Multiple sequence alignment - TraesCS4D01G250300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G250300 chr4D 100.000 3073 0 0 1 3073 419160867 419157795 0.000000e+00 5675.0
1 TraesCS4D01G250300 chr4D 89.294 906 46 9 2219 3073 9721124 9722029 0.000000e+00 1088.0
2 TraesCS4D01G250300 chr4D 87.500 192 15 5 977 1163 477746518 477746705 2.400000e-51 213.0
3 TraesCS4D01G250300 chr4D 95.536 112 4 1 1962 2073 477747880 477747990 8.760000e-41 178.0
4 TraesCS4D01G250300 chr4D 75.515 388 51 20 2213 2560 419156832 419157215 1.910000e-32 150.0
5 TraesCS4D01G250300 chr4D 95.833 48 2 0 2164 2211 477748092 477748139 9.140000e-11 78.7
6 TraesCS4D01G250300 chr3D 87.956 905 65 15 2207 3073 547914886 547915784 0.000000e+00 1027.0
7 TraesCS4D01G250300 chr3D 93.939 231 14 0 2843 3073 547919092 547919322 1.750000e-92 350.0
8 TraesCS4D01G250300 chr3D 85.156 128 10 3 2212 2331 547920736 547920610 4.160000e-24 122.0
9 TraesCS4D01G250300 chr3D 95.238 42 1 1 355 396 3008538 3008498 7.110000e-07 65.8
10 TraesCS4D01G250300 chr4B 89.251 828 22 18 933 1701 516957847 516957028 0.000000e+00 974.0
11 TraesCS4D01G250300 chr4B 95.890 438 11 4 1774 2211 516957010 516956580 0.000000e+00 702.0
12 TraesCS4D01G250300 chr4B 91.232 479 28 4 1 477 516959647 516959181 9.290000e-180 640.0
13 TraesCS4D01G250300 chr4B 94.340 318 13 3 481 795 516958584 516958269 1.660000e-132 483.0
14 TraesCS4D01G250300 chr4B 93.617 141 5 3 977 1113 603516795 603516935 1.120000e-49 207.0
15 TraesCS4D01G250300 chr4B 96.522 115 3 1 1962 2076 603517903 603518016 4.050000e-44 189.0
16 TraesCS4D01G250300 chr5A 86.980 914 58 22 2212 3073 455959867 455960771 0.000000e+00 972.0
17 TraesCS4D01G250300 chr5A 82.171 129 18 4 2212 2337 455961736 455961610 4.190000e-19 106.0
18 TraesCS4D01G250300 chr5A 82.707 133 10 2 2212 2337 455963454 455963328 4.190000e-19 106.0
19 TraesCS4D01G250300 chr5A 95.918 49 1 1 36 84 564323370 564323417 9.140000e-11 78.7
20 TraesCS4D01G250300 chr1B 90.592 659 39 5 2436 3073 104726236 104726892 0.000000e+00 852.0
21 TraesCS4D01G250300 chr1B 84.783 138 12 3 2212 2341 104726018 104726154 2.490000e-26 130.0
22 TraesCS4D01G250300 chr1B 88.571 70 6 2 1691 1759 648794536 648794604 1.960000e-12 84.2
23 TraesCS4D01G250300 chr1B 82.105 95 15 2 1979 2072 612893384 612893477 2.540000e-11 80.5
24 TraesCS4D01G250300 chr1B 81.429 70 10 3 528 596 58253141 58253208 2.000000e-03 54.7
25 TraesCS4D01G250300 chr7B 93.926 461 18 4 2620 3073 356728930 356728473 0.000000e+00 688.0
26 TraesCS4D01G250300 chr7B 74.659 367 50 25 2225 2552 356727533 356727895 4.160000e-24 122.0
27 TraesCS4D01G250300 chr7B 84.158 101 13 3 49 147 549346537 549346636 9.070000e-16 95.3
28 TraesCS4D01G250300 chr7B 95.000 60 2 1 1702 1761 150701699 150701757 3.260000e-15 93.5
29 TraesCS4D01G250300 chr7B 100.000 35 0 0 358 392 524244302 524244336 7.110000e-07 65.8
30 TraesCS4D01G250300 chr7B 79.310 87 14 4 524 608 58434409 58434325 1.190000e-04 58.4
31 TraesCS4D01G250300 chr7B 100.000 29 0 0 568 596 524918520 524918492 2.000000e-03 54.7
32 TraesCS4D01G250300 chr6B 92.781 471 26 4 2610 3073 157908946 157909415 0.000000e+00 675.0
33 TraesCS4D01G250300 chr6B 83.953 430 29 16 2212 2610 157903965 157904385 2.890000e-100 375.0
34 TraesCS4D01G250300 chr6B 86.207 203 24 3 8 209 601885275 601885076 1.860000e-52 217.0
35 TraesCS4D01G250300 chr6B 79.695 197 19 13 8 204 87520694 87520519 4.160000e-24 122.0
36 TraesCS4D01G250300 chr6B 95.000 60 2 1 1702 1761 186086922 186086864 3.260000e-15 93.5
37 TraesCS4D01G250300 chr4A 87.449 494 43 11 481 967 45839994 45840475 4.480000e-153 551.0
38 TraesCS4D01G250300 chr4A 88.839 448 26 7 1181 1615 45840688 45841124 2.100000e-146 529.0
39 TraesCS4D01G250300 chr4A 93.160 307 21 0 80 386 45839235 45839541 4.670000e-123 451.0
