Multiple sequence alignment - TraesCS4D01G248300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G248300 chr4D 100.000 3017 0 0 1 3017 417387554 417390570 0.000000e+00 5572
1 TraesCS4D01G248300 chr4D 97.911 2776 51 4 243 3017 164897221 164899990 0.000000e+00 4798
2 TraesCS4D01G248300 chr6D 98.739 2776 33 2 243 3017 51499505 51502279 0.000000e+00 4931
3 TraesCS4D01G248300 chr6D 98.091 2777 46 5 243 3017 472511004 472513775 0.000000e+00 4828
4 TraesCS4D01G248300 chr7D 98.559 2776 39 1 243 3017 115100313 115103088 0.000000e+00 4903
5 TraesCS4D01G248300 chr7D 98.305 2773 44 3 246 3017 54583722 54580952 0.000000e+00 4857
6 TraesCS4D01G248300 chr7D 98.125 2773 51 1 246 3017 245402387 245399615 0.000000e+00 4831
7 TraesCS4D01G248300 chr5D 98.413 2773 41 3 246 3017 75136788 75134018 0.000000e+00 4874
8 TraesCS4D01G248300 chr5D 98.307 2776 45 2 243 3017 565815843 565818617 0.000000e+00 4865
9 TraesCS4D01G248300 chr5D 98.269 2773 46 2 246 3017 260689918 260687147 0.000000e+00 4854
10 TraesCS4D01G248300 chr4B 86.911 191 23 2 1 191 294880569 294880381 2.360000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G248300 chr4D 417387554 417390570 3016 False 5572 5572 100.000 1 3017 1 chr4D.!!$F2 3016
1 TraesCS4D01G248300 chr4D 164897221 164899990 2769 False 4798 4798 97.911 243 3017 1 chr4D.!!$F1 2774
2 TraesCS4D01G248300 chr6D 51499505 51502279 2774 False 4931 4931 98.739 243 3017 1 chr6D.!!$F1 2774
3 TraesCS4D01G248300 chr6D 472511004 472513775 2771 False 4828 4828 98.091 243 3017 1 chr6D.!!$F2 2774
4 TraesCS4D01G248300 chr7D 115100313 115103088 2775 False 4903 4903 98.559 243 3017 1 chr7D.!!$F1 2774
5 TraesCS4D01G248300 chr7D 54580952 54583722 2770 True 4857 4857 98.305 246 3017 1 chr7D.!!$R1 2771
6 TraesCS4D01G248300 chr7D 245399615 245402387 2772 True 4831 4831 98.125 246 3017 1 chr7D.!!$R2 2771
7 TraesCS4D01G248300 chr5D 75134018 75136788 2770 True 4874 4874 98.413 246 3017 1 chr5D.!!$R1 2771
8 TraesCS4D01G248300 chr5D 565815843 565818617 2774 False 4865 4865 98.307 243 3017 1 chr5D.!!$F1 2774
9 TraesCS4D01G248300 chr5D 260687147 260689918 2771 True 4854 4854 98.269 246 3017 1 chr5D.!!$R2 2771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.108804 TTGGCTAGTAGCACTCGCAC 60.109 55.0 23.24 5.04 44.75 5.34 F
138 139 0.108804 GGCTAGTAGCACTCGCACAA 60.109 55.0 23.24 0.00 44.75 3.33 F
195 196 0.110192 CTCCTTTTTCGCGTTGCTCC 60.110 55.0 5.77 0.00 0.00 4.70 F
198 199 0.110192 CTTTTTCGCGTTGCTCCCTC 60.110 55.0 5.77 0.00 0.00 4.30 F
205 206 0.449388 GCGTTGCTCCCTCAATCTTG 59.551 55.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1725 0.979665 CCTCCTCAACTGCCTTCTGA 59.020 55.000 0.00 0.00 0.00 3.27 R
1812 1815 1.109323 ACCTGTGTTCCTTGGCAAGC 61.109 55.000 21.77 8.95 0.00 4.01 R
1865 1868 2.039879 TCCTTCTTTGCCTTCCTGGTAC 59.960 50.000 0.00 0.00 38.35 3.34 R
1900 1907 6.426633 GCCTTCTCTATCTTAAGCAAATCTCC 59.573 42.308 0.00 0.00 0.00 3.71 R
