Multiple sequence alignment - TraesCS4D01G249400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G249400 chr4D 100.000 3283 0 0 1 3283 418569899 418566617 0.000000e+00 6063.0
1 TraesCS4D01G249400 chr4D 87.821 312 30 6 1324 1631 419461425 419461732 3.110000e-95 359.0
2 TraesCS4D01G249400 chr4D 88.136 295 27 6 1324 1614 418398318 418398028 8.720000e-91 344.0
3 TraesCS4D01G249400 chr4D 80.969 289 42 9 2006 2283 418397668 418397382 1.980000e-52 217.0
4 TraesCS4D01G249400 chr4D 84.259 216 32 2 2005 2219 419462085 419462299 3.320000e-50 209.0
5 TraesCS4D01G249400 chr4D 89.691 97 9 1 1881 1976 450320021 450320117 4.450000e-24 122.0
6 TraesCS4D01G249400 chr4B 91.108 821 38 11 2346 3158 515051424 515050631 0.000000e+00 1079.0
7 TraesCS4D01G249400 chr4B 92.110 621 28 6 1 614 515053190 515052584 0.000000e+00 856.0
8 TraesCS4D01G249400 chr4B 94.051 353 13 5 1267 1615 515052001 515051653 2.240000e-146 529.0
9 TraesCS4D01G249400 chr4B 87.622 307 32 4 1324 1627 517622711 517623014 5.210000e-93 351.0
10 TraesCS4D01G249400 chr4B 91.903 247 17 2 1368 1614 514747896 514747653 3.140000e-90 342.0
11 TraesCS4D01G249400 chr4B 94.030 201 5 2 2148 2341 515051657 515051457 6.890000e-77 298.0
12 TraesCS4D01G249400 chr4B 85.446 213 27 4 2006 2216 514747293 514747083 5.520000e-53 219.0
13 TraesCS4D01G249400 chr4B 93.750 96 6 0 3170 3265 515050039 515049944 9.490000e-31 145.0
14 TraesCS4D01G249400 chr4B 95.745 47 2 0 3237 3283 515048795 515048749 3.510000e-10 76.8
15 TraesCS4D01G249400 chr4A 86.674 953 49 38 1973 2879 46283732 46284652 0.000000e+00 985.0
16 TraesCS4D01G249400 chr4A 92.969 512 19 7 1 505 46282179 46282680 0.000000e+00 730.0
17 TraesCS4D01G249400 chr4A 85.641 585 49 17 1270 1839 46283153 46283717 1.700000e-162 582.0
18 TraesCS4D01G249400 chr4A 88.217 314 29 6 1324 1633 45105468 45105159 5.180000e-98 368.0
19 TraesCS4D01G249400 chr4A 87.500 312 31 6 1324 1631 46423547 46423854 1.450000e-93 353.0
20 TraesCS4D01G249400 chr4A 81.849 292 42 7 2002 2283 46424202 46424492 5.480000e-58 235.0
21 TraesCS4D01G249400 chr4A 83.410 217 34 2 2005 2220 45104814 45104599 2.000000e-47 200.0
22 TraesCS4D01G249400 chrUn 91.903 247 17 2 1368 1614 393375236 393374993 3.140000e-90 342.0
23 TraesCS4D01G249400 chrUn 85.446 213 27 4 2006 2216 393374633 393374423 5.520000e-53 219.0
24 TraesCS4D01G249400 chr1D 82.432 222 31 5 2003 2220 411128481 411128264 1.560000e-43 187.0
25 TraesCS4D01G249400 chr1B 95.294 85 4 0 1893 1977 631961306 631961222 5.710000e-28 135.0
26 TraesCS4D01G249400 chr7D 93.258 89 6 0 1893 1981 426777033 426776945 7.390000e-27 132.0
27 TraesCS4D01G249400 chr6B 92.473 93 6 1 1893 1984 116281189 116281097 7.390000e-27 132.0
28 TraesCS4D01G249400 chr2D 94.186 86 5 0 1893 1978 96798772 96798687 7.390000e-27 132.0
29 TraesCS4D01G249400 chr6D 94.118 85 5 0 1893 1977 255011995 255012079 2.660000e-26 130.0
30 TraesCS4D01G249400 chr5B 94.118 85 5 0 1893 1977 386542038 386541954 2.660000e-26 130.0
31 TraesCS4D01G249400 chr3D 92.391 92 6 1 1893 1984 527767455 527767365 2.660000e-26 130.0
32 TraesCS4D01G249400 chr7B 91.304 92 7 1 1893 1984 153939432 153939342 1.240000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G249400 chr4D 418566617 418569899 3282 True 6063.000000 6063 100.000000 1 3283 1 chr4D.!!$R1 3282
1 TraesCS4D01G249400 chr4D 419461425 419462299 874 False 284.000000 359 86.040000 1324 2219 2 chr4D.!!$F2 895
2 TraesCS4D01G249400 chr4D 418397382 418398318 936 True 280.500000 344 84.552500 1324 2283 2 chr4D.!!$R2 959
3 TraesCS4D01G249400 chr4B 515048749 515053190 4441 True 497.300000 1079 93.465667 1 3283 6 chr4B.!!$R2 3282
4 TraesCS4D01G249400 chr4B 514747083 514747896 813 True 280.500000 342 88.674500 1368 2216 2 chr4B.!!$R1 848
5 TraesCS4D01G249400 chr4A 46282179 46284652 2473 False 765.666667 985 88.428000 1 2879 3 chr4A.!!$F1 2878
6 TraesCS4D01G249400 chr4A 46423547 46424492 945 False 294.000000 353 84.674500 1324 2283 2 chr4A.!!$F2 959
7 TraesCS4D01G249400 chr4A 45104599 45105468 869 True 284.000000 368 85.813500 1324 2220 2 chr4A.!!$R1 896
8 TraesCS4D01G249400 chrUn 393374423 393375236 813 True 280.500000 342 88.674500 1368 2216 2 chrUn.!!$R1 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 509 0.387622 CGGTGGCAGCAAGATTTGTG 60.388 55.0 17.8 0.0 0.0 3.33 F
1639 1725 0.174617 CTTCTTGCTCTCCTCCGTCC 59.825 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1777 0.111061 TGGCCAGATGCAACAGAGTT 59.889 50.0 0.0 0.0 43.89 3.01 R
3071 3303 0.464036 AAACTCGCCTGACTGACACA 59.536 50.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 269 2.090503 GCTAGTTTTGCGGCAAAATTCG 59.909 45.455 35.00 28.20 43.66 3.34
399 406 4.815269 AGTAGACTGTCTCTTTCATGTGC 58.185 43.478 14.62 0.00 0.00 4.57
414 421 2.078849 TGTGCATCTACAGTCGTTGG 57.921 50.000 0.00 0.00 0.00 3.77
439 446 7.147828 GGCTATCAGCATATTATGTACTCTCCA 60.148 40.741 5.60 0.00 44.75 3.86
472 479 7.227156 CCTACACCATCTTATTTCTATTGGCT 58.773 38.462 0.00 0.00 0.00 4.75
501 509 0.387622 CGGTGGCAGCAAGATTTGTG 60.388 55.000 17.80 0.00 0.00 3.33
514 522 4.644103 AGATTTGTGTGCAATCCTATGC 57.356 40.909 0.00 0.00 46.58 3.14
515 523 3.382546 AGATTTGTGTGCAATCCTATGCC 59.617 43.478 0.00 0.00 45.83 4.40
519 527 0.747644 TGTGCAATCCTATGCCGGTG 60.748 55.000 1.90 0.00 45.83 4.94
523 531 1.475034 GCAATCCTATGCCGGTGAAGA 60.475 52.381 1.90 0.00 40.49 2.87
524 532 2.917933 CAATCCTATGCCGGTGAAGAA 58.082 47.619 1.90 0.00 0.00 2.52
559 567 3.134458 CCTATCGATGGCCTTTGAAGTC 58.866 50.000 12.39 0.00 0.00 3.01
560 568 3.181461 CCTATCGATGGCCTTTGAAGTCT 60.181 47.826 12.39 0.00 0.00 3.24
561 569 2.099141 TCGATGGCCTTTGAAGTCTG 57.901 50.000 3.32 0.00 0.00 3.51
563 571 1.611673 CGATGGCCTTTGAAGTCTGGT 60.612 52.381 3.32 0.00 0.00 4.00
565 573 1.140312 TGGCCTTTGAAGTCTGGTCT 58.860 50.000 3.32 0.00 0.00 3.85
567 575 2.038557 TGGCCTTTGAAGTCTGGTCTAC 59.961 50.000 3.32 0.00 0.00 2.59
569 577 3.514309 GGCCTTTGAAGTCTGGTCTACTA 59.486 47.826 0.00 0.00 0.00 1.82
570 578 4.162509 GGCCTTTGAAGTCTGGTCTACTAT 59.837 45.833 0.00 0.00 0.00 2.12
