Multiple sequence alignment - TraesCS4D01G250600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G250600 chr4D 100.000 2612 0 0 1 2612 419245719 419248330 0.000000e+00 4824.0
1 TraesCS4D01G250600 chr4D 92.219 1812 88 16 201 1988 419207026 419205244 0.000000e+00 2516.0
2 TraesCS4D01G250600 chr4D 88.659 1693 113 24 521 2153 419232843 419231170 0.000000e+00 1989.0
3 TraesCS4D01G250600 chr4D 94.915 177 9 0 1 177 296754966 296754790 7.120000e-71 278.0
4 TraesCS4D01G250600 chr4D 85.075 134 18 2 2267 2400 419214419 419214288 4.530000e-28 135.0
5 TraesCS4D01G250600 chr4D 87.288 118 6 3 255 363 419233145 419233028 2.730000e-25 126.0
6 TraesCS4D01G250600 chr4B 91.009 1813 105 23 517 2309 517171408 517173182 0.000000e+00 2392.0
7 TraesCS4D01G250600 chr4B 90.746 1837 101 17 200 1997 517009023 517007217 0.000000e+00 2386.0
8 TraesCS4D01G250600 chr4B 88.704 1744 96 18 298 1997 517082055 517080369 0.000000e+00 2036.0
9 TraesCS4D01G250600 chr4B 90.007 1431 72 11 201 1611 517129656 517128277 0.000000e+00 1784.0
10 TraesCS4D01G250600 chr4B 87.651 413 28 5 1604 1997 517127232 517126824 2.370000e-125 459.0
11 TraesCS4D01G250600 chr4B 92.581 310 17 2 2307 2612 517173565 517173872 8.580000e-120 440.0
12 TraesCS4D01G250600 chr4B 97.297 111 3 0 201 311 517084417 517084307 3.430000e-44 189.0
13 TraesCS4D01G250600 chr4B 80.150 267 28 14 1997 2258 517126775 517126529 2.670000e-40 176.0
14 TraesCS4D01G250600 chr4B 87.681 138 9 4 232 363 517171128 517171263 1.250000e-33 154.0
15 TraesCS4D01G250600 chr4B 80.282 142 13 8 2117 2258 517060072 517059946 2.770000e-15 93.5
16 TraesCS4D01G250600 chr4B 93.750 48 3 0 2267 2314 517126493 517126446 3.610000e-09 73.1
17 TraesCS4D01G250600 chr4A 89.736 1705 89 31 303 1966 45735066 45736725 0.000000e+00 2100.0
18 TraesCS4D01G250600 chr4A 89.201 1565 103 30 443 1966 45469138 45467599 0.000000e+00 1893.0
19 TraesCS4D01G250600 chr4A 89.947 945 62 9 1070 1997 45366268 45365340 0.000000e+00 1188.0
20 TraesCS4D01G250600 chr4A 92.714 549 28 9 545 1084 45366977 45366432 0.000000e+00 782.0
21 TraesCS4D01G250600 chr4A 88.281 384 15 4 1993 2351 45411207 45410829 1.440000e-117 433.0
22 TraesCS4D01G250600 chr4A 93.548 248 11 2 1993 2239 45365300 45365057 5.310000e-97 364.0
23 TraesCS4D01G250600 chr4A 88.925 307 10 6 2137 2421 45411847 45411543 8.890000e-95 357.0
24 TraesCS4D01G250600 chr4A 89.531 277 22 3 2309 2585 45410327 45410058 6.920000e-91 344.0
25 TraesCS4D01G250600 chr4A 88.929 280 21 7 2309 2585 45364776 45364504 1.160000e-88 337.0
26 TraesCS4D01G250600 chr4A 83.624 287 26 10 1993 2272 45466261 45465989 1.550000e-62 250.0
27 TraesCS4D01G250600 chr4A 91.912 136 8 1 231 363 45376425 45376290 1.230000e-43 187.0
