGTCAC 60.029 50.000 11.27 0.00 0.00 3.67
625 795 8.099746 ACTGAAATAAATACAAAAATACGCGC 57.900 30.769 5.73 0.00 0.00 6.86
626 796 7.045225 ACTGAAATAAATACAAAAATACGCGCG 60.045 33.333 30.96 30.96 0.00 6.86
662 832 5.711036 AGTCTAACACTTAACTCGGATGAGT 59.289 40.000 0.00 0.00 45.36 3.41
699 869 3.811497 AGAACCGTAGCTAACCAACAAAC 59.189 43.478 0.00 0.00 0.00 2.93
702 872 3.324556 ACCGTAGCTAACCAACAAACCTA 59.675 43.478 0.00 0.00 0.00 3.08
725 895 2.847254 GCTTAATTCGCTCGTGTCATGC 60.847 50.000 0.00 0.00 0.00 4.06
782 952 1.354031 TCATGCAAGGCCACCTCTTAA 59.646 47.619 5.01 0.00 30.89 1.85
783 953 2.025037 TCATGCAAGGCCACCTCTTAAT 60.025 45.455 5.01 0.00 30.89 1.40
784 954 3.201930 TCATGCAAGGCCACCTCTTAATA 59.798 43.478 5.01 0.00 30.89 0.98
785 955 3.730215 TGCAAGGCCACCTCTTAATAA 57.270 42.857 5.01 0.00 30.89 1.40
786 956 4.249638 TGCAAGGCCACCTCTTAATAAT 57.750 40.909 5.01 0.00 30.89 1.28
787 957 5.381184 TGCAAGGCCACCTCTTAATAATA 57.619 39.130 5.01 0.00 30.89 0.98
788 958 5.761205 TGCAAGGCCACCTCTTAATAATAA 58.239 37.500 5.01 0.00 30.89 1.40
789 959 6.191315 TGCAAGGCCACCTCTTAATAATAAA 58.809 36.000 5.01 0.00 30.89 1.40
790 960 6.838612 TGCAAGGCCACCTCTTAATAATAAAT 59.161 34.615 5.01 0.00 30.89 1.40
791 961 7.147976 GCAAGGCCACCTCTTAATAATAAATG 58.852 38.462 5.01 0.00 30.89 2.32
792 962 7.661040 CAAGGCCACCTCTTAATAATAAATGG 58.339 38.462 5.01 0.00 30.89 3.16
793 963 6.314917 AGGCCACCTCTTAATAATAAATGGG 58.685 40.000 5.01 0.00 0.00 4.00
794 964 5.047306 GGCCACCTCTTAATAATAAATGGGC 60.047 44.000 0.00 0.00 42.14 5.36
795 965 5.538433 GCCACCTCTTAATAATAAATGGGCA 59.462 40.000 0.00 0.00 0.00 5.36
796 966 6.294731 GCCACCTCTTAATAATAAATGGGCAG 60.295 42.308 0.00 0.00 0.00 4.85
797 967 6.777580 CCACCTCTTAATAATAAATGGGCAGT 59.222 38.462 0.00 0.00 0.00 4.40
798 968 7.287696 CCACCTCTTAATAATAAATGGGCAGTT 59.712 37.037 0.00 0.00 0.00 3.16
799 969 8.137437 CACCTCTTAATAATAAATGGGCAGTTG 58.863 37.037 0.00 0.00 0.00 3.16
800 970 7.287696 ACCTCTTAATAATAAATGGGCAGTTGG 59.712 37.037 0.00 0.00 0.00 3.77
801 971 7.287696 CCTCTTAATAATAAATGGGCAGTTGGT 59.712 37.037 0.00 0.00 0.00 3.67
802 972 8.006298 TCTTAATAATAAATGGGCAGTTGGTG 57.994 34.615 0.00 0.00 0.00 4.17
803 973 7.836685 TCTTAATAATAAATGGGCAGTTGGTGA 59.163 33.333 0.00 0.00 0.00 4.02
804 974 5.852282 ATAATAAATGGGCAGTTGGTGAC 57.148 39.130 0.00 0.00 0.00 3.67
805 975 2.969821 TAAATGGGCAGTTGGTGACT 57.030 45.000 0.00 0.00 39.89 3.41
806 976 2.086610 AAATGGGCAGTTGGTGACTT 57.913 45.000 0.00 0.00 36.10 3.01
807 977 1.331214 AATGGGCAGTTGGTGACTTG 58.669 50.000 0.00 0.00 36.10 3.16
808 978 0.540365 ATGGGCAGTTGGTGACTTGG 60.540 55.000 0.00 0.00 36.10 3.61
809 979 1.152756 GGGCAGTTGGTGACTTGGT 60.153 57.895 0.00 0.00 36.10 3.67
810 980 1.455383 GGGCAGTTGGTGACTTGGTG 61.455 60.000 0.00 0.00 36.10 4.17
811 981 0.751643 GGCAGTTGGTGACTTGGTGT 60.752 55.000 0.00 0.00 36.10 4.16
812 982 1.476110 GGCAGTTGGTGACTTGGTGTA 60.476 52.381 0.00 0.00 36.10 2.90
813 983 2.504367 GCAGTTGGTGACTTGGTGTAT 58.496 47.619 0.00 0.00 36.10 2.29
814 984 2.226437 GCAGTTGGTGACTTGGTGTATG 59.774 50.000 0.00 0.00 36.10 2.39
815 985 3.738982 CAGTTGGTGACTTGGTGTATGA 58.261 45.455 0.00 0.00 36.10 2.15
816 986 4.133820 CAGTTGGTGACTTGGTGTATGAA 58.866 43.478 0.00 0.00 36.10 2.57
817 987 4.214119 CAGTTGGTGACTTGGTGTATGAAG 59.786 45.833 0.00 0.00 36.10 3.02
818 988 3.417069 TGGTGACTTGGTGTATGAAGG 57.583 47.619 0.00 0.00 0.00 3.46
819 989 2.084546 GGTGACTTGGTGTATGAAGGC 58.915 52.381 0.00 0.00 0.00 4.35
820 990 2.290323 GGTGACTTGGTGTATGAAGGCT 60.290 50.000 0.00 0.00 0.00 4.58
821 991 3.003480 GTGACTTGGTGTATGAAGGCTC 58.997 50.000 0.00 0.00 0.00 4.70
822 992 2.906389 TGACTTGGTGTATGAAGGCTCT 59.094 45.455 0.00 0.00 0.00 4.09
823 993 4.081642 GTGACTTGGTGTATGAAGGCTCTA 60.082 45.833 0.00 0.00 0.00 2.43
824 994 4.160439 TGACTTGGTGTATGAAGGCTCTAG 59.840 45.833 0.00 0.00 0.00 2.43
825 995 4.353777 ACTTGGTGTATGAAGGCTCTAGA 58.646 43.478 0.00 0.00 0.00 2.43
826 996 4.965532 ACTTGGTGTATGAAGGCTCTAGAT 59.034 41.667 0.00 0.00 0.00 1.98
827 997 6.136857 ACTTGGTGTATGAAGGCTCTAGATA 58.863 40.000 0.00 0.00 0.00 1.98