571 579 5.353111 GCCTTTGAAGTCTGGTCTACTATC 58.647 45.833 0.00 0.00 0.00 2.08
573 581 6.351456 GCCTTTGAAGTCTGGTCTACTATCTT 60.351 42.308 0.00 0.00 0.00 2.40
577 585 5.888724 TGAAGTCTGGTCTACTATCTTCCTG 59.111 44.000 0.00 0.00 31.90 3.86
587 595 4.162040 ACTATCTTCCTGAATGGGCAAG 57.838 45.455 0.00 0.00 36.20 4.01
598 606 1.958288 ATGGGCAAGGAGACAGTAGT 58.042 50.000 0.00 0.00 0.00 2.73
599 607 0.976641 TGGGCAAGGAGACAGTAGTG 59.023 55.000 0.00 0.00 0.00 2.74
622 630 5.988092 GCTGATTGCAAATGATCTACTCTC 58.012 41.667 1.71 0.00 42.31 3.20
623 631 5.759273 GCTGATTGCAAATGATCTACTCTCT 59.241 40.000 1.71 0.00 42.31 3.10
624 632 6.927936 GCTGATTGCAAATGATCTACTCTCTA 59.072 38.462 1.71 0.00 42.31 2.43
625 633 7.603404 GCTGATTGCAAATGATCTACTCTCTAT 59.397 37.037 1.71 0.00 42.31 1.98
626 634 9.142515 CTGATTGCAAATGATCTACTCTCTATC 57.857 37.037 1.71 0.00 0.00 2.08
627 635 8.868103 TGATTGCAAATGATCTACTCTCTATCT 58.132 33.333 1.71 0.00 0.00 1.98
628 636 9.357652 GATTGCAAATGATCTACTCTCTATCTC 57.642 37.037 1.71 0.00 0.00 2.75
629 637 8.476064 TTGCAAATGATCTACTCTCTATCTCT 57.524 34.615 0.00 0.00 0.00 3.10
630 638 8.109705 TGCAAATGATCTACTCTCTATCTCTC 57.890 38.462 0.00 0.00 0.00 3.20
631 639 7.944000 TGCAAATGATCTACTCTCTATCTCTCT 59.056 37.037 0.00 0.00 0.00 3.10
632 640 8.796475 GCAAATGATCTACTCTCTATCTCTCTT 58.204 37.037 0.00 0.00 0.00 2.85
640 648 8.528643 TCTACTCTCTATCTCTCTTAAGATCCG 58.471 40.741 5.44 0.00 37.24 4.18
641 649 7.311092 ACTCTCTATCTCTCTTAAGATCCGA 57.689 40.000 5.44 3.52 37.24 4.55
642 650 7.386851 ACTCTCTATCTCTCTTAAGATCCGAG 58.613 42.308 5.44 9.50 37.24 4.63
643 651 7.234782 ACTCTCTATCTCTCTTAAGATCCGAGA 59.765 40.741 19.55 19.55 38.63 4.04
648 656 4.403585 TCTCTTAAGATCCGAGAGACGA 57.596 45.455 5.44 0.00 45.77 4.20
649 657 4.767478 TCTCTTAAGATCCGAGAGACGAA 58.233 43.478 5.44 0.00 45.77 3.85
650 658 5.183969 TCTCTTAAGATCCGAGAGACGAAA 58.816 41.667 5.44 0.00 45.77 3.46
651 659 5.646793 TCTCTTAAGATCCGAGAGACGAAAA 59.353 40.000 5.44 0.00 45.77 2.29
652 660 6.319152 TCTCTTAAGATCCGAGAGACGAAAAT 59.681 38.462 5.44 0.00 45.77 1.82
653 661 7.498239 TCTCTTAAGATCCGAGAGACGAAAATA 59.502 37.037 5.44 0.00 45.77 1.40
654 662 7.640852 TCTTAAGATCCGAGAGACGAAAATAG 58.359 38.462 0.00 0.00 45.77 1.73
655 663 7.498239 TCTTAAGATCCGAGAGACGAAAATAGA 59.502 37.037 0.00 0.00 45.77 1.98
656 664 5.682943 AGATCCGAGAGACGAAAATAGAG 57.317 43.478 0.00 0.00 45.77 2.43
657 665 3.694535 TCCGAGAGACGAAAATAGAGC 57.305 47.619 0.00 0.00 45.77 4.09
658 666 3.014623 TCCGAGAGACGAAAATAGAGCA 58.985 45.455 0.00 0.00 45.77 4.26
691 699 9.952188 GAGATTGCTAAGTTTAGTTTCAGTTTT 57.048 29.630 1.28 0.00 33.32 2.43
706 714 9.150348 AGTTTCAGTTTTAAATCTGTTGGTTTG 57.850 29.630 20.47 0.60 33.89 2.93
742 750 3.153024 GCCATGCGACTTCCTGTAA 57.847 52.632 0.00 0.00 0.00 2.41
757 765 7.624549 ACTTCCTGTAATGCGGATGATTATAT 58.375 34.615 0.00 0.00 0.00 0.86
758 766 7.550551 ACTTCCTGTAATGCGGATGATTATATG 59.449 37.037 0.00 0.00 0.00 1.78
803 816 1.138069 GGGGTTGAAAGGTGTTTGGTG 59.862 52.381 0.00 0.00 0.00 4.17
831 844 5.361857 CCTCTGATGTTTGATTATGCCCTTT 59.638 40.000 0.00 0.00 0.00 3.11
832 845 6.127253 CCTCTGATGTTTGATTATGCCCTTTT 60.127 38.462 0.00 0.00 0.00 2.27
866 879 6.712547 GGCAGTTAATTAGGAGCTCACAATAT 59.287 38.462 17.19 7.49 0.00 1.28
892 905 3.314331 CCCACCACTGGAGCTCGT 61.314 66.667 7.83 0.00 40.55 4.18
926 939 1.545706 AAGGGCTGGAGACGTTCCTC 61.546 60.000 14.95 6.96 46.92 3.71
936 949 0.606604 GACGTTCCTCAAGTAGCCCA 59.393 55.000 0.00 0.00 0.00 5.36
938 951 1.270678 ACGTTCCTCAAGTAGCCCAAC 60.271 52.381 0.00 0.00 0.00 3.77
939 952 1.270625 CGTTCCTCAAGTAGCCCAACA 60.271 52.381 0.00 0.00 0.00 3.33
941 954 2.814336 GTTCCTCAAGTAGCCCAACAAG 59.186 50.000 0.00 0.00 0.00 3.16
942 955 1.168714 CCTCAAGTAGCCCAACAAGC 58.831 55.000 0.00 0.00 0.00 4.01
943 956 1.545428 CCTCAAGTAGCCCAACAAGCA 60.545 52.381 0.00 0.00 0.00 3.91
944 957 2.229792 CTCAAGTAGCCCAACAAGCAA 58.770 47.619 0.00 0.00 0.00 3.91
945 958 2.622942 CTCAAGTAGCCCAACAAGCAAA 59.377 45.455 0.00 0.00 0.00 3.68
946 959 3.027412 TCAAGTAGCCCAACAAGCAAAA 58.973 40.909 0.00 0.00 0.00 2.44
947 960 3.068024 TCAAGTAGCCCAACAAGCAAAAG 59.932 43.478 0.00 0.00 0.00 2.27
948 961 2.944129 AGTAGCCCAACAAGCAAAAGA 58.056 42.857 0.00 0.00 0.00 2.52
949 962 3.500343 AGTAGCCCAACAAGCAAAAGAT 58.500 40.909 0.00 0.00 0.00 2.40
950 963 3.897505 AGTAGCCCAACAAGCAAAAGATT 59.102 39.130 0.00 0.00 0.00 2.40
975 990 1.828331 GCCGTCTTTCCACACGTGAC 61.828 60.000 25.01 6.90 34.06 3.67
995 1010 4.081420 TGACTAAAGCAGGAGGAATCTGTC 60.081 45.833 0.00 0.00 34.89 3.51
1001 1016 4.036518 AGCAGGAGGAATCTGTCTGTTAT 58.963 43.478 0.00 0.00 34.89 1.89
1002 1017 4.125703 GCAGGAGGAATCTGTCTGTTATG 58.874 47.826 0.00 0.00 34.89 1.90
1016 1044 5.347635 TGTCTGTTATGTCGTTGCTTATGAC 59.652 40.000 5.21 5.21 42.15 3.06
1018 1046 5.805486 TCTGTTATGTCGTTGCTTATGACTC 59.195 40.000 11.36 3.43 42.27 3.36
1030 1058 4.125703 GCTTATGACTCCTTCACATCTGG 58.874 47.826 0.00 0.00 36.92 3.86
1062 1092 1.306568 AGGCAAGGAGGAGGAGGAC 60.307 63.158 0.00 0.00 0.00 3.85
1073 1109 2.041891 AGGAGGAGGACGAAGAAGAAGA 59.958 50.000 0.00 0.00 0.00 2.87
1089 1125 4.022413 AGAAGAAGAGGGTTTTGCTACC 57.978 45.455 0.00 0.00 37.47 3.18
1103 1145 2.392662 TGCTACCATGGAAGAGGAGAG 58.607 52.381 21.47 3.33 0.00 3.20
1143 1185 4.058124 TGTCAGGTTTCGAGTTCTTCATG 58.942 43.478 0.00 0.00 0.00 3.07
1179 1221 3.396260 TCCTTGAAGAAACTGGTACGG 57.604 47.619 0.00 0.00 42.99 4.02
1182 1228 4.041198 TCCTTGAAGAAACTGGTACGGATT 59.959 41.667 0.00 0.00 38.67 3.01
1184 1230 5.935789 CCTTGAAGAAACTGGTACGGATTTA 59.064 40.000 0.00 0.00 38.67 1.40
1185 1231 6.128363 CCTTGAAGAAACTGGTACGGATTTAC 60.128 42.308 0.00 0.00 38.67 2.01
1186 1232 5.856156 TGAAGAAACTGGTACGGATTTACA 58.144 37.500 0.00 0.00 38.67 2.41
1187 1233 6.469410 TGAAGAAACTGGTACGGATTTACAT 58.531 36.000 0.00 0.00 38.67 2.29
1188 1234 7.613585 TGAAGAAACTGGTACGGATTTACATA 58.386 34.615 0.00 0.00 38.67 2.29
1189 1235 7.546667 TGAAGAAACTGGTACGGATTTACATAC 59.453 37.037 0.00 0.00 38.67 2.39
1190 1236 6.938507 AGAAACTGGTACGGATTTACATACA 58.061 36.000 0.00 0.00 38.67 2.29