2108 2115 9.142014 ACATAGACTAGATTAGCTTCACATTCT 57.858 33.333 0.00 0.00 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.594788 TGCTCCATCTTTTAGAAATTTGCT 57.405 33.333 0.00 0.00 0.00 3.91
25 26 6.624423 TGCTCCATCTTTTAGAAATTTGCTC 58.376 36.000 0.00 0.00 0.00 4.26
26 27 5.741040 GCTCCATCTTTTAGAAATTTGCTCG 59.259 40.000 0.00 0.00 0.00 5.03
27 28 6.623767 GCTCCATCTTTTAGAAATTTGCTCGT 60.624 38.462 0.00 0.00 0.00 4.18
28 29 6.611381 TCCATCTTTTAGAAATTTGCTCGTG 58.389 36.000 0.00 0.00 0.00 4.35
29 30 6.429692 TCCATCTTTTAGAAATTTGCTCGTGA 59.570 34.615 0.00 0.00 0.00 4.35
30 31 7.121168 TCCATCTTTTAGAAATTTGCTCGTGAT 59.879 33.333 0.00 0.00 0.00 3.06
31 32 7.756722 CCATCTTTTAGAAATTTGCTCGTGATT 59.243 33.333 0.00 0.00 0.00 2.57
32 33 9.132521 CATCTTTTAGAAATTTGCTCGTGATTT 57.867 29.630 0.00 0.00 0.00 2.17
33 34 9.696917 ATCTTTTAGAAATTTGCTCGTGATTTT 57.303 25.926 0.00 0.00 0.00 1.82
34 35 9.528018 TCTTTTAGAAATTTGCTCGTGATTTTT 57.472 25.926 0.00 0.00 0.00 1.94
60 61 8.417780 TTTTCAAGTGTTATGTTTTGTGGATG 57.582 30.769 0.00 0.00 0.00 3.51
61 62 6.083098 TCAAGTGTTATGTTTTGTGGATGG 57.917 37.500 0.00 0.00 0.00 3.51
62 63 5.830457 TCAAGTGTTATGTTTTGTGGATGGA 59.170 36.000 0.00 0.00 0.00 3.41
63 64 6.493115 TCAAGTGTTATGTTTTGTGGATGGAT 59.507 34.615 0.00 0.00 0.00 3.41
64 65 6.916360 AGTGTTATGTTTTGTGGATGGATT 57.084 33.333 0.00 0.00 0.00 3.01
65 66 7.301868 AGTGTTATGTTTTGTGGATGGATTT 57.698 32.000 0.00 0.00 0.00 2.17
66 67 8.415950 AGTGTTATGTTTTGTGGATGGATTTA 57.584 30.769 0.00 0.00 0.00 1.40
67 68 8.522830 AGTGTTATGTTTTGTGGATGGATTTAG 58.477 33.333 0.00 0.00 0.00 1.85
68 69 7.759433 GTGTTATGTTTTGTGGATGGATTTAGG 59.241 37.037 0.00 0.00 0.00 2.69
69 70 7.453126 TGTTATGTTTTGTGGATGGATTTAGGT 59.547 33.333 0.00 0.00 0.00 3.08
70 71 5.975693 TGTTTTGTGGATGGATTTAGGTC 57.024 39.130 0.00 0.00 0.00 3.85
71 72 5.640147 TGTTTTGTGGATGGATTTAGGTCT 58.360 37.500 0.00 0.00 0.00 3.85
72 73 6.074648 TGTTTTGTGGATGGATTTAGGTCTT 58.925 36.000 0.00 0.00 0.00 3.01
73 74 6.208599 TGTTTTGTGGATGGATTTAGGTCTTC 59.791 38.462 0.00 0.00 0.00 2.87
74 75 5.779241 TTGTGGATGGATTTAGGTCTTCT 57.221 39.130 0.00 0.00 0.00 2.85
75 76 5.102953 TGTGGATGGATTTAGGTCTTCTG 57.897 43.478 0.00 0.00 0.00 3.02
76 77 4.080356 TGTGGATGGATTTAGGTCTTCTGG 60.080 45.833 0.00 0.00 0.00 3.86
77 78 4.080299 GTGGATGGATTTAGGTCTTCTGGT 60.080 45.833 0.00 0.00 0.00 4.00
78 79 5.130477 GTGGATGGATTTAGGTCTTCTGGTA 59.870 44.000 0.00 0.00 0.00 3.25
79 80 5.911178 TGGATGGATTTAGGTCTTCTGGTAT 59.089 40.000 0.00 0.00 0.00 2.73
80 81 6.043243 TGGATGGATTTAGGTCTTCTGGTATC 59.957 42.308 0.00 0.00 0.00 2.24
81 82 5.531122 TGGATTTAGGTCTTCTGGTATCG 57.469 43.478 0.00 0.00 0.00 2.92
82 83 4.960469 TGGATTTAGGTCTTCTGGTATCGT 59.040 41.667 0.00 0.00 0.00 3.73
83 84 5.163447 TGGATTTAGGTCTTCTGGTATCGTG 60.163 44.000 0.00 0.00 0.00 4.35
84 85 5.068723 GGATTTAGGTCTTCTGGTATCGTGA 59.931 44.000 0.00 0.00 0.00 4.35
85 86 6.239345 GGATTTAGGTCTTCTGGTATCGTGAT 60.239 42.308 0.00 0.00 0.00 3.06
86 87 5.515797 TTAGGTCTTCTGGTATCGTGATG 57.484 43.478 0.00 0.00 0.00 3.07