828 998 6.266558 ACTTGGTGTATGAAGGCTCTAGATAG 59.733 42.308 0.00 0.00 0.00 2.08
829 999 5.706447 TGGTGTATGAAGGCTCTAGATAGT 58.294 41.667 0.00 0.00 0.00 2.12
830 1000 5.536538 TGGTGTATGAAGGCTCTAGATAGTG 59.463 44.000 0.00 0.00 0.00 2.74
831 1001 5.536916 GGTGTATGAAGGCTCTAGATAGTGT 59.463 44.000 0.00 0.00 0.00 3.55
832 1002 6.715718 GGTGTATGAAGGCTCTAGATAGTGTA 59.284 42.308 0.00 0.00 0.00 2.90
833 1003 7.094549 GGTGTATGAAGGCTCTAGATAGTGTAG 60.095 44.444 0.00 0.00 0.00 2.74
834 1004 7.446013 GTGTATGAAGGCTCTAGATAGTGTAGT 59.554 40.741 0.00 0.00 0.00 2.73
835 1005 8.657712 TGTATGAAGGCTCTAGATAGTGTAGTA 58.342 37.037 0.00 0.00 0.00 1.82
836 1006 9.158233 GTATGAAGGCTCTAGATAGTGTAGTAG 57.842 40.741 0.00 0.00 0.00 2.57
837 1007 6.535540 TGAAGGCTCTAGATAGTGTAGTAGG 58.464 44.000 0.00 0.00 0.00 3.18
838 1008 6.101442 TGAAGGCTCTAGATAGTGTAGTAGGT 59.899 42.308 0.00 0.00 0.00 3.08
839 1009 5.871834 AGGCTCTAGATAGTGTAGTAGGTG 58.128 45.833 0.00 0.00 0.00 4.00
840 1010 5.370289 AGGCTCTAGATAGTGTAGTAGGTGT 59.630 44.000 0.00 0.00 0.00 4.16
841 1011 5.702209 GGCTCTAGATAGTGTAGTAGGTGTC 59.298 48.000 0.00 0.00 0.00 3.67
842 1012 6.464749 GGCTCTAGATAGTGTAGTAGGTGTCT 60.465 46.154 0.00 0.00 0.00 3.41
843 1013 6.425721 GCTCTAGATAGTGTAGTAGGTGTCTG 59.574 46.154 0.00 0.00 0.00 3.51
844 1014 6.289834 TCTAGATAGTGTAGTAGGTGTCTGC 58.710 44.000 0.00 0.00 0.00 4.26
845 1015 4.856509 AGATAGTGTAGTAGGTGTCTGCA 58.143 43.478 0.00 0.00 0.00 4.41
846 1016 4.884744 AGATAGTGTAGTAGGTGTCTGCAG 59.115 45.833 7.63 7.63 0.00 4.41
952 1132 2.934553 GGTAAAGTGGAGATACAACGCC 59.065 50.000 0.00 0.00 0.00 5.68
972 1153 3.748668 GCCTGATACATGCAATACCCTGT 60.749 47.826 0.00 0.00 0.00 4.00
1000 1181 4.781616 TATCGTGGGGTCGGGCCA 62.782 66.667 4.39 0.00 39.65 5.36
1032 1213 1.336517 CGTCAGAGAAAAGTGGGCGTA 60.337 52.381 0.00 0.00 0.00 4.42
1260 1458 2.978824 GGAGCAACTACCTCGGCA 59.021 61.111 0.00 0.00 0.00 5.69
1583 1782 2.180204 GGATGTGGCGTCGGGATTG 61.180 63.158 0.00 0.00 0.00 2.67
1615 1814 3.470567 CGTCTCGCACAACTCCGC 61.471 66.667 0.00 0.00 0.00 5.54
1901 2211 2.682494 ACCACCATCCGCGTAGGT 60.682 61.111 4.92 6.98 41.99 3.08
1918 2228 0.676782 GGTTGGAAGCGCAGGTACAT 60.677 55.000 11.47 0.00 37.06 2.29
1978 2289 3.681897 CCTTGATAGCATTCATACGAGCC 59.318 47.826 0.00 0.00 0.00 4.70
2013 2324 6.322491 AGTTTCATTAGTTTAGGCGAATTGC 58.678 36.000 0.00 0.00 45.38 3.56
2347 3430 5.375354 TGAATGTATGGTATGGGGGAGAAAT 59.625 40.000 0.00 0.00 0.00 2.17
2437 3521 4.588528 AGCAGTTTGGGCTCTTTTAAATCA 59.411 37.500 0.00 0.00 36.81 2.57
2695 3784 4.281435 TGAACAAGCAAATCATCATGGTGT 59.719 37.500 5.73 0.00 0.00 4.16
2700 3789 3.446161 AGCAAATCATCATGGTGTTCCTG 59.554 43.478 5.73 0.82 34.23 3.86
2701 3790 3.429822 GCAAATCATCATGGTGTTCCTGG 60.430 47.826 5.73 0.00 34.23 4.45
2702 3791 3.744940 AATCATCATGGTGTTCCTGGT 57.255 42.857 5.73 0.00 34.23 4.00
2712 3801 2.031919 TTCCTGGTTGCGATGCGT 59.968 55.556 0.00 0.00 0.00 5.24
2751 3840 1.586578 CCGATACCGAACATCACGTTG 59.413 52.381 0.00 0.00 38.19 4.10
2842 3931 0.813610 CCACAACCAGAAGTCGCACA 60.814 55.000 0.00 0.00 0.00 4.57
2844 3933 0.532862 ACAACCAGAAGTCGCACAGG 60.533 55.000 0.00 0.00 0.00 4.00
2850 3939 4.379243 AAGTCGCACAGGCCTCCG 62.379 66.667 0.00 6.45 36.38 4.63
2913 4003 0.802494 AAGCAAAACGCCGGATACTG 59.198 50.000 5.05 0.00 44.04 2.74
2929 4019 4.451774 GGATACTGCAGCAAGAGATTGATC 59.548 45.833 15.27 1.57 0.00 2.92
2936 4026 5.094134 GCAGCAAGAGATTGATCTTTGTTC 58.906 41.667 0.00 0.00 37.43 3.18
2937 4027 5.322310 CAGCAAGAGATTGATCTTTGTTCG 58.678 41.667 0.00 0.00 37.43 3.95
2938 4028 5.121298 CAGCAAGAGATTGATCTTTGTTCGA 59.879 40.000 0.00 0.00 37.43 3.71
2942 4032 7.379529 GCAAGAGATTGATCTTTGTTCGAAAAA 59.620 33.333 0.00 0.00 37.43 1.94
2943 4033 8.899776 CAAGAGATTGATCTTTGTTCGAAAAAG 58.100 33.333 18.66 18.66 37.43 2.27
2982 4072 0.163146 GCACTTGTAGAAACGGACGC 59.837 55.000 0.00 0.00 0.00 5.19
3322 4449 3.665190 AGTTGTGCTTGTAGGCTAGTTC 58.335 45.455 0.00 0.00 0.00 3.01
3341 4468 4.632688 AGTTCGAACGAGAAAGTCCAAAAA 59.367 37.500 21.87 0.00 0.00 1.94
3342 4469 4.789095 TCGAACGAGAAAGTCCAAAAAG 57.211 40.909 0.00 0.00 0.00 2.27
3372 4499 1.868997 GACAACGACTGGTGCATGG 59.131 57.895 0.00 0.00 0.00 3.66