1191 1237 6.815142 AGAAACTGGTACGGATTTACATACAC 59.185 38.462 0.00 0.00 38.67 2.90
1192 1238 5.664294 ACTGGTACGGATTTACATACACA 57.336 39.130 0.00 0.00 38.67 3.72
1193 1239 5.413499 ACTGGTACGGATTTACATACACAC 58.587 41.667 0.00 0.00 38.67 3.82
1194 1240 4.757594 TGGTACGGATTTACATACACACC 58.242 43.478 0.00 0.00 0.00 4.16
1195 1241 4.122046 GGTACGGATTTACATACACACCC 58.878 47.826 0.00 0.00 0.00 4.61
1196 1242 4.141869 GGTACGGATTTACATACACACCCT 60.142 45.833 0.00 0.00 0.00 4.34
1197 1243 5.068987 GGTACGGATTTACATACACACCCTA 59.931 44.000 0.00 0.00 0.00 3.53
1198 1244 5.272283 ACGGATTTACATACACACCCTAG 57.728 43.478 0.00 0.00 0.00 3.02
1199 1245 4.713321 ACGGATTTACATACACACCCTAGT 59.287 41.667 0.00 0.00 0.00 2.57
1200 1246 5.163478 ACGGATTTACATACACACCCTAGTC 60.163 44.000 0.00 0.00 0.00 2.59
1201 1247 5.287226 GGATTTACATACACACCCTAGTCG 58.713 45.833 0.00 0.00 0.00 4.18
1202 1248 3.788333 TTACATACACACCCTAGTCGC 57.212 47.619 0.00 0.00 0.00 5.19
1203 1249 1.552578 ACATACACACCCTAGTCGCA 58.447 50.000 0.00 0.00 0.00 5.10
1204 1250 1.203994 ACATACACACCCTAGTCGCAC 59.796 52.381 0.00 0.00 0.00 5.34
1205 1251 1.203758 CATACACACCCTAGTCGCACA 59.796 52.381 0.00 0.00 0.00 4.57
1206 1252 1.330234 TACACACCCTAGTCGCACAA 58.670 50.000 0.00 0.00 0.00 3.33
1207 1253 0.685097 ACACACCCTAGTCGCACAAT 59.315 50.000 0.00 0.00 0.00 2.71
1208 1254 1.071699 ACACACCCTAGTCGCACAATT 59.928 47.619 0.00 0.00 0.00 2.32
1209 1255 2.300723 ACACACCCTAGTCGCACAATTA 59.699 45.455 0.00 0.00 0.00 1.40
1210 1256 3.055385 ACACACCCTAGTCGCACAATTAT 60.055 43.478 0.00 0.00 0.00 1.28
1211 1257 3.938963 CACACCCTAGTCGCACAATTATT 59.061 43.478 0.00 0.00 0.00 1.40
1212 1258 5.113383 CACACCCTAGTCGCACAATTATTA 58.887 41.667 0.00 0.00 0.00 0.98
1213 1259 5.234329 CACACCCTAGTCGCACAATTATTAG 59.766 44.000 0.00 0.00 0.00 1.73
1214 1260 5.128171 ACACCCTAGTCGCACAATTATTAGA 59.872 40.000 0.00 0.00 0.00 2.10
1215 1261 6.183360 ACACCCTAGTCGCACAATTATTAGAT 60.183 38.462 0.00 0.00 0.00 1.98
1216 1262 6.706270 CACCCTAGTCGCACAATTATTAGATT 59.294 38.462 0.00 0.00 0.00 2.40
1217 1263 7.226720 CACCCTAGTCGCACAATTATTAGATTT 59.773 37.037 0.00 0.00 0.00 2.17
1218 1264 8.426489 ACCCTAGTCGCACAATTATTAGATTTA 58.574 33.333 0.00 0.00 0.00 1.40
1219 1265 9.436957 CCCTAGTCGCACAATTATTAGATTTAT 57.563 33.333 0.00 0.00 0.00 1.40
1256 1302 1.305201 ACACCGTGATGTTTGGTCAC 58.695 50.000 5.28 0.00 41.91 3.67
1259 1305 1.140052 ACCGTGATGTTTGGTCACTGA 59.860 47.619 5.00 0.00 42.88 3.41
1260 1306 2.217750 CCGTGATGTTTGGTCACTGAA 58.782 47.619 4.94 0.00 42.88 3.02
1262 1308 2.032030 CGTGATGTTTGGTCACTGAACC 60.032 50.000 4.94 0.00 42.88 3.62
1264 1310 1.886542 GATGTTTGGTCACTGAACCCC 59.113 52.381 0.00 0.00 38.65 4.95
1287 1350 3.517602 GGTTTGGTTGGTTCAACACTTC 58.482 45.455 12.06 1.55 45.11 3.01
1288 1351 3.175929 GTTTGGTTGGTTCAACACTTCG 58.824 45.455 12.06 0.00 45.11 3.79
1289 1352 2.404923 TGGTTGGTTCAACACTTCGA 57.595 45.000 12.06 0.00 45.11 3.71
1294 1360 2.557317 TGGTTCAACACTTCGACTTCC 58.443 47.619 0.00 0.00 0.00 3.46
1305 1371 1.080093 CGACTTCCACCGCTGCTTA 60.080 57.895 0.00 0.00 0.00 3.09
1307 1373 1.079503 GACTTCCACCGCTGCTTAAG 58.920 55.000 0.00 0.00 0.00 1.85
1308 1374 0.321653 ACTTCCACCGCTGCTTAAGG 60.322 55.000 4.29 0.00 0.00 2.69
1309 1375 0.321653 CTTCCACCGCTGCTTAAGGT 60.322 55.000 4.29 0.00 39.12 3.50
1312 1378 2.750350 ACCGCTGCTTAAGGTGCT 59.250 55.556 4.29 0.00 36.81 4.40
1313 1379 1.376037 ACCGCTGCTTAAGGTGCTC 60.376 57.895 4.29 0.00 36.81 4.26
1314 1380 1.375908 CCGCTGCTTAAGGTGCTCA 60.376 57.895 4.29 0.00 0.00 4.26
1315 1381 0.745845 CCGCTGCTTAAGGTGCTCAT 60.746 55.000 4.29 0.00 0.00 2.90
1519 1588 2.737830 GGCTCGGCTACATCCTCC 59.262 66.667 0.00 0.00 0.00 4.30
1634 1715 0.800300 CGCGTCTTCTTGCTCTCCTC 60.800 60.000 0.00 0.00 0.00 3.71
1635 1716 0.459411 GCGTCTTCTTGCTCTCCTCC 60.459 60.000 0.00 0.00 0.00 4.30
1639 1725 0.174617 CTTCTTGCTCTCCTCCGTCC 59.825 60.000 0.00 0.00 0.00 4.79
1640 1726 1.258445 TTCTTGCTCTCCTCCGTCCC 61.258 60.000 0.00 0.00 0.00 4.46
1642 1728 4.779733 TGCTCTCCTCCGTCCCCC 62.780 72.222 0.00 0.00 0.00 5.40
1645 1731 4.437587 TCTCCTCCGTCCCCCGTC 62.438 72.222 0.00 0.00 33.66 4.79
1646 1732 4.444081 CTCCTCCGTCCCCCGTCT 62.444 72.222 0.00 0.00 33.66 4.18
1647 1733 4.437587 TCCTCCGTCCCCCGTCTC 62.438 72.222 0.00 0.00 33.66 3.36
1652 1738 4.493747 CGTCCCCCGTCTCGCTTC 62.494 72.222 0.00 0.00 0.00 3.86
1656 1742 4.735132 CCCCGTCTCGCTTCGCAA 62.735 66.667 0.00 0.00 0.00 4.85
1657 1743 3.479269 CCCGTCTCGCTTCGCAAC 61.479 66.667 0.00 0.00 0.00 4.17
1658 1744 3.827784 CCGTCTCGCTTCGCAACG 61.828 66.667 6.34 6.34 35.51 4.10
1659 1745 2.799502 CGTCTCGCTTCGCAACGA 60.800 61.111 0.00 0.00 36.93 3.85
1661 1747 1.674611 CGTCTCGCTTCGCAACGATT 61.675 55.000 0.00 0.00 37.72 3.34
1662 1748 0.246912 GTCTCGCTTCGCAACGATTG 60.247 55.000 0.00 0.00 37.72 2.67
1665 1751 0.388778 TCGCTTCGCAACGATTGGTA 60.389 50.000 0.00 0.00 35.23 3.25
1671 1766 1.874231 TCGCAACGATTGGTAAGCAAA 59.126 42.857 0.00 0.00 32.00 3.68
1676 1771 5.373262 GCAACGATTGGTAAGCAAAAATTG 58.627 37.500 0.00 0.00 32.00 2.32
1681 1776 6.863126 ACGATTGGTAAGCAAAAATTGAAGAG 59.137 34.615 0.00 0.00 0.00 2.85
1682 1777 7.083858 CGATTGGTAAGCAAAAATTGAAGAGA 58.916 34.615 0.00 0.00 0.00 3.10
1683 1778 7.594758 CGATTGGTAAGCAAAAATTGAAGAGAA 59.405 33.333 0.00 0.00 0.00 2.87
1684 1779 8.593492 ATTGGTAAGCAAAAATTGAAGAGAAC 57.407 30.769 0.00 0.00 0.00 3.01
1686 1781 7.425606 TGGTAAGCAAAAATTGAAGAGAACTC 58.574 34.615 0.00 0.00 0.00 3.01
1688 1783 7.592903 GGTAAGCAAAAATTGAAGAGAACTCTG 59.407 37.037 5.06 0.00 40.36 3.35
1695 1791 5.876612 ATTGAAGAGAACTCTGTTGCATC 57.123 39.130 5.06 0.00 40.36 3.91
1729 1888 4.824166 GCAGCAATGACGGCAGCG 62.824 66.667 0.00 0.00 34.12 5.18
1803 1962 4.711949 AGCGGCTGCCACTTCCTG 62.712 66.667 20.29 0.93 44.31 3.86
1841 2000 1.406898 TCTGGTGAGAGCTAGCATTCG 59.593 52.381 18.83 1.64 0.00 3.34
1842 2001 0.461548 TGGTGAGAGCTAGCATTCGG 59.538 55.000 18.83 0.00 0.00 4.30
1846 2005 0.599728 GAGAGCTAGCATTCGGGCTG 60.600 60.000 18.83 0.00 45.44 4.85
1849 2008 1.072159 GCTAGCATTCGGGCTGGAT 59.928 57.895 10.63 0.00 44.26 3.41