28 TraesCS4D01G250600 chr4A 94.643 112 5 1 201 312 45734566 45734676 3.460000e-39 172.0
29 TraesCS4D01G250600 chr4A 100.000 53 0 0 2267 2319 45410548 45410496 5.950000e-17 99.0
30 TraesCS4D01G250600 chr4A 98.000 50 1 0 2223 2272 45365050 45365001 1.290000e-13 87.9
31 TraesCS4D01G250600 chr4A 95.238 42 2 0 2306 2347 45410787 45410746 1.680000e-07 67.6
32 TraesCS4D01G250600 chr4A 100.000 35 0 0 2108 2142 45417635 45417601 6.030000e-07 65.8
33 TraesCS4D01G250600 chr7D 98.870 177 2 0 1 177 600893597 600893773 1.510000e-82 316.0
34 TraesCS4D01G250600 chr7D 94.350 177 10 0 1 177 456373189 456373365 3.310000e-69 272.0
35 TraesCS4D01G250600 chr7D 93.370 181 12 0 1 181 106417850 106417670 4.280000e-68 268.0
36 TraesCS4D01G250600 chr6D 95.480 177 8 0 4 180 404223316 404223140 1.530000e-72 283.0
37 TraesCS4D01G250600 chr3B 94.915 177 9 0 1 177 677855848 677856024 7.120000e-71 278.0
38 TraesCS4D01G250600 chr5D 94.915 177 8 1 1 177 228058427 228058602 2.560000e-70 276.0
39 TraesCS4D01G250600 chrUn 94.350 177 10 0 1 177 312499531 312499707 3.310000e-69 272.0
40 TraesCS4D01G250600 chr1B 93.820 178 10 1 1 177 349756537 349756360 1.540000e-67 267.0
41 TraesCS4D01G250600 chr7B 86.047 172 16 4 2439 2609 544452119 544451955 7.430000e-41 178.0
42 TraesCS4D01G250600 chr2D 84.756 164 20 3 2422 2583 33328178 33328018 2.690000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G250600 chr4D 419245719 419248330 2611 False 4824.000000 4824 100.000000 1 2612 1 chr4D.!!$F1 2611
1 TraesCS4D01G250600 chr4D 419205244 419207026 1782 True 2516.000000 2516 92.219000 201 1988 1 chr4D.!!$R2 1787
2 TraesCS4D01G250600 chr4D 419231170 419233145 1975 True 1057.500000 1989 87.973500 255 2153 2 chr4D.!!$R4 1898
3 TraesCS4D01G250600 chr4B 517007217 517009023 1806 True 2386.000000 2386 90.746000 200 1997 1 chr4B.!!$R1 1797
4 TraesCS4D01G250600 chr4B 517080369 517084417 4048 True 1112.500000 2036 93.000500 201 1997 2 chr4B.!!$R3 1796
5 TraesCS4D01G250600 chr4B 517171128 517173872 2744 False 995.333333 2392 90.423667 232 2612 3 chr4B.!!$F1 2380
6 TraesCS4D01G250600 chr4B 517126446 517129656 3210 True 623.025000 1784 87.889500 201 2314 4 chr4B.!!$R4 2113
7 TraesCS4D01G250600 chr4A 45734566 45736725 2159 False 1136.000000 2100 92.189500 201 1966 2 chr4A.!!$F1 1765
8 TraesCS4D01G250600 chr4A 45465989 45469138 3149 True 1071.500000 1893 86.412500 443 2272 2 chr4A.!!$R5 1829
9 TraesCS4D01G250600 chr4A 45364504 45366977 2473 True 551.780000 1188 92.627600 545 2585 5 chr4A.!!$R3 2040
10 TraesCS4D01G250600 chr4A 45410058 45411847 1789 True 260.120000 433 92.395000 1993 2585 5 chr4A.!!$R4 592