40 TraesCS4D01G250300 chr4A 93.074 231 10 6 933 1162 45840409 45840634 1.770000e-87 333.0
41 TraesCS4D01G250300 chr4A 96.129 155 6 0 1920 2074 45841997 45842151 1.410000e-63 254.0
42 TraesCS4D01G250300 chr4A 89.571 163 12 4 959 1118 684532743 684532903 5.200000e-48 202.0
43 TraesCS4D01G250300 chr4A 97.170 106 3 0 1968 2073 684534181 684534286 2.430000e-41 180.0
44 TraesCS4D01G250300 chr4A 97.590 83 2 0 2126 2208 45857130 45857212 3.190000e-30 143.0
45 TraesCS4D01G250300 chr2D 86.229 472 31 10 2633 3073 58658273 58658741 5.960000e-132 481.0
46 TraesCS4D01G250300 chr2D 82.724 492 50 14 2244 2706 224324605 224324120 3.690000e-109 405.0
47 TraesCS4D01G250300 chr2D 81.598 413 34 22 2212 2591 58656490 58656893 1.380000e-78 303.0
48 TraesCS4D01G250300 chr2D 86.364 220 26 3 39 255 309084129 309083911 1.420000e-58 237.0
49 TraesCS4D01G250300 chr2D 84.348 115 12 4 2212 2320 7293381 7293267 1.170000e-19 108.0
50 TraesCS4D01G250300 chr2D 92.063 63 2 3 1694 1754 464511182 464511121 5.460000e-13 86.1
51 TraesCS4D01G250300 chr2D 92.063 63 2 3 1694 1754 464525022 464524961 5.460000e-13 86.1
52 TraesCS4D01G250300 chr1A 90.698 344 5 8 2756 3073 417547875 417547533 1.690000e-117 433.0
53 TraesCS4D01G250300 chr1A 87.387 111 5 5 2339 2444 417549395 417549289 5.380000e-23 119.0
54 TraesCS4D01G250300 chr1A 94.828 58 2 1 1702 1759 13591429 13591373 4.220000e-14 89.8
55 TraesCS4D01G250300 chr1A 82.105 95 15 2 1979 2072 543067732 543067825 2.540000e-11 80.5
56 TraesCS4D01G250300 chr3A 81.818 440 31 9 2212 2620 143970519 143970098 1.060000e-84 324.0
57 TraesCS4D01G250300 chr3B 79.181 293 58 2 39 331 6191369 6191658 1.870000e-47 200.0
58 TraesCS4D01G250300 chr3B 90.769 65 4 2 1690 1753 100148603 100148540 5.460000e-13 86.1
59 TraesCS4D01G250300 chr3B 81.013 79 9 6 521 596 11825259 11825334 1.190000e-04 58.4
60 TraesCS4D01G250300 chr7A 85.492 193 24 4 107 295 541893518 541893710 6.720000e-47 198.0
61 TraesCS4D01G250300 chr2B 86.577 149 17 1 110 255 359112597 359112745 8.820000e-36 161.0
62 TraesCS4D01G250300 chr2B 87.500 48 4 2 569 615 18095470 18095516 2.000000e-03 54.7
63 TraesCS4D01G250300 chr1D 75.000 280 45 17 2207 2464 275725371 275725095 4.190000e-19 106.0
64 TraesCS4D01G250300 chr1D 95.000 60 2 1 1702 1761 264129172 264129114 3.260000e-15 93.5
65 TraesCS4D01G250300 chr1D 89.062 64 7 0 1968 2031 447259263 447259326 2.540000e-11 80.5
66 TraesCS4D01G250300 chr1D 88.235 51 4 2 346 396 345812397 345812445 3.310000e-05 60.2
67 TraesCS4D01G250300 chr1D 89.362 47 5 0 1969 2015 447368510 447368556 3.310000e-05 60.2
68 TraesCS4D01G250300 chr1D 86.792 53 3 2 552 602 411276803 411276753 4.280000e-04 56.5
69 TraesCS4D01G250300 chr1D 90.476 42 4 0 270 311 461416887 461416846 4.280000e-04 56.5
70 TraesCS4D01G250300 chr7D 90.769 65 5 1 1691 1754 534570645 534570709 5.460000e-13 86.1
71 TraesCS4D01G250300 chr7D 100.000 35 0 0 358 392 495871922 495871956 7.110000e-07 65.8
72 TraesCS4D01G250300 chrUn 95.349 43 0 2 358 399 153391883 153391842 1.980000e-07 67.6
73 TraesCS4D01G250300 chr6A 95.349 43 0 2 358 399 48089026 48088985 1.980000e-07 67.6
74 TraesCS4D01G250300 chr5B 95.122 41 1 1 357 397 375617293 375617332 2.560000e-06 63.9
75 TraesCS4D01G250300 chr5B 79.012 81 16 1 528 608 580167022 580166943 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G250300 chr4D 419157795 419160867 3072 True 5675.00 5675 100.00000 1 3073 1 chr4D.!!$R1 3072
1 TraesCS4D01G250300 chr4D 9721124 9722029 905 False 1088.00 1088 89.29400 2219 3073 1 chr4D.!!$F1 854
2 TraesCS4D01G250300 chr3D 547914886 547919322 4436 False 688.50 1027 90.94750 2207 3073 2 chr3D.!!$F1 866
3 TraesCS4D01G250300 chr4B 516956580 516959647 3067 True 699.75 974 92.67825 1 2211 4 chr4B.!!$R1 2210
