Multiple sequence alignment - TraesCS4D01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G249800 chr4D 100.000 5047 0 0 1700 6746 418744449 418739403 0.000000e+00 9321.0
1 TraesCS4D01G249800 chr4D 100.000 1243 0 0 1 1243 418746148 418744906 0.000000e+00 2296.0
2 TraesCS4D01G249800 chr4D 81.599 538 91 8 235 767 484063104 484062570 8.030000e-119 438.0
3 TraesCS4D01G249800 chr4D 93.651 189 11 1 5699 5887 456251235 456251048 1.430000e-71 281.0
4 TraesCS4D01G249800 chr4B 94.540 4011 141 26 1700 5691 515140283 515144234 0.000000e+00 6122.0
5 TraesCS4D01G249800 chr4B 91.344 1213 80 8 56 1243 515139055 515140267 0.000000e+00 1635.0
6 TraesCS4D01G249800 chr4B 83.388 909 82 36 5878 6746 515144229 515145108 0.000000e+00 778.0
7 TraesCS4D01G249800 chr4B 76.108 519 118 6 250 766 466728271 466727757 4.010000e-67 267.0
8 TraesCS4D01G249800 chr4A 91.831 1469 106 9 4227 5685 46143221 46141757 0.000000e+00 2036.0
9 TraesCS4D01G249800 chr4A 92.794 1235 72 10 2890 4118 46144446 46143223 0.000000e+00 1772.0
10 TraesCS4D01G249800 chr4A 87.168 904 82 10 366 1242 46146390 46145494 0.000000e+00 996.0
11 TraesCS4D01G249800 chr4A 88.668 653 61 10 2225 2865 46145018 46144367 0.000000e+00 784.0
12 TraesCS4D01G249800 chr4A 90.966 476 22 8 1700 2172 46145477 46145020 7.430000e-174 621.0
13 TraesCS4D01G249800 chr4A 81.282 593 46 28 5991 6549 46141659 46141098 2.910000e-113 420.0
14 TraesCS4D01G249800 chr4A 79.223 592 104 11 180 767 537537823 537537247 1.760000e-105 394.0
15 TraesCS4D01G249800 chr4A 100.000 31 0 0 2863 2893 46144446 46144416 2.630000e-04 58.4
16 TraesCS4D01G249800 chr2D 80.936 598 102 11 175 768 317879247 317878658 4.770000e-126 462.0
17 TraesCS4D01G249800 chr2D 85.057 174 24 2 1 173 52695506 52695334 6.950000e-40 176.0
18 TraesCS4D01G249800 chr7B 95.357 280 10 2 1948 2227 597763566 597763842 6.210000e-120 442.0
19 TraesCS4D01G249800 chr7B 78.499 493 95 11 239 725 700358539 700358052 5.080000e-81 313.0
20 TraesCS4D01G249800 chr7B 96.089 179 6 1 5701 5878 14874774 14874952 2.380000e-74 291.0
21 TraesCS4D01G249800 chr7B 94.536 183 7 3 5699 5880 18199393 18199213 5.150000e-71 279.0
22 TraesCS4D01G249800 chr7B 96.629 89 3 0 2139 2227 709579215 709579127 1.520000e-31 148.0
23 TraesCS4D01G249800 chr5B 77.699 565 114 10 178 739 676912892 676912337 1.080000e-87 335.0
24 TraesCS4D01G249800 chr5B 87.861 173 18 1 1 170 281152558 281152730 4.130000e-47 200.0
25 TraesCS4D01G249800 chr5B 85.143 175 24 2 1 174 606585961 606585788 1.930000e-40 178.0
26 TraesCS4D01G249800 chr6D 77.202 579 126 6 184 760 462353877 462353303 3.900000e-87 333.0
27 TraesCS4D01G249800 chr3B 76.962 599 108 22 177 767 3265459 3264883 1.410000e-81 315.0
28 TraesCS4D01G249800 chr3B 87.209 172 20 2 1 170 173326192 173326021 1.920000e-45 195.0
29 TraesCS4D01G249800 chr5A 96.648 179 6 0 5699 5877 29678330 29678152 1.420000e-76 298.0
30 TraesCS4D01G249800 chr6A 94.565 184 9 1 5699 5882 494463277 494463095 3.980000e-72 283.0
31 TraesCS4D01G249800 chr6A 94.944 178 8 1 5699 5876 537876266 537876442 1.850000e-70 278.0
32 TraesCS4D01G249800 chr2B 94.565 184 8 2 5699 5882 771215315 771215134 3.980000e-72 283.0
33 TraesCS4D01G249800 chr2B 93.617 188 9 3 5694 5880 743583060 743582875 1.850000e-70 278.0
34 TraesCS4D01G249800 chr2B 86.145 166 23 0 8 173 4997662 4997497 5.380000e-41 180.0
35 TraesCS4D01G249800 chr3D 92.746 193 12 2 5699 5890 506177133 506177324 1.850000e-70 278.0
36 TraesCS4D01G249800 chr1D 86.550 171 22 1 2 172 216403617 216403786 3.210000e-43 187.0
37 TraesCS4D01G249800 chr7D 86.628 172 15 4 2 170 452691830 452691664 4.160000e-42 183.0
38 TraesCS4D01G249800 chr5D 85.465 172 25 0 1 172 238221526 238221355 5.380000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G249800 chr4D 418739403 418746148 6745 True 5808.500000 9321 100.000000 1 6746 2 chr4D.!!$R3 6745
1 TraesCS4D01G249800 chr4D 484062570 484063104 534 True 438.000000 438 81.599000 235 767 1 chr4D.!!$R2 532
2 TraesCS4D01G249800 chr4B 515139055 515145108 6053 False 2845.000000 6122 89.757333 56 6746 3 chr4B.!!$F1 6690
3 TraesCS4D01G249800 chr4B 466727757 466728271 514 True 267.000000 267 76.108000 250 766 1 chr4B.!!$R1 516
4 TraesCS4D01G249800 chr4A 46141098 46146390 5292 True 955.342857 2036 90.387000 366 6549 7 chr4A.!!$R2 6183
5 TraesCS4D01G249800 chr4A 537537247 537537823 576 True 394.000000 394 79.223000 180 767 1 chr4A.!!$R1 587
6 TraesCS4D01G249800 chr2D 317878658 317879247 589 True 462.000000 462 80.936000 175 768 1 chr2D.!!$R2 593
7 TraesCS4D01G249800 chr5B 676912337 676912892 555 True 335.000000 335 77.699000 178 739 1 chr5B.!!$R2 561
8 TraesCS4D01G249800 chr6D 462353303 462353877 574 True 333.000000 333 77.202000 184 760 1 chr6D.!!$R1 576
9 TraesCS4D01G249800 chr3B 3264883 3265459 576 True 315.000000 315 76.962000 177 767 1 chr3B.!!$R1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 690 0.036164 TGTTCTGGCGGCAATAGTGT 59.964 50.000 14.48 0.00 0.00 3.55 F
892 928 0.397957 GACCAAACCCAACCCAACCT 60.398 55.000 0.00 0.00 0.00 3.50 F
994 1030 1.684734 GGGAGGGACCGTGAGCTAA 60.685 63.158 0.00 0.00 40.11 3.09 F
1793 1844 2.045524 GAGGGAAGATCTGATCCAGCA 58.954 52.381 13.83 0.00 37.46 4.41 F
2366 2423 1.282930 GGCGACTGTCCGAACTGAAC 61.283 60.000 1.55 0.00 0.00 3.18 F
2979 3041 2.166907 AGACCATGACCAGGACTAGG 57.833 55.000 0.00 0.00 29.44 3.02 F
4595 4664 0.182299 GAATCCTCCCTGAGCTTGGG 59.818 60.000 16.97 16.97 45.90 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1775 0.382158 TCTCCTCGCTGTAATCGCAG 59.618 55.000 0.00 0.00 39.37 5.18 R
2187 2238 0.577269 GCGCATCGTAAAGTAGGCAG 59.423 55.000 0.30 0.00 0.00 4.85 R
2366 2423 1.132834 TCACTGCAGCACAAACACAAG 59.867 47.619 15.27 0.00 0.00 3.16 R
2999 3061 1.610522 GGCAAGATACATGGCATGACC 59.389 52.381 32.74 19.43 42.45 4.02 R
4131 4200 2.423185 TCGCCAAACTAGCATCCAAATG 59.577 45.455 0.00 0.00 35.87 2.32 R
4796 4872 2.108250 CAGGTTTCTCAAGGAGGGGAAA 59.892 50.000 0.00 0.00 0.00 3.13 R
5916 6003 0.166814 GCGCAGTGAGAAACATGGTC 59.833 55.000 0.30 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.500603 AACCCGTAGATATACTGCTTCG 57.499 45.455 0.00 0.00 0.00 3.79
23 24 2.818432 ACCCGTAGATATACTGCTTCGG 59.182 50.000 0.00 0.00 37.04 4.30
24 25 3.489180 CCGTAGATATACTGCTTCGGG 57.511 52.381 0.00 0.00 34.24 5.14
25 26 2.163815 CCGTAGATATACTGCTTCGGGG 59.836 54.545 0.00 0.00 34.24 5.73
26 27 2.163815 CGTAGATATACTGCTTCGGGGG 59.836 54.545 0.00 0.00 0.00 5.40