1857 2016 0.472471 TTCGGGCTGGATCATTACCC 59.528 55.000 0.00 0.00 37.19 3.69
1862 2021 1.583054 GCTGGATCATTACCCGTCAC 58.417 55.000 0.00 0.00 0.00 3.67
1865 2024 0.179094 GGATCATTACCCGTCACGCA 60.179 55.000 0.00 0.00 0.00 5.24
1867 2026 1.792949 GATCATTACCCGTCACGCATC 59.207 52.381 0.00 0.00 0.00 3.91
1872 2031 1.184431 TACCCGTCACGCATCCTTAA 58.816 50.000 0.00 0.00 0.00 1.85
1884 2043 5.466728 CACGCATCCTTAATTATGTGCTAGT 59.533 40.000 9.48 2.66 37.15 2.57
1886 2045 6.645415 ACGCATCCTTAATTATGTGCTAGTAC 59.355 38.462 3.70 3.70 37.15 2.73
1887 2046 6.868864 CGCATCCTTAATTATGTGCTAGTACT 59.131 38.462 12.42 0.00 0.00 2.73
1888 2047 7.385205 CGCATCCTTAATTATGTGCTAGTACTT 59.615 37.037 12.42 8.44 0.00 2.24
1889 2048 8.713271 GCATCCTTAATTATGTGCTAGTACTTC 58.287 37.037 12.42 0.00 0.00 3.01
1890 2049 9.209175 CATCCTTAATTATGTGCTAGTACTTCC 57.791 37.037 12.42 0.00 0.00 3.46
1891 2050 8.548880 TCCTTAATTATGTGCTAGTACTTCCT 57.451 34.615 12.42 0.00 0.00 3.36
1892 2051 8.639761 TCCTTAATTATGTGCTAGTACTTCCTC 58.360 37.037 12.42 0.00 0.00 3.71
1893 2052 8.643324 CCTTAATTATGTGCTAGTACTTCCTCT 58.357 37.037 12.42 0.00 0.00 3.69
1894 2053 9.685828 CTTAATTATGTGCTAGTACTTCCTCTC 57.314 37.037 12.42 0.00 0.00 3.20
1895 2054 6.658188 ATTATGTGCTAGTACTTCCTCTCC 57.342 41.667 12.42 0.00 0.00 3.71
1896 2055 2.736347 TGTGCTAGTACTTCCTCTCCC 58.264 52.381 12.42 0.00 0.00 4.30
1897 2056 2.312140 TGTGCTAGTACTTCCTCTCCCT 59.688 50.000 12.42 0.00 0.00 4.20
1899 2058 2.091775 TGCTAGTACTTCCTCTCCCTCC 60.092 54.545 0.00 0.00 0.00 4.30
1900 2059 2.853705 CTAGTACTTCCTCTCCCTCCG 58.146 57.143 0.00 0.00 0.00 4.63
1901 2060 1.001282 AGTACTTCCTCTCCCTCCGT 58.999 55.000 0.00 0.00 0.00 4.69
1903 2062 1.750206 GTACTTCCTCTCCCTCCGTTC 59.250 57.143 0.00 0.00 0.00 3.95
1904 2063 0.615261 ACTTCCTCTCCCTCCGTTCC 60.615 60.000 0.00 0.00 0.00 3.62
1905 2064 0.614979 CTTCCTCTCCCTCCGTTCCA 60.615 60.000 0.00 0.00 0.00 3.53
1906 2065 0.178915 TTCCTCTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
1907 2066 0.178915 TCCTCTCCCTCCGTTCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1908 2067 0.912486 CCTCTCCCTCCGTTCCAAAT 59.088 55.000 0.00 0.00 0.00 2.32
1909 2068 1.282157 CCTCTCCCTCCGTTCCAAATT 59.718 52.381 0.00 0.00 0.00 1.82
1911 2070 3.532542 CTCTCCCTCCGTTCCAAATTAC 58.467 50.000 0.00 0.00 0.00 1.89
1912 2071 3.178865 TCTCCCTCCGTTCCAAATTACT 58.821 45.455 0.00 0.00 0.00 2.24
1914 2073 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1916 2075 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1917 2076 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
1918 2077 4.181578 CTCCGTTCCAAATTACTCGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1919 2078 3.930229 TCCGTTCCAAATTACTCGTCATG 59.070 43.478 0.00 0.00 0.00 3.07
1920 2079 3.063452 CCGTTCCAAATTACTCGTCATGG 59.937 47.826 0.00 0.00 0.00 3.66
1921 2080 3.682858 CGTTCCAAATTACTCGTCATGGT 59.317 43.478 0.00 0.00 0.00 3.55
1922 2081 4.153475 CGTTCCAAATTACTCGTCATGGTT 59.847 41.667 0.00 0.00 0.00 3.67
1924 2083 6.443792 GTTCCAAATTACTCGTCATGGTTTT 58.556 36.000 0.00 0.00 0.00 2.43
1926 2085 7.136289 TCCAAATTACTCGTCATGGTTTTAC 57.864 36.000 0.00 0.00 0.00 2.01
1927 2086 6.938030 TCCAAATTACTCGTCATGGTTTTACT 59.062 34.615 0.00 0.00 0.00 2.24
1929 2088 7.749126 CCAAATTACTCGTCATGGTTTTACTTC 59.251 37.037 0.00 0.00 0.00 3.01
1930 2089 7.972832 AATTACTCGTCATGGTTTTACTTCA 57.027 32.000 0.00 0.00 0.00 3.02
1931 2090 7.972832 ATTACTCGTCATGGTTTTACTTCAA 57.027 32.000 0.00 0.00 0.00 2.69
1934 2093 7.272037 ACTCGTCATGGTTTTACTTCAAATT 57.728 32.000 0.00 0.00 0.00 1.82
1936 2095 8.842280 ACTCGTCATGGTTTTACTTCAAATTTA 58.158 29.630 0.00 0.00 0.00 1.40
1937 2096 9.672086 CTCGTCATGGTTTTACTTCAAATTTAA 57.328 29.630 0.00 0.00 0.00 1.52
1952 2111 7.895582 TCAAATTTAAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
1953 2112 7.692088 TCAAATTTAAACTAAAACCACGACGA 58.308 30.769 0.00 0.00 0.00 4.20
1954 2113 8.180267 TCAAATTTAAACTAAAACCACGACGAA 58.820 29.630 0.00 0.00 0.00 3.85
1961 2120 8.496872 AAACTAAAACCACGACGAATAATTTG 57.503 30.769 0.00 0.00 0.00 2.32
1962 2121 7.424227 ACTAAAACCACGACGAATAATTTGA 57.576 32.000 0.00 0.00 0.00 2.69
1963 2122 7.863666 ACTAAAACCACGACGAATAATTTGAA 58.136 30.769 0.00 0.00 0.00 2.69
1964 2123 8.344098 ACTAAAACCACGACGAATAATTTGAAA 58.656 29.630 0.00 0.00 0.00 2.69
1967 2126 4.448395 ACCACGACGAATAATTTGAAACGA 59.552 37.500 0.00 0.00 0.00 3.85
1968 2127 5.050227 ACCACGACGAATAATTTGAAACGAA 60.050 36.000 0.00 0.00 0.00 3.85
1972 2131 5.163933 CGACGAATAATTTGAAACGAAGGGA 60.164 40.000 0.00 0.00 0.00 4.20
1991 2150 2.612672 GGAGTAGCAACTAATTTCGGGC 59.387 50.000 0.00 0.00 35.56 6.13
1992 2151 2.612672 GAGTAGCAACTAATTTCGGGCC 59.387 50.000 0.00 0.00 35.56 5.80
2290 2462 1.532604 TTCGTGGACTGATCGGTGCT 61.533 55.000 24.50 0.00 0.00 4.40
2300 2472 1.766143 GATCGGTGCTGGCGATCAAC 61.766 60.000 1.22 0.00 38.56 3.18
2319 2492 1.131883 ACTGTATCAGCCGTACGTGTC 59.868 52.381 15.21 2.93 34.37 3.67
2341 2514 2.124612 TGCTCATCACCGGCATGG 60.125 61.111 12.86 6.24 46.41 3.66
2342 2515 3.589881 GCTCATCACCGGCATGGC 61.590 66.667 9.69 9.69 43.94 4.40
2343 2516 2.124612 CTCATCACCGGCATGGCA 60.125 61.111 20.37 0.00 43.94 4.92
2344 2517 2.438254 TCATCACCGGCATGGCAC 60.438 61.111 20.37 0.00 43.94 5.01
2444 2656 7.038154 AGCAGCAGAGTAACTAGAGAATAAG 57.962 40.000 0.00 0.00 0.00 1.73
2481 2699 1.335872 CCCCTCGTGTGCAAAAATGAC 60.336 52.381 0.00 0.00 0.00 3.06
2494 2712 3.471495 AAAATGACGAGATTGTTCGCC 57.529 42.857 0.00 0.00 44.15 5.54
2505 2723 4.986622 AGATTGTTCGCCTAATTTCTTGC 58.013 39.130 0.00 0.00 0.00 4.01
2557 2775 8.076178 AGGATAAGAATTTCAGTTTCACGTTTG 58.924 33.333 0.00 0.00 0.00 2.93
2744 2968 4.703379 ATCAGGAATCAGGATCCACTTC 57.297 45.455 15.82 12.73 39.55 3.01
2813 3041 2.413837 GCGCCACTTTCAGTAAAGAGA 58.586 47.619 0.00 0.00 44.14 3.10
2814 3042 2.806244 GCGCCACTTTCAGTAAAGAGAA 59.194 45.455 0.00 0.00 44.14 2.87
2815 3043 3.120511 GCGCCACTTTCAGTAAAGAGAAG 60.121 47.826 0.00 0.00 44.14 2.85
2816 3044 4.307432 CGCCACTTTCAGTAAAGAGAAGA 58.693 43.478 4.95 0.00 44.14 2.87