87 88 3.366396 AGGTCTTCTGGTATCGTGATGT 58.634 45.455 0.00 0.00 0.00 3.06
88 89 4.533815 AGGTCTTCTGGTATCGTGATGTA 58.466 43.478 0.00 0.00 0.00 2.29
89 90 5.141182 AGGTCTTCTGGTATCGTGATGTAT 58.859 41.667 0.00 0.00 0.00 2.29
90 91 5.598830 AGGTCTTCTGGTATCGTGATGTATT 59.401 40.000 0.00 0.00 0.00 1.89
91 92 6.098409 AGGTCTTCTGGTATCGTGATGTATTT 59.902 38.462 0.00 0.00 0.00 1.40
92 93 6.421202 GGTCTTCTGGTATCGTGATGTATTTC 59.579 42.308 0.00 0.00 0.00 2.17
93 94 6.421202 GTCTTCTGGTATCGTGATGTATTTCC 59.579 42.308 0.00 0.00 0.00 3.13
94 95 5.862678 TCTGGTATCGTGATGTATTTCCA 57.137 39.130 0.00 0.00 0.00 3.53
95 96 6.419484 TCTGGTATCGTGATGTATTTCCAT 57.581 37.500 0.00 0.00 0.00 3.41
96 97 6.455647 TCTGGTATCGTGATGTATTTCCATC 58.544 40.000 0.00 0.00 41.32 3.51
97 98 6.041523 TCTGGTATCGTGATGTATTTCCATCA 59.958 38.462 0.00 0.00 46.74 3.07
107 108 8.722480 TGATGTATTTCCATCAGTAAGACTTG 57.278 34.615 0.00 0.00 44.70 3.16
108 109 8.539544 TGATGTATTTCCATCAGTAAGACTTGA 58.460 33.333 0.00 0.00 44.70 3.02
109 110 8.723942 ATGTATTTCCATCAGTAAGACTTGAC 57.276 34.615 0.00 0.00 0.00 3.18
110 111 7.676004 TGTATTTCCATCAGTAAGACTTGACA 58.324 34.615 0.00 0.00 0.00 3.58
111 112 7.819415 TGTATTTCCATCAGTAAGACTTGACAG 59.181 37.037 0.00 0.00 0.00 3.51
112 113 4.808414 TCCATCAGTAAGACTTGACAGG 57.192 45.455 0.00 0.00 0.00 4.00
113 114 3.055819 TCCATCAGTAAGACTTGACAGGC 60.056 47.826 0.00 0.00 0.00 4.85
114 115 2.724977 TCAGTAAGACTTGACAGGCG 57.275 50.000 0.00 0.00 30.31 5.52
115 116 1.071605 CAGTAAGACTTGACAGGCGC 58.928 55.000 0.00 0.00 30.31 6.53
116 117 0.969894 AGTAAGACTTGACAGGCGCT 59.030 50.000 7.64 0.00 30.31 5.92
117 118 1.344763 AGTAAGACTTGACAGGCGCTT 59.655 47.619 7.64 0.00 30.31 4.68
118 119 2.143925 GTAAGACTTGACAGGCGCTTT 58.856 47.619 7.64 0.00 30.31 3.51
119 120 0.947244 AAGACTTGACAGGCGCTTTG 59.053 50.000 7.64 9.25 30.31 2.77
120 121 0.886490 AGACTTGACAGGCGCTTTGG 60.886 55.000 7.64 0.00 30.31 3.28
121 122 2.256461 CTTGACAGGCGCTTTGGC 59.744 61.111 7.64 9.54 45.27 4.52
128 129 3.410958 GGCGCTTTGGCTAGTAGC 58.589 61.111 14.09 14.09 41.46 3.58
129 130 1.449601 GGCGCTTTGGCTAGTAGCA 60.450 57.895 23.24 7.28 44.75 3.49
130 131 1.706287 GGCGCTTTGGCTAGTAGCAC 61.706 60.000 23.24 13.06 44.75 4.40
131 132 0.741221 GCGCTTTGGCTAGTAGCACT 60.741 55.000 23.24 0.00 44.75 4.40
132 133 1.281899 CGCTTTGGCTAGTAGCACTC 58.718 55.000 23.24 7.18 44.75 3.51
133 134 1.281899 GCTTTGGCTAGTAGCACTCG 58.718 55.000 23.24 9.87 44.75 4.18
134 135 1.281899 CTTTGGCTAGTAGCACTCGC 58.718 55.000 23.24 6.45 44.75 5.03
135 136 0.606096 TTTGGCTAGTAGCACTCGCA 59.394 50.000 23.24 9.03 44.75 5.10
136 137 0.108804 TTGGCTAGTAGCACTCGCAC 60.109 55.000 23.24 5.04 44.75 5.34
137 138 1.248101 TGGCTAGTAGCACTCGCACA 61.248 55.000 23.24 7.62 44.75 4.57
138 139 0.108804 GGCTAGTAGCACTCGCACAA 60.109 55.000 23.24 0.00 44.75 3.33
139 140 1.671850 GGCTAGTAGCACTCGCACAAA 60.672 52.381 23.24 0.00 44.75 2.83
140 141 2.271800 GCTAGTAGCACTCGCACAAAT 58.728 47.619 17.47 0.00 41.89 2.32
141 142 3.444916 GCTAGTAGCACTCGCACAAATA 58.555 45.455 17.47 0.00 41.89 1.40