52 53 3.817655 GCGGGCCGCGGTAAAAAT 61.818 61.111 37.09 0.00 44.55 1.82
53 54 2.879168 CGGGCCGCGGTAAAAATT 59.121 55.556 28.70 0.00 0.00 1.82
54 55 1.213275 CGGGCCGCGGTAAAAATTT 59.787 52.632 28.70 0.00 0.00 1.82
55 56 0.388778 CGGGCCGCGGTAAAAATTTT 60.389 50.000 28.70 0.00 0.00 1.82
56 57 1.798283 GGGCCGCGGTAAAAATTTTT 58.202 45.000 28.70 19.44 0.00 1.94
57 58 2.670509 CGGGCCGCGGTAAAAATTTTTA 60.671 45.455 28.70 17.45 0.00 1.52
103 104 2.397044 TTCTGGCCAGAAAATTGGGT 57.603 45.000 39.82 0.00 43.79 4.51
108 109 0.171231 GCCAGAAAATTGGGTCGAGC 59.829 55.000 5.93 5.93 38.72 5.03
150 151 0.313043 CGGGTTGGCGAGATATACGT 59.687 55.000 0.00 0.00 0.00 3.57
165 166 7.361031 CGAGATATACGTGGTATGCTAGAGTTT 60.361 40.741 0.00 0.00 30.79 2.66
196 197 2.532843 AGACGGTTAGGGCAAACTCTA 58.467 47.619 2.56 0.00 0.00 2.43
286 290 1.602237 GGAGGGAAATCTCGGTGCA 59.398 57.895 0.00 0.00 34.74 4.57
591 600 0.928229 GACACGTGCACGAAGACTTT 59.072 50.000 42.94 18.38 43.02 2.66
604 613 3.676049 CGAAGACTTTCCGGATGTCATCA 60.676 47.826 28.35 3.53 35.47 3.07
678 690 0.036164 TGTTCTGGCGGCAATAGTGT 59.964 50.000 14.48 0.00 0.00 3.55
679 691 0.727398 GTTCTGGCGGCAATAGTGTC 59.273 55.000 14.48 0.00 0.00 3.67
681 693 1.078497 CTGGCGGCAATAGTGTCCA 60.078 57.895 14.48 3.48 0.00 4.02
689 701 2.627945 GCAATAGTGTCCATTCGGTGA 58.372 47.619 0.00 0.00 0.00 4.02
768 780 8.499162 GTGAATTTTCATAATAGACCTGATCCG 58.501 37.037 0.00 0.00 39.73 4.18
769 781 7.173218 TGAATTTTCATAATAGACCTGATCCGC 59.827 37.037 0.00 0.00 31.01 5.54
770 782 5.545063 TTTCATAATAGACCTGATCCGCA 57.455 39.130 0.00 0.00 0.00 5.69
771 783 5.545063 TTCATAATAGACCTGATCCGCAA 57.455 39.130 0.00 0.00 0.00 4.85
773 785 5.924356 TCATAATAGACCTGATCCGCAAAA 58.076 37.500 0.00 0.00 0.00 2.44
774 786 5.991606 TCATAATAGACCTGATCCGCAAAAG 59.008 40.000 0.00 0.00 0.00 2.27
778 790 3.690460 AGACCTGATCCGCAAAAGAAAT 58.310 40.909 0.00 0.00 0.00 2.17
779 791 4.082125 AGACCTGATCCGCAAAAGAAATT 58.918 39.130 0.00 0.00 0.00 1.82
837 873 1.068434 CAGTGGAACGTGGCCAAATTT 59.932 47.619 7.24 0.00 45.86 1.82
892 928 0.397957 GACCAAACCCAACCCAACCT 60.398 55.000 0.00 0.00 0.00 3.50
994 1030 1.684734 GGGAGGGACCGTGAGCTAA 60.685 63.158 0.00 0.00 40.11 3.09
1787 1838 3.265221 TGTTTGCTGAGGGAAGATCTGAT 59.735 43.478 0.00 0.00 0.00 2.90
1793 1844 2.045524 GAGGGAAGATCTGATCCAGCA 58.954 52.381 13.83 0.00 37.46 4.41
1821 1872 2.045926 GACGCTGCATTCCCCTGT 60.046 61.111 0.00 0.00 0.00 4.00
1874 1925 2.159382 CTTGGTAGGTTGCCGAATTGT 58.841 47.619 0.00 0.00 0.00 2.71
1881 1932 2.331893 TTGCCGAATTGTGCTCCCG 61.332 57.895 0.00 0.00 0.00 5.14
1891 1942 2.523168 TGCTCCCGGACACTGACA 60.523 61.111 0.73 0.00 0.00 3.58
1914 1965 5.122396 CAGTTGTAGGTTAGTTTCAGCATCC 59.878 44.000 0.00 0.00 0.00 3.51
1977 2028 5.975410 GGATCTATCCTTTGTTTGTCTCG 57.025 43.478 1.52 0.00 43.73 4.04
2261 2312 6.263168 GGTTGCATAAGATATTACTTGGTGCT 59.737 38.462 2.64 0.00 40.24 4.40
2366 2423 1.282930 GGCGACTGTCCGAACTGAAC 61.283 60.000 1.55 0.00 0.00 3.18
2584 2642 9.905713 TTACTCTCTCTTTTTATGTTGGCATAT 57.094 29.630 0.00 0.00 37.42 1.78
2755 2817 5.204292 ACCTGAGATATGTCAAGCTACAGA 58.796 41.667 3.90 0.00 31.70 3.41
2896 2958 5.831702 GATGCAATCTCAACCTGAAATCT 57.168 39.130 0.00 0.00 41.17 2.40
2897 2959 6.205101 GATGCAATCTCAACCTGAAATCTT 57.795 37.500 0.00 0.00 41.17 2.40
2898 2960 5.633830 TGCAATCTCAACCTGAAATCTTC 57.366 39.130 0.00 0.00 0.00 2.87
2899 2961 5.072055 TGCAATCTCAACCTGAAATCTTCA 58.928 37.500 0.00 0.00 38.17 3.02
2900 2962 5.535783 TGCAATCTCAACCTGAAATCTTCAA 59.464 36.000 0.00 0.00 39.58 2.69
2901 2963 6.091437 GCAATCTCAACCTGAAATCTTCAAG 58.909 40.000 0.00 0.00 39.58 3.02
2902 2964 6.072286 GCAATCTCAACCTGAAATCTTCAAGA 60.072 38.462 0.00 0.00 39.58 3.02
2903 2965 7.362747 GCAATCTCAACCTGAAATCTTCAAGAT 60.363 37.037 0.00 0.00 39.58 2.40
2904 2966 7.627298 ATCTCAACCTGAAATCTTCAAGATG 57.373 36.000 0.00 0.00 39.58 2.90
2905 2967 5.413833 TCTCAACCTGAAATCTTCAAGATGC 59.586 40.000 0.00 0.00 39.58 3.91
2906 2968 5.072055 TCAACCTGAAATCTTCAAGATGCA 58.928 37.500 0.00 2.01 39.58 3.96
2907 2969 5.535783 TCAACCTGAAATCTTCAAGATGCAA 59.464 36.000 0.00 0.00 39.58 4.08
2908 2970 6.209986 TCAACCTGAAATCTTCAAGATGCAAT 59.790 34.615 0.00 0.00 39.58 3.56
2909 2971 6.205101 ACCTGAAATCTTCAAGATGCAATC 57.795 37.500 0.00 0.00 39.58 2.67
2979 3041 2.166907 AGACCATGACCAGGACTAGG 57.833 55.000 0.00 0.00 29.44 3.02
2999 3061 9.651718 GACTAGGAAAAACTAATAAATCATGCG 57.348 33.333 0.00 0.00 0.00 4.73
3000 3062 8.621286 ACTAGGAAAAACTAATAAATCATGCGG 58.379 33.333 0.00 0.00 0.00 5.69
3001 3063 7.404671 AGGAAAAACTAATAAATCATGCGGT 57.595 32.000 0.00 0.00 0.00 5.68
3002 3064 7.480810 AGGAAAAACTAATAAATCATGCGGTC 58.519 34.615 0.00 0.00 0.00 4.79
3003 3065 7.122055 AGGAAAAACTAATAAATCATGCGGTCA 59.878 33.333 0.00 0.00 0.00 4.02
3004 3066 7.920682 GGAAAAACTAATAAATCATGCGGTCAT 59.079 33.333 0.00 0.00 0.00 3.06
3265 3327 6.598753 TTTGTGTACTGTTCAAGTTAGAGC 57.401 37.500 0.00 0.00 40.56 4.09
3312 3374 5.957771 ATTTCAGGGAAGTCTATGCTGTA 57.042 39.130 0.00 0.00 0.00 2.74
3572 3634 5.287226 GGCATGATTGAAGTGATGGATTTC 58.713 41.667 0.00 0.00 0.00 2.17
3573 3635 5.068723 GGCATGATTGAAGTGATGGATTTCT 59.931 40.000 0.00 0.00 0.00 2.52
4124 4193 7.448748 AGTATGGAATGTCTTTGTGTTTACC 57.551 36.000 0.00 0.00 0.00 2.85
4131 4200 4.370917 TGTCTTTGTGTTTACCGAGGTAC 58.629 43.478 0.74 0.00 0.00 3.34
4149 4218 4.949856 AGGTACATTTGGATGCTAGTTTGG 59.050 41.667 0.00 0.00 36.72 3.28
4582 4651 3.478540 GCTTTACTGGGCGAATCCT 57.521 52.632 0.00 0.00 34.39 3.24
4595 4664 0.182299 GAATCCTCCCTGAGCTTGGG 59.818 60.000 16.97 16.97 45.90 4.12
4636 4705 2.290960 ACCTGTAAACTTCCATCCCAGC 60.291 50.000 0.00 0.00 0.00 4.85
4638 4707 3.562176 CCTGTAAACTTCCATCCCAGCTT 60.562 47.826 0.00 0.00 0.00 3.74
4883 4965 2.433970 GAGGATGCTGTCTTCCTAAGCT 59.566 50.000 0.00 0.00 44.26 3.74
4907 4991 0.449388 GGCTGACTGCTACATTGTGC 59.551 55.000 0.00 2.16 42.39 4.57
4919 5003 3.339253 ACATTGTGCTCTGCAGATACA 57.661 42.857 22.78 22.78 40.08 2.29
5018 5102 4.530094 TCACAAGTTAAAGTCAACGCTG 57.470 40.909 0.00 0.00 33.50 5.18
5021 5105 5.005971 TCACAAGTTAAAGTCAACGCTGTAC 59.994 40.000 0.00 0.00 31.94 2.90
5029 5113 1.525619 GTCAACGCTGTACCAAGACAC 59.474 52.381 0.00 0.00 0.00 3.67
5053 5137 8.143835 CACCATCATAAACTCCAGTTTTCTTTT 58.856 33.333 9.92 0.00 45.07 2.27
5057 5141 6.836527 TCATAAACTCCAGTTTTCTTTTCCCA 59.163 34.615 9.92 0.00 45.07 4.37
5058 5142 7.508977 TCATAAACTCCAGTTTTCTTTTCCCAT 59.491 33.333 9.92 0.00 45.07 4.00
5076 5160 3.213506 CCATTGGGAAGATATCACGCAA 58.786 45.455 23.32 23.32 39.81 4.85