2817 3045 4.387256 CGCCACTTTCAGTAAAGAGAAGAG 59.613 45.833 4.95 0.00 44.14 2.85
2844 3076 3.905678 CGGCCAGCTCCTACCTCG 61.906 72.222 2.24 0.00 0.00 4.63
2872 3104 1.648504 CTCACGCTTGATCTGATGCA 58.351 50.000 0.00 0.00 0.00 3.96
2937 3169 1.316651 GGCTGCATGAATCCTTCTCC 58.683 55.000 0.50 0.00 0.00 3.71
2946 3178 5.184671 GCATGAATCCTTCTCCTTTTCTGTT 59.815 40.000 0.00 0.00 0.00 3.16
2975 3207 8.953313 GTTATTACTACCAAATTACCACTGCTT 58.047 33.333 0.00 0.00 0.00 3.91
2979 3211 6.717289 ACTACCAAATTACCACTGCTTGATA 58.283 36.000 0.00 0.00 0.00 2.15
2994 3226 3.797039 CTTGATACTTGAATCAGCGGGA 58.203 45.455 0.00 0.00 37.20 5.14
3000 3232 2.771943 ACTTGAATCAGCGGGAGGATTA 59.228 45.455 0.00 0.00 34.06 1.75
3001 3233 3.392616 ACTTGAATCAGCGGGAGGATTAT 59.607 43.478 0.00 0.00 34.06 1.28
3002 3234 4.141390 ACTTGAATCAGCGGGAGGATTATT 60.141 41.667 0.00 0.00 34.06 1.40
3062 3294 0.310543 CTGCAGCCGTAAAAACAGCA 59.689 50.000 0.00 0.00 0.00 4.41
3071 3303 4.142687 GCCGTAAAAACAGCACTATGACAT 60.143 41.667 0.00 0.00 0.00 3.06
3095 3327 0.391263 CAGTCAGGCGAGTTTACCCC 60.391 60.000 0.00 0.00 0.00 4.95
3096 3328 1.447314 GTCAGGCGAGTTTACCCCG 60.447 63.158 0.00 0.00 0.00 5.73
3103 3335 0.515564 CGAGTTTACCCCGCAACAAG 59.484 55.000 0.00 0.00 0.00 3.16
3104 3336 1.874739 CGAGTTTACCCCGCAACAAGA 60.875 52.381 0.00 0.00 0.00 3.02
3107 3339 2.621526 AGTTTACCCCGCAACAAGAAAG 59.378 45.455 0.00 0.00 0.00 2.62
3109 3341 1.886886 TACCCCGCAACAAGAAAGAC 58.113 50.000 0.00 0.00 0.00 3.01
3133 3365 6.183361 ACAGGTGTCAGTACTAAGGTGATTTT 60.183 38.462 0.00 0.00 0.00 1.82
3178 3989 3.489180 TTCGTCTTCTCCAACTCGATC 57.511 47.619 0.00 0.00 0.00 3.69
3179 3990 2.433436 TCGTCTTCTCCAACTCGATCA 58.567 47.619 0.00 0.00 0.00 2.92
3180 3991 2.161808 TCGTCTTCTCCAACTCGATCAC 59.838 50.000 0.00 0.00 0.00 3.06
3201 4012 6.172630 TCACACATATGTCACAATGCTAGTT 58.827 36.000 5.07 0.00 36.72 2.24
3233 4044 9.322773 CAACACTAGATGACATCACATTAAGAT 57.677 33.333 17.57 0.00 0.00 2.40
3267 5255 6.835488 AGATGCCAACACATAAAGAATACCAT 59.165 34.615 0.00 0.00 0.00 3.55
3269 5257 5.359576 TGCCAACACATAAAGAATACCATCC 59.640 40.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.754850 TGATTCAGTTGCAGGAATCTGTG 59.245 43.478 25.22 4.30 46.03 3.66
279 286 6.313519 ACAATTACTTCTGGCTAATGAGGA 57.686 37.500 0.00 0.00 0.00 3.71
369 376 8.594881 TGAAAGAGACAGTCTACTCATTTTTC 57.405 34.615 2.00 6.31 32.65 2.29
399 406 4.294232 CTGATAGCCAACGACTGTAGATG 58.706 47.826 0.00 0.00 0.00 2.90
414 421 7.776107 TGGAGAGTACATAATATGCTGATAGC 58.224 38.462 0.00 0.00 42.82 2.97
439 446 7.345914 AGAAATAAGATGGTGTAGGCTTAGACT 59.654 37.037 3.12 0.00 0.00 3.24
472 479 1.597854 CTGCCACCGAAAGTGCTCA 60.598 57.895 0.00 0.00 45.83 4.26
501 509 0.463654 TCACCGGCATAGGATTGCAC 60.464 55.000 0.00 0.00 44.59 4.57
514 522 4.932146 AGACAAATGTTTTTCTTCACCGG 58.068 39.130 0.00 0.00 0.00 5.28
515 523 6.496524 GAAGACAAATGTTTTTCTTCACCG 57.503 37.500 20.93 0.00 45.97 4.94
519 527 8.504005 TCGATAGGAAGACAAATGTTTTTCTTC 58.496 33.333 19.00 19.00 45.97 2.87
523 531 7.538575 CCATCGATAGGAAGACAAATGTTTTT 58.461 34.615 0.00 0.00 0.00 1.94
524 532 6.404734 GCCATCGATAGGAAGACAAATGTTTT 60.405 38.462 15.42 0.00 0.00 2.43
559 567 5.011533 CCCATTCAGGAAGATAGTAGACCAG 59.988 48.000 0.00 0.00 41.22 4.00
560 568 4.901849 CCCATTCAGGAAGATAGTAGACCA 59.098 45.833 0.00 0.00 41.22 4.02
561 569 4.262678 GCCCATTCAGGAAGATAGTAGACC 60.263 50.000 0.00 0.00 41.22 3.85
563 571 4.556697 TGCCCATTCAGGAAGATAGTAGA 58.443 43.478 0.00 0.00 41.22 2.59
565 573 4.103153 CCTTGCCCATTCAGGAAGATAGTA 59.897 45.833 0.00 0.00 41.22 1.82
567 575 3.137176 TCCTTGCCCATTCAGGAAGATAG 59.863 47.826 0.00 0.00 41.22 2.08
569 577 1.925255 TCCTTGCCCATTCAGGAAGAT 59.075 47.619 0.00 0.00 41.22 2.40
570 578 1.283029 CTCCTTGCCCATTCAGGAAGA 59.717 52.381 0.00 0.00 41.22 2.87
571 579 1.283029 TCTCCTTGCCCATTCAGGAAG 59.717 52.381 0.00 0.00 41.22 3.46
573 581 0.620556 GTCTCCTTGCCCATTCAGGA 59.379 55.000 0.00 0.00 41.22 3.86
577 585 2.237392 ACTACTGTCTCCTTGCCCATTC 59.763 50.000 0.00 0.00 0.00 2.67
599 607 5.759273 AGAGAGTAGATCATTTGCAATCAGC 59.241 40.000 0.00 0.00 45.96 4.26
606 614 8.340618 AGAGAGATAGAGAGTAGATCATTTGC 57.659 38.462 0.00 0.00 0.00 3.68
614 622 8.528643 CGGATCTTAAGAGAGATAGAGAGTAGA 58.471 40.741 11.53 0.00 36.54 2.59
615 623 8.528643 TCGGATCTTAAGAGAGATAGAGAGTAG 58.471 40.741 11.53 0.00 36.54 2.57
616 624 8.425237 TCGGATCTTAAGAGAGATAGAGAGTA 57.575 38.462 11.53 0.00 36.54 2.59
617 625 7.234782 TCTCGGATCTTAAGAGAGATAGAGAGT 59.765 40.741 15.42 0.00 40.79 3.24
618 626 7.611770 TCTCGGATCTTAAGAGAGATAGAGAG 58.388 42.308 15.42 12.08 40.79 3.20
619 627 7.547697 TCTCGGATCTTAAGAGAGATAGAGA 57.452 40.000 15.42 15.48 41.95 3.10
627 635 4.403585 TCGTCTCTCGGATCTTAAGAGA 57.596 45.455 11.53 14.32 42.39 3.10
628 636 5.487153 TTTCGTCTCTCGGATCTTAAGAG 57.513 43.478 11.53 11.15 40.32 2.85
629 637 5.892160 TTTTCGTCTCTCGGATCTTAAGA 57.108 39.130 7.82 7.82 40.32 2.10
630 638 7.640852 TCTATTTTCGTCTCTCGGATCTTAAG 58.359 38.462 0.00 0.00 40.32 1.85
631 639 7.563888 TCTATTTTCGTCTCTCGGATCTTAA 57.436 36.000 0.00 0.00 40.32 1.85
632 640 6.293516 GCTCTATTTTCGTCTCTCGGATCTTA 60.294 42.308 0.00 0.00 40.32 2.10
633 641 5.506649 GCTCTATTTTCGTCTCTCGGATCTT 60.507 44.000 0.00 0.00 40.32 2.40
634 642 4.023536 GCTCTATTTTCGTCTCTCGGATCT 60.024 45.833 0.00 0.00 40.32 2.75
635 643 4.223659 GCTCTATTTTCGTCTCTCGGATC 58.776 47.826 0.00 0.00 40.32 3.36
636 644 3.632604 TGCTCTATTTTCGTCTCTCGGAT 59.367 43.478 0.00 0.00 40.32 4.18
637 645 3.014623 TGCTCTATTTTCGTCTCTCGGA 58.985 45.455 0.00 0.00 40.32 4.55
638 646 3.367607 CTGCTCTATTTTCGTCTCTCGG 58.632 50.000 0.00 0.00 40.32 4.63
639 647 2.786578 GCTGCTCTATTTTCGTCTCTCG 59.213 50.000 0.00 0.00 41.41 4.04
640 648 3.549873 GTGCTGCTCTATTTTCGTCTCTC 59.450 47.826 0.00 0.00 0.00 3.20
641 649 3.056536 TGTGCTGCTCTATTTTCGTCTCT 60.057 43.478 0.00 0.00 0.00 3.10
642 650 3.254060 TGTGCTGCTCTATTTTCGTCTC 58.746 45.455 0.00 0.00 0.00 3.36
643 651 3.319137 TGTGCTGCTCTATTTTCGTCT 57.681 42.857 0.00 0.00 0.00 4.18
644 652 3.618594 TCATGTGCTGCTCTATTTTCGTC 59.381 43.478 0.00 0.00 0.00 4.20
