Multiple sequence alignment - TraesCS4D01G251100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G251100 chr4D 100.000 2586 0 0 1 2586 419345591 419348176 0.000000e+00 4776
1 TraesCS4D01G251100 chr4D 95.595 908 39 1 1680 2586 475974696 475975603 0.000000e+00 1454
2 TraesCS4D01G251100 chr4D 94.627 912 42 4 1682 2586 496237943 496238854 0.000000e+00 1406
3 TraesCS4D01G251100 chr4D 89.873 711 51 6 407 1111 8171598 8170903 0.000000e+00 894
4 TraesCS4D01G251100 chr7B 85.448 1986 211 48 411 2367 569887968 569889904 0.000000e+00 1995
5 TraesCS4D01G251100 chr7B 90.966 1273 99 9 411 1679 621407007 621408267 0.000000e+00 1700
6 TraesCS4D01G251100 chr3D 93.637 1273 61 10 410 1679 382523087 382521832 0.000000e+00 1884
7 TraesCS4D01G251100 chr3D 96.035 908 34 2 1680 2586 323336137 323337043 0.000000e+00 1476
8 TraesCS4D01G251100 chr3D 93.435 914 52 6 1679 2586 31132922 31132011 0.000000e+00 1349
9 TraesCS4D01G251100 chr3D 90.157 701 57 5 408 1104 569883394 569884086 0.000000e+00 902
10 TraesCS4D01G251100 chr7D 91.504 1283 90 11 403 1679 126988435 126989704 0.000000e+00 1748
11 TraesCS4D01G251100 chr5D 91.713 1267 81 10 410 1674 179972956 179971712 0.000000e+00 1736
12 TraesCS4D01G251100 chr5D 94.621 911 43 3 1680 2586 434409517 434408609 0.000000e+00 1406
13 TraesCS4D01G251100 chr2B 91.308 1277 98 10 404 1679 143956014 143957278 0.000000e+00 1731
14 TraesCS4D01G251100 chr2B 90.721 1304 96 13 395 1679 411488833 411490130 0.000000e+00 1714
15 TraesCS4D01G251100 chr2B 90.365 1287 101 11 404 1679 144024787 144026061 0.000000e+00 1668
16 TraesCS4D01G251100 chr2B 90.132 1287 83 20 408 1677 412290870 412292129 0.000000e+00 1633
17 TraesCS4D01G251100 chr4B 91.087 1279 93 14 409 1679 671183085 671184350 0.000000e+00 1711
18 TraesCS4D01G251100 chr4B 89.137 313 23 4 101 411 517490922 517491225 1.880000e-101 379
19 TraesCS4D01G251100 chr6B 90.015 1292 92 18 410 1679 689092931 689091655 0.000000e+00 1637
20 TraesCS4D01G251100 chr6B 87.991 1274 85 29 407 1672 636474227 636475440 0.000000e+00 1443
21 TraesCS4D01G251100 chrUn 89.938 1292 93 18 410 1679 377105580 377104304 0.000000e+00 1631
22 TraesCS4D01G251100 chr1D 94.469 922 44 4 1671 2586 379737858 379738778 0.000000e+00 1413
23 TraesCS4D01G251100 chr1D 93.311 912 52 7 1682 2586 284996435 284997344 0.000000e+00 1338
24 TraesCS4D01G251100 chr2D 94.645 915 38 4 1680 2586 55937875 55938786 0.000000e+00 1408
25 TraesCS4D01G251100 chr2D 93.013 916 57 6 1674 2586 621373090 621374001 0.000000e+00 1330
26 TraesCS4D01G251100 chr3A 91.525 885 63 8 796 1679 670668409 670669282 0.000000e+00 1208
27 TraesCS4D01G251100 chr4A 83.575 414 62 6 1 411 45137463 45137053 1.450000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G251100 chr4D 419345591 419348176 2585 False 4776 4776 100.000 1 2586 1 chr4D.!!$F1 2585
1 TraesCS4D01G251100 chr4D 475974696 475975603 907 False 1454 1454 95.595 1680 2586 1 chr4D.!!$F2 906
2 TraesCS4D01G251100 chr4D 496237943 496238854 911 False 1406 1406 94.627 1682 2586 1 chr4D.!!$F3 904
3 TraesCS4D01G251100 chr4D 8170903 8171598 695 True 894 894 89.873 407 1111 1 chr4D.!!$R1 704
4 TraesCS4D01G251100 chr7B 569887968 569889904 1936 False 1995 1995 85.448 411 2367 1 chr7B.!!$F1 1956
5 TraesCS4D01G251100 chr7B 621407007 621408267 1260 False 1700 1700 90.966 411 1679 1 chr7B.!!$F2 1268
6 TraesCS4D01G251100 chr3D 382521832 382523087 1255 True 1884 1884 93.637 410 1679 1 chr3D.!!$R2 1269
7 TraesCS4D01G251100 chr3D 323336137 323337043 906 False 1476 1476 96.035 1680 2586 1 chr3D.!!$F1 906
8 TraesCS4D01G251100 chr3D 31132011 31132922 911 True 1349 1349 93.435 1679 2586 1 chr3D.!!$R1 907
9 TraesCS4D01G251100 chr3D 569883394 569884086 692 False 902 902 90.157 408 1104 1 chr3D.!!$F2 696
10 TraesCS4D01G251100 chr7D 126988435 126989704 1269 False 1748 1748 91.504 403 1679 1 chr7D.!!$F1 1276
11 TraesCS4D01G251100 chr5D 179971712 179972956 1244 True 1736 1736 91.713 410 1674 1 chr5D.!!$R1 1264
12 TraesCS4D01G251100 chr5D 434408609 434409517 908 True 1406 1406 94.621 1680 2586 1 chr5D.!!$R2 906
13 TraesCS4D01G251100 chr2B 143956014 143957278 1264 False 1731 1731 91.308 404 1679 1 chr2B.!!$F1 1275
14 TraesCS4D01G251100 chr2B 411488833 411490130 1297 False 1714 1714 90.721 395 1679 1 chr2B.!!$F3 1284
15 TraesCS4D01G251100 chr2B 144024787 144026061 1274 False 1668 1668 90.365 404 1679 1 chr2B.!!$F2 1275
16 TraesCS4D01G251100 chr2B 412290870 412292129 1259 False 1633 1633 90.132 408 1677 1 chr2B.!!$F4 1269
17 TraesCS4D01G251100 chr4B 671183085 671184350 1265 False 1711 1711 91.087 409 1679 1 chr4B.!!$F2 1270
18 TraesCS4D01G251100 chr6B 689091655 689092931 1276 True 1637 1637 90.015 410 1679 1 chr6B.!!$R1 1269
19 TraesCS4D01G251100 chr6B 636474227 636475440 1213 False 1443 1443 87.991 407 1672 1 chr6B.!!$F1 1265
20 TraesCS4D01G251100 chrUn 377104304 377105580 1276 True 1631 1631 89.938 410 1679 1 chrUn.!!$R1 1269
21 TraesCS4D01G251100 chr1D 379737858 379738778 920 False 1413 1413 94.469 1671 2586 1 chr1D.!!$F2 915
22 TraesCS4D01G251100 chr1D 284996435 284997344 909 False 1338 1338 93.311 1682 2586 1 chr1D.!!$F1 904
23 TraesCS4D01G251100 chr2D 55937875 55938786 911 False 1408 1408 94.645 1680 2586 1 chr2D.!!$F1 906
24 TraesCS4D01G251100 chr2D 621373090 621374001 911 False 1330 1330 93.013 1674 2586 1 chr2D.!!$F2 912
25 TraesCS4D01G251100 chr3A 670668409 670669282 873 False 1208 1208 91.525 796 1679 1 chr3A.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.030638 CCTTTGCCCAACACAGAACG 59.969 55.0 0.0 0.0 0.0 3.95 F
302 303 0.033796 CATGGAGGGGTGTGCAGATT 60.034 55.0 0.0 0.0 0.0 2.40 F
323 324 0.104120 CGTCACACCCTCACAAGTCA 59.896 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1087 1148 0.036388 GGTCTCCCAGCATGACGAAA 60.036 55.000 0.0 0.0 39.69 3.46 R
1411 1484 1.004745 CCTCTAAGCTCCCCAAAAGCA 59.995 52.381 0.0 0.0 42.35 3.91 R
1659 1732 1.294068 ACTTCCTCCCCCTGTATGCTA 59.706 52.381 0.0 0.0 0.00 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.685728 GGGAAGAAACAACCATATAGCTCT 58.314 41.667 0.00 0.00 0.00 4.09
24 25 5.529060 GGGAAGAAACAACCATATAGCTCTG 59.471 44.000 0.00 0.00 0.00 3.35
25 26 5.008118 GGAAGAAACAACCATATAGCTCTGC 59.992 44.000 0.00 0.00 0.00 4.26
26 27 5.365021 AGAAACAACCATATAGCTCTGCT 57.635 39.130 0.00 0.00 43.41 4.24
27 28 5.363939 AGAAACAACCATATAGCTCTGCTC 58.636 41.667 0.00 0.00 40.44 4.26