3384 4511 1.336755 GGTGCATGGGCCTTAAATACG 59.663 52.381 4.53 0.00 40.13 3.06
3405 4532 4.517453 ACGTGCATATGTGGTAAAGTGTTT 59.483 37.500 4.29 0.00 0.00 2.83
3406 4533 5.701750 ACGTGCATATGTGGTAAAGTGTTTA 59.298 36.000 4.29 0.00 0.00 2.01
3410 4537 6.872547 TGCATATGTGGTAAAGTGTTTACGTA 59.127 34.615 4.29 0.00 44.96 3.57
3419 4546 7.925483 TGGTAAAGTGTTTACGTAATACAGTGT 59.075 33.333 21.18 19.32 44.96 3.55
3446 4573 5.062558 GTCGCAACGGTAATATTGTGTACTT 59.937 40.000 0.00 0.00 37.54 2.24
3474 4601 3.720193 GTGCACAGTGCTCCGCAG 61.720 66.667 25.83 0.00 45.31 5.18
3476 4603 4.996434 GCACAGTGCTCCGCAGGT 62.996 66.667 18.92 0.00 41.34 4.00
3490 4617 4.664677 AGGTGTGCGCCAGACGTC 62.665 66.667 7.70 7.70 46.11 4.34
3517 4644 1.339247 TGCCCGGTACACCAAATACAG 60.339 52.381 0.00 0.00 35.14 2.74
3528 4655 5.695818 ACACCAAATACAGCAAATACGAAC 58.304 37.500 0.00 0.00 0.00 3.95
3531 4658 5.106317 ACCAAATACAGCAAATACGAACCAG 60.106 40.000 0.00 0.00 0.00 4.00
3533 4660 6.348950 CCAAATACAGCAAATACGAACCAGAA 60.349 38.462 0.00 0.00 0.00 3.02
3534 4661 5.796350 ATACAGCAAATACGAACCAGAAC 57.204 39.130 0.00 0.00 0.00 3.01
3535 4662 2.478894 ACAGCAAATACGAACCAGAACG 59.521 45.455 0.00 0.00 0.00 3.95
3536 4663 1.463444 AGCAAATACGAACCAGAACGC 59.537 47.619 0.00 0.00 0.00 4.84
3537 4664 1.465187 GCAAATACGAACCAGAACGCC 60.465 52.381 0.00 0.00 0.00 5.68
3555 4682 1.374343 CCCGCTCTCGCCGCTATATA 61.374 60.000 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.351054 AGCAAAGGGGAGGCGGTG 62.351 66.667 0.00 0.00 0.00 4.94
3 4 4.351054 CAGCAAAGGGGAGGCGGT 62.351 66.667 0.00 0.00 0.00 5.68
6 7 2.363406 ATGCAGCAAAGGGGAGGC 60.363 61.111 0.00 0.00 0.00 4.70
7 8 2.718073 GCATGCAGCAAAGGGGAGG 61.718 63.158 14.21 0.00 44.79 4.30
8 9 2.890371 GCATGCAGCAAAGGGGAG 59.110 61.111 14.21 0.00 44.79 4.30
9 10 3.063704 CGCATGCAGCAAAGGGGA 61.064 61.111 19.57 0.00 46.13 4.81
10 11 4.137872 CCGCATGCAGCAAAGGGG 62.138 66.667 19.57 16.63 46.13 4.79
11 12 4.807039 GCCGCATGCAGCAAAGGG 62.807 66.667 20.90 10.91 46.13 3.95
12 13 4.807039 GGCCGCATGCAGCAAAGG 62.807 66.667 26.25 14.76 46.13 3.11
13 14 4.058732 TGGCCGCATGCAGCAAAG 62.059 61.111 26.25 4.62 46.13 2.77
14 15 4.360964 GTGGCCGCATGCAGCAAA 62.361 61.111 26.25 11.95 46.13 3.68
32 33 3.019003 AATGACGGAGGGAGTGGCG 62.019 63.158 0.00 0.00 0.00 5.69
33 34 1.450312 CAATGACGGAGGGAGTGGC 60.450 63.158 0.00 0.00 0.00 5.01
34 35 0.108138 GTCAATGACGGAGGGAGTGG 60.108 60.000 0.00 0.00 0.00 4.00
35 36 0.608130 TGTCAATGACGGAGGGAGTG 59.392 55.000 9.00 0.00 34.95 3.51
36 37 1.348064 TTGTCAATGACGGAGGGAGT 58.652 50.000 9.00 0.00 34.95 3.85
37 38 2.093500 TGATTGTCAATGACGGAGGGAG 60.093 50.000 9.00 0.00 34.95 4.30
38 39 1.905894 TGATTGTCAATGACGGAGGGA 59.094 47.619 9.00 0.00 34.95 4.20
39 40 2.009774 GTGATTGTCAATGACGGAGGG 58.990 52.381 9.00 0.00 34.95 4.30
40 41 2.698803 TGTGATTGTCAATGACGGAGG 58.301 47.619 9.00 0.00 34.95 4.30
41 42 3.000623 CGATGTGATTGTCAATGACGGAG 59.999 47.826 9.00 1.18 34.95 4.63
42 43 2.929398 CGATGTGATTGTCAATGACGGA 59.071 45.455 9.00 0.24 34.95 4.69
43 44 2.672874 ACGATGTGATTGTCAATGACGG 59.327 45.455 9.00 5.27 34.95 4.79
44 45 3.540167 CGACGATGTGATTGTCAATGACG 60.540 47.826 9.00 2.10 42.63 4.35
45 46 3.367932 ACGACGATGTGATTGTCAATGAC 59.632 43.478 6.41 6.41 42.63 3.06
46 47 3.584834 ACGACGATGTGATTGTCAATGA 58.415 40.909 1.88 0.00 42.63 2.57
47 48 3.367630 TGACGACGATGTGATTGTCAATG 59.632 43.478 1.88 0.00 42.63 2.82
48 49 3.367932 GTGACGACGATGTGATTGTCAAT 59.632 43.478 0.00 0.00 42.63 2.57
49 50 2.729360 GTGACGACGATGTGATTGTCAA 59.271 45.455 0.00 0.00 42.63 3.18
50 51 2.324860 GTGACGACGATGTGATTGTCA 58.675 47.619 0.00 0.00 42.63 3.58
51 52 1.654105 GGTGACGACGATGTGATTGTC 59.346 52.381 0.00 0.00 39.76 3.18
52 53 1.710013 GGTGACGACGATGTGATTGT 58.290 50.000 0.00 0.00 0.00 2.71
75 76 0.312416 TGGTTGTACAATGCGGCAAC 59.688 50.000 12.26 0.37 40.08 4.17
76 77 0.312416 GTGGTTGTACAATGCGGCAA 59.688 50.000 12.26 0.00 0.00 4.52
77 78 0.819666 TGTGGTTGTACAATGCGGCA 60.820 50.000 12.26 4.58 0.00 5.69
78 79 0.386731 GTGTGGTTGTACAATGCGGC 60.387 55.000 12.26 0.00 31.36 6.53