4 TraesCS4D01G250300 chr5A 455959867 455960771 904 False 972.00 972 86.98000 2212 3073 1 chr5A.!!$F1 861
5 TraesCS4D01G250300 chr1B 104726018 104726892 874 False 491.00 852 87.68750 2212 3073 2 chr1B.!!$F4 861
6 TraesCS4D01G250300 chr4A 45839235 45842151 2916 False 423.60 551 91.73020 80 2074 5 chr4A.!!$F2 1994
7 TraesCS4D01G250300 chr2D 58656490 58658741 2251 False 392.00 481 83.91350 2212 3073 2 chr2D.!!$F1 861
8 TraesCS4D01G250300 chr1A 417547533 417549395 1862 True 276.00 433 89.04250 2339 3073 2 chr1A.!!$R2 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 1463 0.106217 CTCCCCCTCTCTCTCCAGTC 60.106 65.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2424 4026 0.036306 TCAGAGGACCTTTTTCCCGC 59.964 55.0 0.0 0.0 36.12 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 170 1.098050 GATTGGTGAGGTGGCATGTC 58.902 55.000 0.00 0.00 0.00 3.06
261 263 1.819632 GTGGGACGATGATGTGGCC 60.820 63.158 0.00 0.00 0.00 5.36
298 300 3.818387 CATGTGTGCATGTTCAGAGAAC 58.182 45.455 3.05 3.05 45.48 3.01
311 313 4.592997 TCAGAGAACTGAGATAGTGGGA 57.407 45.455 0.00 0.00 46.55 4.37
318 320 7.400339 AGAGAACTGAGATAGTGGGAATTAACA 59.600 37.037 0.00 0.00 40.26 2.41
323 325 8.960591 ACTGAGATAGTGGGAATTAACAATTTG 58.039 33.333 0.00 0.00 38.49 2.32
394 396 9.482627 AAGATCTTATATTTCTTTACAGAGCGG 57.517 33.333 6.06 0.00 0.00 5.52
399 401 9.360093 CTTATATTTCTTTACAGAGCGGATAGG 57.640 37.037 0.00 0.00 0.00 2.57
413 415 3.132467 GCGGATAGGTCATAGTATTCCCC 59.868 52.174 0.00 0.00 0.00 4.81
414 416 3.705072 CGGATAGGTCATAGTATTCCCCC 59.295 52.174 0.00 0.00 0.00 5.40
415 417 4.572223 CGGATAGGTCATAGTATTCCCCCT 60.572 50.000 0.00 0.00 0.00 4.79
416 418 5.351405 GGATAGGTCATAGTATTCCCCCTT 58.649 45.833 0.00 0.00 0.00 3.95
417 419 5.791141 GGATAGGTCATAGTATTCCCCCTTT 59.209 44.000 0.00 0.00 0.00 3.11
418 420 6.274908 GGATAGGTCATAGTATTCCCCCTTTT 59.725 42.308 0.00 0.00 0.00 2.27
419 421 7.202289 GGATAGGTCATAGTATTCCCCCTTTTT 60.202 40.741 0.00 0.00 0.00 1.94
464 470 3.764237 TTTGTACTCCCTCTGTTCCAC 57.236 47.619 0.00 0.00 0.00 4.02
487 1095 7.019418 CACTATCTAGTGCGCGTGTATTATTA 58.981 38.462 8.43 0.00 46.03 0.98
519 1127 3.305398 AAGTCGGTAAACTCTGCTCAG 57.695 47.619 0.00 0.00 0.00 3.35
629 1242 7.643569 TTGGTATTGTCAATGCTGATACATT 57.356 32.000 12.61 0.00 40.90 2.71
641 1254 6.887376 TGCTGATACATTTTTCGTAGACTC 57.113 37.500 0.00 0.00 34.32 3.36
665 1278 5.183140 CGATCAAAGTTTACAGGGGTTTGAT 59.817 40.000 8.04 8.04 45.85 2.57
747 1362 9.233232 GAAAAGAAGCTTTGATTTTTCTAACGA 57.767 29.630 20.36 0.00 35.77 3.85
795 1410 1.006079 GTTTGCAAAAGACAGCGCAAC 60.006 47.619 14.67 0.00 43.57 4.17
796 1411 0.527385 TTGCAAAAGACAGCGCAACC 60.527 50.000 11.47 0.00 39.32 3.77
798 1413 2.032981 CAAAAGACAGCGCAACCCT 58.967 52.632 11.47 0.00 0.00 4.34
799 1414 1.234821 CAAAAGACAGCGCAACCCTA 58.765 50.000 11.47 0.00 0.00 3.53
800 1415 1.069227 CAAAAGACAGCGCAACCCTAC 60.069 52.381 11.47 0.00 0.00 3.18
801 1416 0.107831 AAAGACAGCGCAACCCTACA 59.892 50.000 11.47 0.00 0.00 2.74
802 1417 0.324943 AAGACAGCGCAACCCTACAT 59.675 50.000 11.47 0.00 0.00 2.29
815 1430 6.295123 CGCAACCCTACATCTATACCTAACAT 60.295 42.308 0.00 0.00 0.00 2.71
832 1447 1.527380 ATCCGTCGGCTCTCTCTCC 60.527 63.158 6.34 0.00 0.00 3.71
834 1449 3.213402 CGTCGGCTCTCTCTCCCC 61.213 72.222 0.00 0.00 0.00 4.81
841 1456 0.178990 GCTCTCTCTCCCCCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
842 1457 1.522900 CTCTCTCTCCCCCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
845 1460 0.253868 TCTCTCCCCCTCTCTCTCCA 60.254 60.000 0.00 0.00 0.00 3.86
846 1461 0.185901 CTCTCCCCCTCTCTCTCCAG 59.814 65.000 0.00 0.00 0.00 3.86
847 1462 0.553862 TCTCCCCCTCTCTCTCCAGT 60.554 60.000 0.00 0.00 0.00 4.00
848 1463 0.106217 CTCCCCCTCTCTCTCCAGTC 60.106 65.000 0.00 0.00 0.00 3.51