28 29 3.760580 ACAACCATATAGCTCTGCTCC 57.239 47.619 0.00 0.00 40.44 4.70
29 30 2.370189 ACAACCATATAGCTCTGCTCCC 59.630 50.000 0.00 0.00 40.44 4.30
30 31 1.261480 ACCATATAGCTCTGCTCCCG 58.739 55.000 0.00 0.00 40.44 5.14
31 32 1.261480 CCATATAGCTCTGCTCCCGT 58.739 55.000 0.00 0.00 40.44 5.28
32 33 2.225041 ACCATATAGCTCTGCTCCCGTA 60.225 50.000 0.00 0.00 40.44 4.02
33 34 3.027412 CCATATAGCTCTGCTCCCGTAT 58.973 50.000 0.00 0.00 40.44 3.06
34 35 3.067461 CCATATAGCTCTGCTCCCGTATC 59.933 52.174 0.00 0.00 40.44 2.24
35 36 1.551452 ATAGCTCTGCTCCCGTATCC 58.449 55.000 0.00 0.00 40.44 2.59
36 37 0.478942 TAGCTCTGCTCCCGTATCCT 59.521 55.000 0.00 0.00 40.44 3.24
37 38 1.112315 AGCTCTGCTCCCGTATCCTG 61.112 60.000 0.00 0.00 30.62 3.86
38 39 1.395826 GCTCTGCTCCCGTATCCTGT 61.396 60.000 0.00 0.00 0.00 4.00
39 40 1.982660 CTCTGCTCCCGTATCCTGTA 58.017 55.000 0.00 0.00 0.00 2.74
40 41 1.609555 CTCTGCTCCCGTATCCTGTAC 59.390 57.143 0.00 0.00 0.00 2.90
41 42 0.311165 CTGCTCCCGTATCCTGTACG 59.689 60.000 0.92 0.92 40.30 3.67
50 51 4.201523 TCCTGTACGGAGCCAACA 57.798 55.556 2.31 0.00 36.69 3.33
51 52 1.669440 TCCTGTACGGAGCCAACAC 59.331 57.895 2.31 0.00 36.69 3.32
52 53 1.375523 CCTGTACGGAGCCAACACC 60.376 63.158 2.31 0.00 33.16 4.16
58 59 2.047179 GGAGCCAACACCGACCTC 60.047 66.667 0.00 0.00 0.00 3.85
59 60 2.741092 GAGCCAACACCGACCTCA 59.259 61.111 0.00 0.00 0.00 3.86
60 61 1.668151 GAGCCAACACCGACCTCAC 60.668 63.158 0.00 0.00 0.00 3.51
61 62 2.668550 GCCAACACCGACCTCACC 60.669 66.667 0.00 0.00 0.00 4.02
62 63 2.825982 CCAACACCGACCTCACCA 59.174 61.111 0.00 0.00 0.00 4.17
63 64 1.147376 CCAACACCGACCTCACCAA 59.853 57.895 0.00 0.00 0.00 3.67
64 65 0.884704 CCAACACCGACCTCACCAAG 60.885 60.000 0.00 0.00 0.00 3.61
65 66 0.105964 CAACACCGACCTCACCAAGA 59.894 55.000 0.00 0.00 0.00 3.02
66 67 1.056660 AACACCGACCTCACCAAGAT 58.943 50.000 0.00 0.00 0.00 2.40
67 68 0.321671 ACACCGACCTCACCAAGATG 59.678 55.000 0.00 0.00 0.00 2.90
68 69 0.608130 CACCGACCTCACCAAGATGA 59.392 55.000 0.00 0.00 0.00 2.92
69 70 1.208052 CACCGACCTCACCAAGATGAT 59.792 52.381 0.00 0.00 0.00 2.45
70 71 1.208052 ACCGACCTCACCAAGATGATG 59.792 52.381 0.00 0.00 0.00 3.07
71 72 1.293924 CGACCTCACCAAGATGATGC 58.706 55.000 0.00 0.00 0.00 3.91
72 73 1.405933 CGACCTCACCAAGATGATGCA 60.406 52.381 0.00 0.00 0.00 3.96
73 74 2.715046 GACCTCACCAAGATGATGCAA 58.285 47.619 0.00 0.00 0.00 4.08
74 75 2.421424 GACCTCACCAAGATGATGCAAC 59.579 50.000 0.00 0.00 0.00 4.17
75 76 2.224843 ACCTCACCAAGATGATGCAACA 60.225 45.455 0.00 0.00 0.00 3.33
76 77 3.021695 CCTCACCAAGATGATGCAACAT 58.978 45.455 9.49 9.49 0.00 2.71
77 78 3.066342 CCTCACCAAGATGATGCAACATC 59.934 47.826 24.98 24.98 44.65 3.06
96 97 5.114785 CATCGGAGAGGTCTACAACATAG 57.885 47.826 0.00 0.00 43.63 2.23
97 98 2.950309 TCGGAGAGGTCTACAACATAGC 59.050 50.000 0.00 0.00 0.00 2.97
98 99 2.952978 CGGAGAGGTCTACAACATAGCT 59.047 50.000 0.00 0.00 0.00 3.32
99 100 4.135306 CGGAGAGGTCTACAACATAGCTA 58.865 47.826 0.00 0.00 0.00 3.32
100 101 4.214545 CGGAGAGGTCTACAACATAGCTAG 59.785 50.000 0.00 0.00 0.00 3.42
101 102 4.022676 GGAGAGGTCTACAACATAGCTAGC 60.023 50.000 6.62 6.62 0.00 3.42
102 103 4.537751 AGAGGTCTACAACATAGCTAGCA 58.462 43.478 18.83 3.19 0.00 3.49
103 104 4.339814 AGAGGTCTACAACATAGCTAGCAC 59.660 45.833 18.83 1.50 0.00 4.40
104 105 4.023980 AGGTCTACAACATAGCTAGCACA 58.976 43.478 18.83 4.27 0.00 4.57
105 106 4.466370 AGGTCTACAACATAGCTAGCACAA 59.534 41.667 18.83 1.78 0.00 3.33
106 107 4.806247 GGTCTACAACATAGCTAGCACAAG 59.194 45.833 18.83 6.22 0.00 3.16
107 108 5.394224 GGTCTACAACATAGCTAGCACAAGA 60.394 44.000 18.83 5.11 0.00 3.02
108 109 6.100004 GTCTACAACATAGCTAGCACAAGAA 58.900 40.000 18.83 0.00 0.00 2.52
109 110 6.590292 GTCTACAACATAGCTAGCACAAGAAA 59.410 38.462 18.83 0.00 0.00 2.52
110 111 5.869753 ACAACATAGCTAGCACAAGAAAG 57.130 39.130 18.83 2.13 0.00 2.62
111 112 5.551233 ACAACATAGCTAGCACAAGAAAGA 58.449 37.500 18.83 0.00 0.00 2.52
112 113 5.641209 ACAACATAGCTAGCACAAGAAAGAG 59.359 40.000 18.83 0.00 0.00 2.85
113 114 4.187694 ACATAGCTAGCACAAGAAAGAGC 58.812 43.478 18.83 0.00 0.00 4.09
114 115 1.719600 AGCTAGCACAAGAAAGAGCG 58.280 50.000 18.83 0.00 35.09 5.03
115 116 1.001406 AGCTAGCACAAGAAAGAGCGT 59.999 47.619 18.83 0.00 35.09 5.07
116 117 1.127582 GCTAGCACAAGAAAGAGCGTG 59.872 52.381 10.63 0.00 0.00 5.34
117 118 4.522460 GCACAAGAAAGAGCGTGC 57.478 55.556 0.00 0.00 46.85 5.34
120 121 1.220529 CACAAGAAAGAGCGTGCTCA 58.779 50.000 22.70 0.00 44.99 4.26
121 122 1.599071 CACAAGAAAGAGCGTGCTCAA 59.401 47.619 22.70 0.00 44.99 3.02
122 123 2.032054 CACAAGAAAGAGCGTGCTCAAA 59.968 45.455 22.70 0.00 44.99 2.69
123 124 2.289002 ACAAGAAAGAGCGTGCTCAAAG 59.711 45.455 22.70 9.25 44.99 2.77
124 125 0.871057 AGAAAGAGCGTGCTCAAAGC 59.129 50.000 22.70 9.63 44.99 3.51
142 143 3.665544 CAACCTTTGCCCAACACAG 57.334 52.632 0.00 0.00 0.00 3.66
143 144 1.110442 CAACCTTTGCCCAACACAGA 58.890 50.000 0.00 0.00 0.00 3.41
144 145 1.480137 CAACCTTTGCCCAACACAGAA 59.520 47.619 0.00 0.00 0.00 3.02
145 146 1.111277 ACCTTTGCCCAACACAGAAC 58.889 50.000 0.00 0.00 0.00 3.01
146 147 0.030638 CCTTTGCCCAACACAGAACG 59.969 55.000 0.00 0.00 0.00 3.95
147 148 0.594796 CTTTGCCCAACACAGAACGC 60.595 55.000 0.00 0.00 0.00 4.84
148 149 1.034838 TTTGCCCAACACAGAACGCT 61.035 50.000 0.00 0.00 0.00 5.07
149 150 1.444119 TTGCCCAACACAGAACGCTC 61.444 55.000 0.00 0.00 0.00 5.03
150 151 2.617274 GCCCAACACAGAACGCTCC 61.617 63.158 0.00 0.00 0.00 4.70
151 152 1.966451 CCCAACACAGAACGCTCCC 60.966 63.158 0.00 0.00 0.00 4.30
152 153 1.227823 CCAACACAGAACGCTCCCA 60.228 57.895 0.00 0.00 0.00 4.37
153 154 0.817634 CCAACACAGAACGCTCCCAA 60.818 55.000 0.00 0.00 0.00 4.12
154 155 0.307760 CAACACAGAACGCTCCCAAC 59.692 55.000 0.00 0.00 0.00 3.77
155 156 0.107410 AACACAGAACGCTCCCAACA 60.107 50.000 0.00 0.00 0.00 3.33
156 157 0.108585 ACACAGAACGCTCCCAACAT 59.891 50.000 0.00 0.00 0.00 2.71
157 158 0.518636 CACAGAACGCTCCCAACATG 59.481 55.000 0.00 0.00 0.00 3.21
158 159 0.108585 ACAGAACGCTCCCAACATGT 59.891 50.000 0.00 0.00 0.00 3.21
159 160 0.518636 CAGAACGCTCCCAACATGTG 59.481 55.000 0.00 0.00 0.00 3.21
160 161 0.108585 AGAACGCTCCCAACATGTGT 59.891 50.000 0.00 0.00 0.00 3.72
161 162 0.517316 GAACGCTCCCAACATGTGTC 59.483 55.000 0.00 0.00 0.00 3.67
162 163 0.179032 AACGCTCCCAACATGTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
163 164 0.603707 ACGCTCCCAACATGTGTCAG 60.604 55.000 0.00 0.00 0.00 3.51
164 165 1.878775 GCTCCCAACATGTGTCAGC 59.121 57.895 0.00 1.09 0.00 4.26