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.104487 GAGTCCTAGTTTAGCCGGGC 59.896 60.0 12.11 12.11 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 5718 0.034896 ATCCGCAGAACGTTCCTTGT 59.965 50.0 24.22 3.1 41.42 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.723601 AACATTTACATTTAGAATGCCAAACAT 57.276 25.926 0.80 0.00 42.30 2.71
169 170 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44
170 171 2.158813 AGGCACTACATTATGGAACGGG 60.159 50.000 0.00 0.00 36.02 5.28
171 172 2.218603 GCACTACATTATGGAACGGGG 58.781 52.381 0.00 0.00 0.00 5.73
172 173 2.846193 CACTACATTATGGAACGGGGG 58.154 52.381 0.00 0.00 0.00 5.40
189 190 0.751452 GGGGAGTCCTAGTTTAGCCG 59.249 60.000 9.58 0.00 0.00 5.52
190 191 0.751452 GGGAGTCCTAGTTTAGCCGG 59.249 60.000 9.58 0.00 0.00 6.13
191 192 0.751452 GGAGTCCTAGTTTAGCCGGG 59.249 60.000 2.18 0.00 0.00 5.73
192 193 0.104487 GAGTCCTAGTTTAGCCGGGC 59.896 60.000 12.11 12.11 0.00 6.13
193 194 1.145598 GTCCTAGTTTAGCCGGGCC 59.854 63.158 17.02 0.00 0.00 5.80
194 195 2.068213 TCCTAGTTTAGCCGGGCCC 61.068 63.158 17.02 13.57 0.00 5.80
196 197 1.153229 CTAGTTTAGCCGGGCCCAC 60.153 63.158 24.92 13.86 0.00 4.61
197 198 2.918230 CTAGTTTAGCCGGGCCCACG 62.918 65.000 24.92 12.59 0.00 4.94
198 199 4.710167 GTTTAGCCGGGCCCACGT 62.710 66.667 24.92 7.36 0.00 4.49
469 3210 3.656559 GCGGTCAATACCCAATACGTAT 58.343 45.455 1.14 1.14 43.54 3.06
492 3233 2.100410 TCGATCGCGCACTCTCAC 59.900 61.111 11.09 0.00 37.46 3.51
493 3234 2.951745 CGATCGCGCACTCTCACC 60.952 66.667 8.75 0.00 0.00 4.02
495 3236 1.728069 GATCGCGCACTCTCACCTA 59.272 57.895 8.75 0.00 0.00 3.08
496 3237 0.592754 GATCGCGCACTCTCACCTAC 60.593 60.000 8.75 0.00 0.00 3.18
497 3238 2.324332 ATCGCGCACTCTCACCTACG 62.324 60.000 8.75 0.00 0.00 3.51
498 3239 2.567049 GCGCACTCTCACCTACGT 59.433 61.111 0.30 0.00 0.00 3.57
500 3241 0.522915 GCGCACTCTCACCTACGTAC 60.523 60.000 0.30 0.00 0.00 3.67
539 3296 2.575694 ACAGAAATGTTTGCGTTGCA 57.424 40.000 0.00 0.00 36.47 4.08
594 3352 1.078848 CTTCTGCTTCCACCTCCGG 60.079 63.158 0.00 0.00 0.00 5.14
627 3397 0.803768 CCGCATCAAGTCCACGAGAG 60.804 60.000 0.00 0.00 0.00 3.20
651 3423 1.454111 GCCCTAGTCCAGCTCGAGA 60.454 63.158 18.75 0.00 0.00 4.04
712 3484 4.253685 GACGGATCAAGAACCAGAAATCA 58.746 43.478 0.00 0.00 0.00 2.57
879 3651 1.448540 CTCCAACGGCGATCTTGCT 60.449 57.895 16.62 0.00 34.52 3.91
1015 3787 2.420568 GCCATGGACTACGTCGGGA 61.421 63.158 18.40 0.00 32.65 5.14
1018 3790 2.117156 ATGGACTACGTCGGGACCG 61.117 63.158 3.96 3.96 41.35 4.79
1117 4070 1.661480 GCCAACAAGATGCACAGCA 59.339 52.632 0.00 0.00 44.86 4.41
1119 4072 1.933500 GCCAACAAGATGCACAGCAAG 60.934 52.381 0.00 0.00 43.62 4.01
1120 4073 1.415374 CAACAAGATGCACAGCAAGC 58.585 50.000 0.00 0.00 43.62 4.01
1121 4074 1.034356 AACAAGATGCACAGCAAGCA 58.966 45.000 0.00 0.23 43.62 3.91
1161 4114 0.038166 TCAAGCCCCACAACATCCTC 59.962 55.000 0.00 0.00 0.00 3.71