849 1464 0.553862 TCCCCCTCTCTCTCCAGTCT 60.554 60.000 0.00 0.00 0.00 3.24
852 1467 1.101049 CCCTCTCTCTCCAGTCTCGC 61.101 65.000 0.00 0.00 0.00 5.03
864 1479 5.477291 TCTCCAGTCTCGCCTTTATATAAGG 59.523 44.000 8.52 8.52 40.39 2.69
868 1798 6.334202 CAGTCTCGCCTTTATATAAGGGATC 58.666 44.000 23.99 8.95 37.88 3.36
882 1812 2.388232 GGATCGGTGGTCGTTGTGC 61.388 63.158 0.00 0.00 40.32 4.57
883 1813 1.666553 GATCGGTGGTCGTTGTGCA 60.667 57.895 0.00 0.00 40.32 4.57
911 1841 3.047796 CACAAGCAAAACACAGATCAGC 58.952 45.455 0.00 0.00 0.00 4.26
919 1849 1.102154 ACACAGATCAGCGAGAGGAG 58.898 55.000 0.00 0.00 0.00 3.69
920 1850 1.340502 ACACAGATCAGCGAGAGGAGA 60.341 52.381 0.00 0.00 0.00 3.71
921 1851 1.334556 CACAGATCAGCGAGAGGAGAG 59.665 57.143 0.00 0.00 0.00 3.20
922 1852 0.953727 CAGATCAGCGAGAGGAGAGG 59.046 60.000 0.00 0.00 0.00 3.69
923 1853 0.178992 AGATCAGCGAGAGGAGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
924 1854 0.179004 GATCAGCGAGAGGAGAGGGA 60.179 60.000 0.00 0.00 0.00 4.20
925 1855 0.178992 ATCAGCGAGAGGAGAGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
926 1856 1.225983 CAGCGAGAGGAGAGGGAGA 59.774 63.158 0.00 0.00 0.00 3.71
927 1857 0.819259 CAGCGAGAGGAGAGGGAGAG 60.819 65.000 0.00 0.00 0.00 3.20
928 1858 0.986019 AGCGAGAGGAGAGGGAGAGA 60.986 60.000 0.00 0.00 0.00 3.10
929 1859 0.535102 GCGAGAGGAGAGGGAGAGAG 60.535 65.000 0.00 0.00 0.00 3.20
930 1860 1.128200 CGAGAGGAGAGGGAGAGAGA 58.872 60.000 0.00 0.00 0.00 3.10
931 1861 1.070758 CGAGAGGAGAGGGAGAGAGAG 59.929 61.905 0.00 0.00 0.00 3.20
932 1862 0.846693 AGAGGAGAGGGAGAGAGAGC 59.153 60.000 0.00 0.00 0.00 4.09
933 1863 0.550914 GAGGAGAGGGAGAGAGAGCA 59.449 60.000 0.00 0.00 0.00 4.26
934 1864 0.552848 AGGAGAGGGAGAGAGAGCAG 59.447 60.000 0.00 0.00 0.00 4.24
935 1865 0.550914 GGAGAGGGAGAGAGAGCAGA 59.449 60.000 0.00 0.00 0.00 4.26
936 1866 1.145738 GGAGAGGGAGAGAGAGCAGAT 59.854 57.143 0.00 0.00 0.00 2.90
937 1867 2.508526 GAGAGGGAGAGAGAGCAGATC 58.491 57.143 0.00 0.00 0.00 2.75
938 1868 1.852309 AGAGGGAGAGAGAGCAGATCA 59.148 52.381 0.00 0.00 0.00 2.92
939 1869 2.244510 AGAGGGAGAGAGAGCAGATCAA 59.755 50.000 0.00 0.00 0.00 2.57
940 1870 3.030291 GAGGGAGAGAGAGCAGATCAAA 58.970 50.000 0.00 0.00 0.00 2.69
941 1871 3.448934 AGGGAGAGAGAGCAGATCAAAA 58.551 45.455 0.00 0.00 0.00 2.44
942 1872 3.843027 AGGGAGAGAGAGCAGATCAAAAA 59.157 43.478 0.00 0.00 0.00 1.94
943 1873 4.080975 AGGGAGAGAGAGCAGATCAAAAAG 60.081 45.833 0.00 0.00 0.00 2.27
944 1874 4.081198 GGGAGAGAGAGCAGATCAAAAAGA 60.081 45.833 0.00 0.00 0.00 2.52
945 1875 5.111293 GGAGAGAGAGCAGATCAAAAAGAG 58.889 45.833 0.00 0.00 0.00 2.85
946 1876 5.105392 GGAGAGAGAGCAGATCAAAAAGAGA 60.105 44.000 0.00 0.00 0.00 3.10
947 1877 5.969423 AGAGAGAGCAGATCAAAAAGAGAG 58.031 41.667 0.00 0.00 0.00 3.20
973 1903 3.448934 AGGGAGAGAGAGCAGATCAAAA 58.551 45.455 0.00 0.00 0.00 2.44
974 1904 3.843027 AGGGAGAGAGAGCAGATCAAAAA 59.157 43.478 0.00 0.00 0.00 1.94
1117 2049 2.275318 ACCAGCTCGTACGTACTACTC 58.725 52.381 22.55 9.50 0.00 2.59
1118 2050 2.093764 ACCAGCTCGTACGTACTACTCT 60.094 50.000 22.55 11.42 0.00 3.24
1119 2051 2.539274 CCAGCTCGTACGTACTACTCTC 59.461 54.545 22.55 6.65 0.00 3.20
1120 2052 3.446799 CAGCTCGTACGTACTACTCTCT 58.553 50.000 22.55 8.59 0.00 3.10
1121 2053 4.498850 CCAGCTCGTACGTACTACTCTCTA 60.499 50.000 22.55 0.00 0.00 2.43
1122 2054 4.440758 CAGCTCGTACGTACTACTCTCTAC 59.559 50.000 22.55 0.00 0.00 2.59
1123 2055 3.420576 GCTCGTACGTACTACTCTCTACG 59.579 52.174 22.55 8.86 41.24 3.51
1125 2057 5.729974 TCGTACGTACTACTCTCTACGTA 57.270 43.478 22.55 6.08 45.40 3.57
1162 2094 2.175202 CTCCTCTTGGTCAGCAGTACT 58.825 52.381 0.00 0.00 34.23 2.73
1163 2095 3.010250 TCTCCTCTTGGTCAGCAGTACTA 59.990 47.826 0.00 0.00 34.23 1.82
1164 2096 3.090037 TCCTCTTGGTCAGCAGTACTAC 58.910 50.000 0.00 0.00 34.23 2.73