142 143 3.487574 GCTAGTAGCACTCGCACAAATAG 59.512 47.826 17.47 0.00 41.89 1.73
143 144 2.271800 AGTAGCACTCGCACAAATAGC 58.728 47.619 0.00 0.00 42.27 2.97
152 153 1.058748 CACAAATAGCGTGCGGTCG 59.941 57.895 0.00 0.00 0.00 4.79
163 164 2.813908 GCGGTCGCAGGTTCGAAT 60.814 61.111 10.67 0.00 40.43 3.34
164 165 2.799540 GCGGTCGCAGGTTCGAATC 61.800 63.158 10.67 0.00 40.43 2.52
165 166 2.165301 CGGTCGCAGGTTCGAATCC 61.165 63.158 4.40 6.73 40.43 3.01
166 167 1.814169 GGTCGCAGGTTCGAATCCC 60.814 63.158 4.40 0.05 40.43 3.85
167 168 2.165301 GTCGCAGGTTCGAATCCCG 61.165 63.158 4.40 8.71 40.43 5.14
168 169 2.890474 CGCAGGTTCGAATCCCGG 60.890 66.667 4.40 2.60 39.14 5.73
169 170 3.202706 GCAGGTTCGAATCCCGGC 61.203 66.667 12.75 12.75 39.14 6.13
170 171 2.267642 CAGGTTCGAATCCCGGCA 59.732 61.111 4.40 0.00 39.14 5.69
171 172 1.376683 CAGGTTCGAATCCCGGCAA 60.377 57.895 4.40 0.00 39.14 4.52
172 173 1.376812 AGGTTCGAATCCCGGCAAC 60.377 57.895 4.40 0.00 39.14 4.17
173 174 1.673009 GGTTCGAATCCCGGCAACA 60.673 57.895 0.00 0.00 39.14 3.33
174 175 1.500396 GTTCGAATCCCGGCAACAC 59.500 57.895 0.00 0.00 39.14 3.32
175 176 0.953960 GTTCGAATCCCGGCAACACT 60.954 55.000 0.00 0.00 39.14 3.55
176 177 0.672401 TTCGAATCCCGGCAACACTC 60.672 55.000 0.00 0.00 39.14 3.51
177 178 1.079127 CGAATCCCGGCAACACTCT 60.079 57.895 0.00 0.00 33.91 3.24
178 179 1.084370 CGAATCCCGGCAACACTCTC 61.084 60.000 0.00 0.00 33.91 3.20
179 180 0.744771 GAATCCCGGCAACACTCTCC 60.745 60.000 0.00 0.00 0.00 3.71
180 181 1.201429 AATCCCGGCAACACTCTCCT 61.201 55.000 0.00 0.00 0.00 3.69
181 182 1.201429 ATCCCGGCAACACTCTCCTT 61.201 55.000 0.00 0.00 0.00 3.36
182 183 1.073199 CCCGGCAACACTCTCCTTT 59.927 57.895 0.00 0.00 0.00 3.11
183 184 0.537371 CCCGGCAACACTCTCCTTTT 60.537 55.000 0.00 0.00 0.00 2.27
184 185 1.318576 CCGGCAACACTCTCCTTTTT 58.681 50.000 0.00 0.00 0.00 1.94
185 186 1.266989 CCGGCAACACTCTCCTTTTTC 59.733 52.381 0.00 0.00 0.00 2.29
186 187 1.069906 CGGCAACACTCTCCTTTTTCG 60.070 52.381 0.00 0.00 0.00 3.46
187 188 1.335051 GGCAACACTCTCCTTTTTCGC 60.335 52.381 0.00 0.00 0.00 4.70
188 189 1.660333 GCAACACTCTCCTTTTTCGCG 60.660 52.381 0.00 0.00 0.00 5.87
189 190 1.597663 CAACACTCTCCTTTTTCGCGT 59.402 47.619 5.77 0.00 0.00 6.01
190 191 1.949465 ACACTCTCCTTTTTCGCGTT 58.051 45.000 5.77 0.00 0.00 4.84
191 192 1.597663 ACACTCTCCTTTTTCGCGTTG 59.402 47.619 5.77 0.00 0.00 4.10
192 193 0.586802 ACTCTCCTTTTTCGCGTTGC 59.413 50.000 5.77 0.00 0.00 4.17
193 194 0.868406 CTCTCCTTTTTCGCGTTGCT 59.132 50.000 5.77 0.00 0.00 3.91
194 195 0.865769 TCTCCTTTTTCGCGTTGCTC 59.134 50.000 5.77 0.00 0.00 4.26
195 196 0.110192 CTCCTTTTTCGCGTTGCTCC 60.110 55.000 5.77 0.00 0.00 4.70
196 197 1.081442 CCTTTTTCGCGTTGCTCCC 60.081 57.895 5.77 0.00 0.00 4.30
197 198 1.515521 CCTTTTTCGCGTTGCTCCCT 61.516 55.000 5.77 0.00 0.00 4.20
198 199 0.110192 CTTTTTCGCGTTGCTCCCTC 60.110 55.000 5.77 0.00 0.00 4.30
199 200 0.816018 TTTTTCGCGTTGCTCCCTCA 60.816 50.000 5.77 0.00 0.00 3.86