165 166 0.890542 GCTCCCAACATGTGTCAGCA 60.891 55.000 0.00 0.00 32.53 4.41
166 167 1.608055 CTCCCAACATGTGTCAGCAA 58.392 50.000 0.00 0.00 0.00 3.91
167 168 1.538512 CTCCCAACATGTGTCAGCAAG 59.461 52.381 0.00 0.00 0.00 4.01
168 169 0.038892 CCCAACATGTGTCAGCAAGC 60.039 55.000 0.00 0.00 0.00 4.01
169 170 0.038892 CCAACATGTGTCAGCAAGCC 60.039 55.000 0.00 0.00 0.00 4.35
170 171 0.956633 CAACATGTGTCAGCAAGCCT 59.043 50.000 0.00 0.00 0.00 4.58
171 172 1.338973 CAACATGTGTCAGCAAGCCTT 59.661 47.619 0.00 0.00 0.00 4.35
172 173 0.956633 ACATGTGTCAGCAAGCCTTG 59.043 50.000 0.00 0.00 0.00 3.61
173 174 0.956633 CATGTGTCAGCAAGCCTTGT 59.043 50.000 6.28 0.00 0.00 3.16
174 175 2.153645 CATGTGTCAGCAAGCCTTGTA 58.846 47.619 6.28 0.00 0.00 2.41
175 176 2.340210 TGTGTCAGCAAGCCTTGTAA 57.660 45.000 6.28 0.00 0.00 2.41
176 177 1.946768 TGTGTCAGCAAGCCTTGTAAC 59.053 47.619 6.28 3.07 0.00 2.50
177 178 2.222027 GTGTCAGCAAGCCTTGTAACT 58.778 47.619 6.28 0.00 0.00 2.24
178 179 2.031682 GTGTCAGCAAGCCTTGTAACTG 60.032 50.000 6.28 5.36 0.00 3.16
179 180 1.068954 GTCAGCAAGCCTTGTAACTGC 60.069 52.381 6.28 0.00 0.00 4.40
180 181 1.202806 TCAGCAAGCCTTGTAACTGCT 60.203 47.619 6.28 0.00 36.79 4.24
181 182 1.198637 CAGCAAGCCTTGTAACTGCTC 59.801 52.381 6.28 0.00 33.36 4.26
182 183 0.166814 GCAAGCCTTGTAACTGCTCG 59.833 55.000 6.28 0.00 33.36 5.03
183 184 0.798776 CAAGCCTTGTAACTGCTCGG 59.201 55.000 0.00 0.00 33.36 4.63
184 185 0.396811 AAGCCTTGTAACTGCTCGGT 59.603 50.000 0.00 0.00 33.36 4.69
185 186 0.037232 AGCCTTGTAACTGCTCGGTC 60.037 55.000 0.00 0.00 0.00 4.79
186 187 0.037232 GCCTTGTAACTGCTCGGTCT 60.037 55.000 0.00 0.00 0.00 3.85
187 188 1.203994 GCCTTGTAACTGCTCGGTCTA 59.796 52.381 0.00 0.00 0.00 2.59
188 189 2.353406 GCCTTGTAACTGCTCGGTCTAA 60.353 50.000 0.00 0.00 0.00 2.10
189 190 3.512680 CCTTGTAACTGCTCGGTCTAAG 58.487 50.000 0.00 0.00 0.00 2.18
190 191 2.649331 TGTAACTGCTCGGTCTAAGC 57.351 50.000 0.00 0.00 40.26 3.09
191 192 2.168496 TGTAACTGCTCGGTCTAAGCT 58.832 47.619 0.00 0.00 40.50 3.74
192 193 2.094700 TGTAACTGCTCGGTCTAAGCTG 60.095 50.000 0.00 0.00 42.45 4.24
193 194 0.390472 AACTGCTCGGTCTAAGCTGC 60.390 55.000 0.00 0.00 41.00 5.25
194 195 1.520342 CTGCTCGGTCTAAGCTGCC 60.520 63.158 0.00 0.00 40.50 4.85
195 196 2.230994 CTGCTCGGTCTAAGCTGCCA 62.231 60.000 0.00 0.00 40.50 4.92
196 197 1.520342 GCTCGGTCTAAGCTGCCAG 60.520 63.158 0.00 0.00 36.80 4.85
197 198 1.949847 GCTCGGTCTAAGCTGCCAGA 61.950 60.000 0.00 0.00 36.80 3.86
198 199 0.102120 CTCGGTCTAAGCTGCCAGAG 59.898 60.000 0.00 0.00 0.00 3.35
199 200 0.612174 TCGGTCTAAGCTGCCAGAGT 60.612 55.000 0.00 0.00 0.00 3.24
200 201 0.459237 CGGTCTAAGCTGCCAGAGTG 60.459 60.000 0.00 0.00 0.00 3.51
201 202 0.898320 GGTCTAAGCTGCCAGAGTGA 59.102 55.000 0.00 0.00 0.00 3.41
202 203 1.276421 GGTCTAAGCTGCCAGAGTGAA 59.724 52.381 0.00 0.00 0.00 3.18
203 204 2.342179 GTCTAAGCTGCCAGAGTGAAC 58.658 52.381 0.00 0.00 0.00 3.18
204 205 2.028567 GTCTAAGCTGCCAGAGTGAACT 60.029 50.000 0.00 0.00 0.00 3.01
205 206 2.028658 TCTAAGCTGCCAGAGTGAACTG 60.029 50.000 0.00 0.00 37.61 3.16
206 207 0.471617 AAGCTGCCAGAGTGAACTGT 59.528 50.000 0.00 0.00 36.30 3.55
207 208 1.342074 AGCTGCCAGAGTGAACTGTA 58.658 50.000 0.00 0.00 36.30 2.74
208 209 1.274728 AGCTGCCAGAGTGAACTGTAG 59.725 52.381 0.00 0.00 36.30 2.74
209 210 1.719600 CTGCCAGAGTGAACTGTAGC 58.280 55.000 0.00 0.00 36.30 3.58
210 211 1.001293 CTGCCAGAGTGAACTGTAGCA 59.999 52.381 1.18 1.18 36.30 3.49
211 212 1.270305 TGCCAGAGTGAACTGTAGCAC 60.270 52.381 0.00 5.80 36.30 4.40
212 213 1.941668 GCCAGAGTGAACTGTAGCACC 60.942 57.143 9.30 3.41 35.67 5.01
213 214 1.344438 CCAGAGTGAACTGTAGCACCA 59.656 52.381 9.30 0.00 35.67 4.17
214 215 2.408050 CAGAGTGAACTGTAGCACCAC 58.592 52.381 9.30 0.00 35.67 4.16
215 216 2.039418 AGAGTGAACTGTAGCACCACA 58.961 47.619 9.30 0.00 35.67 4.17
216 217 2.634940 AGAGTGAACTGTAGCACCACAT 59.365 45.455 9.30 0.00 35.67 3.21
217 218 2.996621 GAGTGAACTGTAGCACCACATC 59.003 50.000 9.30 0.00 35.67 3.06
218 219 2.368548 AGTGAACTGTAGCACCACATCA 59.631 45.455 9.30 0.00 35.67 3.07
219 220 2.738846 GTGAACTGTAGCACCACATCAG 59.261 50.000 3.19 0.00 0.00 2.90
220 221 2.632512 TGAACTGTAGCACCACATCAGA 59.367 45.455 0.00 0.00 0.00 3.27
221 222 2.751166 ACTGTAGCACCACATCAGAC 57.249 50.000 0.00 0.00 0.00 3.51
222 223 1.067565 ACTGTAGCACCACATCAGACG 60.068 52.381 0.00 0.00 0.00 4.18
223 224 0.246360 TGTAGCACCACATCAGACGG 59.754 55.000 0.00 0.00 0.00 4.79
224 225 0.460284 GTAGCACCACATCAGACGGG 60.460 60.000 0.00 0.00 0.00 5.28
225 226 1.613317 TAGCACCACATCAGACGGGG 61.613 60.000 0.00 0.00 0.00 5.73
226 227 3.068881 CACCACATCAGACGGGGT 58.931 61.111 0.00 0.00 0.00 4.95
227 228 1.374947 CACCACATCAGACGGGGTT 59.625 57.895 0.00 0.00 0.00 4.11
228 229 0.955428 CACCACATCAGACGGGGTTG 60.955 60.000 0.00 0.00 0.00 3.77
229 230 2.040544 CCACATCAGACGGGGTTGC 61.041 63.158 0.00 0.00 0.00 4.17
230 231 2.040544 CACATCAGACGGGGTTGCC 61.041 63.158 0.00 0.00 0.00 4.52
231 232 2.819595 CATCAGACGGGGTTGCCG 60.820 66.667 0.00 0.00 0.00 5.69
232 233 3.000819 ATCAGACGGGGTTGCCGA 61.001 61.111 0.00 0.00 34.52 5.54
233 234 2.589157 ATCAGACGGGGTTGCCGAA 61.589 57.895 0.00 0.00 34.52 4.30
234 235 2.798148 ATCAGACGGGGTTGCCGAAC 62.798 60.000 0.00 0.00 34.52 3.95
243 244 3.193471 GTTGCCGAACCAATGGTTG 57.807 52.632 23.90 14.06 46.95 3.77
244 245 0.943835 GTTGCCGAACCAATGGTTGC 60.944 55.000 23.90 20.13 46.95 4.17
245 246 2.126502 GCCGAACCAATGGTTGCG 60.127 61.111 23.90 22.38 46.95 4.85
246 247 2.566010 CCGAACCAATGGTTGCGG 59.434 61.111 27.97 27.97 46.95 5.69
247 248 1.969064 CCGAACCAATGGTTGCGGA 60.969 57.895 32.65 0.00 46.95 5.54
248 249 1.312371 CCGAACCAATGGTTGCGGAT 61.312 55.000 32.65 10.33 46.95 4.18
249 250 1.374560 CGAACCAATGGTTGCGGATA 58.625 50.000 23.90 0.00 46.95 2.59
250 251 1.063469 CGAACCAATGGTTGCGGATAC 59.937 52.381 23.90 5.03 46.95 2.24
262 263 4.642542 GGATACGAGCGGACGCCC 62.643 72.222 13.63 0.00 43.17 6.13
263 264 3.896133 GATACGAGCGGACGCCCA 61.896 66.667 13.63 0.00 43.17 5.36
264 265 3.420214 GATACGAGCGGACGCCCAA 62.420 63.158 13.63 0.00 43.17 4.12
265 266 3.426117 ATACGAGCGGACGCCCAAG 62.426 63.158 13.63 5.05 43.17 3.61
273 274 3.998672 GACGCCCAAGACCCACGA 61.999 66.667 0.00 0.00 0.00 4.35
274 275 4.309950 ACGCCCAAGACCCACGAC 62.310 66.667 0.00 0.00 0.00 4.34
277 278 3.307906 CCCAAGACCCACGACCGA 61.308 66.667 0.00 0.00 0.00 4.69
278 279 2.738480 CCAAGACCCACGACCGAA 59.262 61.111 0.00 0.00 0.00 4.30