1165 2097 2.166664 CCTCTTGGTCAGCAGTACTACC 59.833 54.545 5.70 5.70 0.00 3.18
1166 2098 2.826128 CTCTTGGTCAGCAGTACTACCA 59.174 50.000 10.61 10.61 40.19 3.25
1169 2125 1.207089 TGGTCAGCAGTACTACCATGC 59.793 52.381 10.61 3.73 37.09 4.06
1297 2270 2.555199 GTTGGTCCTTGATGAGATCCG 58.445 52.381 0.00 0.00 0.00 4.18
1335 2308 8.668510 ACTTACACTTGATGATGGATGATTAC 57.331 34.615 0.00 0.00 0.00 1.89
1336 2309 7.439356 ACTTACACTTGATGATGGATGATTACG 59.561 37.037 0.00 0.00 0.00 3.18
1337 2310 5.059161 ACACTTGATGATGGATGATTACGG 58.941 41.667 0.00 0.00 0.00 4.02
1342 2315 4.592778 TGATGATGGATGATTACGGAGGAA 59.407 41.667 0.00 0.00 0.00 3.36
1440 2423 3.057876 TGCTTATTAGTTTGCACCGGTTG 60.058 43.478 2.97 1.23 0.00 3.77
1509 2502 3.190744 TGTACGTAGATGCCTAGCTATGC 59.809 47.826 13.51 13.51 35.67 3.14
1539 2532 7.971455 ACTCAAAACTACACACTTTTACAGTC 58.029 34.615 0.00 0.00 30.92 3.51
1592 2585 0.178301 GCTAACCCTGGTAGGACAGC 59.822 60.000 0.00 0.00 37.67 4.40
1697 2724 0.598680 GCACTCGTCAGCTTCAGTGT 60.599 55.000 11.04 0.00 38.83 3.55
1701 2728 2.159099 ACTCGTCAGCTTCAGTGTTTCA 60.159 45.455 0.00 0.00 0.00 2.69
1702 2729 3.062763 CTCGTCAGCTTCAGTGTTTCAT 58.937 45.455 0.00 0.00 0.00 2.57
1704 2731 3.987868 TCGTCAGCTTCAGTGTTTCATAC 59.012 43.478 0.00 0.00 0.00 2.39
1705 2732 3.740832 CGTCAGCTTCAGTGTTTCATACA 59.259 43.478 0.00 0.00 0.00 2.29
1707 2734 5.445142 CGTCAGCTTCAGTGTTTCATACATC 60.445 44.000 0.00 0.00 39.39 3.06
1708 2735 5.641209 GTCAGCTTCAGTGTTTCATACATCT 59.359 40.000 0.00 0.00 39.39 2.90
1710 2737 6.712095 TCAGCTTCAGTGTTTCATACATCTTT 59.288 34.615 0.00 0.00 39.39 2.52
1711 2738 7.229306 TCAGCTTCAGTGTTTCATACATCTTTT 59.771 33.333 0.00 0.00 39.39 2.27
1712 2739 7.864379 CAGCTTCAGTGTTTCATACATCTTTTT 59.136 33.333 0.00 0.00 39.39 1.94
1741 2768 9.443323 TCTATTTTGATGACAAGTATTTTCGGA 57.557 29.630 0.00 0.00 37.32 4.55
1742 2769 9.490663 CTATTTTGATGACAAGTATTTTCGGAC 57.509 33.333 0.00 0.00 37.32 4.79
1743 2770 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1746 2992 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1748 2994 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
1750 2996 3.521947 AGTATTTTCGGACGGAGGAAG 57.478 47.619 0.00 0.00 0.00 3.46
1758 3004 1.069159 CGGACGGAGGAAGTATCGATG 60.069 57.143 8.54 0.00 0.00 3.84
1762 3008 0.038159 GGAGGAAGTATCGATGGGCG 60.038 60.000 8.54 0.00 42.69 6.13
1769 3019 1.005037 TATCGATGGGCGCATCACC 60.005 57.895 34.44 15.77 40.61 4.02
1892 3439 6.266786 TCCATCATGTACATACTGATACCGTT 59.733 38.462 8.32 0.00 0.00 4.44
2091 3658 6.496338 GGTAAGTTTCACCCAGAGTTTATG 57.504 41.667 0.00 0.00 0.00 1.90
2092 3659 5.106277 GGTAAGTTTCACCCAGAGTTTATGC 60.106 44.000 0.00 0.00 0.00 3.14
2093 3660 4.098914 AGTTTCACCCAGAGTTTATGCA 57.901 40.909 0.00 0.00 0.00 3.96
2094 3661 4.666512 AGTTTCACCCAGAGTTTATGCAT 58.333 39.130 3.79 3.79 0.00 3.96
2095 3662 4.460382 AGTTTCACCCAGAGTTTATGCATG 59.540 41.667 10.16 0.00 0.00 4.06
2096 3663 2.368439 TCACCCAGAGTTTATGCATGC 58.632 47.619 11.82 11.82 0.00 4.06
2166 3733 1.875514 GTCTCATGTTGCTGTCTTGCA 59.124 47.619 0.00 0.00 41.65 4.08
2253 3821 1.202830 ACATTTCGGGTAGTGTTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
2345 3941 4.257267 GTATAAATACGTAACCGGGCCT 57.743 45.455 6.32 0.00 38.78 5.19
2414 4016 7.277981 ACTTTATACTCAATCACATGAACGTCC 59.722 37.037 0.00 0.00 0.00 4.79
2415 4017 3.685139 ACTCAATCACATGAACGTCCT 57.315 42.857 0.00 0.00 0.00 3.85
2416 4018 4.008074 ACTCAATCACATGAACGTCCTT 57.992 40.909 0.00 0.00 0.00 3.36
2618 5545 3.871594 ACAAAGGCGCTCATGTATTCTAC 59.128 43.478 7.64 0.00 0.00 2.59
2630 5575 6.731164 TCATGTATTCTACACGCTCGATTTA 58.269 36.000 0.00 0.00 42.23 1.40
2631 5576 7.197703 TCATGTATTCTACACGCTCGATTTAA 58.802 34.615 0.00 0.00 42.23 1.52