79 80 0.239879 GGTGTGGTTGTACAATGCGG 59.760 55.000 12.26 0.00 31.36 5.69
80 81 0.110419 CGGTGTGGTTGTACAATGCG 60.110 55.000 12.26 0.00 31.36 4.73
81 82 0.386731 GCGGTGTGGTTGTACAATGC 60.387 55.000 12.26 5.89 31.36 3.56
82 83 0.239879 GGCGGTGTGGTTGTACAATG 59.760 55.000 12.26 0.00 31.36 2.82
83 84 0.891904 GGGCGGTGTGGTTGTACAAT 60.892 55.000 12.26 0.00 31.36 2.71
84 85 1.526455 GGGCGGTGTGGTTGTACAA 60.526 57.895 3.59 3.59 31.36 2.41
85 86 2.111460 GGGCGGTGTGGTTGTACA 59.889 61.111 0.00 0.00 0.00 2.90
86 87 3.045492 CGGGCGGTGTGGTTGTAC 61.045 66.667 0.00 0.00 0.00 2.90
87 88 3.518419 GACGGGCGGTGTGGTTGTA 62.518 63.158 1.11 0.00 0.00 2.41
88 89 4.922026 GACGGGCGGTGTGGTTGT 62.922 66.667 1.11 0.00 0.00 3.32
110 111 3.740397 CAGCATGGTGGTGTGGCG 61.740 66.667 17.24 0.00 40.68 5.69
111 112 4.060038 GCAGCATGGTGGTGTGGC 62.060 66.667 25.24 6.95 46.67 5.01
112 113 3.376078 GGCAGCATGGTGGTGTGG 61.376 66.667 25.24 0.00 46.67 4.17
113 114 1.904865 AAGGCAGCATGGTGGTGTG 60.905 57.895 25.24 0.74 46.67 3.82
114 115 1.904865 CAAGGCAGCATGGTGGTGT 60.905 57.895 25.24 0.00 46.67 4.16
116 117 1.604593 GACAAGGCAGCATGGTGGT 60.605 57.895 25.24 14.73 35.86 4.16
117 118 2.693762 CGACAAGGCAGCATGGTGG 61.694 63.158 25.24 11.64 35.86 4.61
118 119 0.673333 TACGACAAGGCAGCATGGTG 60.673 55.000 20.52 20.52 35.86 4.17
119 120 0.391661 CTACGACAAGGCAGCATGGT 60.392 55.000 0.00 0.00 35.86 3.55
120 121 0.108186 TCTACGACAAGGCAGCATGG 60.108 55.000 0.00 0.00 35.86 3.66
121 122 1.725641 TTCTACGACAAGGCAGCATG 58.274 50.000 0.00 0.00 40.87 4.06
122 123 2.283298 CATTCTACGACAAGGCAGCAT 58.717 47.619 0.00 0.00 0.00 3.79
123 124 1.001974 ACATTCTACGACAAGGCAGCA 59.998 47.619 0.00 0.00 0.00 4.41
124 125 1.726853 ACATTCTACGACAAGGCAGC 58.273 50.000 0.00 0.00 0.00 5.25
125 126 3.067106 ACAACATTCTACGACAAGGCAG 58.933 45.455 0.00 0.00 0.00 4.85
126 127 3.064207 GACAACATTCTACGACAAGGCA 58.936 45.455 0.00 0.00 0.00 4.75
127 128 2.092211 CGACAACATTCTACGACAAGGC 59.908 50.000 0.00 0.00 0.00 4.35
128 129 2.666508 CCGACAACATTCTACGACAAGG 59.333 50.000 0.00 0.00 0.00 3.61
129 130 3.314553 ACCGACAACATTCTACGACAAG 58.685 45.455 0.00 0.00 0.00 3.16
130 131 3.374220 ACCGACAACATTCTACGACAA 57.626 42.857 0.00 0.00 0.00 3.18
131 132 3.119743 CCTACCGACAACATTCTACGACA 60.120 47.826 0.00 0.00 0.00 4.35
132 133 3.119708 ACCTACCGACAACATTCTACGAC 60.120 47.826 0.00 0.00 0.00 4.34
133 134 3.084039 ACCTACCGACAACATTCTACGA 58.916 45.455 0.00 0.00 0.00 3.43
134 135 3.432782 GACCTACCGACAACATTCTACG 58.567 50.000 0.00 0.00 0.00 3.51
135 136 3.119708 ACGACCTACCGACAACATTCTAC 60.120 47.826 0.00 0.00 0.00 2.59
136 137 3.084039 ACGACCTACCGACAACATTCTA 58.916 45.455 0.00 0.00 0.00 2.10
137 138 1.891150 ACGACCTACCGACAACATTCT 59.109 47.619 0.00 0.00 0.00 2.40
138 139 1.990563 CACGACCTACCGACAACATTC 59.009 52.381 0.00 0.00 0.00 2.67
139 140 1.938016 GCACGACCTACCGACAACATT 60.938 52.381 0.00 0.00 0.00 2.71
140 141 0.389426 GCACGACCTACCGACAACAT 60.389 55.000 0.00 0.00 0.00 2.71
141 142 1.007038 GCACGACCTACCGACAACA 60.007 57.895 0.00 0.00 0.00 3.33
142 143 0.523072 TAGCACGACCTACCGACAAC 59.477 55.000 0.00 0.00 0.00 3.32
143 144 0.806868 CTAGCACGACCTACCGACAA 59.193 55.000 0.00 0.00 0.00 3.18
144 145 1.651240 GCTAGCACGACCTACCGACA 61.651 60.000 10.63 0.00 0.00 4.35
145 146 1.063811 GCTAGCACGACCTACCGAC 59.936 63.158 10.63 0.00 0.00 4.79
146 147 2.466982 CGCTAGCACGACCTACCGA 61.467 63.158 16.45 0.00 34.06 4.69
147 148 2.024305 CGCTAGCACGACCTACCG 59.976 66.667 16.45 0.00 34.06 4.02
148 149 2.278661 GCGCTAGCACGACCTACC 60.279 66.667 16.45 0.00 44.35 3.18
158 159 2.280186 AGTATTGCGGGCGCTAGC 60.280 61.111 18.05 18.05 42.51 3.42
159 160 2.598632 GCAGTATTGCGGGCGCTAG 61.599 63.158 7.64 2.28 41.13 3.42
160 161 2.587753 GCAGTATTGCGGGCGCTA 60.588 61.111 7.64 0.00 41.13 4.26
185 186 2.695359 TGAACACAAATACGGAGCTCC 58.305 47.619 23.79 23.79 0.00 4.70
186 187 4.651994 CAATGAACACAAATACGGAGCTC 58.348 43.478 4.71 4.71 0.00 4.09
187 188 3.119849 GCAATGAACACAAATACGGAGCT 60.120 43.478 0.00 0.00 0.00 4.09
188 189 3.171277 GCAATGAACACAAATACGGAGC 58.829 45.455 0.00 0.00 0.00 4.70
189 190 4.158384 GTGCAATGAACACAAATACGGAG 58.842 43.478 0.00 0.00 37.96 4.63