279 280 1.374252 CCAAGACCCACGACCGAAG 60.374 63.158 0.00 0.00 0.00 3.79
280 281 2.027625 CAAGACCCACGACCGAAGC 61.028 63.158 0.00 0.00 0.00 3.86
281 282 3.569049 AAGACCCACGACCGAAGCG 62.569 63.158 0.00 0.00 0.00 4.68
286 287 3.853330 CACGACCGAAGCGCCATG 61.853 66.667 2.29 0.00 0.00 3.66
288 289 4.812476 CGACCGAAGCGCCATGGA 62.812 66.667 18.40 0.00 0.00 3.41
289 290 2.892425 GACCGAAGCGCCATGGAG 60.892 66.667 18.40 14.87 0.00 3.86
290 291 4.473520 ACCGAAGCGCCATGGAGG 62.474 66.667 18.40 7.48 41.84 4.30
298 299 4.365111 GCCATGGAGGGGTGTGCA 62.365 66.667 18.40 0.00 38.09 4.57
299 300 2.044650 CCATGGAGGGGTGTGCAG 60.045 66.667 5.56 0.00 0.00 4.41
300 301 2.605607 CCATGGAGGGGTGTGCAGA 61.606 63.158 5.56 0.00 0.00 4.26
301 302 1.611419 CATGGAGGGGTGTGCAGAT 59.389 57.895 0.00 0.00 0.00 2.90
302 303 0.033796 CATGGAGGGGTGTGCAGATT 60.034 55.000 0.00 0.00 0.00 2.40
303 304 0.257039 ATGGAGGGGTGTGCAGATTC 59.743 55.000 0.00 0.00 0.00 2.52
304 305 1.077429 GGAGGGGTGTGCAGATTCC 60.077 63.158 0.00 0.00 0.00 3.01
305 306 1.450312 GAGGGGTGTGCAGATTCCG 60.450 63.158 0.00 0.00 0.00 4.30
306 307 2.185310 GAGGGGTGTGCAGATTCCGT 62.185 60.000 0.00 0.00 0.00 4.69
307 308 1.745489 GGGGTGTGCAGATTCCGTC 60.745 63.158 0.00 0.00 0.00 4.79
308 309 1.003839 GGGTGTGCAGATTCCGTCA 60.004 57.895 0.00 0.00 0.00 4.35
309 310 1.298859 GGGTGTGCAGATTCCGTCAC 61.299 60.000 0.00 0.00 0.00 3.67
310 311 0.602638 GGTGTGCAGATTCCGTCACA 60.603 55.000 0.00 0.00 37.14 3.58
311 312 2.912986 TGTGCAGATTCCGTCACAC 58.087 52.632 0.00 0.00 34.87 3.82
312 313 0.602638 TGTGCAGATTCCGTCACACC 60.603 55.000 0.00 0.00 36.10 4.16
313 314 1.003839 TGCAGATTCCGTCACACCC 60.004 57.895 0.00 0.00 0.00 4.61
314 315 1.296715 GCAGATTCCGTCACACCCT 59.703 57.895 0.00 0.00 0.00 4.34
315 316 0.741221 GCAGATTCCGTCACACCCTC 60.741 60.000 0.00 0.00 0.00 4.30
316 317 0.608130 CAGATTCCGTCACACCCTCA 59.392 55.000 0.00 0.00 0.00 3.86
317 318 0.608640 AGATTCCGTCACACCCTCAC 59.391 55.000 0.00 0.00 0.00 3.51
318 319 0.320374 GATTCCGTCACACCCTCACA 59.680 55.000 0.00 0.00 0.00 3.58
319 320 0.762418 ATTCCGTCACACCCTCACAA 59.238 50.000 0.00 0.00 0.00 3.33
320 321 0.105964 TTCCGTCACACCCTCACAAG 59.894 55.000 0.00 0.00 0.00 3.16
321 322 1.046472 TCCGTCACACCCTCACAAGT 61.046 55.000 0.00 0.00 0.00 3.16
322 323 0.600255 CCGTCACACCCTCACAAGTC 60.600 60.000 0.00 0.00 0.00 3.01
323 324 0.104120 CGTCACACCCTCACAAGTCA 59.896 55.000 0.00 0.00 0.00 3.41
324 325 1.583054 GTCACACCCTCACAAGTCAC 58.417 55.000 0.00 0.00 0.00 3.67
325 326 1.134521 GTCACACCCTCACAAGTCACA 60.135 52.381 0.00 0.00 0.00 3.58
326 327 1.768275 TCACACCCTCACAAGTCACAT 59.232 47.619 0.00 0.00 0.00 3.21
327 328 1.875514 CACACCCTCACAAGTCACATG 59.124 52.381 0.00 0.00 0.00 3.21
328 329 1.768275 ACACCCTCACAAGTCACATGA 59.232 47.619 0.00 0.00 0.00 3.07
329 330 2.172505 ACACCCTCACAAGTCACATGAA 59.827 45.455 0.00 0.00 0.00 2.57
330 331 2.810274 CACCCTCACAAGTCACATGAAG 59.190 50.000 0.00 0.00 0.00 3.02
331 332 1.808945 CCCTCACAAGTCACATGAAGC 59.191 52.381 0.00 0.00 0.00 3.86
332 333 1.808945 CCTCACAAGTCACATGAAGCC 59.191 52.381 0.00 0.00 0.00 4.35
333 334 2.497138 CTCACAAGTCACATGAAGCCA 58.503 47.619 0.00 0.00 0.00 4.75
334 335 2.483106 CTCACAAGTCACATGAAGCCAG 59.517 50.000 0.00 0.00 0.00 4.85
335 336 2.104622 TCACAAGTCACATGAAGCCAGA 59.895 45.455 0.00 0.00 0.00 3.86
336 337 2.483106 CACAAGTCACATGAAGCCAGAG 59.517 50.000 0.00 0.00 0.00 3.35
337 338 1.467734 CAAGTCACATGAAGCCAGAGC 59.532 52.381 0.00 0.00 40.32 4.09
347 348 3.096791 GCCAGAGCTTGACGATGC 58.903 61.111 0.00 0.00 35.50 3.91
348 349 1.449246 GCCAGAGCTTGACGATGCT 60.449 57.895 0.00 0.00 42.82 3.79
352 353 2.973899 AGCTTGACGATGCTCCGT 59.026 55.556 3.76 3.76 46.43 4.69
353 354 1.446792 AGCTTGACGATGCTCCGTG 60.447 57.895 8.56 0.00 43.49 4.94
354 355 3.084579 CTTGACGATGCTCCGTGC 58.915 61.111 8.56 2.48 43.49 5.34
355 356 2.434185 TTGACGATGCTCCGTGCC 60.434 61.111 8.56 0.00 43.49 5.01
356 357 4.794439 TGACGATGCTCCGTGCCG 62.794 66.667 8.56 0.00 43.49 5.69
357 358 4.492160 GACGATGCTCCGTGCCGA 62.492 66.667 8.56 0.00 43.49 5.54
358 359 4.498520 ACGATGCTCCGTGCCGAG 62.499 66.667 3.33 0.00 41.70 4.63
373 374 4.120331 GAGGCGGGTGCATGCAAC 62.120 66.667 27.92 27.92 45.35 4.17
374 375 4.972733 AGGCGGGTGCATGCAACA 62.973 61.111 35.07 4.87 45.35 3.33
375 376 4.722855 GGCGGGTGCATGCAACAC 62.723 66.667 35.07 25.76 45.35 3.32
376 377 3.976000 GCGGGTGCATGCAACACA 61.976 61.111 35.07 4.00 42.15 3.72
377 378 2.726909 CGGGTGCATGCAACACAA 59.273 55.556 35.07 3.15 39.87 3.33
378 379 1.661197 CGGGTGCATGCAACACAAC 60.661 57.895 35.07 17.88 39.87 3.32
379 380 1.440893 GGGTGCATGCAACACAACA 59.559 52.632 35.07 1.45 39.87 3.33
380 381 0.179089 GGGTGCATGCAACACAACAA 60.179 50.000 35.07 0.62 39.87 2.83
381 382 1.210870 GGTGCATGCAACACAACAAG 58.789 50.000 30.55 0.00 39.87 3.16
382 383 1.210870 GTGCATGCAACACAACAAGG 58.789 50.000 24.58 0.00 37.96 3.61
383 384 0.530211 TGCATGCAACACAACAAGGC 60.530 50.000 20.30 0.00 0.00 4.35
384 385 0.530211 GCATGCAACACAACAAGGCA 60.530 50.000 14.21 0.00 39.03 4.75
385 386 1.874739 GCATGCAACACAACAAGGCAT 60.875 47.619 14.21 0.00 45.33 4.40
386 387 2.157834 ATGCAACACAACAAGGCATG 57.842 45.000 0.00 0.00 43.03 4.06
387 388 0.530211 TGCAACACAACAAGGCATGC 60.530 50.000 9.90 9.90 0.00 4.06
388 389 0.530211 GCAACACAACAAGGCATGCA 60.530 50.000 21.36 0.00 32.80 3.96
389 390 1.937278 CAACACAACAAGGCATGCAA 58.063 45.000 21.36 0.00 0.00 4.08
390 391 1.862201 CAACACAACAAGGCATGCAAG 59.138 47.619 21.36 10.82 0.00 4.01
391 392 1.113788 ACACAACAAGGCATGCAAGT 58.886 45.000 21.36 11.51 0.00 3.16
392 393 1.202440 ACACAACAAGGCATGCAAGTG 60.202 47.619 21.36 18.23 35.62 3.16
393 394 1.067364 CACAACAAGGCATGCAAGTGA 59.933 47.619 21.36 0.00 32.97 3.41
394 395 1.338973 ACAACAAGGCATGCAAGTGAG 59.661 47.619 21.36 12.44 0.00 3.51
395 396 1.338973 CAACAAGGCATGCAAGTGAGT 59.661 47.619 21.36 5.85 0.00 3.41
396 397 1.696063 ACAAGGCATGCAAGTGAGTT 58.304 45.000 21.36 0.00 0.00 3.01
397 398 1.338973 ACAAGGCATGCAAGTGAGTTG 59.661 47.619 21.36 12.25 39.41 3.16
398 399 1.610038 CAAGGCATGCAAGTGAGTTGA 59.390 47.619 21.36 0.00 38.60 3.18
399 400 1.531423 AGGCATGCAAGTGAGTTGAG 58.469 50.000 21.36 0.00 38.60 3.02
400 401 1.202855 AGGCATGCAAGTGAGTTGAGT 60.203 47.619 21.36 0.00 38.60 3.41
401 402 2.038952 AGGCATGCAAGTGAGTTGAGTA 59.961 45.455 21.36 0.00 38.60 2.59
402 403 2.417933 GGCATGCAAGTGAGTTGAGTAG 59.582 50.000 21.36 0.00 38.60 2.57