2647 5592 8.335356 GCTCGATTTAATTTATACTGAAGCACA 58.665 33.333 0.00 0.00 0.00 4.57
2716 5661 0.454285 GCTTTTTATCAGCGCACGCA 60.454 50.000 18.24 0.00 44.88 5.24
2732 5677 2.375766 GCACTGGAGCTCGTTCGTG 61.376 63.158 7.83 12.35 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 149 1.203038 ACATGCCACCTCACCAATCAA 60.203 47.619 0.00 0.00 0.00 2.57
154 156 0.392193 CTCCAGACATGCCACCTCAC 60.392 60.000 0.00 0.00 0.00 3.51
168 170 4.397481 TGCACATATCTCAACTCTCCAG 57.603 45.455 0.00 0.00 0.00 3.86
218 220 8.796475 ACTAATTGTTTCTCTTAACATGCATGT 58.204 29.630 26.61 26.61 44.20 3.21
261 263 0.599558 CATGCCACCTCACCAAACAG 59.400 55.000 0.00 0.00 0.00 3.16
291 293 5.867903 ATTCCCACTATCTCAGTTCTCTG 57.132 43.478 0.00 0.00 42.54 3.35
298 300 8.408601 CCAAATTGTTAATTCCCACTATCTCAG 58.591 37.037 0.00 0.00 0.00 3.35
392 394 3.705072 GGGGGAATACTATGACCTATCCG 59.295 52.174 0.00 0.00 0.00 4.18
394 396 6.954352 AAAGGGGGAATACTATGACCTATC 57.046 41.667 0.00 0.00 0.00 2.08
464 470 8.524267 CAATAATAATACACGCGCACTAGATAG 58.476 37.037 5.73 0.00 0.00 2.08
479 485 9.221775 CCGACTTTGACTTTGCAATAATAATAC 57.778 33.333 0.00 0.00 0.00 1.89
487 1095 5.067283 AGTTTACCGACTTTGACTTTGCAAT 59.933 36.000 0.00 0.00 0.00 3.56
629 1242 7.648908 TGTAAACTTTGATCGAGTCTACGAAAA 59.351 33.333 2.44 0.00 45.16 2.29
641 1254 4.517453 TCAAACCCCTGTAAACTTTGATCG 59.483 41.667 0.00 0.00 0.00 3.69
795 1410 5.950549 ACGGATGTTAGGTATAGATGTAGGG 59.049 44.000 0.00 0.00 0.00 3.53
796 1411 6.183360 CGACGGATGTTAGGTATAGATGTAGG 60.183 46.154 0.00 0.00 0.00 3.18
798 1413 5.645067 CCGACGGATGTTAGGTATAGATGTA 59.355 44.000 8.64 0.00 0.00 2.29
799 1414 4.458295 CCGACGGATGTTAGGTATAGATGT 59.542 45.833 8.64 0.00 0.00 3.06
800 1415 4.674623 GCCGACGGATGTTAGGTATAGATG 60.675 50.000 20.50 0.00 0.00 2.90
801 1416 3.442977 GCCGACGGATGTTAGGTATAGAT 59.557 47.826 20.50 0.00 0.00 1.98
802 1417 2.816087 GCCGACGGATGTTAGGTATAGA 59.184 50.000 20.50 0.00 0.00 1.98
815 1430 2.124653 GGAGAGAGAGCCGACGGA 60.125 66.667 20.50 0.00 0.00 4.69
832 1447 0.465460 CGAGACTGGAGAGAGAGGGG 60.465 65.000 0.00 0.00 0.00 4.79
834 1449 1.101049 GGCGAGACTGGAGAGAGAGG 61.101 65.000 0.00 0.00 0.00 3.69
841 1456 5.336849 CCCTTATATAAAGGCGAGACTGGAG 60.337 48.000 0.00 0.00 36.10 3.86
842 1457 4.527038 CCCTTATATAAAGGCGAGACTGGA 59.473 45.833 0.00 0.00 36.10 3.86
845 1460 5.125739 CGATCCCTTATATAAAGGCGAGACT 59.874 44.000 5.36 0.00 36.10 3.24
846 1461 5.341617 CGATCCCTTATATAAAGGCGAGAC 58.658 45.833 5.36 4.00 36.10 3.36
847 1462 4.401519 CCGATCCCTTATATAAAGGCGAGA 59.598 45.833 5.36 0.21 36.10 4.04
848 1463 4.159879 ACCGATCCCTTATATAAAGGCGAG 59.840 45.833 5.36 2.74 36.10 5.03
849 1464 4.081862 CACCGATCCCTTATATAAAGGCGA 60.082 45.833 5.36 5.44 36.10 5.54
852 1467 5.623824 CGACCACCGATCCCTTATATAAAGG 60.624 48.000 3.96 3.96 41.76 3.11
864 1479 2.388232 GCACAACGACCACCGATCC 61.388 63.158 0.00 0.00 41.76 3.36
868 1798 2.892914 TGTGCACAACGACCACCG 60.893 61.111 19.28 0.00 45.44 4.94
882 1812 2.408032 GTGTTTTGCTTGTGTGTGTGTG 59.592 45.455 0.00 0.00 0.00 3.82
883 1813 2.035193 TGTGTTTTGCTTGTGTGTGTGT 59.965 40.909 0.00 0.00 0.00 3.72
911 1841 1.070758 CTCTCTCTCCCTCTCCTCTCG 59.929 61.905 0.00 0.00 0.00 4.04
919 1849 2.363306 TGATCTGCTCTCTCTCCCTC 57.637 55.000 0.00 0.00 0.00 4.30
920 1850 2.844654 TTGATCTGCTCTCTCTCCCT 57.155 50.000 0.00 0.00 0.00 4.20
921 1851 3.902881 TTTTGATCTGCTCTCTCTCCC 57.097 47.619 0.00 0.00 0.00 4.30
922 1852 5.083533 TCTTTTTGATCTGCTCTCTCTCC 57.916 43.478 0.00 0.00 0.00 3.71
923 1853 5.964758 TCTCTTTTTGATCTGCTCTCTCTC 58.035 41.667 0.00 0.00 0.00 3.20
924 1854 5.105228 CCTCTCTTTTTGATCTGCTCTCTCT 60.105 44.000 0.00 0.00 0.00 3.10
925 1855 5.111293 CCTCTCTTTTTGATCTGCTCTCTC 58.889 45.833 0.00 0.00 0.00 3.20
926 1856 4.080975 CCCTCTCTTTTTGATCTGCTCTCT 60.081 45.833 0.00 0.00 0.00 3.10