190 191 3.565902 TGTGCAATGAACACAAATACGGA 59.434 39.130 0.00 0.00 44.68 4.69
191 192 3.894920 TGTGCAATGAACACAAATACGG 58.105 40.909 0.00 0.00 44.68 4.02
198 199 1.866601 CTCTCGTGTGCAATGAACACA 59.133 47.619 22.94 10.16 46.68 3.72
199 200 1.867233 ACTCTCGTGTGCAATGAACAC 59.133 47.619 14.39 14.39 43.62 3.32
200 201 1.866601 CACTCTCGTGTGCAATGAACA 59.133 47.619 0.00 0.00 36.39 3.18
201 202 1.195448 CCACTCTCGTGTGCAATGAAC 59.805 52.381 0.00 0.00 39.55 3.18
202 203 1.511850 CCACTCTCGTGTGCAATGAA 58.488 50.000 0.00 0.00 39.55 2.57
203 204 0.320683 CCCACTCTCGTGTGCAATGA 60.321 55.000 0.00 0.00 39.55 2.57
204 205 0.320683 TCCCACTCTCGTGTGCAATG 60.321 55.000 0.00 0.00 39.55 2.82
205 206 0.036952 CTCCCACTCTCGTGTGCAAT 60.037 55.000 0.00 0.00 39.55 3.56
206 207 1.112916 TCTCCCACTCTCGTGTGCAA 61.113 55.000 0.00 0.00 39.55 4.08
207 208 1.527433 CTCTCCCACTCTCGTGTGCA 61.527 60.000 0.00 0.00 39.55 4.57
208 209 1.214062 CTCTCCCACTCTCGTGTGC 59.786 63.158 0.00 0.00 39.55 4.57
209 210 0.808125 CTCTCTCCCACTCTCGTGTG 59.192 60.000 0.00 0.00 39.55 3.82
210 211 0.693622 TCTCTCTCCCACTCTCGTGT 59.306 55.000 0.00 0.00 39.55 4.49
211 212 1.065782 TCTCTCTCTCCCACTCTCGTG 60.066 57.143 0.00 0.00 40.89 4.35
212 213 1.209504 CTCTCTCTCTCCCACTCTCGT 59.790 57.143 0.00 0.00 0.00 4.18
213 214 1.475034 CCTCTCTCTCTCCCACTCTCG 60.475 61.905 0.00 0.00 0.00 4.04
214 215 1.564348 ACCTCTCTCTCTCCCACTCTC 59.436 57.143 0.00 0.00 0.00 3.20
215 216 1.284785 CACCTCTCTCTCTCCCACTCT 59.715 57.143 0.00 0.00 0.00 3.24
216 217 1.684869 CCACCTCTCTCTCTCCCACTC 60.685 61.905 0.00 0.00 0.00 3.51
217 218 0.334676 CCACCTCTCTCTCTCCCACT 59.665 60.000 0.00 0.00 0.00 4.00
218 219 0.686112 CCCACCTCTCTCTCTCCCAC 60.686 65.000 0.00 0.00 0.00 4.61
219 220 1.700368 CCCACCTCTCTCTCTCCCA 59.300 63.158 0.00 0.00 0.00 4.37
220 221 1.075600 CCCCACCTCTCTCTCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
221 222 1.075600 CCCCCACCTCTCTCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
222 223 0.927767 TACCCCCACCTCTCTCTCTC 59.072 60.000 0.00 0.00 0.00 3.20
223 224 0.632294 GTACCCCCACCTCTCTCTCT 59.368 60.000 0.00 0.00 0.00 3.10
224 225 0.335361 TGTACCCCCACCTCTCTCTC 59.665 60.000 0.00 0.00 0.00 3.20
225 226 1.019650 ATGTACCCCCACCTCTCTCT 58.980 55.000 0.00 0.00 0.00 3.10
226 227 2.769602 TATGTACCCCCACCTCTCTC 57.230 55.000 0.00 0.00 0.00 3.20
227 228 2.250273 ACATATGTACCCCCACCTCTCT 59.750 50.000 6.56 0.00 0.00 3.10
228 229 2.690840 ACATATGTACCCCCACCTCTC 58.309 52.381 6.56 0.00 0.00 3.20
229 230 2.889522 ACATATGTACCCCCACCTCT 57.110 50.000 6.56 0.00 0.00 3.69
230 231 3.971971 ACTAACATATGTACCCCCACCTC 59.028 47.826 9.21 0.00 0.00 3.85
231 232 3.971971 GACTAACATATGTACCCCCACCT 59.028 47.826 9.21 0.00 0.00 4.00
232 233 3.971971 AGACTAACATATGTACCCCCACC 59.028 47.826 9.21 0.00 0.00 4.61
233 234 5.599656 TGTAGACTAACATATGTACCCCCAC 59.400 44.000 9.21 4.89 0.00 4.61
234 235 5.779636 TGTAGACTAACATATGTACCCCCA 58.220 41.667 9.21 0.00 0.00 4.96
235 236 6.930068 ATGTAGACTAACATATGTACCCCC 57.070 41.667 9.21 0.00 38.31 5.40
245 246 9.869667 CCTATAGGCCTATATGTAGACTAACAT 57.130 37.037 28.79 5.90 42.62 2.71
246 247 8.280084 CCCTATAGGCCTATATGTAGACTAACA 58.720 40.741 28.79 7.75 0.00 2.41
247 248 7.724951 CCCCTATAGGCCTATATGTAGACTAAC 59.275 44.444 28.79 0.00 0.00 2.34
248 249 7.146997 CCCCCTATAGGCCTATATGTAGACTAA 60.147 44.444 28.79 8.43 0.00 2.24
249 250 6.334774 CCCCCTATAGGCCTATATGTAGACTA 59.665 46.154 28.79 9.12 0.00 2.59
250 251 5.136392 CCCCCTATAGGCCTATATGTAGACT 59.864 48.000 28.79 7.41 0.00 3.24
251 252 5.103172 ACCCCCTATAGGCCTATATGTAGAC 60.103 48.000 28.79 0.00 0.00 2.59
252 253 5.058390 ACCCCCTATAGGCCTATATGTAGA 58.942 45.833 28.79 11.19 0.00 2.59
253 254 5.420215 ACCCCCTATAGGCCTATATGTAG 57.580 47.826 28.79 20.04 0.00 2.74
254 255 8.799095 ATATACCCCCTATAGGCCTATATGTA 57.201 38.462 28.79 24.38 0.00 2.29
255 256 7.696227 ATATACCCCCTATAGGCCTATATGT 57.304 40.000 28.79 23.36 0.00 2.29
256 257 7.403231 CCAATATACCCCCTATAGGCCTATATG 59.597 44.444 28.79 25.13 0.00 1.78
257 258 7.482277 CCCAATATACCCCCTATAGGCCTATAT 60.482 44.444 28.79 17.87 0.00 0.86