5116 5201 6.351711 TCAGAATCACCTGATTATCCTTGTG 58.648 40.000 0.38 0.00 44.14 3.33
5121 5206 6.367374 TCACCTGATTATCCTTGTGTGTTA 57.633 37.500 6.00 0.00 0.00 2.41
5197 5282 7.580910 AGTTCAGATCCCAAGATTGACATATT 58.419 34.615 0.00 0.00 30.90 1.28
5247 5332 9.140286 TCTAAAATTCTGTCTAGTGTTTGATCG 57.860 33.333 0.00 0.00 0.00 3.69
5280 5365 2.005451 CTCTTTCATCTGGTTCTGGCG 58.995 52.381 0.00 0.00 0.00 5.69
5290 5375 1.566018 GGTTCTGGCGTTCTCAACCG 61.566 60.000 0.00 0.00 0.00 4.44
5318 5403 4.599047 TTTTTGGCAGGTATTTGGACAG 57.401 40.909 0.00 0.00 0.00 3.51
5472 5558 1.443194 CGCAATTGCTGAGGTGCAC 60.443 57.895 26.86 8.80 43.20 4.57
5602 5689 1.303561 TCATGAAGTGTGGGCCTGC 60.304 57.895 4.53 0.00 0.00 4.85
5686 5773 2.423538 ACGCGGTATTTTAGGACGTACT 59.576 45.455 12.47 5.18 0.00 2.73
5691 5778 6.303259 CGCGGTATTTTAGGACGTACTTATAC 59.697 42.308 5.12 11.63 0.00 1.47
5692 5779 7.363431 GCGGTATTTTAGGACGTACTTATACT 58.637 38.462 5.12 0.00 0.00 2.12
5693 5780 7.862873 GCGGTATTTTAGGACGTACTTATACTT 59.137 37.037 5.12 0.00 0.00 2.24
5701 5788 9.672673 TTAGGACGTACTTATACTTACAAGTCT 57.327 33.333 5.12 0.00 40.37 3.24
5702 5789 7.983307 AGGACGTACTTATACTTACAAGTCTG 58.017 38.462 0.00 0.00 40.37 3.51
5703 5790 7.609532 AGGACGTACTTATACTTACAAGTCTGT 59.390 37.037 0.00 0.00 40.37 3.41
5704 5791 7.907563 GGACGTACTTATACTTACAAGTCTGTC 59.092 40.741 0.00 0.00 40.37 3.51
5705 5792 8.558973 ACGTACTTATACTTACAAGTCTGTCT 57.441 34.615 0.00 0.00 40.37 3.41
5706 5793 9.658799 ACGTACTTATACTTACAAGTCTGTCTA 57.341 33.333 0.00 0.00 40.37 2.59
5710 5797 9.176460 ACTTATACTTACAAGTCTGTCTAGGAC 57.824 37.037 0.00 0.00 40.37 3.85
5711 5798 9.175312 CTTATACTTACAAGTCTGTCTAGGACA 57.825 37.037 0.00 0.43 39.09 4.02
5713 5800 5.138276 ACTTACAAGTCTGTCTAGGACACA 58.862 41.667 0.00 0.00 38.35 3.72
5714 5801 5.775701 ACTTACAAGTCTGTCTAGGACACAT 59.224 40.000 0.00 0.00 38.35 3.21
5715 5802 4.792521 ACAAGTCTGTCTAGGACACATC 57.207 45.455 0.00 0.00 37.67 3.06
5716 5803 4.411927 ACAAGTCTGTCTAGGACACATCT 58.588 43.478 0.00 0.00 37.67 2.90
5717 5804 5.571285 ACAAGTCTGTCTAGGACACATCTA 58.429 41.667 0.00 0.00 37.67 1.98
5718 5805 5.650266 ACAAGTCTGTCTAGGACACATCTAG 59.350 44.000 0.00 0.00 37.67 2.43
5719 5806 5.702065 AGTCTGTCTAGGACACATCTAGA 57.298 43.478 0.00 0.00 37.67 2.43
5720 5807 6.260700 AGTCTGTCTAGGACACATCTAGAT 57.739 41.667 0.00 0.00 43.25 1.98
5721 5808 6.061441 AGTCTGTCTAGGACACATCTAGATG 58.939 44.000 27.63 27.63 43.25 2.90
5749 5836 8.011844 ACATAGTTATGTCACATCTAAGCTGA 57.988 34.615 0.00 0.00 42.96 4.26
5750 5837 8.646004 ACATAGTTATGTCACATCTAAGCTGAT 58.354 33.333 0.00 0.00 42.96 2.90
5751 5838 9.486497 CATAGTTATGTCACATCTAAGCTGATT 57.514 33.333 0.00 0.00 0.00 2.57
5753 5840 8.798859 AGTTATGTCACATCTAAGCTGATTTT 57.201 30.769 0.00 0.00 0.00 1.82
5754 5841 8.887717 AGTTATGTCACATCTAAGCTGATTTTC 58.112 33.333 0.00 0.00 0.00 2.29
5755 5842 8.668353 GTTATGTCACATCTAAGCTGATTTTCA 58.332 33.333 0.00 0.00 0.00 2.69
5756 5843 7.876936 ATGTCACATCTAAGCTGATTTTCAT 57.123 32.000 0.00 0.00 0.00 2.57
5757 5844 7.692460 TGTCACATCTAAGCTGATTTTCATT 57.308 32.000 0.00 0.00 0.00 2.57
5758 5845 7.755591 TGTCACATCTAAGCTGATTTTCATTC 58.244 34.615 0.00 0.00 0.00 2.67
5759 5846 7.609146 TGTCACATCTAAGCTGATTTTCATTCT 59.391 33.333 0.00 0.00 0.00 2.40
5760 5847 7.909121 GTCACATCTAAGCTGATTTTCATTCTG 59.091 37.037 0.00 0.00 0.00 3.02
5761 5848 7.066645 TCACATCTAAGCTGATTTTCATTCTGG 59.933 37.037 0.00 0.00 0.00 3.86
5762 5849 6.888632 ACATCTAAGCTGATTTTCATTCTGGT 59.111 34.615 0.00 0.00 0.00 4.00
5763 5850 7.395489 ACATCTAAGCTGATTTTCATTCTGGTT 59.605 33.333 0.00 0.00 36.88 3.67
5764 5851 7.149569 TCTAAGCTGATTTTCATTCTGGTTG 57.850 36.000 0.00 0.00 35.38 3.77
5765 5852 5.796424 AAGCTGATTTTCATTCTGGTTGT 57.204 34.783 0.00 0.00 33.39 3.32
5766 5853 5.130292 AGCTGATTTTCATTCTGGTTGTG 57.870 39.130 0.00 0.00 0.00 3.33
5767 5854 4.021719 AGCTGATTTTCATTCTGGTTGTGG 60.022 41.667 0.00 0.00 0.00 4.17
5768 5855 4.262164 GCTGATTTTCATTCTGGTTGTGGT 60.262 41.667 0.00 0.00 0.00 4.16
5769 5856 5.452078 TGATTTTCATTCTGGTTGTGGTC 57.548 39.130 0.00 0.00 0.00 4.02
5770 5857 5.139727 TGATTTTCATTCTGGTTGTGGTCT 58.860 37.500 0.00 0.00 0.00 3.85
5771 5858 6.303054 TGATTTTCATTCTGGTTGTGGTCTA 58.697 36.000 0.00 0.00 0.00 2.59
5772 5859 6.947733 TGATTTTCATTCTGGTTGTGGTCTAT 59.052 34.615 0.00 0.00 0.00 1.98
5773 5860 7.451255 TGATTTTCATTCTGGTTGTGGTCTATT 59.549 33.333 0.00 0.00 0.00 1.73
5774 5861 7.595819 TTTTCATTCTGGTTGTGGTCTATTT 57.404 32.000 0.00 0.00 0.00 1.40
5775 5862 7.595819 TTTCATTCTGGTTGTGGTCTATTTT 57.404 32.000 0.00 0.00 0.00 1.82
5776 5863 7.595819 TTCATTCTGGTTGTGGTCTATTTTT 57.404 32.000 0.00 0.00 0.00 1.94
5813 5900 5.876612 TTTTTGTTTCTTGTTGCTGCATT 57.123 30.435 1.84 0.00 0.00 3.56
5814 5901 6.974932 TTTTTGTTTCTTGTTGCTGCATTA 57.025 29.167 1.84 0.00 0.00 1.90
5815 5902 7.551035 TTTTTGTTTCTTGTTGCTGCATTAT 57.449 28.000 1.84 0.00 0.00 1.28
5816 5903 8.654230 TTTTTGTTTCTTGTTGCTGCATTATA 57.346 26.923 1.84 0.00 0.00 0.98
5817 5904 8.830201 TTTTGTTTCTTGTTGCTGCATTATAT 57.170 26.923 1.84 0.00 0.00 0.86
5818 5905 9.920133 TTTTGTTTCTTGTTGCTGCATTATATA 57.080 25.926 1.84 0.00 0.00 0.86
5824 5911 9.518906 TTCTTGTTGCTGCATTATATATTTGTG 57.481 29.630 1.84 0.00 0.00 3.33
5825 5912 8.136800 TCTTGTTGCTGCATTATATATTTGTGG 58.863 33.333 1.84 0.00 0.00 4.17
5826 5913 6.747125 TGTTGCTGCATTATATATTTGTGGG 58.253 36.000 1.84 0.00 0.00 4.61
5827 5914 6.548993 TGTTGCTGCATTATATATTTGTGGGA 59.451 34.615 1.84 0.00 0.00 4.37
5828 5915 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
5829 5916 5.183713 TGCTGCATTATATATTTGTGGGAGC 59.816 40.000 0.00 0.00 0.00 4.70
5830 5917 5.416952 GCTGCATTATATATTTGTGGGAGCT 59.583 40.000 0.00 0.00 0.00 4.09
5831 5918 6.071728 GCTGCATTATATATTTGTGGGAGCTT 60.072 38.462 0.00 0.00 0.00 3.74
5832 5919 7.121168 GCTGCATTATATATTTGTGGGAGCTTA 59.879 37.037 0.00 0.00 0.00 3.09
5833 5920 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
5834 5921 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
5835 5922 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
5838 5925 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
5839 5926 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
5840 5927 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
5841 5928 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
5842 5929 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
5843 5930 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
5844 5931 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