200 201 0.816018 TTTTCGCGTTGCTCCCTCAA 60.816 50.000 5.77 0.00 0.00 3.02
201 202 0.605319 TTTCGCGTTGCTCCCTCAAT 60.605 50.000 5.77 0.00 0.00 2.57
202 203 1.019278 TTCGCGTTGCTCCCTCAATC 61.019 55.000 5.77 0.00 0.00 2.67
203 204 1.448540 CGCGTTGCTCCCTCAATCT 60.449 57.895 0.00 0.00 0.00 2.40
204 205 1.021390 CGCGTTGCTCCCTCAATCTT 61.021 55.000 0.00 0.00 0.00 2.40
205 206 0.449388 GCGTTGCTCCCTCAATCTTG 59.551 55.000 0.00 0.00 0.00 3.02
206 207 1.089920 CGTTGCTCCCTCAATCTTGG 58.910 55.000 0.00 0.00 0.00 3.61
207 208 1.339055 CGTTGCTCCCTCAATCTTGGA 60.339 52.381 0.00 0.00 0.00 3.53
208 209 2.363683 GTTGCTCCCTCAATCTTGGAG 58.636 52.381 0.00 0.00 46.87 3.86
209 210 1.661463 TGCTCCCTCAATCTTGGAGT 58.339 50.000 6.64 0.00 46.05 3.85
210 211 2.832838 TGCTCCCTCAATCTTGGAGTA 58.167 47.619 6.64 0.00 46.05 2.59
211 212 2.768527 TGCTCCCTCAATCTTGGAGTAG 59.231 50.000 6.64 0.00 46.05 2.57
212 213 3.034635 GCTCCCTCAATCTTGGAGTAGA 58.965 50.000 6.64 0.00 46.05 2.59
213 214 3.181470 GCTCCCTCAATCTTGGAGTAGAC 60.181 52.174 6.64 0.00 46.05 2.59
214 215 3.024547 TCCCTCAATCTTGGAGTAGACG 58.975 50.000 0.00 0.00 0.00 4.18
215 216 3.024547 CCCTCAATCTTGGAGTAGACGA 58.975 50.000 0.00 0.00 0.00 4.20
216 217 3.067461 CCCTCAATCTTGGAGTAGACGAG 59.933 52.174 0.00 0.00 31.50 4.18
217 218 3.948473 CCTCAATCTTGGAGTAGACGAGA 59.052 47.826 0.00 0.00 32.58 4.04
218 219 4.201970 CCTCAATCTTGGAGTAGACGAGAC 60.202 50.000 0.00 0.00 32.58 3.36
219 220 4.332828 TCAATCTTGGAGTAGACGAGACA 58.667 43.478 0.00 0.00 31.48 3.41
220 221 4.950475 TCAATCTTGGAGTAGACGAGACAT 59.050 41.667 0.00 0.00 31.48 3.06
221 222 6.120220 TCAATCTTGGAGTAGACGAGACATA 58.880 40.000 0.00 0.00 31.48 2.29
222 223 6.038382 TCAATCTTGGAGTAGACGAGACATAC 59.962 42.308 0.00 0.00 31.48 2.39
223 224 4.840271 TCTTGGAGTAGACGAGACATACA 58.160 43.478 0.00 0.00 0.00 2.29
224 225 5.250982 TCTTGGAGTAGACGAGACATACAA 58.749 41.667 0.00 0.00 0.00 2.41
225 226 5.886474 TCTTGGAGTAGACGAGACATACAAT 59.114 40.000 0.00 0.00 0.00 2.71
226 227 6.377429 TCTTGGAGTAGACGAGACATACAATT 59.623 38.462 0.00 0.00 0.00 2.32
227 228 6.132791 TGGAGTAGACGAGACATACAATTC 57.867 41.667 0.00 0.00 0.00 2.17
228 229 5.206299 GGAGTAGACGAGACATACAATTCG 58.794 45.833 0.00 0.00 38.88 3.34
232 233 2.793933 ACGAGACATACAATTCGTCGG 58.206 47.619 0.00 0.00 41.97 4.79
233 234 2.421073 ACGAGACATACAATTCGTCGGA 59.579 45.455 0.00 0.00 41.97 4.55
234 235 2.782192 CGAGACATACAATTCGTCGGAC 59.218 50.000 0.00 0.00 34.80 4.79
235 236 3.114065 GAGACATACAATTCGTCGGACC 58.886 50.000 1.91 0.00 34.80 4.46
236 237 2.494471 AGACATACAATTCGTCGGACCA 59.506 45.455 1.91 0.00 34.80 4.02
237 238 3.056393 AGACATACAATTCGTCGGACCAA 60.056 43.478 1.91 0.00 34.80 3.67
238 239 3.666274 ACATACAATTCGTCGGACCAAA 58.334 40.909 1.91 0.00 0.00 3.28
239 240 4.258543 ACATACAATTCGTCGGACCAAAT 58.741 39.130 1.91 0.32 0.00 2.32
240 241 5.421277 ACATACAATTCGTCGGACCAAATA 58.579 37.500 1.91 0.00 0.00 1.40
241 242 5.522460 ACATACAATTCGTCGGACCAAATAG 59.478 40.000 1.91 0.00 0.00 1.73
244 245 2.684001 TTCGTCGGACCAAATAGCAT 57.316 45.000 1.91 0.00 0.00 3.79