1178 4131 1.946475 CTCGTCGGGGAAGGAGGAAC 61.946 65.000 0.00 0.00 0.00 3.62
1200 4153 2.341846 TCCTCAAGTTTTGCGACCTT 57.658 45.000 0.00 0.00 0.00 3.50
1284 4237 4.959596 GCGCCCGAGATGCTCCTC 62.960 72.222 0.00 0.00 0.00 3.71
1394 4347 2.413837 CGACAAAAAGGACGACAGGAT 58.586 47.619 0.00 0.00 0.00 3.24
1546 4514 2.214216 CCCCGTGAGACCTTGTCCA 61.214 63.158 0.00 0.00 32.18 4.02
1579 4547 3.497584 CCAAGTCTTGAAAGGGCTTCTCT 60.498 47.826 14.42 0.00 34.86 3.10
1580 4548 3.694043 AGTCTTGAAAGGGCTTCTCTC 57.306 47.619 0.00 0.00 34.86 3.20
1581 4549 2.304470 AGTCTTGAAAGGGCTTCTCTCC 59.696 50.000 0.00 0.00 34.86 3.71
1582 4550 2.304470 GTCTTGAAAGGGCTTCTCTCCT 59.696 50.000 0.00 0.00 34.86 3.69
1583 4551 2.982488 TCTTGAAAGGGCTTCTCTCCTT 59.018 45.455 0.00 0.00 44.53 3.36
1584 4552 3.008485 TCTTGAAAGGGCTTCTCTCCTTC 59.992 47.826 0.00 0.00 42.06 3.46
1585 4553 2.625639 TGAAAGGGCTTCTCTCCTTCT 58.374 47.619 0.00 0.00 42.06 2.85
1586 4554 2.569404 TGAAAGGGCTTCTCTCCTTCTC 59.431 50.000 0.00 0.00 42.06 2.87
1686 5718 3.057548 TGTTAGAGTCGCCGCCGA 61.058 61.111 0.00 0.00 42.01 5.54
1791 5838 1.070134 CGACACCCAAGAAGAACCTGA 59.930 52.381 0.00 0.00 0.00 3.86
1816 5863 0.914417 ATCAAGGTCATCCCACCGGT 60.914 55.000 0.00 0.00 41.90 5.28
1820 5867 2.267961 GTCATCCCACCGGTGACC 59.732 66.667 36.07 12.15 35.68 4.02
1824 5871 4.902258 TCCCACCGGTGACCCCAA 62.902 66.667 36.07 10.96 0.00 4.12
1848 5895 1.606480 CGAAGAAGAACCTGCTGCAGA 60.606 52.381 30.10 1.36 32.44 4.26
1853 5900 0.252479 AGAACCTGCTGCAGAGGATG 59.748 55.000 30.10 15.40 34.37 3.51
1882 5929 3.542676 ACCGGCGACACCACAGAA 61.543 61.111 9.30 0.00 39.03 3.02
2065 7516 9.941664 CAATGTAATTTCTTGGAGATGATGTAC 57.058 33.333 0.00 0.00 31.22 2.90
2066 7517 8.682936 ATGTAATTTCTTGGAGATGATGTACC 57.317 34.615 0.00 0.00 0.00 3.34
2067 7518 6.761242 TGTAATTTCTTGGAGATGATGTACCG 59.239 38.462 0.00 0.00 0.00 4.02
2068 7519 3.819564 TTCTTGGAGATGATGTACCGG 57.180 47.619 0.00 0.00 0.00 5.28
2084 7535 0.179073 CCGGCCTCGAACTGATCATT 60.179 55.000 0.00 0.00 39.00 2.57
2092 7543 5.795441 GCCTCGAACTGATCATTTTGTAAAC 59.205 40.000 11.62 0.00 0.00 2.01
2380 8812 6.523676 TTTTCTGAAAATTCAATTCACGCC 57.476 33.333 11.33 0.00 36.64 5.68
2601 9038 6.498304 AGCTGACAACAACTAATCTGTTTTG 58.502 36.000 0.00 0.00 34.80 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 9.726438 GTTCCATAATGTAGTGCCTATAGATTT 57.274 33.333 0.00 0.00 0.00 2.17
142 143 8.035394 CGTTCCATAATGTAGTGCCTATAGATT 58.965 37.037 0.00 0.00 0.00 2.40
143 144 7.363880 CCGTTCCATAATGTAGTGCCTATAGAT 60.364 40.741 0.00 0.00 0.00 1.98
144 145 6.071560 CCGTTCCATAATGTAGTGCCTATAGA 60.072 42.308 0.00 0.00 0.00 1.98
145 146 6.100004 CCGTTCCATAATGTAGTGCCTATAG 58.900 44.000 0.00 0.00 0.00 1.31