5845 5932 2.703007 GGGAGCTTAGATGTGACATCCT 59.297 50.000 21.05 11.37 0.00 3.24
5846 5933 3.135530 GGGAGCTTAGATGTGACATCCTT 59.864 47.826 21.05 7.22 0.00 3.36
5847 5934 4.345257 GGGAGCTTAGATGTGACATCCTTA 59.655 45.833 21.05 6.22 0.00 2.69
5848 5935 5.163301 GGGAGCTTAGATGTGACATCCTTAA 60.163 44.000 21.05 13.11 0.00 1.85
5849 5936 6.349300 GGAGCTTAGATGTGACATCCTTAAA 58.651 40.000 21.05 10.18 0.00 1.52
5850 5937 6.823689 GGAGCTTAGATGTGACATCCTTAAAA 59.176 38.462 21.05 8.00 0.00 1.52
5851 5938 7.336931 GGAGCTTAGATGTGACATCCTTAAAAA 59.663 37.037 21.05 6.46 0.00 1.94
5878 5965 7.845483 CATCTAGATGTGAATTAGACAAACCG 58.155 38.462 22.42 0.00 34.23 4.44
5879 5966 6.931838 TCTAGATGTGAATTAGACAAACCGT 58.068 36.000 0.00 0.00 0.00 4.83
5880 5967 8.058667 TCTAGATGTGAATTAGACAAACCGTA 57.941 34.615 0.00 0.00 0.00 4.02
5881 5968 8.692710 TCTAGATGTGAATTAGACAAACCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
5882 5969 7.539712 AGATGTGAATTAGACAAACCGTATG 57.460 36.000 0.00 0.00 0.00 2.39
5883 5970 7.327975 AGATGTGAATTAGACAAACCGTATGA 58.672 34.615 0.00 0.00 0.00 2.15
5884 5971 7.987458 AGATGTGAATTAGACAAACCGTATGAT 59.013 33.333 0.00 0.00 0.00 2.45
5885 5972 7.302350 TGTGAATTAGACAAACCGTATGATG 57.698 36.000 0.00 0.00 0.00 3.07
5886 5973 7.100409 TGTGAATTAGACAAACCGTATGATGA 58.900 34.615 0.00 0.00 0.00 2.92
5887 5974 7.768582 TGTGAATTAGACAAACCGTATGATGAT 59.231 33.333 0.00 0.00 0.00 2.45
5888 5975 8.064222 GTGAATTAGACAAACCGTATGATGATG 58.936 37.037 0.00 0.00 0.00 3.07
5919 6006 9.193133 TGTATACTAAGTAGTATTACGTCGACC 57.807 37.037 14.57 0.00 44.75 4.79
5929 6016 3.646611 TTACGTCGACCATGTTTCTCA 57.353 42.857 10.58 0.00 0.00 3.27
5940 6027 1.378531 TGTTTCTCACTGCGCTGTTT 58.621 45.000 18.01 0.00 0.00 2.83
5945 6032 3.038788 TCTCACTGCGCTGTTTAATGA 57.961 42.857 18.01 10.42 0.00 2.57
5964 6051 9.743937 TTTAATGATAAGTTTACGCGTACAAAG 57.256 29.630 20.44 0.00 0.00 2.77
5965 6052 5.766702 TGATAAGTTTACGCGTACAAAGG 57.233 39.130 20.44 0.00 0.00 3.11
5966 6053 2.955607 AAGTTTACGCGTACAAAGGC 57.044 45.000 20.44 2.81 0.00 4.35
5967 6054 1.868469 AGTTTACGCGTACAAAGGCA 58.132 45.000 20.44 0.00 36.26 4.75
5968 6055 1.528161 AGTTTACGCGTACAAAGGCAC 59.472 47.619 20.44 7.15 36.26 5.01
5976 6070 2.080693 CGTACAAAGGCACCTGCATAA 58.919 47.619 0.00 0.00 44.36 1.90
5981 6075 5.937975 ACAAAGGCACCTGCATAAAATAT 57.062 34.783 0.00 0.00 44.36 1.28
5982 6076 5.663456 ACAAAGGCACCTGCATAAAATATG 58.337 37.500 0.00 0.00 44.36 1.78
5989 6083 6.144402 GGCACCTGCATAAAATATGAAAATCG 59.856 38.462 0.00 0.00 44.36 3.34
6022 6118 2.766263 AGCCAGAATTACGATCCTGTCA 59.234 45.455 0.00 0.00 0.00 3.58
6058 6154 1.608590 GCTGTGCTGCTTTTTCCTGTA 59.391 47.619 0.00 0.00 0.00 2.74
6139 6246 2.829914 CCATGGATGGTGTGGCCG 60.830 66.667 5.56 0.00 43.05 6.13
6172 6286 0.665835 TGTGTGGCCAACGACATTTC 59.334 50.000 7.24 0.00 0.00 2.17
6178 6292 0.243636 GCCAACGACATTTCCCTTGG 59.756 55.000 0.00 0.00 35.44 3.61
6215 6329 3.507162 TGATCTGGACTTTTGGAAGCA 57.493 42.857 0.00 0.00 36.29 3.91
6221 6335 2.693074 TGGACTTTTGGAAGCAAACTCC 59.307 45.455 0.00 0.00 36.29 3.85
6226 6340 0.762418 TTGGAAGCAAACTCCGAGGA 59.238 50.000 0.00 0.00 0.00 3.71
6254 6368 4.382320 CGCTCGAAACCGGGGGAA 62.382 66.667 6.32 0.00 42.24 3.97
6265 6379 2.851045 GGGGGAAAAGTGGGAGCA 59.149 61.111 0.00 0.00 0.00 4.26
6388 6503 1.878088 CAATCAGGAAGATGGCGATGG 59.122 52.381 0.00 0.00 36.96 3.51
6403 6518 1.879380 CGATGGTGCAGGTGAGAAAAA 59.121 47.619 0.00 0.00 0.00 1.94
6417 6532 4.051922 TGAGAAAAAGAGACGAACTGAGC 58.948 43.478 0.00 0.00 0.00 4.26
6423 6538 2.509569 AGAGACGAACTGAGCTGAGAA 58.490 47.619 7.36 0.00 0.00 2.87
6431 6546 0.108898 CTGAGCTGAGAACCAGGACG 60.109 60.000 0.00 0.00 43.13 4.79
6433 6548 1.882989 GAGCTGAGAACCAGGACGCT 61.883 60.000 0.00 0.00 43.13 5.07
6434 6549 1.739562 GCTGAGAACCAGGACGCTG 60.740 63.158 0.00 0.00 43.13 5.18
6435 6550 1.739562 CTGAGAACCAGGACGCTGC 60.740 63.158 0.00 0.00 39.23 5.25
6437 6552 1.446966 GAGAACCAGGACGCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
6453 6568 0.458025 GCTCTGCAGGCTTTCATTGC 60.458 55.000 15.13 1.40 38.30 3.56
6468 6595 1.741706 CATTGCCAGGAGACACATGAC 59.258 52.381 0.00 0.00 31.40 3.06
6473 6600 2.831333 CCAGGAGACACATGACTATGC 58.169 52.381 0.00 0.00 37.85 3.14
6486 6625 1.021390 ACTATGCGCTGCCAACAGTC 61.021 55.000 9.73 0.00 46.30 3.51
6516 6655 4.183686 CGGCTGCGGCAAGGAATG 62.184 66.667 21.31 0.00 40.87 2.67
6537 6680 6.791887 ATGCATACATACATACTGTCAAGC 57.208 37.500 0.00 0.00 33.67 4.01
6549 6692 0.109643 TGTCAAGCGCACATGCATTC 60.110 50.000 11.47 0.00 42.21 2.67
6552 6695 2.713967 AAGCGCACATGCATTCCCC 61.714 57.895 11.47 0.00 42.21 4.81
6554 6697 2.788640 GCGCACATGCATTCCCCAT 61.789 57.895 0.30 0.00 42.21 4.00
6555 6698 1.361271 CGCACATGCATTCCCCATC 59.639 57.895 0.00 0.00 42.21 3.51
6559 6702 0.757935 ACATGCATTCCCCATCCTGC 60.758 55.000 0.00 0.00 35.21 4.85
6562 6705 1.530183 GCATTCCCCATCCTGCTCC 60.530 63.158 0.00 0.00 0.00 4.70
6563 6706 1.228063 CATTCCCCATCCTGCTCCG 60.228 63.158 0.00 0.00 0.00 4.63
6566 6709 1.497309 TTCCCCATCCTGCTCCGTTT 61.497 55.000 0.00 0.00 0.00 3.60
6567 6710 1.000896 CCCCATCCTGCTCCGTTTT 60.001 57.895 0.00 0.00 0.00 2.43
6568 6711 0.254747 CCCCATCCTGCTCCGTTTTA 59.745 55.000 0.00 0.00 0.00 1.52
6569 6712 1.133792 CCCCATCCTGCTCCGTTTTAT 60.134 52.381 0.00 0.00 0.00 1.40
6570 6713 2.105821 CCCCATCCTGCTCCGTTTTATA 59.894 50.000 0.00 0.00 0.00 0.98
6572 6715 4.019681 CCCCATCCTGCTCCGTTTTATATA 60.020 45.833 0.00 0.00 0.00 0.86
6577 6720 7.095187 CCATCCTGCTCCGTTTTATATACTTTC 60.095 40.741 0.00 0.00 0.00 2.62
6592 6735 9.754382 TTATATACTTTCATGACCTTAACGTCC 57.246 33.333 0.00 0.00 31.35 4.79
6593 6736 4.345859 ACTTTCATGACCTTAACGTCCA 57.654 40.909 0.00 0.00 31.35 4.02
6594 6737 4.906618 ACTTTCATGACCTTAACGTCCAT 58.093 39.130 0.00 0.00 31.35 3.41
6621 6772 2.978010 GCTGGTGTTGGTGGTCCG 60.978 66.667 0.00 0.00 36.30 4.79
6627 6778 1.153353 GTGTTGGTGGTCCGTGTATG 58.847 55.000 0.00 0.00 36.30 2.39
6631 6782 1.868713 TGGTGGTCCGTGTATGGTAT 58.131 50.000 0.00 0.00 36.30 2.73
6632 6783 3.029483 TGGTGGTCCGTGTATGGTATA 57.971 47.619 0.00 0.00 36.30 1.47
6633 6784 2.694628 TGGTGGTCCGTGTATGGTATAC 59.305 50.000 0.00 0.00 36.30 1.47
6634 6785 2.287788 GGTGGTCCGTGTATGGTATACG 60.288 54.545 0.00 0.00 41.98 3.06
6639 6790 2.787601 CGTGTATGGTATACGGCTGT 57.212 50.000 2.42 2.42 39.23 4.40
6640 6791 3.088194 CGTGTATGGTATACGGCTGTT 57.912 47.619 1.99 0.00 39.23 3.16
6641 6792 2.792674 CGTGTATGGTATACGGCTGTTG 59.207 50.000 1.99 0.00 39.23 3.33