258 259 6.183361 CCCAATATACCCCCTATAGGCCTATA 60.183 46.154 27.27 27.27 0.00 1.31
259 260 5.403837 CCCAATATACCCCCTATAGGCCTAT 60.404 48.000 28.00 28.00 0.00 2.57
260 261 4.077626 CCCAATATACCCCCTATAGGCCTA 60.078 50.000 16.60 16.60 0.00 3.93
261 262 3.312155 CCCAATATACCCCCTATAGGCCT 60.312 52.174 11.78 11.78 0.00 5.19
262 263 3.053826 CCCAATATACCCCCTATAGGCC 58.946 54.545 13.85 0.00 0.00 5.19
263 264 3.053826 CCCCAATATACCCCCTATAGGC 58.946 54.545 13.85 0.00 0.00 3.93
264 265 3.015980 ACCCCCAATATACCCCCTATAGG 59.984 52.174 12.27 12.27 0.00 2.57
265 266 4.014593 AGACCCCCAATATACCCCCTATAG 60.015 50.000 0.00 0.00 0.00 1.31
266 267 3.947230 AGACCCCCAATATACCCCCTATA 59.053 47.826 0.00 0.00 0.00 1.31
267 268 2.745096 AGACCCCCAATATACCCCCTAT 59.255 50.000 0.00 0.00 0.00 2.57
268 269 2.157911 CAGACCCCCAATATACCCCCTA 60.158 54.545 0.00 0.00 0.00 3.53
269 270 0.965133 AGACCCCCAATATACCCCCT 59.035 55.000 0.00 0.00 0.00 4.79
270 271 1.073098 CAGACCCCCAATATACCCCC 58.927 60.000 0.00 0.00 0.00 5.40
271 272 0.404426 GCAGACCCCCAATATACCCC 59.596 60.000 0.00 0.00 0.00 4.95
272 273 1.073923 CAGCAGACCCCCAATATACCC 59.926 57.143 0.00 0.00 0.00 3.69
273 274 1.545651 GCAGCAGACCCCCAATATACC 60.546 57.143 0.00 0.00 0.00 2.73
274 275 1.142870 TGCAGCAGACCCCCAATATAC 59.857 52.381 0.00 0.00 0.00 1.47
275 276 1.517238 TGCAGCAGACCCCCAATATA 58.483 50.000 0.00 0.00 0.00 0.86
276 277 0.630673 TTGCAGCAGACCCCCAATAT 59.369 50.000 0.00 0.00 0.00 1.28
277 278 0.323360 GTTGCAGCAGACCCCCAATA 60.323 55.000 0.00 0.00 0.00 1.90
278 279 1.607467 GTTGCAGCAGACCCCCAAT 60.607 57.895 0.00 0.00 0.00 3.16
279 280 2.203480 GTTGCAGCAGACCCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
280 281 3.067084 TTGTTGCAGCAGACCCCCA 62.067 57.895 2.72 0.00 0.00 4.96
281 282 2.203480 TTGTTGCAGCAGACCCCC 60.203 61.111 2.72 0.00 0.00 5.40
282 283 2.908073 CGTTGTTGCAGCAGACCCC 61.908 63.158 2.72 0.00 0.00 4.95
283 284 2.639286 CGTTGTTGCAGCAGACCC 59.361 61.111 2.72 0.00 0.00 4.46
284 285 2.050985 GCGTTGTTGCAGCAGACC 60.051 61.111 2.72 0.00 34.15 3.85
285 286 0.248621 AAAGCGTTGTTGCAGCAGAC 60.249 50.000 2.72 4.77 37.31 3.51
286 287 1.304254 TAAAGCGTTGTTGCAGCAGA 58.696 45.000 2.72 0.00 37.31 4.26
287 288 2.118228 TTAAAGCGTTGTTGCAGCAG 57.882 45.000 2.72 0.00 37.31 4.24
288 289 2.458951 CTTTAAAGCGTTGTTGCAGCA 58.541 42.857 0.00 0.00 37.31 4.41
289 290 1.190103 GCTTTAAAGCGTTGTTGCAGC 59.810 47.619 23.53 0.00 42.88 5.25
305 306 9.822185 CTTCCTTTATAATTGCTTATTGGCTTT 57.178 29.630 0.00 0.00 0.00 3.51
306 307 9.200817 TCTTCCTTTATAATTGCTTATTGGCTT 57.799 29.630 0.00 0.00 0.00 4.35
307 308 8.766994 TCTTCCTTTATAATTGCTTATTGGCT 57.233 30.769 0.00 0.00 0.00 4.75
308 309 9.987272 AATCTTCCTTTATAATTGCTTATTGGC 57.013 29.630 0.00 0.00 0.00 4.52
372 373 6.321717 TCTTCCTTTACAATTGCTTATTGCG 58.678 36.000 5.05 0.00 46.21 4.85
373 374 8.707938 AATCTTCCTTTACAATTGCTTATTGC 57.292 30.769 5.05 0.00 46.21 3.56
433 436 7.330946 TGCGTATATTTATAGAGGTGAATGTGC 59.669 37.037 0.00 0.00 0.00 4.57
459 462 1.944177 AGAGGTACATGTGACTGCCT 58.056 50.000 9.11 7.92 0.00 4.75
460 463 2.770164 AAGAGGTACATGTGACTGCC 57.230 50.000 9.11 3.05 0.00 4.85
499 502 0.249911 GTGGCGCTGATAAGGGTAGG 60.250 60.000 7.64 0.00 0.00 3.18
543 712 9.341899 GGTGTCTGTGATGATTTTGTTAATAAC 57.658 33.333 0.00 0.00 0.00 1.89
544 713 9.295825 AGGTGTCTGTGATGATTTTGTTAATAA 57.704 29.630 0.00 0.00 0.00 1.40
545 714 8.862325 AGGTGTCTGTGATGATTTTGTTAATA 57.138 30.769 0.00 0.00 0.00 0.98
625 795 1.723003 GTTAGACTTAACACGGGTGCG 59.277 52.381 0.00 0.00 39.18 5.34
626 796 2.758009 TGTTAGACTTAACACGGGTGC 58.242 47.619 0.00 0.00 43.12 5.01
654 824 2.672961 TGCTAGAACCAACTCATCCG 57.327 50.000 0.00 0.00 0.00 4.18
683 853 4.941873 AGCATAGGTTTGTTGGTTAGCTAC 59.058 41.667 0.00 0.00 0.00 3.58
699 869 3.123804 ACACGAGCGAATTAAGCATAGG 58.876 45.455 7.93 0.00 37.01 2.57
702 872 2.616960 TGACACGAGCGAATTAAGCAT 58.383 42.857 7.93 0.00 37.01 3.79
782 952 5.518865 AGTCACCAACTGCCCATTTATTAT 58.481 37.500 0.00 0.00 36.65 1.28
783 953 4.929479 AGTCACCAACTGCCCATTTATTA 58.071 39.130 0.00 0.00 36.65 0.98
784 954 3.778265 AGTCACCAACTGCCCATTTATT 58.222 40.909 0.00 0.00 36.65 1.40