149 150 2.158813 CCCGTTCCATAATGTAGTGCCT 60.159 50.000 0.00 0.00 0.00 4.75
151 152 2.218603 CCCCGTTCCATAATGTAGTGC 58.781 52.381 0.00 0.00 0.00 4.40
152 153 2.846193 CCCCCGTTCCATAATGTAGTG 58.154 52.381 0.00 0.00 0.00 2.74
169 170 1.129917 GGCTAAACTAGGACTCCCCC 58.870 60.000 0.00 0.00 34.66 5.40
170 171 0.751452 CGGCTAAACTAGGACTCCCC 59.249 60.000 0.00 0.00 0.00 4.81
171 172 0.751452 CCGGCTAAACTAGGACTCCC 59.249 60.000 0.00 0.00 0.00 4.30
172 173 0.751452 CCCGGCTAAACTAGGACTCC 59.249 60.000 0.00 0.00 0.00 3.85
173 174 0.104487 GCCCGGCTAAACTAGGACTC 59.896 60.000 0.71 0.00 0.00 3.36
174 175 1.335882 GGCCCGGCTAAACTAGGACT 61.336 60.000 9.86 0.00 0.00 3.85
176 177 2.068213 GGGCCCGGCTAAACTAGGA 61.068 63.158 5.69 0.00 0.00 2.94
180 181 4.404098 CGTGGGCCCGGCTAAACT 62.404 66.667 19.37 0.00 0.00 2.66
181 182 2.598098 ATACGTGGGCCCGGCTAAAC 62.598 60.000 19.37 7.54 0.00 2.01
182 183 1.047596 TATACGTGGGCCCGGCTAAA 61.048 55.000 19.37 0.00 0.00 1.85
185 186 3.543641 GTATACGTGGGCCCGGCT 61.544 66.667 19.37 3.37 0.00 5.52
186 187 3.510679 GAGTATACGTGGGCCCGGC 62.511 68.421 19.37 12.01 0.00 6.13
189 190 2.732658 CCGAGTATACGTGGGCCC 59.267 66.667 17.59 17.59 0.00 5.80
190 191 2.028631 GCCGAGTATACGTGGGCC 59.971 66.667 18.48 0.00 37.82 5.80
191 192 2.028631 GGCCGAGTATACGTGGGC 59.971 66.667 21.26 21.26 43.01 5.36
192 193 0.319555 CATGGCCGAGTATACGTGGG 60.320 60.000 15.48 10.76 0.00 4.61
193 194 0.944311 GCATGGCCGAGTATACGTGG 60.944 60.000 10.97 10.97 0.00 4.94
194 195 0.249280 TGCATGGCCGAGTATACGTG 60.249 55.000 0.00 0.00 0.00 4.49
196 197 0.249280 TGTGCATGGCCGAGTATACG 60.249 55.000 0.00 0.00 0.00 3.06
197 198 1.217882 GTGTGCATGGCCGAGTATAC 58.782 55.000 0.00 0.00 0.00 1.47
198 199 0.827368 TGTGTGCATGGCCGAGTATA 59.173 50.000 0.00 0.00 0.00 1.47
469 3210 1.773054 GAGTGCGCGATCGACTAGGA 61.773 60.000 21.57 4.83 38.10 2.94
497 3238 9.871299 CTGTATATATAGATCGTGCATGAGTAC 57.129 37.037 15.04 8.37 0.00 2.73
498 3239 9.832445 TCTGTATATATAGATCGTGCATGAGTA 57.168 33.333 15.04 8.81 0.00 2.59
682 3454 3.000819 TTGATCCGTCCCGTGGCT 61.001 61.111 0.00 0.00 0.00 4.75
712 3484 3.076092 CCTCCTCTTGCAGCAGGT 58.924 61.111 11.73 0.00 0.00 4.00
838 3610 1.519455 GGACCTTGATGGCGACGAG 60.519 63.158 0.00 0.00 40.22 4.18
839 3611 1.945354 GAGGACCTTGATGGCGACGA 61.945 60.000 0.00 0.00 40.22 4.20
879 3651 0.960364 GGATCTCTTTGTTGGCGGCA 60.960 55.000 7.97 7.97 0.00 5.69
939 3711 1.826921 ATGGGAGCCGACGACGTAT 60.827 57.895 0.00 0.00 37.88 3.06
1015 3787 2.342648 GAAAGCGTGGAGGTCGGT 59.657 61.111 0.00 0.00 40.68 4.69
1018 3790 0.670854 GACAGGAAAGCGTGGAGGTC 60.671 60.000 0.00 0.00 34.31 3.85
1053 3825 3.323758 TTTCACGATGGCCTCCGGG 62.324 63.158 18.70 15.74 0.00 5.73
1117 4070 0.107508 CGGTGGAGGATGTGATGCTT 60.108 55.000 0.00 0.00 0.00 3.91