519 526 0.792640 CATCGCACGCTTCTCAAAGT 59.207 50.000 0.00 0.00 34.79 2.66
524 531 1.795768 CACGCTTCTCAAAGTAGCCA 58.204 50.000 0.77 0.00 35.52 4.75
549 557 0.886490 CTGGCTCACTGGAAACGCTT 60.886 55.000 0.00 0.00 0.00 4.68
654 663 0.464373 GAGATGGGAAATCTGGCGCA 60.464 55.000 10.83 0.00 0.00 6.09
694 705 1.779061 GCCTCACCCCCTTTCACTCA 61.779 60.000 0.00 0.00 0.00 3.41
760 774 3.576356 CGGCGGCTGCGATTTCAT 61.576 61.111 12.29 0.00 44.10 2.57
885 936 1.162698 ACGTCGTCCTCATCTTCGAA 58.837 50.000 0.00 0.00 34.23 3.71
1087 1148 3.213206 TGTTCATGCACCAGAGAGTTT 57.787 42.857 0.00 0.00 0.00 2.66
1369 1440 6.005823 TCATTCACAACATGTTCAGGAGATT 58.994 36.000 8.48 0.00 0.00 2.40
1549 1622 5.163581 ACACTTTTCATGGCTTGATATGCTC 60.164 40.000 3.72 0.00 33.34 4.26
1634 1707 6.051717 GCAATAGATGGTACTCATGTCACTT 58.948 40.000 2.07 0.00 35.97 3.16
1659 1732 3.158676 GAGTTCCTAGGTCACAGTCTGT 58.841 50.000 9.08 0.00 0.00 3.41
1847 1925 1.268845 GCCTCTACTTGACTAGCTCGC 60.269 57.143 0.00 0.00 0.00 5.03
2128 2216 1.182667 CAGGTGTCTCCGATGGTACA 58.817 55.000 0.00 0.00 42.58 2.90
2390 2479 5.859521 AACGTATGTTGTTATGCGGTTTA 57.140 34.783 0.00 0.00 39.90 2.01
2460 2562 5.190677 TGAGTCTCGGTCATGTCTACATAA 58.809 41.667 0.00 0.00 34.26 1.90
2566 2668 1.960612 GGAGTCCCGGATGAGATCG 59.039 63.158 0.73 0.00 0.00 3.69
2567 2669 0.537600 GGAGTCCCGGATGAGATCGA 60.538 60.000 0.73 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.749462 AGCAGAGCTATATGGTTGTTTCTT 58.251 37.500 0.00 0.00 36.99 2.52
6 7 4.455606 GGAGCAGAGCTATATGGTTGTTT 58.544 43.478 0.00 0.00 39.88 2.83
11 12 1.261480 CGGGAGCAGAGCTATATGGT 58.739 55.000 0.00 0.00 39.88 3.55
13 14 3.067461 GGATACGGGAGCAGAGCTATATG 59.933 52.174 0.00 0.00 39.88 1.78
14 15 3.053245 AGGATACGGGAGCAGAGCTATAT 60.053 47.826 0.00 0.00 40.32 0.86
15 16 2.309162 AGGATACGGGAGCAGAGCTATA 59.691 50.000 0.00 0.00 40.32 1.31
16 17 1.076350 AGGATACGGGAGCAGAGCTAT 59.924 52.381 0.00 0.00 40.32 2.97
17 18 0.478942 AGGATACGGGAGCAGAGCTA 59.521 55.000 0.00 0.00 40.32 3.32
18 19 1.112315 CAGGATACGGGAGCAGAGCT 61.112 60.000 0.00 0.00 42.61 4.09
19 20 1.365633 CAGGATACGGGAGCAGAGC 59.634 63.158 0.00 0.00 46.39 4.09
20 21 1.609555 GTACAGGATACGGGAGCAGAG 59.390 57.143 0.00 0.00 46.39 3.35
21 22 1.688772 GTACAGGATACGGGAGCAGA 58.311 55.000 0.00 0.00 46.39 4.26
22 23 0.311165 CGTACAGGATACGGGAGCAG 59.689 60.000 0.00 0.00 46.39 4.24
23 24 2.411535 CGTACAGGATACGGGAGCA 58.588 57.895 0.00 0.00 46.39 4.26
34 35 1.375523 GGTGTTGGCTCCGTACAGG 60.376 63.158 0.00 0.00 42.97 4.00
35 36 1.736645 CGGTGTTGGCTCCGTACAG 60.737 63.158 0.00 0.00 44.14 2.74
36 37 2.340809 CGGTGTTGGCTCCGTACA 59.659 61.111 0.00 0.00 44.14 2.90
41 42 2.047179 GAGGTCGGTGTTGGCTCC 60.047 66.667 0.00 0.00 0.00 4.70
42 43 1.668151 GTGAGGTCGGTGTTGGCTC 60.668 63.158 0.00 0.00 0.00 4.70
43 44 2.426023 GTGAGGTCGGTGTTGGCT 59.574 61.111 0.00 0.00 0.00 4.75
44 45 2.668550 GGTGAGGTCGGTGTTGGC 60.669 66.667 0.00 0.00 0.00 4.52
45 46 0.884704 CTTGGTGAGGTCGGTGTTGG 60.885 60.000 0.00 0.00 0.00 3.77
46 47 0.105964 TCTTGGTGAGGTCGGTGTTG 59.894 55.000 0.00 0.00 0.00 3.33
47 48 1.056660 ATCTTGGTGAGGTCGGTGTT 58.943 50.000 0.00 0.00 0.00 3.32
48 49 0.321671 CATCTTGGTGAGGTCGGTGT 59.678 55.000 0.00 0.00 0.00 4.16
49 50 0.608130 TCATCTTGGTGAGGTCGGTG 59.392 55.000 0.00 0.00 0.00 4.94
50 51 1.208052 CATCATCTTGGTGAGGTCGGT 59.792 52.381 0.00 0.00 27.35 4.69
51 52 1.945387 CATCATCTTGGTGAGGTCGG 58.055 55.000 0.00 0.00 27.35 4.79
52 53 1.293924 GCATCATCTTGGTGAGGTCG 58.706 55.000 0.00 0.00 32.79 4.79
53 54 2.408271 TGCATCATCTTGGTGAGGTC 57.592 50.000 0.00 0.00 32.79 3.85
54 55 2.224843 TGTTGCATCATCTTGGTGAGGT 60.225 45.455 0.00 0.00 32.79 3.85
55 56 2.439409 TGTTGCATCATCTTGGTGAGG 58.561 47.619 0.00 0.00 27.35 3.86
56 57 3.242641 CGATGTTGCATCATCTTGGTGAG 60.243 47.826 27.04 12.07 41.17 3.51
57 58 2.679336 CGATGTTGCATCATCTTGGTGA 59.321 45.455 27.04 0.00 41.17 4.02
58 59 2.223409 CCGATGTTGCATCATCTTGGTG 60.223 50.000 27.04 15.52 41.17 4.17
59 60 2.019249 CCGATGTTGCATCATCTTGGT 58.981 47.619 27.04 1.68 41.17 3.67
60 61 2.289820 CTCCGATGTTGCATCATCTTGG 59.710 50.000 27.04 22.61 41.17 3.61
61 62 3.200483 TCTCCGATGTTGCATCATCTTG 58.800 45.455 27.04 20.12 41.17 3.02
62 63 3.464907 CTCTCCGATGTTGCATCATCTT 58.535 45.455 27.04 3.03 41.17 2.40
63 64 2.224233 CCTCTCCGATGTTGCATCATCT 60.224 50.000 27.04 3.71 41.17 2.90
64 65 2.141517 CCTCTCCGATGTTGCATCATC 58.858 52.381 22.57 22.57 40.29 2.92
65 66 1.487976 ACCTCTCCGATGTTGCATCAT 59.512 47.619 10.03 10.03 0.00 2.45
66 67 0.904649 ACCTCTCCGATGTTGCATCA 59.095 50.000 0.00 0.00 0.00 3.07
67 68 1.137872 AGACCTCTCCGATGTTGCATC 59.862 52.381 0.00 0.00 0.00 3.91
68 69 1.198713 AGACCTCTCCGATGTTGCAT 58.801 50.000 0.00 0.00 0.00 3.96
69 70 1.476891 GTAGACCTCTCCGATGTTGCA 59.523 52.381 0.00 0.00 0.00 4.08
70 71 1.476891 TGTAGACCTCTCCGATGTTGC 59.523 52.381 0.00 0.00 0.00 4.17
71 72 3.056821 TGTTGTAGACCTCTCCGATGTTG 60.057 47.826 0.00 0.00 0.00 3.33
72 73 3.162666 TGTTGTAGACCTCTCCGATGTT 58.837 45.455 0.00 0.00 0.00 2.71
73 74 2.803956 TGTTGTAGACCTCTCCGATGT 58.196 47.619 0.00 0.00 0.00 3.06
74 75 4.557695 GCTATGTTGTAGACCTCTCCGATG 60.558 50.000 0.00 0.00 0.00 3.84
75 76 3.570550 GCTATGTTGTAGACCTCTCCGAT 59.429 47.826 0.00 0.00 0.00 4.18
76 77 2.950309 GCTATGTTGTAGACCTCTCCGA 59.050 50.000 0.00 0.00 0.00 4.55
77 78 2.952978 AGCTATGTTGTAGACCTCTCCG 59.047 50.000 0.00 0.00 0.00 4.63
78 79 4.022676 GCTAGCTATGTTGTAGACCTCTCC 60.023 50.000 7.70 0.00 0.00 3.71
79 80 4.580995 TGCTAGCTATGTTGTAGACCTCTC 59.419 45.833 17.23 0.00 0.00 3.20
80 81 4.339814 GTGCTAGCTATGTTGTAGACCTCT 59.660 45.833 17.23 0.00 0.00 3.69
81 82 4.098044 TGTGCTAGCTATGTTGTAGACCTC 59.902 45.833 17.23 0.00 0.00 3.85
82 83 4.023980 TGTGCTAGCTATGTTGTAGACCT 58.976 43.478 17.23 0.00 0.00 3.85
83 84 4.386867 TGTGCTAGCTATGTTGTAGACC 57.613 45.455 17.23 0.00 0.00 3.85
84 85 5.651530 TCTTGTGCTAGCTATGTTGTAGAC 58.348 41.667 17.23 1.81 0.00 2.59
85 86 5.914898 TCTTGTGCTAGCTATGTTGTAGA 57.085 39.130 17.23 4.79 0.00 2.59
86 87 6.813649 TCTTTCTTGTGCTAGCTATGTTGTAG 59.186 38.462 17.23 5.06 0.00 2.74
87 88 6.697395 TCTTTCTTGTGCTAGCTATGTTGTA 58.303 36.000 17.23 0.00 0.00 2.41
88 89 5.551233 TCTTTCTTGTGCTAGCTATGTTGT 58.449 37.500 17.23 0.00 0.00 3.32
89 90 5.447010 GCTCTTTCTTGTGCTAGCTATGTTG 60.447 44.000 17.23 1.75 0.00 3.33
90 91 4.633565 GCTCTTTCTTGTGCTAGCTATGTT 59.366 41.667 17.23 0.00 0.00 2.71
91 92 4.187694 GCTCTTTCTTGTGCTAGCTATGT 58.812 43.478 17.23 0.00 0.00 2.29