785 955 3.456380 AGTCACCAACTGCCCATTTAT 57.544 42.857 0.00 0.00 36.65 1.40
786 956 2.890311 CAAGTCACCAACTGCCCATTTA 59.110 45.455 0.00 0.00 38.58 1.40
787 957 1.688197 CAAGTCACCAACTGCCCATTT 59.312 47.619 0.00 0.00 38.58 2.32
788 958 1.331214 CAAGTCACCAACTGCCCATT 58.669 50.000 0.00 0.00 38.58 3.16
789 959 0.540365 CCAAGTCACCAACTGCCCAT 60.540 55.000 0.00 0.00 38.58 4.00
790 960 1.152777 CCAAGTCACCAACTGCCCA 60.153 57.895 0.00 0.00 38.58 5.36
791 961 1.152756 ACCAAGTCACCAACTGCCC 60.153 57.895 0.00 0.00 38.58 5.36
792 962 0.751643 ACACCAAGTCACCAACTGCC 60.752 55.000 0.00 0.00 38.58 4.85
793 963 1.961793 TACACCAAGTCACCAACTGC 58.038 50.000 0.00 0.00 38.58 4.40
794 964 3.738982 TCATACACCAAGTCACCAACTG 58.261 45.455 0.00 0.00 38.58 3.16
795 965 4.389374 CTTCATACACCAAGTCACCAACT 58.611 43.478 0.00 0.00 41.10 3.16
796 966 3.502211 CCTTCATACACCAAGTCACCAAC 59.498 47.826 0.00 0.00 0.00 3.77
797 967 3.750371 CCTTCATACACCAAGTCACCAA 58.250 45.455 0.00 0.00 0.00 3.67
798 968 2.552155 GCCTTCATACACCAAGTCACCA 60.552 50.000 0.00 0.00 0.00 4.17
799 969 2.084546 GCCTTCATACACCAAGTCACC 58.915 52.381 0.00 0.00 0.00 4.02
800 970 3.003480 GAGCCTTCATACACCAAGTCAC 58.997 50.000 0.00 0.00 0.00 3.67
801 971 2.906389 AGAGCCTTCATACACCAAGTCA 59.094 45.455 0.00 0.00 0.00 3.41
802 972 3.618690 AGAGCCTTCATACACCAAGTC 57.381 47.619 0.00 0.00 0.00 3.01
803 973 4.353777 TCTAGAGCCTTCATACACCAAGT 58.646 43.478 0.00 0.00 0.00 3.16
804 974 5.543507 ATCTAGAGCCTTCATACACCAAG 57.456 43.478 0.00 0.00 0.00 3.61
805 975 6.040955 CACTATCTAGAGCCTTCATACACCAA 59.959 42.308 0.00 0.00 0.00 3.67
806 976 5.536538 CACTATCTAGAGCCTTCATACACCA 59.463 44.000 0.00 0.00 0.00 4.17
807 977 5.536916 ACACTATCTAGAGCCTTCATACACC 59.463 44.000 0.00 0.00 0.00 4.16
808 978 6.642707 ACACTATCTAGAGCCTTCATACAC 57.357 41.667 0.00 0.00 0.00 2.90
809 979 7.519057 ACTACACTATCTAGAGCCTTCATACA 58.481 38.462 0.00 0.00 0.00 2.29
810 980 7.989416 ACTACACTATCTAGAGCCTTCATAC 57.011 40.000 0.00 0.00 0.00 2.39
811 981 8.322828 CCTACTACACTATCTAGAGCCTTCATA 58.677 40.741 0.00 0.00 0.00 2.15
812 982 7.172342 CCTACTACACTATCTAGAGCCTTCAT 58.828 42.308 0.00 0.00 0.00 2.57
813 983 6.101442 ACCTACTACACTATCTAGAGCCTTCA 59.899 42.308 0.00 0.00 0.00 3.02
814 984 6.428771 CACCTACTACACTATCTAGAGCCTTC 59.571 46.154 0.00 0.00 0.00 3.46
815 985 6.126420 ACACCTACTACACTATCTAGAGCCTT 60.126 42.308 0.00 0.00 0.00 4.35
816 986 5.370289 ACACCTACTACACTATCTAGAGCCT 59.630 44.000 0.00 0.00 0.00 4.58
817 987 5.623169 ACACCTACTACACTATCTAGAGCC 58.377 45.833 0.00 0.00 0.00 4.70
818 988 6.425721 CAGACACCTACTACACTATCTAGAGC 59.574 46.154 0.00 0.00 0.00 4.09
819 989 6.425721 GCAGACACCTACTACACTATCTAGAG 59.574 46.154 0.00 0.00 0.00 2.43
820 990 6.126854 TGCAGACACCTACTACACTATCTAGA 60.127 42.308 0.00 0.00 0.00 2.43
821 991 6.056236 TGCAGACACCTACTACACTATCTAG 58.944 44.000 0.00 0.00 0.00 2.43
822 992 5.997843 TGCAGACACCTACTACACTATCTA 58.002 41.667 0.00 0.00 0.00 1.98
823 993 4.856509 TGCAGACACCTACTACACTATCT 58.143 43.478 0.00 0.00 0.00 1.98
824 994 4.036971 CCTGCAGACACCTACTACACTATC 59.963 50.000 17.39 0.00 0.00 2.08
825 995 3.954904 CCTGCAGACACCTACTACACTAT 59.045 47.826 17.39 0.00 0.00 2.12
826 996 3.009805 TCCTGCAGACACCTACTACACTA 59.990 47.826 17.39 0.00 0.00 2.74
827 997 2.171840 CCTGCAGACACCTACTACACT 58.828 52.381 17.39 0.00 0.00 3.55
828 998 2.164624 CTCCTGCAGACACCTACTACAC 59.835 54.545 17.39 0.00 0.00 2.90
829 999 2.041216 TCTCCTGCAGACACCTACTACA 59.959 50.000 17.39 0.00 0.00 2.74
830 1000 2.685897 CTCTCCTGCAGACACCTACTAC 59.314 54.545 17.39 0.00 0.00 2.73
831 1001 2.576648 TCTCTCCTGCAGACACCTACTA 59.423 50.000 17.39 0.00 0.00 1.82
832 1002 1.356059 TCTCTCCTGCAGACACCTACT 59.644 52.381 17.39 0.00 0.00 2.57
833 1003 1.748493 CTCTCTCCTGCAGACACCTAC 59.252 57.143 17.39 0.00 0.00 3.18
834 1004 1.341482 CCTCTCTCCTGCAGACACCTA 60.341 57.143 17.39 0.00 0.00 3.08
835 1005 0.614415 CCTCTCTCCTGCAGACACCT 60.614 60.000 17.39 0.00 0.00 4.00
836 1006 0.613292 TCCTCTCTCCTGCAGACACC 60.613 60.000 17.39 0.00 0.00 4.16
837 1007 0.530288 GTCCTCTCTCCTGCAGACAC 59.470 60.000 17.39 0.00 0.00 3.67