927 1857 4.081198 TCCCTCTCTTTTTGATCTGCTCTC 60.081 45.833 0.00 0.00 0.00 3.20
928 1858 3.843027 TCCCTCTCTTTTTGATCTGCTCT 59.157 43.478 0.00 0.00 0.00 4.09
929 1859 4.081198 TCTCCCTCTCTTTTTGATCTGCTC 60.081 45.833 0.00 0.00 0.00 4.26
930 1860 3.843027 TCTCCCTCTCTTTTTGATCTGCT 59.157 43.478 0.00 0.00 0.00 4.24
931 1861 4.190772 CTCTCCCTCTCTTTTTGATCTGC 58.809 47.826 0.00 0.00 0.00 4.26
932 1862 4.383989 CCCTCTCCCTCTCTTTTTGATCTG 60.384 50.000 0.00 0.00 0.00 2.90
933 1863 3.779738 CCCTCTCCCTCTCTTTTTGATCT 59.220 47.826 0.00 0.00 0.00 2.75
934 1864 3.777522 TCCCTCTCCCTCTCTTTTTGATC 59.222 47.826 0.00 0.00 0.00 2.92
935 1865 3.779738 CTCCCTCTCCCTCTCTTTTTGAT 59.220 47.826 0.00 0.00 0.00 2.57
936 1866 3.177228 CTCCCTCTCCCTCTCTTTTTGA 58.823 50.000 0.00 0.00 0.00 2.69
937 1867 3.177228 TCTCCCTCTCCCTCTCTTTTTG 58.823 50.000 0.00 0.00 0.00 2.44
938 1868 3.078305 TCTCTCCCTCTCCCTCTCTTTTT 59.922 47.826 0.00 0.00 0.00 1.94
939 1869 2.657459 TCTCTCCCTCTCCCTCTCTTTT 59.343 50.000 0.00 0.00 0.00 2.27
940 1870 2.244769 CTCTCTCCCTCTCCCTCTCTTT 59.755 54.545 0.00 0.00 0.00 2.52
941 1871 1.852965 CTCTCTCCCTCTCCCTCTCTT 59.147 57.143 0.00 0.00 0.00 2.85
942 1872 1.010793 TCTCTCTCCCTCTCCCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
943 1873 1.421646 CTCTCTCTCCCTCTCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
944 1874 1.522900 CTCTCTCTCCCTCTCCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
945 1875 0.178990 GCTCTCTCTCCCTCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
946 1876 0.923729 TGCTCTCTCTCCCTCTCCCT 60.924 60.000 0.00 0.00 0.00 4.20
947 1877 0.468029 CTGCTCTCTCTCCCTCTCCC 60.468 65.000 0.00 0.00 0.00 4.30
973 1903 1.852965 CTCTCTCCCTCTCCCTCTCTT 59.147 57.143 0.00 0.00 0.00 2.85
974 1904 1.010793 TCTCTCTCCCTCTCCCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1117 2049 5.699839 TGCATGCATGTATAGTACGTAGAG 58.300 41.667 26.79 0.00 0.00 2.43
1118 2050 5.699097 TGCATGCATGTATAGTACGTAGA 57.301 39.130 26.79 0.00 0.00 2.59
1119 2051 6.325596 AGATGCATGCATGTATAGTACGTAG 58.674 40.000 36.73 0.00 36.70 3.51
1120 2052 6.267496 AGATGCATGCATGTATAGTACGTA 57.733 37.500 36.73 2.01 36.70 3.57
1121 2053 5.139435 AGATGCATGCATGTATAGTACGT 57.861 39.130 36.73 10.02 36.70 3.57
1122 2054 4.564372 GGAGATGCATGCATGTATAGTACG 59.436 45.833 36.73 0.32 36.70 3.67
1123 2055 5.728471 AGGAGATGCATGCATGTATAGTAC 58.272 41.667 36.73 19.30 36.70 2.73
1124 2056 5.718607 AGAGGAGATGCATGCATGTATAGTA 59.281 40.000 36.73 4.21 36.70 1.82
1125 2057 4.531339 AGAGGAGATGCATGCATGTATAGT 59.469 41.667 36.73 18.55 36.70 2.12
1130 2062 2.298610 CAAGAGGAGATGCATGCATGT 58.701 47.619 36.73 32.63 36.70 3.21
1162 2094 2.481276 CCACGAATCGAGAAGCATGGTA 60.481 50.000 10.55 0.00 0.00 3.25
1163 2095 1.645034 CACGAATCGAGAAGCATGGT 58.355 50.000 10.55 0.00 0.00 3.55
1164 2096 0.933097 CCACGAATCGAGAAGCATGG 59.067 55.000 10.55 0.04 0.00 3.66
1165 2097 0.933097 CCCACGAATCGAGAAGCATG 59.067 55.000 10.55 0.00 0.00 4.06
1166 2098 0.179073 CCCCACGAATCGAGAAGCAT 60.179 55.000 10.55 0.00 0.00 3.79
1169 2125 3.347411 GTCCCCACGAATCGAGAAG 57.653 57.895 10.55 0.00 0.00 2.85
1335 2308 1.809684 GTGTTTTCCCTCTTCCTCCG 58.190 55.000 0.00 0.00 0.00 4.63
1336 2309 1.809684 CGTGTTTTCCCTCTTCCTCC 58.190 55.000 0.00 0.00 0.00 4.30
1337 2310 1.157585 GCGTGTTTTCCCTCTTCCTC 58.842 55.000 0.00 0.00 0.00 3.71
1342 2315 2.110213 TGCGCGTGTTTTCCCTCT 59.890 55.556 8.43 0.00 0.00 3.69
1440 2423 1.355971 TAACAGCCGCTTTCGTGATC 58.644 50.000 0.00 0.00 0.00 2.92
1509 2502 7.883229 AAAAGTGTGTAGTTTTGAGTTTTGG 57.117 32.000 0.00 0.00 37.88 3.28
1539 2532 3.181397 CGCTGGCAATTAAAATCACCTG 58.819 45.455 0.00 0.00 0.00 4.00
1592 2585 0.809241 GATGACAAGCTCTGCCCGAG 60.809 60.000 0.00 0.00 42.88 4.63
1715 2742 9.443323 TCCGAAAATACTTGTCATCAAAATAGA 57.557 29.630 0.00 0.00 32.87 1.98