645 653 3.599343 TCATGTGCTGCTCTATTTTCGT 58.401 40.909 0.00 0.00 0.00 3.85
646 654 3.867493 TCTCATGTGCTGCTCTATTTTCG 59.133 43.478 0.00 0.00 0.00 3.46
647 655 6.200100 CAATCTCATGTGCTGCTCTATTTTC 58.800 40.000 0.00 0.00 0.00 2.29
648 656 5.450137 GCAATCTCATGTGCTGCTCTATTTT 60.450 40.000 0.00 0.00 37.78 1.82
649 657 4.036498 GCAATCTCATGTGCTGCTCTATTT 59.964 41.667 0.00 0.00 37.78 1.40
650 658 3.564644 GCAATCTCATGTGCTGCTCTATT 59.435 43.478 0.00 0.00 37.78 1.73
651 659 3.139850 GCAATCTCATGTGCTGCTCTAT 58.860 45.455 0.00 0.00 37.78 1.98
652 660 2.558378 GCAATCTCATGTGCTGCTCTA 58.442 47.619 0.00 0.00 37.78 2.43
653 661 1.380524 GCAATCTCATGTGCTGCTCT 58.619 50.000 0.00 0.00 37.78 4.09
654 662 3.920144 GCAATCTCATGTGCTGCTC 57.080 52.632 0.00 0.00 37.78 4.26
681 689 8.931775 ACAAACCAACAGATTTAAAACTGAAAC 58.068 29.630 26.64 0.00 37.54 2.78
691 699 6.490721 ACCCGAATAACAAACCAACAGATTTA 59.509 34.615 0.00 0.00 0.00 1.40
730 738 1.860950 CATCCGCATTACAGGAAGTCG 59.139 52.381 0.00 0.00 40.32 4.18
735 743 7.181569 TCATATAATCATCCGCATTACAGGA 57.818 36.000 0.00 0.00 41.30 3.86
769 782 3.731431 TCAACCCCGCCATATATAGGAT 58.269 45.455 0.00 0.00 0.00 3.24
774 787 2.445525 ACCTTTCAACCCCGCCATATAT 59.554 45.455 0.00 0.00 0.00 0.86
782 795 0.387565 CCAAACACCTTTCAACCCCG 59.612 55.000 0.00 0.00 0.00 5.73
803 816 1.098050 AATCAAACATCAGAGGCGGC 58.902 50.000 0.00 0.00 0.00 6.53
842 855 7.736447 ATATTGTGAGCTCCTAATTAACTGC 57.264 36.000 12.15 0.00 0.00 4.40
866 879 1.344953 CCAGTGGTGGGCTGCCTATA 61.345 60.000 19.68 3.11 40.67 1.31
892 905 1.592400 CCCTTACGTGTCGAGCTCCA 61.592 60.000 8.47 0.00 0.00 3.86
926 939 3.068024 TCTTTTGCTTGTTGGGCTACTTG 59.932 43.478 0.00 0.00 0.00 3.16
936 949 3.627123 GGCACCAAAATCTTTTGCTTGTT 59.373 39.130 9.40 0.00 44.62 2.83
938 951 2.221517 CGGCACCAAAATCTTTTGCTTG 59.778 45.455 9.40 9.34 44.62 4.01
939 952 2.158971 ACGGCACCAAAATCTTTTGCTT 60.159 40.909 9.40 0.00 44.62 3.91
941 954 1.792367 GACGGCACCAAAATCTTTTGC 59.208 47.619 9.40 0.53 44.62 3.68
942 955 3.369546 AGACGGCACCAAAATCTTTTG 57.630 42.857 8.16 8.16 45.34 2.44
943 956 4.368315 GAAAGACGGCACCAAAATCTTTT 58.632 39.130 0.00 0.00 39.19 2.27
944 957 3.243737 GGAAAGACGGCACCAAAATCTTT 60.244 43.478 0.00 0.00 41.20 2.52
945 958 2.296190 GGAAAGACGGCACCAAAATCTT 59.704 45.455 0.00 0.00 0.00 2.40
946 959 1.886542 GGAAAGACGGCACCAAAATCT 59.113 47.619 0.00 0.00 0.00 2.40
947 960 1.611491 TGGAAAGACGGCACCAAAATC 59.389 47.619 0.00 0.00 0.00 2.17
948 961 1.339929 GTGGAAAGACGGCACCAAAAT 59.660 47.619 3.53 0.00 34.11 1.82
949 962 0.741915 GTGGAAAGACGGCACCAAAA 59.258 50.000 3.53 0.00 34.11 2.44
950 963 0.394488 TGTGGAAAGACGGCACCAAA 60.394 50.000 3.53 0.00 34.11 3.28
975 990 4.081198 ACAGACAGATTCCTCCTGCTTTAG 60.081 45.833 0.00 0.00 35.14 1.85
995 1010 5.005779 GGAGTCATAAGCAACGACATAACAG 59.994 44.000 0.00 0.00 31.92 3.16
1001 1016 3.006430 TGAAGGAGTCATAAGCAACGACA 59.994 43.478 0.00 0.00 31.92 4.35
1002 1017 3.368236 GTGAAGGAGTCATAAGCAACGAC 59.632 47.826 0.00 0.00 38.90 4.34
1016 1044 3.102972 TCTCTTCCCAGATGTGAAGGAG 58.897 50.000 5.41 0.00 38.76 3.69
1018 1046 2.170187 CCTCTCTTCCCAGATGTGAAGG 59.830 54.545 5.41 0.00 38.76 3.46
1030 1058 1.557269 TTGCCTCTGCCCTCTCTTCC 61.557 60.000 0.00 0.00 36.33 3.46
1062 1092 4.319839 GCAAAACCCTCTTCTTCTTCTTCG 60.320 45.833 0.00 0.00 0.00 3.79
1073 1109 2.378547 TCCATGGTAGCAAAACCCTCTT 59.621 45.455 12.58 0.00 38.90 2.85
1089 1125 0.693767 AGGCCCTCTCCTCTTCCATG 60.694 60.000 0.00 0.00 0.00 3.66
1121 1163 3.812156 TGAAGAACTCGAAACCTGACA 57.188 42.857 0.00 0.00 0.00 3.58
1143 1185 4.458397 TCAAGGAATTGGAGAGCATGATC 58.542 43.478 1.78 1.78 0.00 2.92
1179 1221 4.743644 GCGACTAGGGTGTGTATGTAAATC 59.256 45.833 0.00 0.00 0.00 2.17
1182 1228 3.090790 TGCGACTAGGGTGTGTATGTAA 58.909 45.455 0.00 0.00 0.00 2.41
1184 1230 1.203994 GTGCGACTAGGGTGTGTATGT 59.796 52.381 0.00 0.00 0.00 2.29
1185 1231 1.203758 TGTGCGACTAGGGTGTGTATG 59.796 52.381 0.00 0.00 0.00 2.39
1186 1232 1.552578 TGTGCGACTAGGGTGTGTAT 58.447 50.000 0.00 0.00 0.00 2.29
1187 1233 1.330234 TTGTGCGACTAGGGTGTGTA 58.670 50.000 0.00 0.00 0.00 2.90
1188 1234 0.685097 ATTGTGCGACTAGGGTGTGT 59.315 50.000 0.00 0.00 0.00 3.72
1189 1235 1.808411 AATTGTGCGACTAGGGTGTG 58.192 50.000 0.00 0.00 0.00 3.82
1190 1236 3.906720 ATAATTGTGCGACTAGGGTGT 57.093 42.857 0.00 0.00 0.00 4.16
1191 1237 5.597806 TCTAATAATTGTGCGACTAGGGTG 58.402 41.667 0.00 0.00 0.00 4.61
1192 1238 5.864418 TCTAATAATTGTGCGACTAGGGT 57.136 39.130 0.00 0.00 0.00 4.34
1193 1239 7.730364 AAATCTAATAATTGTGCGACTAGGG 57.270 36.000 0.00 0.00 0.00 3.53
1210 1256 9.299465 AGAACCCCAAAACGTAAATAAATCTAA 57.701 29.630 0.00 0.00 0.00 2.10
1211 1257 8.866970 AGAACCCCAAAACGTAAATAAATCTA 57.133 30.769 0.00 0.00 0.00 1.98
1212 1258 7.770366 AGAACCCCAAAACGTAAATAAATCT 57.230 32.000 0.00 0.00 0.00 2.40
1213 1259 8.513774 TGTAGAACCCCAAAACGTAAATAAATC 58.486 33.333 0.00 0.00 0.00 2.17
1214 1260 8.298854 GTGTAGAACCCCAAAACGTAAATAAAT 58.701 33.333 0.00 0.00 0.00 1.40
1215 1261 7.255416 GGTGTAGAACCCCAAAACGTAAATAAA 60.255 37.037 0.00 0.00 44.02 1.40
1216 1262 6.206438 GGTGTAGAACCCCAAAACGTAAATAA 59.794 38.462 0.00 0.00 44.02 1.40
1217 1263 5.704978 GGTGTAGAACCCCAAAACGTAAATA 59.295 40.000 0.00 0.00 44.02 1.40
1218 1264 4.520111 GGTGTAGAACCCCAAAACGTAAAT 59.480 41.667 0.00 0.00 44.02 1.40
1219 1265 3.882288 GGTGTAGAACCCCAAAACGTAAA 59.118 43.478 0.00 0.00 44.02 2.01
1220 1266 3.475575 GGTGTAGAACCCCAAAACGTAA 58.524 45.455 0.00 0.00 44.02 3.18
1221 1267 3.124578 GGTGTAGAACCCCAAAACGTA 57.875 47.619 0.00 0.00 44.02 3.57
1222 1268 1.971481 GGTGTAGAACCCCAAAACGT 58.029 50.000 0.00 0.00 44.02 3.99
1248 1294 1.149627 CCGGGGTTCAGTGACCAAA 59.850 57.895 12.09 0.00 41.65 3.28
1256 1302 1.152631 AACCAAACCCGGGGTTCAG 60.153 57.895 30.75 25.07 46.20 3.02
1260 1306 2.932569 GAACCAACCAAACCCGGGGT 62.933 60.000 27.92 18.49 39.65 4.95
1262 1308 1.043673 TTGAACCAACCAAACCCGGG 61.044 55.000 22.25 22.25 0.00 5.73
1264 1310 0.818296 TGTTGAACCAACCAAACCCG 59.182 50.000 7.29 0.00 42.96 5.28
1287 1350 0.669318 TTAAGCAGCGGTGGAAGTCG 60.669 55.000 17.54 0.00 0.00 4.18