92 93 3.244814 CGCTCTTTCTTGTGCTAGCTATG 59.755 47.826 17.23 7.58 0.00 2.23
93 94 3.118956 ACGCTCTTTCTTGTGCTAGCTAT 60.119 43.478 17.23 0.00 0.00 2.97
94 95 2.231478 ACGCTCTTTCTTGTGCTAGCTA 59.769 45.455 17.23 1.87 0.00 3.32
95 96 1.001406 ACGCTCTTTCTTGTGCTAGCT 59.999 47.619 17.23 0.00 0.00 3.32
96 97 1.127582 CACGCTCTTTCTTGTGCTAGC 59.872 52.381 8.10 8.10 0.00 3.42
101 102 1.220529 TGAGCACGCTCTTTCTTGTG 58.779 50.000 19.17 0.00 43.12 3.33
102 103 1.953559 TTGAGCACGCTCTTTCTTGT 58.046 45.000 19.17 0.00 43.12 3.16
103 104 2.913613 CTTTGAGCACGCTCTTTCTTG 58.086 47.619 19.17 1.69 43.12 3.02
104 105 1.265365 GCTTTGAGCACGCTCTTTCTT 59.735 47.619 19.17 0.00 41.89 2.52
105 106 0.871057 GCTTTGAGCACGCTCTTTCT 59.129 50.000 19.17 0.00 41.89 2.52
106 107 3.374682 GCTTTGAGCACGCTCTTTC 57.625 52.632 19.17 3.57 41.89 2.62
124 125 1.110442 TCTGTGTTGGGCAAAGGTTG 58.890 50.000 0.00 0.00 33.20 3.77
125 126 1.480545 GTTCTGTGTTGGGCAAAGGTT 59.519 47.619 0.00 0.00 33.20 3.50
126 127 1.111277 GTTCTGTGTTGGGCAAAGGT 58.889 50.000 0.00 0.00 33.20 3.50
127 128 0.030638 CGTTCTGTGTTGGGCAAAGG 59.969 55.000 0.00 0.00 33.20 3.11
128 129 0.594796 GCGTTCTGTGTTGGGCAAAG 60.595 55.000 0.00 0.00 33.66 2.77
129 130 1.034838 AGCGTTCTGTGTTGGGCAAA 61.035 50.000 0.00 0.00 0.00 3.68
130 131 1.444119 GAGCGTTCTGTGTTGGGCAA 61.444 55.000 0.00 0.00 0.00 4.52
131 132 1.891919 GAGCGTTCTGTGTTGGGCA 60.892 57.895 0.00 0.00 0.00 5.36
132 133 2.617274 GGAGCGTTCTGTGTTGGGC 61.617 63.158 0.00 0.00 0.00 5.36
133 134 1.966451 GGGAGCGTTCTGTGTTGGG 60.966 63.158 0.00 0.00 0.00 4.12
134 135 0.817634 TTGGGAGCGTTCTGTGTTGG 60.818 55.000 0.00 0.00 0.00 3.77
135 136 0.307760 GTTGGGAGCGTTCTGTGTTG 59.692 55.000 0.00 0.00 0.00 3.33
136 137 0.107410 TGTTGGGAGCGTTCTGTGTT 60.107 50.000 0.00 0.00 0.00 3.32
137 138 0.108585 ATGTTGGGAGCGTTCTGTGT 59.891 50.000 0.00 0.00 0.00 3.72
138 139 0.518636 CATGTTGGGAGCGTTCTGTG 59.481 55.000 0.00 0.00 0.00 3.66
139 140 0.108585 ACATGTTGGGAGCGTTCTGT 59.891 50.000 0.00 0.00 0.00 3.41
140 141 0.518636 CACATGTTGGGAGCGTTCTG 59.481 55.000 0.00 0.00 0.00 3.02
141 142 0.108585 ACACATGTTGGGAGCGTTCT 59.891 50.000 0.00 0.00 0.00 3.01
142 143 0.517316 GACACATGTTGGGAGCGTTC 59.483 55.000 0.00 0.00 0.00 3.95
143 144 0.179032 TGACACATGTTGGGAGCGTT 60.179 50.000 0.00 0.00 0.00 4.84
144 145 0.603707 CTGACACATGTTGGGAGCGT 60.604 55.000 0.00 0.00 0.00 5.07
145 146 1.915614 GCTGACACATGTTGGGAGCG 61.916 60.000 0.00 0.00 0.00 5.03
146 147 0.890542 TGCTGACACATGTTGGGAGC 60.891 55.000 0.00 2.19 35.21 4.70
147 148 1.538512 CTTGCTGACACATGTTGGGAG 59.461 52.381 0.00 0.00 0.00 4.30
148 149 1.608055 CTTGCTGACACATGTTGGGA 58.392 50.000 0.00 0.00 0.00 4.37
149 150 0.038892 GCTTGCTGACACATGTTGGG 60.039 55.000 0.00 0.00 0.00 4.12
150 151 0.038892 GGCTTGCTGACACATGTTGG 60.039 55.000 0.00 0.00 0.00 3.77
151 152 0.956633 AGGCTTGCTGACACATGTTG 59.043 50.000 0.00 0.00 0.00 3.33
152 153 1.338973 CAAGGCTTGCTGACACATGTT 59.661 47.619 15.25 0.00 0.00 2.71
153 154 0.956633 CAAGGCTTGCTGACACATGT 59.043 50.000 15.25 0.00 0.00 3.21
154 155 0.956633 ACAAGGCTTGCTGACACATG 59.043 50.000 26.45 0.17 0.00 3.21
155 156 2.554032 GTTACAAGGCTTGCTGACACAT 59.446 45.455 26.45 7.51 0.00 3.21
156 157 1.946768 GTTACAAGGCTTGCTGACACA 59.053 47.619 26.45 0.65 0.00 3.72
157 158 2.031682 CAGTTACAAGGCTTGCTGACAC 60.032 50.000 26.45 15.12 0.00 3.67
158 159 2.221169 CAGTTACAAGGCTTGCTGACA 58.779 47.619 26.45 4.70 0.00 3.58
159 160 1.068954 GCAGTTACAAGGCTTGCTGAC 60.069 52.381 27.05 21.68 0.00 3.51
160 161 1.202806 AGCAGTTACAAGGCTTGCTGA 60.203 47.619 27.05 13.36 33.21 4.26
161 162 1.198637 GAGCAGTTACAAGGCTTGCTG 59.801 52.381 26.45 23.67 38.15 4.41
162 163 1.528129 GAGCAGTTACAAGGCTTGCT 58.472 50.000 26.45 17.62 38.15 3.91
163 164 0.166814 CGAGCAGTTACAAGGCTTGC 59.833 55.000 26.45 12.78 38.15 4.01
164 165 0.798776 CCGAGCAGTTACAAGGCTTG 59.201 55.000 25.06 25.06 38.15 4.01
165 166 0.396811 ACCGAGCAGTTACAAGGCTT 59.603 50.000 0.00 0.00 38.15 4.35
166 167 0.037232 GACCGAGCAGTTACAAGGCT 60.037 55.000 0.00 0.00 41.35 4.58
167 168 0.037232 AGACCGAGCAGTTACAAGGC 60.037 55.000 0.00 0.00 0.00 4.35
168 169 3.512680 CTTAGACCGAGCAGTTACAAGG 58.487 50.000 0.00 0.00 0.00 3.61
169 170 2.924290 GCTTAGACCGAGCAGTTACAAG 59.076 50.000 0.00 0.00 39.89 3.16
170 171 2.561419 AGCTTAGACCGAGCAGTTACAA 59.439 45.455 0.00 0.00 42.56 2.41
171 172 2.094700 CAGCTTAGACCGAGCAGTTACA 60.095 50.000 0.00 0.00 42.56 2.41
172 173 2.531206 CAGCTTAGACCGAGCAGTTAC 58.469 52.381 0.00 0.00 42.56 2.50
173 174 1.135083 GCAGCTTAGACCGAGCAGTTA 60.135 52.381 0.00 0.00 42.56 2.24
174 175 0.390472 GCAGCTTAGACCGAGCAGTT 60.390 55.000 0.00 0.00 42.56 3.16
175 176 1.216710 GCAGCTTAGACCGAGCAGT 59.783 57.895 0.00 0.00 42.56 4.40
176 177 1.520342 GGCAGCTTAGACCGAGCAG 60.520 63.158 0.00 0.00 42.56 4.24
177 178 2.230994 CTGGCAGCTTAGACCGAGCA 62.231 60.000 0.00 0.00 42.56 4.26
178 179 1.520342 CTGGCAGCTTAGACCGAGC 60.520 63.158 0.00 0.00 40.43 5.03
179 180 0.102120 CTCTGGCAGCTTAGACCGAG 59.898 60.000 10.34 0.00 0.00 4.63
180 181 0.612174 ACTCTGGCAGCTTAGACCGA 60.612 55.000 10.34 0.00 0.00 4.69
181 182 0.459237 CACTCTGGCAGCTTAGACCG 60.459 60.000 10.34 0.00 0.00 4.79
182 183 0.898320 TCACTCTGGCAGCTTAGACC 59.102 55.000 10.34 0.00 0.00 3.85
183 184 2.028567 AGTTCACTCTGGCAGCTTAGAC 60.029 50.000 10.34 5.88 0.00 2.59
184 185 2.028658 CAGTTCACTCTGGCAGCTTAGA 60.029 50.000 10.34 2.12 0.00 2.10
185 186 2.289320 ACAGTTCACTCTGGCAGCTTAG 60.289 50.000 10.34 4.76 39.48 2.18
186 187 1.694150 ACAGTTCACTCTGGCAGCTTA 59.306 47.619 10.34 0.00 39.48 3.09
187 188 0.471617 ACAGTTCACTCTGGCAGCTT 59.528 50.000 10.34 0.00 39.48 3.74
188 189 1.274728 CTACAGTTCACTCTGGCAGCT 59.725 52.381 10.34 0.00 39.48 4.24
189 190 1.719600 CTACAGTTCACTCTGGCAGC 58.280 55.000 10.34 0.00 39.48 5.25
190 191 1.001293 TGCTACAGTTCACTCTGGCAG 59.999 52.381 8.58 8.58 39.48 4.85
191 192 1.047801 TGCTACAGTTCACTCTGGCA 58.952 50.000 0.00 0.00 39.48 4.92
192 193 1.433534 GTGCTACAGTTCACTCTGGC 58.566 55.000 0.00 0.00 39.48 4.85
193 194 1.344438 TGGTGCTACAGTTCACTCTGG 59.656 52.381 5.84 0.00 39.48 3.86
194 195 2.224042 TGTGGTGCTACAGTTCACTCTG 60.224 50.000 5.84 0.00 40.80 3.35
195 196 2.039418 TGTGGTGCTACAGTTCACTCT 58.961 47.619 5.84 0.00 33.91 3.24
196 197 2.526304 TGTGGTGCTACAGTTCACTC 57.474 50.000 5.84 2.16 33.91 3.51
197 198 2.368548 TGATGTGGTGCTACAGTTCACT 59.631 45.455 5.84 0.00 33.44 3.41