1276 1279 9.793259 GAGGGATATGGTTACTATCAAAAATGA 57.207 33.333 0.00 0.00 0.00 2.57
1340 1343 3.128764 GCAGGTTGGGTTTCAGTTATAGC 59.871 47.826 0.00 0.00 0.00 2.97
1471 1474 6.349243 TCAATTTCCAAATGCAGAGTGAAT 57.651 33.333 0.00 0.00 0.00 2.57
1722 1725 2.718456 AGGGTAGGCCACATGGATAAT 58.282 47.619 5.01 0.00 37.39 1.28
1812 1815 3.269178 GGTTCAGATGGAGAAGCTCAAG 58.731 50.000 0.00 0.00 39.64 3.02
1827 1830 1.000938 CTCAAGCTTGCCAAGGAACAC 60.001 52.381 21.99 0.00 0.00 3.32
1865 1868 4.197750 AGCCAAGCTGACATTATCAAGAG 58.802 43.478 0.00 0.00 37.57 2.85
1900 1907 1.981495 AGAAGGAGGTTGAACAGGAGG 59.019 52.381 0.00 0.00 0.00 4.30
2108 2115 5.725551 AGATATGGGGTGTACATTTTGGA 57.274 39.130 0.00 0.00 0.00 3.53
2775 2782 5.164119 CGTTACGATTGAGAGTTGTTGGTAC 60.164 44.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.996509 AGCAAATTTCTAAAAGATGGAGCAA 58.003 32.000 0.00 0.00 0.00 3.91
1 2 6.594788 AGCAAATTTCTAAAAGATGGAGCA 57.405 33.333 0.00 0.00 0.00 4.26
2 3 5.741040 CGAGCAAATTTCTAAAAGATGGAGC 59.259 40.000 0.00 0.00 0.00 4.70
3 4 6.744537 CACGAGCAAATTTCTAAAAGATGGAG 59.255 38.462 0.00 0.00 0.00 3.86
4 5 6.429692 TCACGAGCAAATTTCTAAAAGATGGA 59.570 34.615 0.00 0.00 0.00 3.41
5 6 6.611381 TCACGAGCAAATTTCTAAAAGATGG 58.389 36.000 0.00 0.00 0.00 3.51
6 7 8.679288 AATCACGAGCAAATTTCTAAAAGATG 57.321 30.769 0.00 0.00 0.00 2.90
7 8 9.696917 AAAATCACGAGCAAATTTCTAAAAGAT 57.303 25.926 0.00 0.00 0.00 2.40
8 9 9.528018 AAAAATCACGAGCAAATTTCTAAAAGA 57.472 25.926 0.00 0.00 0.00 2.52
34 35 8.877779 CATCCACAAAACATAACACTTGAAAAA 58.122 29.630 0.00 0.00 0.00 1.94
35 36 7.493971 CCATCCACAAAACATAACACTTGAAAA 59.506 33.333 0.00 0.00 0.00 2.29
36 37 6.983307 CCATCCACAAAACATAACACTTGAAA 59.017 34.615 0.00 0.00 0.00 2.69
37 38 6.322456 TCCATCCACAAAACATAACACTTGAA 59.678 34.615 0.00 0.00 0.00 2.69
38 39 5.830457 TCCATCCACAAAACATAACACTTGA 59.170 36.000 0.00 0.00 0.00 3.02
39 40 6.083098 TCCATCCACAAAACATAACACTTG 57.917 37.500 0.00 0.00 0.00 3.16
40 41 6.916360 ATCCATCCACAAAACATAACACTT 57.084 33.333 0.00 0.00 0.00 3.16
41 42 6.916360 AATCCATCCACAAAACATAACACT 57.084 33.333 0.00 0.00 0.00 3.55
42 43 7.759433 CCTAAATCCATCCACAAAACATAACAC 59.241 37.037 0.00 0.00 0.00 3.32
43 44 7.453126 ACCTAAATCCATCCACAAAACATAACA 59.547 33.333 0.00 0.00 0.00 2.41
44 45 7.836842 ACCTAAATCCATCCACAAAACATAAC 58.163 34.615 0.00 0.00 0.00 1.89
45 46 7.893302 AGACCTAAATCCATCCACAAAACATAA 59.107 33.333 0.00 0.00 0.00 1.90
46 47 7.410174 AGACCTAAATCCATCCACAAAACATA 58.590 34.615 0.00 0.00 0.00 2.29
47 48 6.256053 AGACCTAAATCCATCCACAAAACAT 58.744 36.000 0.00 0.00 0.00 2.71
48 49 5.640147 AGACCTAAATCCATCCACAAAACA 58.360 37.500 0.00 0.00 0.00 2.83
49 50 6.434340 AGAAGACCTAAATCCATCCACAAAAC 59.566 38.462 0.00 0.00 0.00 2.43
50 51 6.434028 CAGAAGACCTAAATCCATCCACAAAA 59.566 38.462 0.00 0.00 0.00 2.44
51 52 5.945784 CAGAAGACCTAAATCCATCCACAAA 59.054 40.000 0.00 0.00 0.00 2.83
52 53 5.500234 CAGAAGACCTAAATCCATCCACAA 58.500 41.667 0.00 0.00 0.00 3.33