1718 2745 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1722 2749 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1724 2751 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1726 2753 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1727 2754 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
1730 2757 2.830321 ACTTCCTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
1731 2758 3.242549 ACTTCCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
1734 2761 2.159338 CGATACTTCCTCCGTCCGAAAA 60.159 50.000 0.00 0.00 0.00 2.29
1735 2762 1.402968 CGATACTTCCTCCGTCCGAAA 59.597 52.381 0.00 0.00 0.00 3.46
1736 2763 1.019673 CGATACTTCCTCCGTCCGAA 58.980 55.000 0.00 0.00 0.00 4.30
1738 2765 1.069159 CATCGATACTTCCTCCGTCCG 60.069 57.143 0.00 0.00 0.00 4.79
1739 2766 1.269998 CCATCGATACTTCCTCCGTCC 59.730 57.143 0.00 0.00 0.00 4.79
1740 2767 1.269998 CCCATCGATACTTCCTCCGTC 59.730 57.143 0.00 0.00 0.00 4.79
1741 2768 1.329256 CCCATCGATACTTCCTCCGT 58.671 55.000 0.00 0.00 0.00 4.69
1742 2769 0.038159 GCCCATCGATACTTCCTCCG 60.038 60.000 0.00 0.00 0.00 4.63
1743 2770 0.038159 CGCCCATCGATACTTCCTCC 60.038 60.000 0.00 0.00 41.67 4.30
1746 2992 0.320771 ATGCGCCCATCGATACTTCC 60.321 55.000 4.18 0.00 41.67 3.46
1748 2994 3.217242 GATGCGCCCATCGATACTT 57.783 52.632 4.18 0.00 38.59 2.24
1844 3117 6.168164 GAGTGAACTCGTTGTACGTAGTAGC 61.168 48.000 0.00 0.00 43.14 3.58
1845 3118 5.312054 GAGTGAACTCGTTGTACGTAGTAG 58.688 45.833 0.00 0.00 43.14 2.57
1846 3119 4.152402 GGAGTGAACTCGTTGTACGTAGTA 59.848 45.833 0.00 0.00 42.62 1.82
1847 3120 3.058639 GGAGTGAACTCGTTGTACGTAGT 60.059 47.826 0.00 0.00 44.26 2.73
1848 3121 3.058708 TGGAGTGAACTCGTTGTACGTAG 60.059 47.826 0.00 0.00 43.76 3.51
1850 3123 1.677576 TGGAGTGAACTCGTTGTACGT 59.322 47.619 4.44 0.00 43.76 3.57
1904 3451 1.515519 TACGTTCAAGCTAGGCGCG 60.516 57.895 0.00 0.00 45.59 6.86
1934 3501 5.014808 TCAACGTTAATTACCTAGCTCCC 57.985 43.478 0.00 0.00 0.00 4.30
2084 3651 3.630168 TGGTACCATGCATGCATAAACT 58.370 40.909 31.73 16.35 34.91 2.66
2085 3652 3.381272 ACTGGTACCATGCATGCATAAAC 59.619 43.478 31.73 25.87 34.91 2.01
2087 3654 3.295585 ACTGGTACCATGCATGCATAA 57.704 42.857 31.73 17.69 34.91 1.90
2088 3655 4.639078 ATACTGGTACCATGCATGCATA 57.361 40.909 31.73 15.14 34.91 3.14
2089 3656 3.513909 ATACTGGTACCATGCATGCAT 57.486 42.857 27.46 27.46 37.08 3.96
2090 3657 4.639078 ATATACTGGTACCATGCATGCA 57.361 40.909 25.04 25.04 0.00 3.96
2091 3658 5.734720 ACTATATACTGGTACCATGCATGC 58.265 41.667 21.69 11.82 0.00 4.06
2092 3659 7.386059 TCAACTATATACTGGTACCATGCATG 58.614 38.462 20.19 20.19 0.00 4.06
2093 3660 7.553504 TCAACTATATACTGGTACCATGCAT 57.446 36.000 16.75 11.22 0.00 3.96
2094 3661 6.987403 TCAACTATATACTGGTACCATGCA 57.013 37.500 16.75 3.73 0.00 3.96
2126 3693 8.135382 TGAGACAACTTTCTTATACTTAGGCT 57.865 34.615 0.00 0.00 0.00 4.58
2239 3806 1.086696 CAATCTGCCAACACTACCCG 58.913 55.000 0.00 0.00 0.00 5.28
2253 3821 7.159372 ACACGTAAGAAAACTGGTATCAATCT 58.841 34.615 0.00 0.00 43.62 2.40
2349 3945 2.592102 AAACATGCCATGACCTGACT 57.408 45.000 12.53 0.00 0.00 3.41
2424 4026 0.036306 TCAGAGGACCTTTTTCCCGC 59.964 55.000 0.00 0.00 36.12 6.13
2457 4063 2.126467 CCGTGGAAAACTTACGAACGA 58.874 47.619 0.14 0.00 40.01 3.85
2530 4138 4.802051 GAATCCTGGCAGGGCGCA 62.802 66.667 32.23 14.54 45.17 6.09
2618 5545 7.527516 GCTTCAGTATAAATTAAATCGAGCGTG 59.472 37.037 0.00 0.00 0.00 5.34
2630 5575 4.399303 GCCCAGTGTGCTTCAGTATAAATT 59.601 41.667 0.00 0.00 0.00 1.82
2631 5576 3.947834 GCCCAGTGTGCTTCAGTATAAAT 59.052 43.478 0.00 0.00 0.00 1.40
2669 5614 5.047188 CGGAAAAACAAATTGCAGGTTACT 58.953 37.500 0.00 0.00 0.00 2.24
2716 5661 2.651361 CCACGAACGAGCTCCAGT 59.349 61.111 8.47 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.