6642 6793 3.128349 GTGTATGGTATACGGCTGTTGG 58.872 50.000 1.99 0.00 0.00 3.77
6643 6794 2.767394 TGTATGGTATACGGCTGTTGGT 59.233 45.455 1.99 0.00 0.00 3.67
6644 6795 3.959449 TGTATGGTATACGGCTGTTGGTA 59.041 43.478 1.99 0.00 0.00 3.25
6645 6796 4.589798 TGTATGGTATACGGCTGTTGGTAT 59.410 41.667 1.99 0.00 34.04 2.73
6646 6797 3.738830 TGGTATACGGCTGTTGGTATC 57.261 47.619 1.99 0.00 32.05 2.24
6647 6798 3.302161 TGGTATACGGCTGTTGGTATCT 58.698 45.455 1.99 0.00 32.05 1.98
6648 6799 3.319972 TGGTATACGGCTGTTGGTATCTC 59.680 47.826 1.99 0.00 32.05 2.75
6649 6800 3.573110 GGTATACGGCTGTTGGTATCTCT 59.427 47.826 1.99 0.00 32.05 3.10
6650 6801 3.735237 ATACGGCTGTTGGTATCTCTG 57.265 47.619 1.99 0.00 0.00 3.35
6651 6802 1.267121 ACGGCTGTTGGTATCTCTGT 58.733 50.000 0.00 0.00 0.00 3.41
6711 6862 2.693069 CCAGGCGGTTATGATCATCTC 58.307 52.381 12.53 6.49 0.00 2.75
6712 6863 2.037641 CCAGGCGGTTATGATCATCTCA 59.962 50.000 12.53 0.00 38.53 3.27
6713 6864 3.494924 CCAGGCGGTTATGATCATCTCAA 60.495 47.826 12.53 0.00 37.44 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.261909 CCGAAGCAGTATATCTACGGGTTT 60.262 45.833 7.14 0.00 41.63 3.27
1 2 3.255149 CCGAAGCAGTATATCTACGGGTT 59.745 47.826 5.72 5.72 43.35 4.11
4 5 2.163815 CCCCGAAGCAGTATATCTACGG 59.836 54.545 0.00 0.00 39.02 4.02
5 6 2.163815 CCCCCGAAGCAGTATATCTACG 59.836 54.545 0.00 0.00 32.82 3.51
36 37 0.388778 AAAATTTTTACCGCGGCCCG 60.389 50.000 28.58 0.00 0.00 6.13
37 38 1.798283 AAAAATTTTTACCGCGGCCC 58.202 45.000 28.58 0.00 0.00 5.80
38 39 3.976468 GTAAAAATTTTTACCGCGGCC 57.024 42.857 30.80 13.41 44.07 6.13
50 51 8.857216 CGTATACTCGTCTGACTTGTAAAAATT 58.143 33.333 6.21 0.00 0.00 1.82
51 52 7.487189 CCGTATACTCGTCTGACTTGTAAAAAT 59.513 37.037 6.21 0.00 0.00 1.82
52 53 6.803320 CCGTATACTCGTCTGACTTGTAAAAA 59.197 38.462 6.21 0.00 0.00 1.94
53 54 6.317088 CCGTATACTCGTCTGACTTGTAAAA 58.683 40.000 6.21 0.41 0.00 1.52
54 55 5.163723 CCCGTATACTCGTCTGACTTGTAAA 60.164 44.000 6.21 0.00 0.00 2.01
55 56 4.333649 CCCGTATACTCGTCTGACTTGTAA 59.666 45.833 6.21 0.00 0.00 2.41
56 57 3.873361 CCCGTATACTCGTCTGACTTGTA 59.127 47.826 6.21 8.83 0.00 2.41
57 58 2.681848 CCCGTATACTCGTCTGACTTGT 59.318 50.000 6.21 6.96 0.00 3.16
58 59 2.541178 GCCCGTATACTCGTCTGACTTG 60.541 54.545 6.21 1.12 0.00 3.16
59 60 1.674962 GCCCGTATACTCGTCTGACTT 59.325 52.381 6.21 0.00 0.00 3.01
60 61 1.134159 AGCCCGTATACTCGTCTGACT 60.134 52.381 6.21 0.00 0.00 3.41
61 62 1.263752 GAGCCCGTATACTCGTCTGAC 59.736 57.143 0.56 0.00 0.00 3.51
62 63 1.140452 AGAGCCCGTATACTCGTCTGA 59.860 52.381 0.56 0.00 37.99 3.27
63 64 1.264557 CAGAGCCCGTATACTCGTCTG 59.735 57.143 0.56 4.52 37.99 3.51
64 65 1.134159 ACAGAGCCCGTATACTCGTCT 60.134 52.381 0.56 0.00 37.99 4.18
121 122 0.667993 CGCCAACCCGCATAATTCAT 59.332 50.000 0.00 0.00 0.00 2.57
122 123 0.393132 TCGCCAACCCGCATAATTCA 60.393 50.000 0.00 0.00 0.00 2.57
137 138 2.163815 AGCATACCACGTATATCTCGCC 59.836 50.000 0.00 0.00 0.00 5.54
165 166 4.685575 GCCCTAACCGTCTAGAGTTAGAGA 60.686 50.000 23.69 1.03 45.41 3.10
196 197 0.179000 GTCGATGAAGCATGGAGGGT 59.821 55.000 0.00 0.00 29.84 4.34
286 290 6.848451 ACATAAACAAATAACCGAAGCGAAT 58.152 32.000 0.00 0.00 0.00 3.34
318 325 3.248266 ACGCACCTACGATGACTTAAAC 58.752 45.455 0.00 0.00 36.70 2.01
322 329 0.179171 CGACGCACCTACGATGACTT 60.179 55.000 0.00 0.00 36.70 3.01
327 334 2.408022 GAGCGACGCACCTACGAT 59.592 61.111 23.70 0.00 36.70 3.73
348 355 2.125106 AAGAAGCGTCGCCATCCC 60.125 61.111 14.86 0.00 0.00 3.85
604 613 0.678048 GGAGCCGGCTTGAACTTGAT 60.678 55.000 33.34 3.09 0.00 2.57
678 690 3.384789 AGATTTCGAGATCACCGAATGGA 59.615 43.478 17.33 8.84 44.15 3.41
679 691 3.722147 AGATTTCGAGATCACCGAATGG 58.278 45.455 17.33 0.00 44.15 3.16
708 720 9.593134 ACAAAGCAACTCAAACATAATAAACAA 57.407 25.926 0.00 0.00 0.00 2.83
781 793 9.989394 GCATTCTTTTCGTTTACAAAATAAGAC 57.011 29.630 0.00 0.00 0.00 3.01
782 794 9.959749 AGCATTCTTTTCGTTTACAAAATAAGA 57.040 25.926 0.00 0.00 0.00 2.10
785 797 9.522804 ACAAGCATTCTTTTCGTTTACAAAATA 57.477 25.926 0.00 0.00 0.00 1.40
787 799 7.820044 ACAAGCATTCTTTTCGTTTACAAAA 57.180 28.000 0.00 0.00 0.00 2.44
788 800 7.820044 AACAAGCATTCTTTTCGTTTACAAA 57.180 28.000 0.00 0.00 0.00 2.83
789 801 7.820044 AAACAAGCATTCTTTTCGTTTACAA 57.180 28.000 0.00 0.00 0.00 2.41
791 803 7.996551 GCTAAAACAAGCATTCTTTTCGTTTAC 59.003 33.333 0.00 0.00 42.30 2.01
837 873 4.501714 GACCGGTGATGCGCGGTA 62.502 66.667 14.63 0.00 41.74 4.02
877 913 0.178944 GCCTAGGTTGGGTTGGGTTT 60.179 55.000 11.31 0.00 0.00 3.27
994 1030 3.721706 GGGCAGGCCAGCACTAGT 61.722 66.667 22.80 0.00 37.98 2.57
1732 1775 0.382158 TCTCCTCGCTGTAATCGCAG 59.618 55.000 0.00 0.00 39.37 5.18
1745 1788 0.678950 GCTACAGAGCCCATCTCCTC 59.321 60.000 0.00 0.00 43.49 3.71
1746 1789 2.833244 GCTACAGAGCCCATCTCCT 58.167 57.895 0.00 0.00 43.49 3.69
1774 1825 2.187239 TGCTGGATCAGATCTTCCCT 57.813 50.000 10.36 0.00 32.44 4.20
1787 1838 4.569023 CCTACGCGCGATGCTGGA 62.569 66.667 39.36 10.77 43.27 3.86
1821 1872 3.569194 TCAGCACCTCTAACAAACCAA 57.431 42.857 0.00 0.00 0.00 3.67
1874 1925 2.523168 TGTCAGTGTCCGGGAGCA 60.523 61.111 0.00 0.00 0.00 4.26
1881 1932 3.470645 AACCTACAACTGTCAGTGTCC 57.529 47.619 6.18 0.00 0.00 4.02
1891 1942 5.246307 GGATGCTGAAACTAACCTACAACT 58.754 41.667 0.00 0.00 0.00 3.16
1914 1965 2.724708 GCAGCGTCTCAGCTTCACG 61.725 63.158 4.78 4.78 46.80 4.35
1977 2028 8.118607 GCGAATTTAACCACCTGTAGTAATAAC 58.881 37.037 0.00 0.00 0.00 1.89
2187 2238 0.577269 GCGCATCGTAAAGTAGGCAG 59.423 55.000 0.30 0.00 0.00 4.85
2194 2245 2.472861 CACCAGATAGCGCATCGTAAAG 59.527 50.000 11.47 3.70 38.81 1.85
2261 2312 6.240894 ACAGACAAATTTCTCCTGCTATCAA 58.759 36.000 9.61 0.00 0.00 2.57
2268 2325 8.887717 CCTCTATTAACAGACAAATTTCTCCTG 58.112 37.037 8.59 8.59 0.00 3.86
2358 2415 3.853671 CAGCACAAACACAAGTTCAGTTC 59.146 43.478 0.00 0.00 36.84 3.01
2366 2423 1.132834 TCACTGCAGCACAAACACAAG 59.867 47.619 15.27 0.00 0.00 3.16
2755 2817 7.840931 AGAAAGTTGTTCAAGGAATGACTTTT 58.159 30.769 16.52 9.25 38.41 2.27
2892 2954 5.950549 AGGTTGAGATTGCATCTTGAAGATT 59.049 36.000 4.67 0.00 40.38 2.40
2893 2955 5.357314 CAGGTTGAGATTGCATCTTGAAGAT 59.643 40.000 0.97 0.97 40.38 2.40
2894 2956 4.698780 CAGGTTGAGATTGCATCTTGAAGA 59.301 41.667 0.00 0.00 40.38 2.87
2895 2957 4.698780 TCAGGTTGAGATTGCATCTTGAAG 59.301 41.667 0.00 0.00 40.38 3.02
2896 2958 4.654915 TCAGGTTGAGATTGCATCTTGAA 58.345 39.130 0.00 0.00 40.38 2.69
2897 2959 4.290711 TCAGGTTGAGATTGCATCTTGA 57.709 40.909 0.00 0.00 40.38 3.02