1119 4072 2.182842 GCGGTGGAGGATGTGATGC 61.183 63.158 0.00 0.00 0.00 3.91
1120 4073 1.884464 CGCGGTGGAGGATGTGATG 60.884 63.158 0.00 0.00 0.00 3.07
1121 4074 1.402896 ATCGCGGTGGAGGATGTGAT 61.403 55.000 6.13 0.00 0.00 3.06
1122 4075 0.753848 TATCGCGGTGGAGGATGTGA 60.754 55.000 6.13 0.00 0.00 3.58
1161 4114 2.577593 GTTCCTCCTTCCCCGACG 59.422 66.667 0.00 0.00 0.00 5.12
1178 4131 1.128692 GGTCGCAAAACTTGAGGATCG 59.871 52.381 0.00 0.00 38.61 3.69
1429 4382 3.203412 CGTCCTCTCGTCCGGGAG 61.203 72.222 9.60 9.60 42.17 4.30
1468 4421 1.812686 TAGAACACTCGCGGCACCTT 61.813 55.000 6.13 0.00 0.00 3.50
1518 4486 0.903454 TCTCACGGGGGAAGAGGTTC 60.903 60.000 0.00 0.00 0.00 3.62
1579 4547 1.118965 TGGGTTGCACTCGAGAAGGA 61.119 55.000 21.68 9.66 0.00 3.36
1580 4548 0.671781 CTGGGTTGCACTCGAGAAGG 60.672 60.000 21.68 9.24 0.00 3.46
1581 4549 1.294659 GCTGGGTTGCACTCGAGAAG 61.295 60.000 21.68 12.29 0.00 2.85
1582 4550 1.301716 GCTGGGTTGCACTCGAGAA 60.302 57.895 21.68 0.00 0.00 2.87
1583 4551 0.898326 TAGCTGGGTTGCACTCGAGA 60.898 55.000 21.68 0.00 34.99 4.04
1584 4552 0.037326 TTAGCTGGGTTGCACTCGAG 60.037 55.000 11.84 11.84 34.99 4.04
1585 4553 0.037326 CTTAGCTGGGTTGCACTCGA 60.037 55.000 0.00 0.00 34.99 4.04
1586 4554 1.639298 GCTTAGCTGGGTTGCACTCG 61.639 60.000 0.00 0.00 34.99 4.18
1680 5712 2.663852 AACGTTCCTTGTCGGCGG 60.664 61.111 7.21 0.00 0.00 6.13
1681 5713 1.663702 AGAACGTTCCTTGTCGGCG 60.664 57.895 24.22 0.00 0.00 6.46
1686 5718 0.034896 ATCCGCAGAACGTTCCTTGT 59.965 50.000 24.22 3.10 41.42 3.16
1791 5838 1.700042 GGGATGACCTTGATCCGCCT 61.700 60.000 0.00 0.00 40.47 5.52
1816 5863 2.043992 TCTTCTTCGTTCTTGGGGTCA 58.956 47.619 0.00 0.00 0.00 4.02
1820 5867 2.808543 CAGGTTCTTCTTCGTTCTTGGG 59.191 50.000 0.00 0.00 0.00 4.12
1824 5871 2.760374 CAGCAGGTTCTTCTTCGTTCT 58.240 47.619 0.00 0.00 0.00 3.01
1853 5900 2.124695 GCCGGTGGGATGACCTTC 60.125 66.667 1.90 0.00 41.11 3.46
1882 5929 2.166664 GGTATCCTGAGCACGTTCTTCT 59.833 50.000 0.00 0.00 0.00 2.85
1922 5969 3.006323 GCATCTAGCTACACTACATGGCT 59.994 47.826 0.00 0.00 41.15 4.75
2065 7516 0.179073 AATGATCAGTTCGAGGCCGG 60.179 55.000 0.09 0.00 36.24 6.13
2066 7517 1.656652 AAATGATCAGTTCGAGGCCG 58.343 50.000 1.80 0.00 37.07 6.13
2067 7518 2.749621 ACAAAATGATCAGTTCGAGGCC 59.250 45.455 9.12 0.00 0.00 5.19
2068 7519 5.545658 TTACAAAATGATCAGTTCGAGGC 57.454 39.130 9.12 0.00 0.00 4.70
2158 7613 4.434483 TGCCCTCGCAACTCTCTA 57.566 55.556 0.00 0.00 43.74 2.43
2461 8893 7.514573 AATTTCAAAACCGCGTATTATTTCC 57.485 32.000 4.92 0.00 0.00 3.13
2545 8982 1.209747 GACTGGACCCTAATCGGCTTT 59.790 52.381 0.00 0.00 0.00 3.51
2580 9017 5.587289 GCCAAAACAGATTAGTTGTTGTCA 58.413 37.500 0.00 0.00 38.67 3.58



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.