53 54 4.080356 CCAGAAGACCTAAATCCATCCACA 60.080 45.833 0.00 0.00 0.00 4.17
54 55 4.080299 ACCAGAAGACCTAAATCCATCCAC 60.080 45.833 0.00 0.00 0.00 4.02
55 56 4.111577 ACCAGAAGACCTAAATCCATCCA 58.888 43.478 0.00 0.00 0.00 3.41
56 57 4.779993 ACCAGAAGACCTAAATCCATCC 57.220 45.455 0.00 0.00 0.00 3.51
57 58 6.159988 CGATACCAGAAGACCTAAATCCATC 58.840 44.000 0.00 0.00 0.00 3.51
58 59 5.602978 ACGATACCAGAAGACCTAAATCCAT 59.397 40.000 0.00 0.00 0.00 3.41
59 60 4.960469 ACGATACCAGAAGACCTAAATCCA 59.040 41.667 0.00 0.00 0.00 3.41
60 61 5.068723 TCACGATACCAGAAGACCTAAATCC 59.931 44.000 0.00 0.00 0.00 3.01
61 62 6.145338 TCACGATACCAGAAGACCTAAATC 57.855 41.667 0.00 0.00 0.00 2.17
62 63 6.098409 ACATCACGATACCAGAAGACCTAAAT 59.902 38.462 0.00 0.00 0.00 1.40
63 64 5.421056 ACATCACGATACCAGAAGACCTAAA 59.579 40.000 0.00 0.00 0.00 1.85
64 65 4.954202 ACATCACGATACCAGAAGACCTAA 59.046 41.667 0.00 0.00 0.00 2.69
65 66 4.533815 ACATCACGATACCAGAAGACCTA 58.466 43.478 0.00 0.00 0.00 3.08
66 67 3.366396 ACATCACGATACCAGAAGACCT 58.634 45.455 0.00 0.00 0.00 3.85
67 68 3.802948 ACATCACGATACCAGAAGACC 57.197 47.619 0.00 0.00 0.00 3.85
68 69 6.421202 GGAAATACATCACGATACCAGAAGAC 59.579 42.308 0.00 0.00 0.00 3.01
69 70 6.097696 TGGAAATACATCACGATACCAGAAGA 59.902 38.462 0.00 0.00 0.00 2.87
70 71 6.280643 TGGAAATACATCACGATACCAGAAG 58.719 40.000 0.00 0.00 0.00 2.85
71 72 6.228616 TGGAAATACATCACGATACCAGAA 57.771 37.500 0.00 0.00 0.00 3.02
72 73 5.862678 TGGAAATACATCACGATACCAGA 57.137 39.130 0.00 0.00 0.00 3.86
73 74 6.712241 GATGGAAATACATCACGATACCAG 57.288 41.667 0.62 0.00 45.11 4.00
83 84 8.821894 GTCAAGTCTTACTGATGGAAATACATC 58.178 37.037 0.00 0.00 45.79 3.06
84 85 8.321353 TGTCAAGTCTTACTGATGGAAATACAT 58.679 33.333 0.00 0.00 0.00 2.29
85 86 7.676004 TGTCAAGTCTTACTGATGGAAATACA 58.324 34.615 0.00 0.00 0.00 2.29
86 87 7.278868 CCTGTCAAGTCTTACTGATGGAAATAC 59.721 40.741 0.00 0.00 0.00 1.89
87 88 7.331026 CCTGTCAAGTCTTACTGATGGAAATA 58.669 38.462 0.00 0.00 0.00 1.40
88 89 6.176183 CCTGTCAAGTCTTACTGATGGAAAT 58.824 40.000 0.00 0.00 0.00 2.17
89 90 5.551233 CCTGTCAAGTCTTACTGATGGAAA 58.449 41.667 0.00 0.00 0.00 3.13
90 91 4.563580 GCCTGTCAAGTCTTACTGATGGAA 60.564 45.833 0.00 0.00 0.00 3.53
91 92 3.055819 GCCTGTCAAGTCTTACTGATGGA 60.056 47.826 0.00 0.00 0.00 3.41
92 93 3.265791 GCCTGTCAAGTCTTACTGATGG 58.734 50.000 0.00 0.00 0.00 3.51
93 94 2.926200 CGCCTGTCAAGTCTTACTGATG 59.074 50.000 0.00 0.00 0.00 3.07
94 95 2.675317 GCGCCTGTCAAGTCTTACTGAT 60.675 50.000 0.00 0.00 0.00 2.90
95 96 1.336887 GCGCCTGTCAAGTCTTACTGA 60.337 52.381 0.00 0.00 0.00 3.41
96 97 1.071605 GCGCCTGTCAAGTCTTACTG 58.928 55.000 0.00 0.00 0.00 2.74
97 98 0.969894 AGCGCCTGTCAAGTCTTACT 59.030 50.000 2.29 0.00 0.00 2.24
98 99 1.797025 AAGCGCCTGTCAAGTCTTAC 58.203 50.000 2.29 0.00 0.00 2.34
99 100 2.143122 CAAAGCGCCTGTCAAGTCTTA 58.857 47.619 2.29 0.00 0.00 2.10
100 101 0.947244 CAAAGCGCCTGTCAAGTCTT 59.053 50.000 2.29 0.00 0.00 3.01
101 102 0.886490 CCAAAGCGCCTGTCAAGTCT 60.886 55.000 2.29 0.00 0.00 3.24