2898 2960 4.698780 TCTTCAGGTTGAGATTGCATCTTG 59.301 41.667 0.00 0.00 40.38 3.02
2899 2961 4.914983 TCTTCAGGTTGAGATTGCATCTT 58.085 39.130 0.00 0.00 40.38 2.40
2900 2962 4.564782 TCTTCAGGTTGAGATTGCATCT 57.435 40.909 0.00 0.00 43.70 2.90
2901 2963 4.699257 AGTTCTTCAGGTTGAGATTGCATC 59.301 41.667 0.00 0.00 0.00 3.91
2902 2964 4.458295 CAGTTCTTCAGGTTGAGATTGCAT 59.542 41.667 0.00 0.00 0.00 3.96
2903 2965 3.817084 CAGTTCTTCAGGTTGAGATTGCA 59.183 43.478 0.00 0.00 0.00 4.08
2904 2966 3.365767 GCAGTTCTTCAGGTTGAGATTGC 60.366 47.826 0.00 0.00 0.00 3.56
2905 2967 3.817084 TGCAGTTCTTCAGGTTGAGATTG 59.183 43.478 0.00 0.00 0.00 2.67
2906 2968 4.070716 CTGCAGTTCTTCAGGTTGAGATT 58.929 43.478 5.25 0.00 0.00 2.40
2907 2969 3.326006 TCTGCAGTTCTTCAGGTTGAGAT 59.674 43.478 14.67 0.00 0.00 2.75
2908 2970 2.700371 TCTGCAGTTCTTCAGGTTGAGA 59.300 45.455 14.67 0.00 0.00 3.27
2909 2971 2.805099 GTCTGCAGTTCTTCAGGTTGAG 59.195 50.000 14.67 0.00 0.00 3.02
2910 2972 2.170397 TGTCTGCAGTTCTTCAGGTTGA 59.830 45.455 14.67 0.00 0.00 3.18
2911 2973 2.564771 TGTCTGCAGTTCTTCAGGTTG 58.435 47.619 14.67 0.00 0.00 3.77
2912 2974 2.945668 GTTGTCTGCAGTTCTTCAGGTT 59.054 45.455 14.67 0.00 0.00 3.50
2913 2975 2.565841 GTTGTCTGCAGTTCTTCAGGT 58.434 47.619 14.67 0.00 0.00 4.00
2914 2976 1.876156 GGTTGTCTGCAGTTCTTCAGG 59.124 52.381 14.67 0.00 0.00 3.86
2915 2977 2.564771 TGGTTGTCTGCAGTTCTTCAG 58.435 47.619 14.67 0.00 0.00 3.02
2916 2978 2.708216 TGGTTGTCTGCAGTTCTTCA 57.292 45.000 14.67 5.72 0.00 3.02
2917 2979 3.364366 CGAATGGTTGTCTGCAGTTCTTC 60.364 47.826 14.67 7.53 0.00 2.87
2918 2980 2.549754 CGAATGGTTGTCTGCAGTTCTT 59.450 45.455 14.67 0.00 0.00 2.52
2979 3041 8.856490 ATGACCGCATGATTTATTAGTTTTTC 57.144 30.769 0.00 0.00 32.31 2.29
2999 3061 1.610522 GGCAAGATACATGGCATGACC 59.389 52.381 32.74 19.43 42.45 4.02
3000 3062 2.579873 AGGCAAGATACATGGCATGAC 58.420 47.619 32.74 21.26 45.08 3.06
3001 3063 2.953648 CAAGGCAAGATACATGGCATGA 59.046 45.455 32.74 16.92 42.48 3.07
3002 3064 2.691526 ACAAGGCAAGATACATGGCATG 59.308 45.455 25.31 25.31 45.08 4.06
3003 3065 3.022557 ACAAGGCAAGATACATGGCAT 57.977 42.857 0.00 0.00 45.08 4.40
3004 3066 2.512692 ACAAGGCAAGATACATGGCA 57.487 45.000 0.00 0.00 45.08 4.92
3005 3067 3.545703 AGTACAAGGCAAGATACATGGC 58.454 45.455 0.00 0.00 43.17 4.40
3006 3068 5.185454 TGAAGTACAAGGCAAGATACATGG 58.815 41.667 0.00 0.00 0.00 3.66
3312 3374 5.431731 TGTAGGGAATGGACCAACTATTGAT 59.568 40.000 0.00 0.00 30.00 2.57
3573 3635 9.724839 GCTAAAACACTACAAACTTGACATTAA 57.275 29.630 0.00 0.00 0.00 1.40
3695 3760 6.817765 ACGTAAATTCAGAAACCATGACAT 57.182 33.333 0.00 0.00 0.00 3.06
3717 3782 8.994170 GTTCCTAAATTCTGGCTAATGATCTAC 58.006 37.037 0.00 0.00 0.00 2.59
3910 3976 7.280205 AGCCTTTAGTCTGATAAAATAACCACG 59.720 37.037 0.00 0.00 0.00 4.94
4124 4193 4.060038 ACTAGCATCCAAATGTACCTCG 57.940 45.455 0.00 0.00 35.18 4.63
4131 4200 2.423185 TCGCCAAACTAGCATCCAAATG 59.577 45.455 0.00 0.00 35.87 2.32
4242 4311 5.798125 TCTGAACCATAATGCCAACAAAA 57.202 34.783 0.00 0.00 0.00 2.44
4432 4501 2.563179 AGGCACAGAAACTGAGACGTAT 59.437 45.455 5.76 0.00 35.29 3.06
4595 4664 4.991687 AGGTGACGAAGATTTTTGAGAGTC 59.008 41.667 0.00 0.00 0.00 3.36
4636 4705 7.488187 TTCATGTGAACTTGAGAGAAAGAAG 57.512 36.000 0.00 0.00 32.66 2.85
4638 4707 7.864108 TTTTCATGTGAACTTGAGAGAAAGA 57.136 32.000 0.00 0.00 33.13 2.52
4796 4872 2.108250 CAGGTTTCTCAAGGAGGGGAAA 59.892 50.000 0.00 0.00 0.00 3.13
4865 4947 4.664150 ACTAGCTTAGGAAGACAGCATC 57.336 45.455 0.00 0.00 35.88 3.91
4919 5003 8.199449 CACTCCAGCCAATTGATTATTGTTAAT 58.801 33.333 7.12 0.00 41.74 1.40
5000 5084 4.271533 TGGTACAGCGTTGACTTTAACTTG 59.728 41.667 6.16 0.00 0.00 3.16
5015 5099 2.472695 TGATGGTGTCTTGGTACAGC 57.527 50.000 0.00 0.00 45.79 4.40
5018 5102 5.585047 GGAGTTTATGATGGTGTCTTGGTAC 59.415 44.000 0.00 0.00 0.00 3.34
5021 5105 4.588899 TGGAGTTTATGATGGTGTCTTGG 58.411 43.478 0.00 0.00 0.00 3.61
5029 5113 7.814587 GGAAAAGAAAACTGGAGTTTATGATGG 59.185 37.037 5.22 0.00 46.47 3.51
5057 5141 5.913137 TTTTTGCGTGATATCTTCCCAAT 57.087 34.783 3.98 0.00 0.00 3.16
5081 5165 4.163839 CAGGTGATTCTGATTCTCCCTTCT 59.836 45.833 13.94 0.00 36.93 2.85
5082 5166 4.163078 TCAGGTGATTCTGATTCTCCCTTC 59.837 45.833 13.94 0.00 38.70 3.46
5092 5176 6.070021 ACACAAGGATAATCAGGTGATTCTGA 60.070 38.462 8.49 0.00 46.32 3.27
5093 5177 6.037940 CACACAAGGATAATCAGGTGATTCTG 59.962 42.308 8.49 3.67 43.17 3.02
5095 5179 5.882557 ACACACAAGGATAATCAGGTGATTC 59.117 40.000 8.49 0.00 43.17 2.52
5116 5201 1.200020 GGACAAGTGCCTGCATAACAC 59.800 52.381 0.00 5.92 34.48 3.32
5121 5206 2.512692 TATTGGACAAGTGCCTGCAT 57.487 45.000 0.00 0.00 0.00 3.96
5197 5282 0.110295 TTAAGCAGCAGGGCTCACAA 59.890 50.000 0.00 0.00 45.07 3.33
5247 5332 6.260493 CCAGATGAAAGAGGAAGATTCACATC 59.740 42.308 0.00 0.00 36.03 3.06
5280 5365 5.095490 CCAAAAATCATAGCGGTTGAGAAC 58.905 41.667 0.00 0.00 0.00 3.01
5290 5375 5.754890 CCAAATACCTGCCAAAAATCATAGC 59.245 40.000 0.00 0.00 0.00 2.97
5437 5523 6.645705 CAATTGCGCACGTAGAATAATTCTA 58.354 36.000 11.12 0.00 41.14 2.10
5472 5558 4.336153 TCAATGTACCTGCAGCAATACATG 59.664 41.667 25.12 20.36 38.09 3.21
5569 5655 0.537188 CATGAGCCTGGTTAGACCGT 59.463 55.000 0.00 0.00 42.58 4.83
5574 5660 3.005554 CACACTTCATGAGCCTGGTTAG 58.994 50.000 0.00 0.00 0.00 2.34
5581 5668 2.048603 GGCCCACACTTCATGAGCC 61.049 63.158 4.34 4.34 36.08 4.70
5662 5749 0.299597 GTCCTAAAATACCGCGTGCG 59.700 55.000 4.92 7.38 39.44 5.34
5686 5773 8.954350 GTGTCCTAGACAGACTTGTAAGTATAA 58.046 37.037 0.00 0.00 43.57 0.98
5691 5778 5.707242 TGTGTCCTAGACAGACTTGTAAG 57.293 43.478 0.00 0.00 43.57 2.34
5692 5779 6.010850 AGATGTGTCCTAGACAGACTTGTAA 58.989 40.000 0.00 0.00 43.57 2.41
5693 5780 5.571285 AGATGTGTCCTAGACAGACTTGTA 58.429 41.667 0.00 0.00 43.57 2.41
5694 5781 4.411927 AGATGTGTCCTAGACAGACTTGT 58.588 43.478 0.00 0.00 43.57 3.16
5695 5782 5.883115 TCTAGATGTGTCCTAGACAGACTTG 59.117 44.000 0.00 0.68 43.57 3.16
5696 5783 6.068461 TCTAGATGTGTCCTAGACAGACTT 57.932 41.667 0.00 0.00 43.57 3.01
5697 5784 5.702065 TCTAGATGTGTCCTAGACAGACT 57.298 43.478 0.00 1.46 43.57 3.24
5698 5785 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
5725 5812 9.486497 AATCAGCTTAGATGTGACATAACTATG 57.514 33.333 0.00 0.92 39.55 2.23
5727 5814 9.890629 AAAATCAGCTTAGATGTGACATAACTA 57.109 29.630 0.00 0.00 0.00 2.24
5728 5815 8.798859 AAAATCAGCTTAGATGTGACATAACT 57.201 30.769 0.00 0.00 0.00 2.24
5729 5816 8.668353 TGAAAATCAGCTTAGATGTGACATAAC 58.332 33.333 0.00 0.00 0.00 1.89