1288 1351 1.079503 CTTAAGCAGCGGTGGAAGTC 58.920 55.000 17.54 0.00 0.00 3.01
1289 1352 0.321653 CCTTAAGCAGCGGTGGAAGT 60.322 55.000 17.54 0.00 0.00 3.01
1305 1371 1.079819 CGACGTGGATGAGCACCTT 60.080 57.895 0.00 0.00 0.00 3.50
1307 1373 3.188786 GCGACGTGGATGAGCACC 61.189 66.667 0.11 0.00 0.00 5.01
1308 1374 2.432456 TGCGACGTGGATGAGCAC 60.432 61.111 0.11 0.00 32.43 4.40
1309 1375 2.125952 CTGCGACGTGGATGAGCA 60.126 61.111 0.11 0.00 36.34 4.26
1310 1376 1.875813 CTCTGCGACGTGGATGAGC 60.876 63.158 0.11 0.00 0.00 4.26
1312 1378 1.037579 ATCCTCTGCGACGTGGATGA 61.038 55.000 0.11 0.00 36.29 2.92
1313 1379 0.873312 CATCCTCTGCGACGTGGATG 60.873 60.000 13.91 13.91 44.07 3.51
1314 1380 1.439228 CATCCTCTGCGACGTGGAT 59.561 57.895 0.11 0.00 37.67 3.41
1315 1381 2.885113 CATCCTCTGCGACGTGGA 59.115 61.111 0.11 0.00 0.00 4.02
1335 1401 1.949257 CACCTTGGCGAACTTGTCC 59.051 57.895 0.00 0.00 0.00 4.02
1409 1478 0.530650 CTTCACGTCACACAGGCTGT 60.531 55.000 15.88 15.88 0.00 4.40
1419 1488 1.227527 CAGCACCACCTTCACGTCA 60.228 57.895 0.00 0.00 0.00 4.35
1513 1582 1.205893 GTCGAAGCTGAACAGGAGGAT 59.794 52.381 3.99 0.00 0.00 3.24
1519 1588 2.720758 CGCCGTCGAAGCTGAACAG 61.721 63.158 7.07 0.00 38.10 3.16
1618 1699 0.892063 ACGGAGGAGAGCAAGAAGAC 59.108 55.000 0.00 0.00 0.00 3.01
1649 1735 1.463056 TGCTTACCAATCGTTGCGAAG 59.537 47.619 0.00 0.00 39.99 3.79
1651 1737 1.514003 TTGCTTACCAATCGTTGCGA 58.486 45.000 0.00 0.00 41.13 5.10
1652 1738 2.323939 TTTGCTTACCAATCGTTGCG 57.676 45.000 0.00 0.00 32.49 4.85
1654 1740 6.761731 TCAATTTTTGCTTACCAATCGTTG 57.238 33.333 0.00 0.00 32.49 4.10
1655 1741 7.206687 TCTTCAATTTTTGCTTACCAATCGTT 58.793 30.769 0.00 0.00 32.49 3.85
1656 1742 6.744112 TCTTCAATTTTTGCTTACCAATCGT 58.256 32.000 0.00 0.00 32.49 3.73
1657 1743 7.083858 TCTCTTCAATTTTTGCTTACCAATCG 58.916 34.615 0.00 0.00 32.49 3.34
1658 1744 8.703336 GTTCTCTTCAATTTTTGCTTACCAATC 58.297 33.333 0.00 0.00 32.49 2.67
1659 1745 8.424133 AGTTCTCTTCAATTTTTGCTTACCAAT 58.576 29.630 0.00 0.00 32.49 3.16
1661 1747 7.285401 AGAGTTCTCTTCAATTTTTGCTTACCA 59.715 33.333 0.00 0.00 0.00 3.25
1662 1748 7.592903 CAGAGTTCTCTTCAATTTTTGCTTACC 59.407 37.037 0.00 0.00 0.00 2.85
1665 1751 7.105241 ACAGAGTTCTCTTCAATTTTTGCTT 57.895 32.000 0.00 0.00 0.00 3.91
1671 1766 6.489361 AGATGCAACAGAGTTCTCTTCAATTT 59.511 34.615 0.00 0.00 0.00 1.82
1676 1771 3.683822 CCAGATGCAACAGAGTTCTCTTC 59.316 47.826 0.00 0.00 0.00 2.87
1681 1776 0.807496 GGCCAGATGCAACAGAGTTC 59.193 55.000 0.00 0.00 43.89 3.01
1682 1777 0.111061 TGGCCAGATGCAACAGAGTT 59.889 50.000 0.00 0.00 43.89 3.01
1683 1778 0.322277 CTGGCCAGATGCAACAGAGT 60.322 55.000 29.88 0.00 43.89 3.24
1684 1779 1.030488 CCTGGCCAGATGCAACAGAG 61.030 60.000 34.91 9.20 43.89 3.35
1686 1781 2.707849 GCCTGGCCAGATGCAACAG 61.708 63.158 34.91 15.45 43.89 3.16
1688 1783 2.677524 TGCCTGGCCAGATGCAAC 60.678 61.111 34.91 15.37 43.89 4.17
1707 1803 3.197790 CCGTCATTGCTGCTCCCG 61.198 66.667 0.00 0.00 0.00 5.14
1742 1901 3.878519 GAGCCTCGTCGACCTCCG 61.879 72.222 10.58 0.00 40.25 4.63
1803 1962 1.138661 AGATACTGCTGCTGCTTCTCC 59.861 52.381 17.00 3.81 40.48 3.71
1841 2000 0.250338 GACGGGTAATGATCCAGCCC 60.250 60.000 0.00 0.00 36.08 5.19
1842 2001 0.468226 TGACGGGTAATGATCCAGCC 59.532 55.000 0.00 0.00 0.00 4.85
1846 2005 0.179094 TGCGTGACGGGTAATGATCC 60.179 55.000 7.25 0.00 0.00 3.36
1849 2008 0.179094 GGATGCGTGACGGGTAATGA 60.179 55.000 7.25 0.00 0.00 2.57
1857 2016 4.761745 CACATAATTAAGGATGCGTGACG 58.238 43.478 0.00 0.00 0.00 4.35
1862 2021 6.868864 AGTACTAGCACATAATTAAGGATGCG 59.131 38.462 0.00 0.00 38.12 4.73
1865 2024 9.160412 AGGAAGTACTAGCACATAATTAAGGAT 57.840 33.333 0.00 0.00 0.00 3.24
1867 2026 8.643324 AGAGGAAGTACTAGCACATAATTAAGG 58.357 37.037 0.00 0.00 0.00 2.69
1872 2031 5.540719 GGGAGAGGAAGTACTAGCACATAAT 59.459 44.000 0.00 0.00 0.00 1.28
1884 2043 1.341778 GGAACGGAGGGAGAGGAAGTA 60.342 57.143 0.00 0.00 0.00 2.24
1886 2045 0.614979 TGGAACGGAGGGAGAGGAAG 60.615 60.000 0.00 0.00 0.00 3.46
1887 2046 0.178915 TTGGAACGGAGGGAGAGGAA 60.179 55.000 0.00 0.00 0.00 3.36
1888 2047 0.178915 TTTGGAACGGAGGGAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
1889 2048 0.912486 ATTTGGAACGGAGGGAGAGG 59.088 55.000 0.00 0.00 0.00 3.69
1890 2049 2.789409 AATTTGGAACGGAGGGAGAG 57.211 50.000 0.00 0.00 0.00 3.20
1891 2050 3.178865 AGTAATTTGGAACGGAGGGAGA 58.821 45.455 0.00 0.00 0.00 3.71
1892 2051 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1893 2052 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1894 2053 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1895 2054 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1896 2055 3.581755 TGACGAGTAATTTGGAACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1897 2056 3.663995 TGACGAGTAATTTGGAACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1899 2058 3.682858 ACCATGACGAGTAATTTGGAACG 59.317 43.478 0.00 0.00 0.00 3.95
1900 2059 5.622770 AACCATGACGAGTAATTTGGAAC 57.377 39.130 0.00 0.00 0.00 3.62
1901 2060 6.642707 AAAACCATGACGAGTAATTTGGAA 57.357 33.333 0.00 0.00 0.00 3.53
1903 2062 7.141100 AGTAAAACCATGACGAGTAATTTGG 57.859 36.000 0.00 0.00 0.00 3.28
1904 2063 8.286800 TGAAGTAAAACCATGACGAGTAATTTG 58.713 33.333 0.00 0.00 0.00 2.32
1905 2064 8.385898 TGAAGTAAAACCATGACGAGTAATTT 57.614 30.769 0.00 0.00 0.00 1.82
1906 2065 7.972832 TGAAGTAAAACCATGACGAGTAATT 57.027 32.000 0.00 0.00 0.00 1.40
1907 2066 7.972832 TTGAAGTAAAACCATGACGAGTAAT 57.027 32.000 0.00 0.00 0.00 1.89
1908 2067 7.789273 TTTGAAGTAAAACCATGACGAGTAA 57.211 32.000 0.00 0.00 0.00 2.24
1909 2068 7.972832 ATTTGAAGTAAAACCATGACGAGTA 57.027 32.000 0.00 0.00 0.00 2.59
1911 2070 9.672086 TTAAATTTGAAGTAAAACCATGACGAG 57.328 29.630 0.00 0.00 0.00 4.18
1926 2085 8.466026 CGTCGTGGTTTTAGTTTAAATTTGAAG 58.534 33.333 0.00 0.00 0.00 3.02
1927 2086 8.180267 TCGTCGTGGTTTTAGTTTAAATTTGAA 58.820 29.630 0.00 0.00 0.00 2.69
1929 2088 7.895582 TCGTCGTGGTTTTAGTTTAAATTTG 57.104 32.000 0.00 0.00 0.00 2.32
1936 2095 8.344098 TCAAATTATTCGTCGTGGTTTTAGTTT 58.656 29.630 0.00 0.00 0.00 2.66