838 1008 0.962855 CGTCCTCTCTCCTGCAGACA 60.963 60.000 17.39 0.00 0.00 3.41
839 1009 0.678366 TCGTCCTCTCTCCTGCAGAC 60.678 60.000 17.39 1.40 0.00 3.51
840 1010 0.038310 TTCGTCCTCTCTCCTGCAGA 59.962 55.000 17.39 0.00 0.00 4.26
841 1011 0.172352 GTTCGTCCTCTCTCCTGCAG 59.828 60.000 6.78 6.78 0.00 4.41
842 1012 0.251386 AGTTCGTCCTCTCTCCTGCA 60.251 55.000 0.00 0.00 0.00 4.41
843 1013 0.172352 CAGTTCGTCCTCTCTCCTGC 59.828 60.000 0.00 0.00 0.00 4.85
844 1014 0.814457 CCAGTTCGTCCTCTCTCCTG 59.186 60.000 0.00 0.00 0.00 3.86
845 1015 0.699399 TCCAGTTCGTCCTCTCTCCT 59.301 55.000 0.00 0.00 0.00 3.69
846 1016 0.812549 GTCCAGTTCGTCCTCTCTCC 59.187 60.000 0.00 0.00 0.00 3.71
952 1132 3.742882 CGACAGGGTATTGCATGTATCAG 59.257 47.826 0.00 0.00 0.00 2.90
1000 1181 3.298686 TCTCTGACGGATGAGTACCAT 57.701 47.619 0.00 0.00 38.43 3.55
1032 1213 2.646175 ATGGTACGTCCTGCGCAGT 61.646 57.895 33.75 19.93 46.11 4.40
1260 1458 2.185310 CTAACCCAGAGGCCAACGCT 62.185 60.000 5.01 0.00 36.11 5.07
1598 1797 3.470567 GCGGAGTTGTGCGAGACG 61.471 66.667 0.00 0.00 40.58 4.18
1654 1853 1.026718 GCCCCCTGAACTGAATGTCG 61.027 60.000 0.00 0.00 0.00 4.35
1661 1860 3.901797 GACCACGCCCCCTGAACTG 62.902 68.421 0.00 0.00 0.00 3.16
1901 2211 2.352388 GTAATGTACCTGCGCTTCCAA 58.648 47.619 9.73 0.00 0.00 3.53
1978 2289 7.602517 AAACTAATGAAACTTCCTCTCATCG 57.397 36.000 0.00 0.00 0.00 3.84
2290 3371 8.686334 TGAAAGAAAAAGTCAGCAAACTTCTAT 58.314 29.630 4.44 0.00 38.52 1.98
2347 3430 3.432186 CCGGCAGGATTGATTCAGACTTA 60.432 47.826 0.00 0.00 41.02 2.24
2437 3521 7.095355 ACGAAAACTAACTACGATGAAAAGCAT 60.095 33.333 0.00 0.00 40.77 3.79
2608 3697 3.179265 CTACAGCGCCGGTGTTCG 61.179 66.667 27.73 14.83 41.72 3.95
2619 3708 1.807573 GCAGTGACGCTCCTACAGC 60.808 63.158 0.00 0.00 45.85 4.40
2695 3784 1.017177 GTACGCATCGCAACCAGGAA 61.017 55.000 0.00 0.00 0.00 3.36
2712 3801 2.146724 CGGGGCCATGGAGGATGTA 61.147 63.158 18.40 0.00 41.22 2.29
2771 3860 3.084039 GTTGGCATCAACCTTCTCATCA 58.916 45.455 0.00 0.00 45.50 3.07
2792 3881 0.439985 CGCGTTCTTCATCACAGGTG 59.560 55.000 0.00 0.00 0.00 4.00
2793 3882 0.033504 ACGCGTTCTTCATCACAGGT 59.966 50.000 5.58 0.00 0.00 4.00
2850 3939 2.354821 AGTTTTTGAACTGACGCAGGAC 59.645 45.455 10.80 5.58 35.51 3.85
2872 3961 2.984471 TGCGTTCTCTTGTTCATCGTAC 59.016 45.455 0.00 0.00 0.00 3.67
2913 4003 4.698583 ACAAAGATCAATCTCTTGCTGC 57.301 40.909 0.00 0.00 35.67 5.25
2916 4006 5.536554 TCGAACAAAGATCAATCTCTTGC 57.463 39.130 0.00 0.00 35.67 4.01
2920 4010 8.896826 GTTCTTTTTCGAACAAAGATCAATCTC 58.103 33.333 23.63 12.28 42.15 2.75
2929 4019 6.910972 GGGAGTAAGTTCTTTTTCGAACAAAG 59.089 38.462 18.66 18.66 44.37 2.77
2936 4026 6.147328 CCAACTAGGGAGTAAGTTCTTTTTCG 59.853 42.308 0.00 0.00 33.72 3.46
2937 4027 7.436430 CCAACTAGGGAGTAAGTTCTTTTTC 57.564 40.000 0.00 0.00 33.72 2.29
3261 4383 2.264480 CGCCGTGATGTCCCAGAA 59.736 61.111 0.00 0.00 0.00 3.02
3282 4409 6.514404 CAACTAGTTGCCTCGATCCATCGA 62.514 50.000 22.03 11.07 43.87 3.59
3294 4421 2.484264 CCTACAAGCACAACTAGTTGCC 59.516 50.000 30.97 22.62 44.03 4.52
3301 4428 3.665190 GAACTAGCCTACAAGCACAACT 58.335 45.455 0.00 0.00 34.23 3.16
3322 4449 4.789095 TCTTTTTGGACTTTCTCGTTCG 57.211 40.909 0.00 0.00 0.00 3.95
3341 4468 0.179171 CGTTGTCGCAGTACCGATCT 60.179 55.000 0.00 0.00 39.67 2.75
3342 4469 0.179181 TCGTTGTCGCAGTACCGATC 60.179 55.000 0.00 0.00 39.67 3.69
3372 4499 4.320202 CCACATATGCACGTATTTAAGGCC 60.320 45.833 1.58 0.00 0.00 5.19
3384 4511 6.019152 CGTAAACACTTTACCACATATGCAC 58.981 40.000 1.58 0.00 41.87 4.57
3405 4532 3.120373 TGCGACGAACACTGTATTACGTA 60.120 43.478 0.00 0.00 34.26 3.57
3406 4533 2.245096 GCGACGAACACTGTATTACGT 58.755 47.619 0.00 0.00 36.71 3.57
3474 4601 4.664677 AGACGTCTGGCGCACACC 62.665 66.667 19.30 0.00 46.11 4.16
3490 4617 1.374252 GTGTACCGGGCACTGACAG 60.374 63.158 19.87 0.00 36.31 3.51
3501 4628 4.695217 ATTTGCTGTATTTGGTGTACCG 57.305 40.909 0.00 0.00 39.43 4.02
3517 4644 1.465187 GGCGTTCTGGTTCGTATTTGC 60.465 52.381 0.00 0.00 0.00 3.68
3555 4682 1.300971 CTGCATGTGCTACTTGGCGT 61.301 55.000 6.55 0.00 42.66 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.