5730 5817 8.791327 TGAAAATCAGCTTAGATGTGACATAA 57.209 30.769 0.00 0.00 0.00 1.90
5731 5818 8.969260 ATGAAAATCAGCTTAGATGTGACATA 57.031 30.769 0.00 0.00 0.00 2.29
5732 5819 7.876936 ATGAAAATCAGCTTAGATGTGACAT 57.123 32.000 0.00 0.00 0.00 3.06
5733 5820 7.609146 AGAATGAAAATCAGCTTAGATGTGACA 59.391 33.333 0.00 0.00 0.00 3.58
5734 5821 7.909121 CAGAATGAAAATCAGCTTAGATGTGAC 59.091 37.037 0.00 0.00 39.69 3.67
5735 5822 7.066645 CCAGAATGAAAATCAGCTTAGATGTGA 59.933 37.037 0.00 0.00 39.69 3.58
5736 5823 7.148120 ACCAGAATGAAAATCAGCTTAGATGTG 60.148 37.037 0.00 0.00 39.69 3.21
5737 5824 6.888632 ACCAGAATGAAAATCAGCTTAGATGT 59.111 34.615 0.00 0.00 39.69 3.06
5738 5825 7.330900 ACCAGAATGAAAATCAGCTTAGATG 57.669 36.000 0.00 0.00 39.69 2.90
5739 5826 7.395489 ACAACCAGAATGAAAATCAGCTTAGAT 59.605 33.333 0.00 0.00 39.69 1.98
5740 5827 6.716628 ACAACCAGAATGAAAATCAGCTTAGA 59.283 34.615 0.00 0.00 39.69 2.10
5741 5828 6.805271 CACAACCAGAATGAAAATCAGCTTAG 59.195 38.462 0.00 0.00 39.69 2.18
5742 5829 6.294675 CCACAACCAGAATGAAAATCAGCTTA 60.295 38.462 0.00 0.00 39.69 3.09
5743 5830 5.510179 CCACAACCAGAATGAAAATCAGCTT 60.510 40.000 0.00 0.00 39.69 3.74
5744 5831 4.021719 CCACAACCAGAATGAAAATCAGCT 60.022 41.667 0.00 0.00 39.69 4.24
5745 5832 4.240096 CCACAACCAGAATGAAAATCAGC 58.760 43.478 0.00 0.00 39.69 4.26
5746 5833 5.242393 AGACCACAACCAGAATGAAAATCAG 59.758 40.000 0.00 0.00 39.69 2.90
5747 5834 5.139727 AGACCACAACCAGAATGAAAATCA 58.860 37.500 0.00 0.00 39.69 2.57
5748 5835 5.712152 AGACCACAACCAGAATGAAAATC 57.288 39.130 0.00 0.00 39.69 2.17
5749 5836 7.781324 AATAGACCACAACCAGAATGAAAAT 57.219 32.000 0.00 0.00 39.69 1.82
5750 5837 7.595819 AAATAGACCACAACCAGAATGAAAA 57.404 32.000 0.00 0.00 39.69 2.29
5751 5838 7.595819 AAAATAGACCACAACCAGAATGAAA 57.404 32.000 0.00 0.00 39.69 2.69
5752 5839 7.595819 AAAAATAGACCACAACCAGAATGAA 57.404 32.000 0.00 0.00 39.69 2.57
5791 5878 5.876612 AATGCAGCAACAAGAAACAAAAA 57.123 30.435 0.00 0.00 0.00 1.94
5792 5879 8.830201 ATATAATGCAGCAACAAGAAACAAAA 57.170 26.923 0.00 0.00 0.00 2.44
5798 5885 9.518906 CACAAATATATAATGCAGCAACAAGAA 57.481 29.630 0.00 0.00 0.00 2.52
5799 5886 8.136800 CCACAAATATATAATGCAGCAACAAGA 58.863 33.333 0.00 0.00 0.00 3.02
5800 5887 7.383029 CCCACAAATATATAATGCAGCAACAAG 59.617 37.037 0.00 0.00 0.00 3.16
5801 5888 7.069208 TCCCACAAATATATAATGCAGCAACAA 59.931 33.333 0.00 0.00 0.00 2.83
5802 5889 6.548993 TCCCACAAATATATAATGCAGCAACA 59.451 34.615 0.00 0.00 0.00 3.33
5803 5890 6.980593 TCCCACAAATATATAATGCAGCAAC 58.019 36.000 0.00 0.00 0.00 4.17
5804 5891 6.294675 GCTCCCACAAATATATAATGCAGCAA 60.295 38.462 0.00 0.00 0.00 3.91
5805 5892 5.183713 GCTCCCACAAATATATAATGCAGCA 59.816 40.000 0.00 0.00 0.00 4.41
5806 5893 5.416952 AGCTCCCACAAATATATAATGCAGC 59.583 40.000 0.00 0.00 0.00 5.25
5807 5894 7.458409 AAGCTCCCACAAATATATAATGCAG 57.542 36.000 0.00 0.00 0.00 4.41
5808 5895 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
5809 5896 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
5812 5899 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
5813 5900 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
5814 5901 7.880195 GTCACATCTAAGCTCCCACAAATATAT 59.120 37.037 0.00 0.00 0.00 0.86
5815 5902 7.147567 TGTCACATCTAAGCTCCCACAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
5816 5903 6.058183 GTCACATCTAAGCTCCCACAAATAT 58.942 40.000 0.00 0.00 0.00 1.28
5817 5904 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
5818 5905 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
5819 5906 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
5820 5907 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
5821 5908 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
5822 5909 3.462021 GATGTCACATCTAAGCTCCCAC 58.538 50.000 10.81 0.00 0.00 4.61
5823 5910 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
5824 5911 2.703007 AGGATGTCACATCTAAGCTCCC 59.297 50.000 17.46 0.00 0.00 4.30
5825 5912 4.414337 AAGGATGTCACATCTAAGCTCC 57.586 45.455 17.46 0.18 0.00 4.70
5826 5913 7.849804 TTTTAAGGATGTCACATCTAAGCTC 57.150 36.000 17.46 0.00 0.00 4.09
5853 5940 7.492669 ACGGTTTGTCTAATTCACATCTAGATG 59.507 37.037 27.63 27.63 44.15 2.90
5854 5941 7.556844 ACGGTTTGTCTAATTCACATCTAGAT 58.443 34.615 0.00 0.00 0.00 1.98
5855 5942 6.931838 ACGGTTTGTCTAATTCACATCTAGA 58.068 36.000 0.00 0.00 0.00 2.43
5856 5943 8.755941 CATACGGTTTGTCTAATTCACATCTAG 58.244 37.037 0.00 0.00 0.00 2.43
5857 5944 8.471609 TCATACGGTTTGTCTAATTCACATCTA 58.528 33.333 0.00 0.00 0.00 1.98
5858 5945 7.327975 TCATACGGTTTGTCTAATTCACATCT 58.672 34.615 0.00 0.00 0.00 2.90
5859 5946 7.534085 TCATACGGTTTGTCTAATTCACATC 57.466 36.000 0.00 0.00 0.00 3.06
5860 5947 7.768582 TCATCATACGGTTTGTCTAATTCACAT 59.231 33.333 0.00 0.00 0.00 3.21
5861 5948 7.100409 TCATCATACGGTTTGTCTAATTCACA 58.900 34.615 0.00 0.00 0.00 3.58
5862 5949 7.534085 TCATCATACGGTTTGTCTAATTCAC 57.466 36.000 0.00 0.00 0.00 3.18
5863 5950 7.768582 ACATCATCATACGGTTTGTCTAATTCA 59.231 33.333 0.00 0.00 0.00 2.57
5864 5951 8.142994 ACATCATCATACGGTTTGTCTAATTC 57.857 34.615 0.00 0.00 0.00 2.17
5865 5952 9.778741 ATACATCATCATACGGTTTGTCTAATT 57.221 29.630 0.00 0.00 0.00 1.40
5868 5955 9.855021 CATATACATCATCATACGGTTTGTCTA 57.145 33.333 0.00 0.00 0.00 2.59
5869 5956 8.367911 ACATATACATCATCATACGGTTTGTCT 58.632 33.333 0.00 0.00 0.00 3.41
5870 5957 8.534333 ACATATACATCATCATACGGTTTGTC 57.466 34.615 0.00 0.00 0.00 3.18
5898 5985 6.540189 ACATGGTCGACGTAATACTACTTAGT 59.460 38.462 9.92 0.00 40.24 2.24
5899 5986 6.952743 ACATGGTCGACGTAATACTACTTAG 58.047 40.000 9.92 0.00 0.00 2.18
5901 5988 5.824904 ACATGGTCGACGTAATACTACTT 57.175 39.130 9.92 0.00 0.00 2.24
5909 5996 3.005050 AGTGAGAAACATGGTCGACGTAA 59.995 43.478 9.92 0.00 0.00 3.18
5910 5997 2.555325 AGTGAGAAACATGGTCGACGTA 59.445 45.455 9.92 1.05 0.00 3.57
5912 5999 1.721389 CAGTGAGAAACATGGTCGACG 59.279 52.381 9.92 0.00 0.00 5.12
5913 6000 1.461127 GCAGTGAGAAACATGGTCGAC 59.539 52.381 7.13 7.13 0.00 4.20
5914 6001 1.795768 GCAGTGAGAAACATGGTCGA 58.204 50.000 0.00 0.00 0.00 4.20
5915 6002 0.439985 CGCAGTGAGAAACATGGTCG 59.560 55.000 0.00 0.00 0.00 4.79
5916 6003 0.166814 GCGCAGTGAGAAACATGGTC 59.833 55.000 0.30 0.00 0.00 4.02
5917 6004 0.250467 AGCGCAGTGAGAAACATGGT 60.250 50.000 11.47 0.00 0.00 3.55
5918 6005 0.167470 CAGCGCAGTGAGAAACATGG 59.833 55.000 11.47 0.00 0.00 3.66
5919 6006 0.870393 ACAGCGCAGTGAGAAACATG 59.130 50.000 11.47 0.00 0.00 3.21
5929 6016 5.880054 AACTTATCATTAAACAGCGCAGT 57.120 34.783 11.47 4.25 0.00 4.40