1937 2096 7.863666 TCAAATTATTCGTCGTGGTTTTAGTT 58.136 30.769 0.00 0.00 0.00 2.24
1938 2097 7.424227 TCAAATTATTCGTCGTGGTTTTAGT 57.576 32.000 0.00 0.00 0.00 2.24
1940 2099 7.320797 CGTTTCAAATTATTCGTCGTGGTTTTA 59.679 33.333 0.00 0.00 0.00 1.52
1941 2100 6.141053 CGTTTCAAATTATTCGTCGTGGTTTT 59.859 34.615 0.00 0.00 0.00 2.43
1942 2101 5.622041 CGTTTCAAATTATTCGTCGTGGTTT 59.378 36.000 0.00 0.00 0.00 3.27
1943 2102 5.050227 TCGTTTCAAATTATTCGTCGTGGTT 60.050 36.000 0.00 0.00 0.00 3.67
1946 2105 5.503376 CCTTCGTTTCAAATTATTCGTCGTG 59.497 40.000 0.00 0.00 0.00 4.35
1949 2108 6.128363 ACTCCCTTCGTTTCAAATTATTCGTC 60.128 38.462 0.00 0.00 0.00 4.20
1950 2109 5.704053 ACTCCCTTCGTTTCAAATTATTCGT 59.296 36.000 0.00 0.00 0.00 3.85
1952 2111 7.148306 TGCTACTCCCTTCGTTTCAAATTATTC 60.148 37.037 0.00 0.00 0.00 1.75
1953 2112 6.657541 TGCTACTCCCTTCGTTTCAAATTATT 59.342 34.615 0.00 0.00 0.00 1.40
1954 2113 6.177610 TGCTACTCCCTTCGTTTCAAATTAT 58.822 36.000 0.00 0.00 0.00 1.28
1957 2116 4.015872 TGCTACTCCCTTCGTTTCAAAT 57.984 40.909 0.00 0.00 0.00 2.32
1959 2118 3.135994 GTTGCTACTCCCTTCGTTTCAA 58.864 45.455 0.00 0.00 0.00 2.69
1960 2119 2.367567 AGTTGCTACTCCCTTCGTTTCA 59.632 45.455 0.00 0.00 0.00 2.69
1961 2120 3.041508 AGTTGCTACTCCCTTCGTTTC 57.958 47.619 0.00 0.00 0.00 2.78
1962 2121 4.612264 TTAGTTGCTACTCCCTTCGTTT 57.388 40.909 3.45 0.00 35.78 3.60
1963 2122 4.820894 ATTAGTTGCTACTCCCTTCGTT 57.179 40.909 3.45 0.00 35.78 3.85
1964 2123 4.820894 AATTAGTTGCTACTCCCTTCGT 57.179 40.909 3.45 0.00 35.78 3.85
1967 2126 4.514401 CCGAAATTAGTTGCTACTCCCTT 58.486 43.478 3.45 0.00 35.78 3.95
1968 2127 3.118371 CCCGAAATTAGTTGCTACTCCCT 60.118 47.826 3.45 0.00 35.78 4.20
1972 2131 2.640184 GGCCCGAAATTAGTTGCTACT 58.360 47.619 6.00 6.00 38.44 2.57
1991 2150 0.394216 TCTGCACCCAAATGATCCGG 60.394 55.000 0.00 0.00 0.00 5.14
1992 2151 1.133025 GTTCTGCACCCAAATGATCCG 59.867 52.381 0.00 0.00 0.00 4.18
2092 2255 1.961277 GTGTGCTTCAGGGTCACCG 60.961 63.158 0.00 0.00 43.47 4.94
2093 2256 1.600916 GGTGTGCTTCAGGGTCACC 60.601 63.158 0.00 0.00 40.99 4.02
2290 2462 1.473257 GGCTGATACAGTTGATCGCCA 60.473 52.381 11.35 0.00 40.07 5.69
2300 2472 1.823828 GACACGTACGGCTGATACAG 58.176 55.000 21.06 0.00 34.12 2.74
2481 2699 5.258622 CAAGAAATTAGGCGAACAATCTCG 58.741 41.667 0.00 0.00 41.84 4.04
2505 2723 5.130292 AGCACAAAGATGACAATTTCAGG 57.870 39.130 0.00 0.00 37.77 3.86
2744 2968 0.861837 GCGTCAGTTCACTTCACAGG 59.138 55.000 0.00 0.00 0.00 4.00
2746 2970 2.017138 TTGCGTCAGTTCACTTCACA 57.983 45.000 0.00 0.00 0.00 3.58
2844 3076 4.070552 AAGCGTGAGGGACCGAGC 62.071 66.667 0.00 0.00 0.00 5.03
2915 3147 0.749454 GAAGGATTCATGCAGCCCGT 60.749 55.000 0.00 0.00 46.62 5.28
2957 3189 6.717289 AGTATCAAGCAGTGGTAATTTGGTA 58.283 36.000 0.00 0.00 0.00 3.25
2959 3191 6.150976 TCAAGTATCAAGCAGTGGTAATTTGG 59.849 38.462 0.00 0.00 28.66 3.28
2968 3200 4.493708 CGCTGATTCAAGTATCAAGCAGTG 60.494 45.833 0.00 0.00 39.40 3.66
2975 3207 2.103094 CCTCCCGCTGATTCAAGTATCA 59.897 50.000 0.00 0.00 33.66 2.15
2979 3211 1.207791 ATCCTCCCGCTGATTCAAGT 58.792 50.000 0.00 0.00 0.00 3.16
2994 3226 3.245948 TGGGGAGCACCAAAAATAATCCT 60.246 43.478 1.58 0.00 42.91 3.24
3000 3232 1.194121 GCCTGGGGAGCACCAAAAAT 61.194 55.000 1.58 0.00 40.68 1.82
3001 3233 1.836604 GCCTGGGGAGCACCAAAAA 60.837 57.895 1.58 0.00 40.68 1.94
3002 3234 2.203625 GCCTGGGGAGCACCAAAA 60.204 61.111 1.58 0.00 40.68 2.44
3071 3303 0.464036 AAACTCGCCTGACTGACACA 59.536 50.000 0.00 0.00 0.00 3.72
3084 3316 0.515564 CTTGTTGCGGGGTAAACTCG 59.484 55.000 0.00 0.00 0.00 4.18
3095 3327 1.670811 ACACCTGTCTTTCTTGTTGCG 59.329 47.619 0.00 0.00 0.00 4.85
3096 3328 2.682856 TGACACCTGTCTTTCTTGTTGC 59.317 45.455 6.97 0.00 44.99 4.17
3097 3329 3.941483 ACTGACACCTGTCTTTCTTGTTG 59.059 43.478 6.97 0.00 44.99 3.33
3099 3331 3.914426 ACTGACACCTGTCTTTCTTGT 57.086 42.857 6.97 0.00 44.99 3.16
3100 3332 4.950050 AGTACTGACACCTGTCTTTCTTG 58.050 43.478 6.97 0.00 44.99 3.02
3103 3335 5.010820 ACCTTAGTACTGACACCTGTCTTTC 59.989 44.000 5.39 0.00 44.99 2.62
3104 3336 4.900054 ACCTTAGTACTGACACCTGTCTTT 59.100 41.667 5.39 0.00 44.99 2.52
3107 3339 3.825014 TCACCTTAGTACTGACACCTGTC 59.175 47.826 5.39 0.00 44.97 3.51
3109 3341 5.407407 AATCACCTTAGTACTGACACCTG 57.593 43.478 5.39 0.00 0.00 4.00
3151 3383 6.037098 CGAGTTGGAGAAGACGAATAGATTT 58.963 40.000 0.00 0.00 0.00 2.17
3153 3385 4.882427 TCGAGTTGGAGAAGACGAATAGAT 59.118 41.667 0.00 0.00 0.00 1.98
3154 3386 4.259356 TCGAGTTGGAGAAGACGAATAGA 58.741 43.478 0.00 0.00 0.00 1.98
3155 3387 4.617808 TCGAGTTGGAGAAGACGAATAG 57.382 45.455 0.00 0.00 0.00 1.73
3156 3388 4.638865 TGATCGAGTTGGAGAAGACGAATA 59.361 41.667 0.00 0.00 33.77 1.75
3158 3390 2.817844 TGATCGAGTTGGAGAAGACGAA 59.182 45.455 0.00 0.00 33.77 3.85
3159 3391 2.161808 GTGATCGAGTTGGAGAAGACGA 59.838 50.000 0.00 0.00 0.00 4.20
3160 3392 2.095212 TGTGATCGAGTTGGAGAAGACG 60.095 50.000 0.00 0.00 0.00 4.18
3161 3393 3.246619 GTGTGATCGAGTTGGAGAAGAC 58.753 50.000 0.00 0.00 0.00 3.01
3162 3394 2.890945 TGTGTGATCGAGTTGGAGAAGA 59.109 45.455 0.00 0.00 0.00 2.87
3163 3395 3.303881 TGTGTGATCGAGTTGGAGAAG 57.696 47.619 0.00 0.00 0.00 2.85
3164 3396 3.961480 ATGTGTGATCGAGTTGGAGAA 57.039 42.857 0.00 0.00 0.00 2.87
3165 3397 4.402474 ACATATGTGTGATCGAGTTGGAGA 59.598 41.667 7.78 0.00 37.14 3.71
3166 3398 4.686972 ACATATGTGTGATCGAGTTGGAG 58.313 43.478 7.78 0.00 37.14 3.86
3167 3399 4.159506 TGACATATGTGTGATCGAGTTGGA 59.840 41.667 14.43 0.00 39.09 3.53
3168 3400 4.268644 GTGACATATGTGTGATCGAGTTGG 59.731 45.833 14.43 0.00 39.09 3.77
3178 3989 6.253013 CAACTAGCATTGTGACATATGTGTG 58.747 40.000 14.43 5.40 39.09 3.82
3179 3990 5.163723 GCAACTAGCATTGTGACATATGTGT 60.164 40.000 14.43 0.00 44.79 3.72
3180 3991 5.268544 GCAACTAGCATTGTGACATATGTG 58.731 41.667 14.43 0.00 44.79 3.21
3201 4012 2.256306 TGTCATCTAGTGTTGGAGGCA 58.744 47.619 0.00 0.00 0.00 4.75
3214 4025 7.341030 TGTTGGATCTTAATGTGATGTCATCT 58.659 34.615 13.90 0.00 0.00 2.90
3233 4044 3.760738 TGTGTTGGCATCTATTGTTGGA 58.239 40.909 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.