198 199 2.738846 CTGATGTGGTGCTACAGTTCAC 59.261 50.000 0.00 0.00 33.44 3.18
199 200 2.632512 TCTGATGTGGTGCTACAGTTCA 59.367 45.455 0.00 0.00 33.44 3.18
200 201 2.996621 GTCTGATGTGGTGCTACAGTTC 59.003 50.000 0.00 0.00 33.44 3.01
201 202 2.610479 CGTCTGATGTGGTGCTACAGTT 60.610 50.000 0.00 0.00 33.44 3.16
202 203 1.067565 CGTCTGATGTGGTGCTACAGT 60.068 52.381 0.00 0.00 33.44 3.55
203 204 1.633561 CGTCTGATGTGGTGCTACAG 58.366 55.000 0.00 0.00 33.44 2.74
204 205 0.246360 CCGTCTGATGTGGTGCTACA 59.754 55.000 0.00 0.00 34.63 2.74
205 206 0.460284 CCCGTCTGATGTGGTGCTAC 60.460 60.000 0.00 0.00 0.00 3.58
206 207 1.613317 CCCCGTCTGATGTGGTGCTA 61.613 60.000 0.00 0.00 0.00 3.49
207 208 2.665000 CCCGTCTGATGTGGTGCT 59.335 61.111 0.00 0.00 0.00 4.40
208 209 2.436646 CCCCGTCTGATGTGGTGC 60.437 66.667 0.00 0.00 0.00 5.01
209 210 0.955428 CAACCCCGTCTGATGTGGTG 60.955 60.000 4.74 0.00 0.00 4.17
210 211 1.374947 CAACCCCGTCTGATGTGGT 59.625 57.895 0.00 0.00 0.00 4.16
211 212 2.040544 GCAACCCCGTCTGATGTGG 61.041 63.158 0.00 0.00 0.00 4.17
212 213 2.040544 GGCAACCCCGTCTGATGTG 61.041 63.158 0.00 0.00 0.00 3.21
213 214 2.351276 GGCAACCCCGTCTGATGT 59.649 61.111 0.00 0.00 0.00 3.06
225 226 0.943835 GCAACCATTGGTTCGGCAAC 60.944 55.000 18.27 1.02 43.05 4.17
226 227 1.365633 GCAACCATTGGTTCGGCAA 59.634 52.632 18.27 0.00 43.05 4.52
227 228 2.913765 CGCAACCATTGGTTCGGCA 61.914 57.895 23.20 0.00 43.05 5.69
228 229 2.126502 CGCAACCATTGGTTCGGC 60.127 61.111 18.27 17.51 43.05 5.54
229 230 1.312371 ATCCGCAACCATTGGTTCGG 61.312 55.000 31.90 31.90 43.05 4.30
230 231 1.063469 GTATCCGCAACCATTGGTTCG 59.937 52.381 18.27 20.99 43.05 3.95
231 232 1.063469 CGTATCCGCAACCATTGGTTC 59.937 52.381 18.27 11.91 43.05 3.62
233 234 0.250793 TCGTATCCGCAACCATTGGT 59.749 50.000 1.37 1.37 37.65 3.67
234 235 0.937304 CTCGTATCCGCAACCATTGG 59.063 55.000 0.00 0.00 0.00 3.16
235 236 0.304705 GCTCGTATCCGCAACCATTG 59.695 55.000 0.00 0.00 0.00 2.82
236 237 1.151777 CGCTCGTATCCGCAACCATT 61.152 55.000 0.00 0.00 0.00 3.16
237 238 1.591594 CGCTCGTATCCGCAACCAT 60.592 57.895 0.00 0.00 0.00 3.55
238 239 2.202690 CGCTCGTATCCGCAACCA 60.203 61.111 0.00 0.00 0.00 3.67
239 240 2.960129 CCGCTCGTATCCGCAACC 60.960 66.667 0.00 0.00 0.00 3.77
240 241 2.103538 TCCGCTCGTATCCGCAAC 59.896 61.111 0.00 0.00 0.00 4.17
241 242 2.103538 GTCCGCTCGTATCCGCAA 59.896 61.111 0.00 0.00 0.00 4.85
242 243 4.246206 CGTCCGCTCGTATCCGCA 62.246 66.667 0.00 0.00 0.00 5.69
244 245 4.977126 GGCGTCCGCTCGTATCCG 62.977 72.222 11.82 0.00 41.60 4.18
245 246 4.642542 GGGCGTCCGCTCGTATCC 62.643 72.222 11.82 0.00 41.60 2.59
246 247 3.420214 TTGGGCGTCCGCTCGTATC 62.420 63.158 11.82 0.00 46.35 2.24
247 248 3.426117 CTTGGGCGTCCGCTCGTAT 62.426 63.158 11.82 0.00 46.35 3.06
248 249 4.124351 CTTGGGCGTCCGCTCGTA 62.124 66.667 11.82 0.00 46.35 3.43
256 257 3.998672 TCGTGGGTCTTGGGCGTC 61.999 66.667 0.00 0.00 0.00 5.19
257 258 4.309950 GTCGTGGGTCTTGGGCGT 62.310 66.667 0.00 0.00 0.00 5.68
260 261 2.781595 CTTCGGTCGTGGGTCTTGGG 62.782 65.000 0.00 0.00 0.00 4.12
261 262 1.374252 CTTCGGTCGTGGGTCTTGG 60.374 63.158 0.00 0.00 0.00 3.61
262 263 2.027625 GCTTCGGTCGTGGGTCTTG 61.028 63.158 0.00 0.00 0.00 3.02
263 264 2.342648 GCTTCGGTCGTGGGTCTT 59.657 61.111 0.00 0.00 0.00 3.01
264 265 4.052229 CGCTTCGGTCGTGGGTCT 62.052 66.667 0.00 0.00 0.00 3.85
269 270 3.853330 CATGGCGCTTCGGTCGTG 61.853 66.667 7.64 0.00 0.00 4.35
271 272 4.812476 TCCATGGCGCTTCGGTCG 62.812 66.667 6.96 0.00 0.00 4.79
272 273 2.892425 CTCCATGGCGCTTCGGTC 60.892 66.667 6.96 0.00 0.00 4.79
273 274 4.473520 CCTCCATGGCGCTTCGGT 62.474 66.667 6.96 0.00 0.00 4.69
276 277 4.115199 ACCCCTCCATGGCGCTTC 62.115 66.667 6.96 0.00 0.00 3.86
277 278 4.431131 CACCCCTCCATGGCGCTT 62.431 66.667 6.96 0.00 0.00 4.68
281 282 4.365111 TGCACACCCCTCCATGGC 62.365 66.667 6.96 0.00 0.00 4.40
282 283 1.929860 ATCTGCACACCCCTCCATGG 61.930 60.000 4.97 4.97 0.00 3.66
283 284 0.033796 AATCTGCACACCCCTCCATG 60.034 55.000 0.00 0.00 0.00 3.66
284 285 0.257039 GAATCTGCACACCCCTCCAT 59.743 55.000 0.00 0.00 0.00 3.41
285 286 1.685224 GAATCTGCACACCCCTCCA 59.315 57.895 0.00 0.00 0.00 3.86
286 287 1.077429 GGAATCTGCACACCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
287 288 1.450312 CGGAATCTGCACACCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
288 289 2.185310 GACGGAATCTGCACACCCCT 62.185 60.000 0.00 0.00 0.00 4.79
289 290 1.745489 GACGGAATCTGCACACCCC 60.745 63.158 0.00 0.00 0.00 4.95
290 291 1.003839 TGACGGAATCTGCACACCC 60.004 57.895 0.00 0.00 0.00 4.61
291 292 0.602638 TGTGACGGAATCTGCACACC 60.603 55.000 12.83 0.00 36.44 4.16
292 293 2.912986 TGTGACGGAATCTGCACAC 58.087 52.632 12.83 12.03 36.44 3.82
293 294 0.602638 GGTGTGACGGAATCTGCACA 60.603 55.000 12.83 12.83 38.78 4.57
294 295 1.298859 GGGTGTGACGGAATCTGCAC 61.299 60.000 8.87 8.87 34.95 4.57
295 296 1.003839 GGGTGTGACGGAATCTGCA 60.004 57.895 0.00 0.00 0.00 4.41
296 297 0.741221 GAGGGTGTGACGGAATCTGC 60.741 60.000 0.00 0.00 0.00 4.26
297 298 0.608130 TGAGGGTGTGACGGAATCTG 59.392 55.000 0.00 0.00 0.00 2.90
298 299 0.608640 GTGAGGGTGTGACGGAATCT 59.391 55.000 0.00 0.00 0.00 2.40
299 300 0.320374 TGTGAGGGTGTGACGGAATC 59.680 55.000 0.00 0.00 0.00 2.52
300 301 0.762418 TTGTGAGGGTGTGACGGAAT 59.238 50.000 0.00 0.00 0.00 3.01
301 302 0.105964 CTTGTGAGGGTGTGACGGAA 59.894 55.000 0.00 0.00 0.00 4.30
302 303 1.046472 ACTTGTGAGGGTGTGACGGA 61.046 55.000 0.00 0.00 0.00 4.69
303 304 0.600255 GACTTGTGAGGGTGTGACGG 60.600 60.000 0.00 0.00 0.00 4.79
304 305 0.104120 TGACTTGTGAGGGTGTGACG 59.896 55.000 0.00 0.00 0.00 4.35
305 306 1.134521 TGTGACTTGTGAGGGTGTGAC 60.135 52.381 0.00 0.00 0.00 3.67
306 307 1.199615 TGTGACTTGTGAGGGTGTGA 58.800 50.000 0.00 0.00 0.00 3.58
307 308 1.875514 CATGTGACTTGTGAGGGTGTG 59.124 52.381 0.00 0.00 0.00 3.82
308 309 1.768275 TCATGTGACTTGTGAGGGTGT 59.232 47.619 0.00 0.00 0.00 4.16
309 310 2.549064 TCATGTGACTTGTGAGGGTG 57.451 50.000 0.00 0.00 0.00 4.61
310 311 2.811873 GCTTCATGTGACTTGTGAGGGT 60.812 50.000 0.00 0.00 0.00 4.34
311 312 1.808945 GCTTCATGTGACTTGTGAGGG 59.191 52.381 0.00 0.00 0.00 4.30
312 313 1.808945 GGCTTCATGTGACTTGTGAGG 59.191 52.381 0.00 0.00 0.00 3.86
313 314 2.483106 CTGGCTTCATGTGACTTGTGAG 59.517 50.000 0.00 0.57 0.00 3.51
314 315 2.104622 TCTGGCTTCATGTGACTTGTGA 59.895 45.455 0.00 0.00 0.00 3.58
315 316 2.483106 CTCTGGCTTCATGTGACTTGTG 59.517 50.000 0.00 0.00 0.00 3.33
316 317 2.775890 CTCTGGCTTCATGTGACTTGT 58.224 47.619 0.00 0.00 0.00 3.16