5940 6027 7.464444 GCCTTTGTACGCGTAAACTTATCATTA 60.464 37.037 22.44 3.69 0.00 1.90
5945 6032 3.995705 TGCCTTTGTACGCGTAAACTTAT 59.004 39.130 22.44 0.00 0.00 1.73
5964 6051 6.144402 CGATTTTCATATTTTATGCAGGTGCC 59.856 38.462 0.00 0.00 41.18 5.01
5965 6052 6.144402 CCGATTTTCATATTTTATGCAGGTGC 59.856 38.462 0.00 0.00 42.50 5.01
5966 6053 7.167968 CACCGATTTTCATATTTTATGCAGGTG 59.832 37.037 0.00 0.00 36.40 4.00
5967 6054 7.068103 TCACCGATTTTCATATTTTATGCAGGT 59.932 33.333 0.00 0.00 0.00 4.00
5968 6055 7.424803 TCACCGATTTTCATATTTTATGCAGG 58.575 34.615 0.00 0.00 0.00 4.85
5976 6070 8.292444 TCTGGATTTCACCGATTTTCATATTT 57.708 30.769 0.00 0.00 0.00 1.40
5981 6075 3.440173 GCTCTGGATTTCACCGATTTTCA 59.560 43.478 0.00 0.00 0.00 2.69
5982 6076 3.181496 GGCTCTGGATTTCACCGATTTTC 60.181 47.826 0.00 0.00 0.00 2.29
5989 6083 2.496899 TTCTGGCTCTGGATTTCACC 57.503 50.000 0.00 0.00 0.00 4.02
6022 6118 2.094182 CACAGCCTGTACACTATTCCGT 60.094 50.000 0.00 0.00 0.00 4.69
6058 6154 1.153208 ACGCCTCTCCGTCGTAGAT 60.153 57.895 0.00 0.00 40.67 1.98
6139 6246 2.411290 CACACACAAACACCGGCC 59.589 61.111 0.00 0.00 0.00 6.13
6172 6286 3.710722 AGTGGAGCGAGCCAAGGG 61.711 66.667 0.00 0.00 40.20 3.95
6178 6292 1.812922 CATGTCCAGTGGAGCGAGC 60.813 63.158 13.61 0.20 29.39 5.03
6215 6329 2.290260 TGCATTCATGTCCTCGGAGTTT 60.290 45.455 4.02 0.00 0.00 2.66
6221 6335 1.086067 AGCGTGCATTCATGTCCTCG 61.086 55.000 0.00 0.00 0.00 4.63
6226 6340 1.135972 GTTTCGAGCGTGCATTCATGT 60.136 47.619 0.00 0.00 0.00 3.21
6254 6368 1.615392 GCATGTTCTTGCTCCCACTTT 59.385 47.619 0.00 0.00 39.57 2.66
6280 6394 2.663196 GTCTTACGGCCAGCCTGT 59.337 61.111 2.24 9.00 0.00 4.00
6388 6503 2.221981 CGTCTCTTTTTCTCACCTGCAC 59.778 50.000 0.00 0.00 0.00 4.57
6403 6518 2.192664 TCTCAGCTCAGTTCGTCTCT 57.807 50.000 0.00 0.00 0.00 3.10
6417 6532 1.739562 GCAGCGTCCTGGTTCTCAG 60.740 63.158 0.00 0.00 43.00 3.35
6433 6548 0.885879 CAATGAAAGCCTGCAGAGCA 59.114 50.000 23.46 11.62 36.92 4.26
6434 6549 0.458025 GCAATGAAAGCCTGCAGAGC 60.458 55.000 17.39 16.92 36.09 4.09
6435 6550 3.715854 GCAATGAAAGCCTGCAGAG 57.284 52.632 17.39 6.56 36.09 3.35
6446 6561 2.040145 TCATGTGTCTCCTGGCAATGAA 59.960 45.455 0.00 0.00 0.00 2.57
6447 6562 1.629861 TCATGTGTCTCCTGGCAATGA 59.370 47.619 0.00 0.00 0.00 2.57
6448 6563 1.741706 GTCATGTGTCTCCTGGCAATG 59.258 52.381 0.00 0.00 0.00 2.82
6449 6564 1.632409 AGTCATGTGTCTCCTGGCAAT 59.368 47.619 0.00 0.00 0.00 3.56
6450 6565 1.059098 AGTCATGTGTCTCCTGGCAA 58.941 50.000 0.00 0.00 0.00 4.52
6453 6568 2.800985 CGCATAGTCATGTGTCTCCTGG 60.801 54.545 0.00 0.00 37.79 4.45
6460 6587 1.091771 GGCAGCGCATAGTCATGTGT 61.092 55.000 11.47 0.00 43.33 3.72
6468 6595 0.742281 AGACTGTTGGCAGCGCATAG 60.742 55.000 11.47 0.00 46.30 2.23
6473 6600 0.167470 CAATCAGACTGTTGGCAGCG 59.833 55.000 1.59 0.00 46.30 5.18
6486 6625 1.783031 GCAGCCGCTCATCCAATCAG 61.783 60.000 0.00 0.00 34.30 2.90
6537 6680 1.361271 GATGGGGAATGCATGTGCG 59.639 57.895 0.00 0.00 45.83 5.34
6549 6692 0.254747 TAAAACGGAGCAGGATGGGG 59.745 55.000 0.00 0.00 35.86 4.96
6552 6695 7.441157 TGAAAGTATATAAAACGGAGCAGGATG 59.559 37.037 0.00 0.00 40.87 3.51
6554 6697 6.880484 TGAAAGTATATAAAACGGAGCAGGA 58.120 36.000 0.00 0.00 0.00 3.86
6555 6698 7.441157 TCATGAAAGTATATAAAACGGAGCAGG 59.559 37.037 0.00 0.00 0.00 4.85
6559 6702 8.888579 AGGTCATGAAAGTATATAAAACGGAG 57.111 34.615 0.00 0.00 0.00 4.63
6566 6709 9.754382 GGACGTTAAGGTCATGAAAGTATATAA 57.246 33.333 25.07 0.00 38.70 0.98
6567 6710 8.916062 TGGACGTTAAGGTCATGAAAGTATATA 58.084 33.333 25.07 0.00 38.70 0.86
6568 6711 7.788026 TGGACGTTAAGGTCATGAAAGTATAT 58.212 34.615 25.07 0.00 38.70 0.86
6569 6712 7.172868 TGGACGTTAAGGTCATGAAAGTATA 57.827 36.000 25.07 1.19 38.70 1.47
6570 6713 6.045072 TGGACGTTAAGGTCATGAAAGTAT 57.955 37.500 25.07 0.00 38.70 2.12
6572 6715 4.345859 TGGACGTTAAGGTCATGAAAGT 57.654 40.909 25.07 0.00 38.70 2.66
6577 6720 4.750098 GGTATCATGGACGTTAAGGTCATG 59.250 45.833 25.07 23.07 38.70 3.07
6588 6731 1.942657 CCAGCAAAGGTATCATGGACG 59.057 52.381 0.00 0.00 0.00 4.79
6589 6732 2.684881 CACCAGCAAAGGTATCATGGAC 59.315 50.000 0.00 0.00 40.77 4.02
6590 6733 2.308570 ACACCAGCAAAGGTATCATGGA 59.691 45.455 0.00 0.00 40.77 3.41
6592 6735 3.119388 CCAACACCAGCAAAGGTATCATG 60.119 47.826 0.00 0.00 40.77 3.07
6593 6736 3.091545 CCAACACCAGCAAAGGTATCAT 58.908 45.455 0.00 0.00 40.77 2.45
6594 6737 2.158534 ACCAACACCAGCAAAGGTATCA 60.159 45.455 0.00 0.00 40.77 2.15
6621 6772 3.128349 CCAACAGCCGTATACCATACAC 58.872 50.000 0.00 0.00 0.00 2.90
6627 6778 3.573110 AGAGATACCAACAGCCGTATACC 59.427 47.826 0.00 0.00 0.00 2.73
6631 6782 2.453521 ACAGAGATACCAACAGCCGTA 58.546 47.619 0.00 0.00 0.00 4.02
6632 6783 1.267121 ACAGAGATACCAACAGCCGT 58.733 50.000 0.00 0.00 0.00 5.68
6633 6784 2.271800 GAACAGAGATACCAACAGCCG 58.728 52.381 0.00 0.00 0.00 5.52
6634 6785 2.237392 AGGAACAGAGATACCAACAGCC 59.763 50.000 0.00 0.00 0.00 4.85
6635 6786 3.618690 AGGAACAGAGATACCAACAGC 57.381 47.619 0.00 0.00 0.00 4.40
6636 6787 4.899502 ACAAGGAACAGAGATACCAACAG 58.100 43.478 0.00 0.00 0.00 3.16
6637 6788 4.974645 ACAAGGAACAGAGATACCAACA 57.025 40.909 0.00 0.00 0.00 3.33
6638 6789 4.870991 GCTACAAGGAACAGAGATACCAAC 59.129 45.833 0.00 0.00 0.00 3.77
6639 6790 4.530553 TGCTACAAGGAACAGAGATACCAA 59.469 41.667 0.00 0.00 0.00 3.67
6640 6791 4.093743 TGCTACAAGGAACAGAGATACCA 58.906 43.478 0.00 0.00 0.00 3.25
6641 6792 4.737855 TGCTACAAGGAACAGAGATACC 57.262 45.455 0.00 0.00 0.00 2.73
6642 6793 5.907207 TCATGCTACAAGGAACAGAGATAC 58.093 41.667 0.00 0.00 0.00 2.24
6643 6794 6.737720 ATCATGCTACAAGGAACAGAGATA 57.262 37.500 0.00 0.00 0.00 1.98
6644 6795 5.627182 ATCATGCTACAAGGAACAGAGAT 57.373 39.130 0.00 0.00 0.00 2.75
6645 6796 5.046376 TGAATCATGCTACAAGGAACAGAGA 60.046 40.000 0.00 0.00 0.00 3.10
6646 6797 5.181009 TGAATCATGCTACAAGGAACAGAG 58.819 41.667 0.00 0.00 0.00 3.35
6647 6798 5.164620 TGAATCATGCTACAAGGAACAGA 57.835 39.130 0.00 0.00 0.00 3.41
6648 6799 4.940046 ACTGAATCATGCTACAAGGAACAG 59.060 41.667 0.00 0.00 0.00 3.16
6649 6800 4.910195 ACTGAATCATGCTACAAGGAACA 58.090 39.130 0.00 0.00 0.00 3.18
6650 6801 5.181748 AGACTGAATCATGCTACAAGGAAC 58.818 41.667 0.00 0.00 0.00 3.62
6651 6802 5.046376 TGAGACTGAATCATGCTACAAGGAA 60.046 40.000 0.00 0.00 0.00 3.36
6711 6862 1.334689 GCCTCGTCGTTTTTCCCTTTG 60.335 52.381 0.00 0.00 0.00 2.77
6712 6863 0.949397 GCCTCGTCGTTTTTCCCTTT 59.051 50.000 0.00 0.00 0.00 3.11
6713 6864 1.226030 CGCCTCGTCGTTTTTCCCTT 61.226 55.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.