317 318 1.467734 GCTCTGGCTTCATGTGACTTG 59.532 52.381 0.00 0.00 35.22 3.16
318 319 1.818642 GCTCTGGCTTCATGTGACTT 58.181 50.000 0.00 0.00 35.22 3.01
319 320 3.547567 GCTCTGGCTTCATGTGACT 57.452 52.632 0.00 0.00 35.22 3.41
330 331 1.449246 AGCATCGTCAAGCTCTGGC 60.449 57.895 0.00 0.00 36.00 4.85
331 332 4.928398 AGCATCGTCAAGCTCTGG 57.072 55.556 0.00 0.00 36.00 3.86
335 336 1.446792 CACGGAGCATCGTCAAGCT 60.447 57.895 1.37 0.00 45.25 3.74
336 337 3.084579 CACGGAGCATCGTCAAGC 58.915 61.111 1.37 0.00 41.86 4.01
337 338 3.084579 GCACGGAGCATCGTCAAG 58.915 61.111 1.37 0.00 44.79 3.02
356 357 4.120331 GTTGCATGCACCCGCCTC 62.120 66.667 22.58 1.47 37.32 4.70
357 358 4.972733 TGTTGCATGCACCCGCCT 62.973 61.111 22.58 0.00 37.32 5.52
358 359 4.722855 GTGTTGCATGCACCCGCC 62.723 66.667 22.58 6.71 37.32 6.13
359 360 3.496875 TTGTGTTGCATGCACCCGC 62.497 57.895 22.58 20.08 36.11 6.13
360 361 1.661197 GTTGTGTTGCATGCACCCG 60.661 57.895 22.58 0.00 36.11 5.28
361 362 0.179089 TTGTTGTGTTGCATGCACCC 60.179 50.000 22.58 14.72 36.11 4.61
362 363 1.210870 CTTGTTGTGTTGCATGCACC 58.789 50.000 22.58 15.34 36.11 5.01
363 364 1.210870 CCTTGTTGTGTTGCATGCAC 58.789 50.000 22.58 16.00 37.37 4.57
364 365 0.530211 GCCTTGTTGTGTTGCATGCA 60.530 50.000 18.46 18.46 0.00 3.96
365 366 0.530211 TGCCTTGTTGTGTTGCATGC 60.530 50.000 11.82 11.82 0.00 4.06
366 367 2.157834 ATGCCTTGTTGTGTTGCATG 57.842 45.000 0.00 0.00 40.86 4.06
367 368 1.874739 GCATGCCTTGTTGTGTTGCAT 60.875 47.619 6.36 0.00 43.01 3.96
368 369 0.530211 GCATGCCTTGTTGTGTTGCA 60.530 50.000 6.36 0.00 36.23 4.08
369 370 0.530211 TGCATGCCTTGTTGTGTTGC 60.530 50.000 16.68 0.00 0.00 4.17
370 371 1.862201 CTTGCATGCCTTGTTGTGTTG 59.138 47.619 16.68 0.00 0.00 3.33
371 372 1.481772 ACTTGCATGCCTTGTTGTGTT 59.518 42.857 16.68 0.00 0.00 3.32
372 373 1.113788 ACTTGCATGCCTTGTTGTGT 58.886 45.000 16.68 0.00 0.00 3.72
373 374 1.067364 TCACTTGCATGCCTTGTTGTG 59.933 47.619 16.68 13.90 0.00 3.33
374 375 1.338973 CTCACTTGCATGCCTTGTTGT 59.661 47.619 16.68 1.99 0.00 3.32
375 376 1.338973 ACTCACTTGCATGCCTTGTTG 59.661 47.619 16.68 5.42 0.00 3.33
376 377 1.696063 ACTCACTTGCATGCCTTGTT 58.304 45.000 16.68 0.00 0.00 2.83
377 378 1.338973 CAACTCACTTGCATGCCTTGT 59.661 47.619 16.68 8.36 0.00 3.16
378 379 1.610038 TCAACTCACTTGCATGCCTTG 59.390 47.619 16.68 9.55 0.00 3.61
379 380 1.884579 CTCAACTCACTTGCATGCCTT 59.115 47.619 16.68 0.00 0.00 4.35
380 381 1.202855 ACTCAACTCACTTGCATGCCT 60.203 47.619 16.68 0.00 0.00 4.75
381 382 1.242076 ACTCAACTCACTTGCATGCC 58.758 50.000 16.68 0.00 0.00 4.40
382 383 3.124297 GTCTACTCAACTCACTTGCATGC 59.876 47.826 11.82 11.82 0.00 4.06
383 384 3.366121 CGTCTACTCAACTCACTTGCATG 59.634 47.826 0.00 0.00 0.00 4.06
384 385 3.579709 CGTCTACTCAACTCACTTGCAT 58.420 45.455 0.00 0.00 0.00 3.96
385 386 2.862530 GCGTCTACTCAACTCACTTGCA 60.863 50.000 0.00 0.00 0.00 4.08
386 387 1.721926 GCGTCTACTCAACTCACTTGC 59.278 52.381 0.00 0.00 0.00 4.01
387 388 2.029828 AGGCGTCTACTCAACTCACTTG 60.030 50.000 0.00 0.00 0.00 3.16
388 389 2.240279 AGGCGTCTACTCAACTCACTT 58.760 47.619 0.00 0.00 0.00 3.16
389 390 1.912417 AGGCGTCTACTCAACTCACT 58.088 50.000 0.00 0.00 0.00 3.41
390 391 2.097791 CCTAGGCGTCTACTCAACTCAC 59.902 54.545 0.00 0.00 0.00 3.51
391 392 2.366533 CCTAGGCGTCTACTCAACTCA 58.633 52.381 0.00 0.00 0.00 3.41
392 393 1.677052 CCCTAGGCGTCTACTCAACTC 59.323 57.143 2.05 0.00 0.00 3.01
393 394 1.765230 CCCTAGGCGTCTACTCAACT 58.235 55.000 2.05 0.00 0.00 3.16
394 395 0.102663 GCCCTAGGCGTCTACTCAAC 59.897 60.000 2.05 0.00 39.62 3.18
395 396 2.501492 GCCCTAGGCGTCTACTCAA 58.499 57.895 2.05 0.00 39.62 3.02
396 397 4.254721 GCCCTAGGCGTCTACTCA 57.745 61.111 2.05 0.00 39.62 3.41
549 557 0.389817 CGTGAGAAACTGCCGATCCA 60.390 55.000 0.00 0.00 0.00 3.41
694 705 1.497161 GGTAGTGGCTATGGGTGAGT 58.503 55.000 0.00 0.00 0.00 3.41
787 820 4.951963 GATCCGCCGCCTCTTCCG 62.952 72.222 0.00 0.00 0.00 4.30
885 936 4.410400 GGGTGCTGCTTACCGGCT 62.410 66.667 0.00 0.00 46.34 5.52
940 1001 4.022589 TCGATTCTATACCTTGCCTAACGG 60.023 45.833 0.00 0.00 0.00 4.44
941 1002 5.117355 TCGATTCTATACCTTGCCTAACG 57.883 43.478 0.00 0.00 0.00 3.18
942 1003 7.117956 GGAAATCGATTCTATACCTTGCCTAAC 59.882 40.741 11.83 0.00 38.18 2.34
943 1004 7.159372 GGAAATCGATTCTATACCTTGCCTAA 58.841 38.462 11.83 0.00 38.18 2.69
944 1005 6.295688 GGGAAATCGATTCTATACCTTGCCTA 60.296 42.308 11.83 0.00 38.18 3.93
945 1006 5.513267 GGGAAATCGATTCTATACCTTGCCT 60.513 44.000 11.83 0.00 38.18 4.75
946 1007 4.695928 GGGAAATCGATTCTATACCTTGCC 59.304 45.833 11.83 4.05 38.18 4.52
954 1015 5.050490 CGTTCAGTGGGAAATCGATTCTAT 58.950 41.667 11.83 0.00 37.23 1.98
958 1019 3.328382 TCGTTCAGTGGGAAATCGATT 57.672 42.857 4.39 4.39 37.23 3.34
984 1045 3.314357 CGTCCATAACCTAGTCGACATCA 59.686 47.826 19.50 1.08 0.00 3.07
1087 1148 0.036388 GGTCTCCCAGCATGACGAAA 60.036 55.000 0.00 0.00 39.69 3.46
1114 1175 4.133820 CGGATAAACATTGGACCATAGCA 58.866 43.478 0.00 0.00 0.00 3.49
1155 1216 9.665719 TTGCAGTTGTAGATGTAATTCAGATTA 57.334 29.630 0.00 0.00 0.00 1.75
1164 1225 5.234752 ACGTCATTGCAGTTGTAGATGTAA 58.765 37.500 0.00 0.00 0.00 2.41
1369 1440 6.532119 AGTACCTAGAGATGGTCTCCATTA 57.468 41.667 2.71 0.00 45.26 1.90
1410 1483 2.555227 CCTCTAAGCTCCCCAAAAGCAA 60.555 50.000 0.00 0.00 42.35 3.91
1411 1484 1.004745 CCTCTAAGCTCCCCAAAAGCA 59.995 52.381 0.00 0.00 42.35 3.91
1415 1488 2.044492 TCTCTCCTCTAAGCTCCCCAAA 59.956 50.000 0.00 0.00 0.00 3.28
1549 1622 4.732285 AGTGCTCAACTTGAACAATACG 57.268 40.909 0.00 0.00 34.57 3.06
1634 1707 2.110188 ACTGTGACCTAGGAACTCTGGA 59.890 50.000 17.98 0.00 41.75 3.86
1659 1732 1.294068 ACTTCCTCCCCCTGTATGCTA 59.706 52.381 0.00 0.00 0.00 3.49
1847 1925 8.115490 AGGAAACTTAACCATCTTTGATTCAG 57.885 34.615 0.00 0.00 37.44 3.02
2063 2151 6.349280 CCAGTTACATTGTGATGTTTGGTAGG 60.349 42.308 0.00 0.00 43.92 3.18
2128 2216 5.748402 TCTTGATCTATGCCAACTCAACAT 58.252 37.500 0.00 0.00 0.00 2.71
2326 2414 3.195661 GTTACTTGCCCGAGATTCGATT 58.804 45.455 0.00 0.00 43.74 3.34
2390 2479 6.296803 GGAACCTGGAAGATATTTATCGGTT 58.703 40.000 0.00 6.56 37.76 4.44
2400 2494 3.071023 CCAATAGCGGAACCTGGAAGATA 59.929 47.826 0.00 0.00 34.07 1.98
2495 2597 3.887110 ACTCATAATACCGATCGTCACCA 59.113 43.478 15.09 0.00 0.00 4.17
2566 2668 1.757682 AGACTCCTCGTCATGTCCTC 58.242 55.000 0.00 0.00 45.32 3.71
2567 2669 3.989782 AGACTCCTCGTCATGTCCT 57.010 52.632 0.00 0.00 45.32 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.