102 103 1.576421 CCAAAGCGCCTGTCAAGTC 59.424 57.895 2.29 0.00 0.00 3.01
103 104 2.555547 GCCAAAGCGCCTGTCAAGT 61.556 57.895 2.29 0.00 0.00 3.16
104 105 0.955428 TAGCCAAAGCGCCTGTCAAG 60.955 55.000 2.29 0.00 46.67 3.02
105 106 0.955428 CTAGCCAAAGCGCCTGTCAA 60.955 55.000 2.29 0.00 46.67 3.18
106 107 1.375908 CTAGCCAAAGCGCCTGTCA 60.376 57.895 2.29 0.00 46.67 3.58
107 108 0.108329 TACTAGCCAAAGCGCCTGTC 60.108 55.000 2.29 0.00 46.67 3.51
108 109 0.108138 CTACTAGCCAAAGCGCCTGT 60.108 55.000 2.29 0.00 46.67 4.00
109 110 1.432270 GCTACTAGCCAAAGCGCCTG 61.432 60.000 2.29 0.97 46.67 4.85
110 111 1.153349 GCTACTAGCCAAAGCGCCT 60.153 57.895 2.29 0.00 46.67 5.52
111 112 1.449601 TGCTACTAGCCAAAGCGCC 60.450 57.895 2.29 0.00 46.67 6.53
112 113 0.741221 AGTGCTACTAGCCAAAGCGC 60.741 55.000 0.00 0.00 46.67 5.92
113 114 1.281899 GAGTGCTACTAGCCAAAGCG 58.718 55.000 5.58 0.00 46.67 4.68
114 115 1.281899 CGAGTGCTACTAGCCAAAGC 58.718 55.000 5.58 0.00 41.51 3.51
115 116 1.281899 GCGAGTGCTACTAGCCAAAG 58.718 55.000 5.58 0.00 40.33 2.77
116 117 0.606096 TGCGAGTGCTACTAGCCAAA 59.394 50.000 14.98 0.00 44.65 3.28
117 118 0.108804 GTGCGAGTGCTACTAGCCAA 60.109 55.000 14.98 0.41 44.65 4.52
118 119 1.248101 TGTGCGAGTGCTACTAGCCA 61.248 55.000 14.98 11.06 44.65 4.75
119 120 0.108804 TTGTGCGAGTGCTACTAGCC 60.109 55.000 14.98 9.34 44.65 3.93
120 121 1.710013 TTTGTGCGAGTGCTACTAGC 58.290 50.000 12.17 12.17 45.33 3.42
121 122 3.487574 GCTATTTGTGCGAGTGCTACTAG 59.512 47.826 0.00 0.00 43.34 2.57
122 123 3.444916 GCTATTTGTGCGAGTGCTACTA 58.555 45.455 0.00 0.00 43.34 1.82
123 124 2.271800 GCTATTTGTGCGAGTGCTACT 58.728 47.619 0.00 0.00 43.34 2.57
124 125 2.721129 GCTATTTGTGCGAGTGCTAC 57.279 50.000 0.00 0.00 43.34 3.58
134 135 1.058748 CGACCGCACGCTATTTGTG 59.941 57.895 0.00 0.00 40.32 3.33
135 136 3.470267 CGACCGCACGCTATTTGT 58.530 55.556 0.00 0.00 0.00 2.83
146 147 2.799540 GATTCGAACCTGCGACCGC 61.800 63.158 0.00 7.53 40.42 5.68
147 148 2.165301 GGATTCGAACCTGCGACCG 61.165 63.158 0.00 0.00 40.42 4.79
148 149 1.814169 GGGATTCGAACCTGCGACC 60.814 63.158 0.00 0.00 40.42 4.79
149 150 2.165301 CGGGATTCGAACCTGCGAC 61.165 63.158 0.00 0.00 40.42 5.19
150 151 2.183300 CGGGATTCGAACCTGCGA 59.817 61.111 0.00 0.00 42.43 5.10
151 152 2.890474 CCGGGATTCGAACCTGCG 60.890 66.667 15.95 11.66 42.43 5.18
152 153 3.202706 GCCGGGATTCGAACCTGC 61.203 66.667 15.95 11.29 42.43 4.85
153 154 1.376683 TTGCCGGGATTCGAACCTG 60.377 57.895 2.18 14.95 42.43 4.00
154 155 1.376812 GTTGCCGGGATTCGAACCT 60.377 57.895 2.18 0.00 42.43 3.50
155 156 1.673009 TGTTGCCGGGATTCGAACC 60.673 57.895 2.18 4.00 42.43 3.62
156 157 0.953960 AGTGTTGCCGGGATTCGAAC 60.954 55.000 2.18 0.00 42.43 3.95
157 158 0.672401 GAGTGTTGCCGGGATTCGAA 60.672 55.000 2.18 0.00 42.43 3.71
158 159 1.079405 GAGTGTTGCCGGGATTCGA 60.079 57.895 2.18 0.00 42.43 3.71
159 160 1.079127 AGAGTGTTGCCGGGATTCG 60.079 57.895 2.18 0.00 38.88 3.34
160 161 0.744771 GGAGAGTGTTGCCGGGATTC 60.745 60.000 2.18 0.00 0.00 2.52
161 162 1.201429 AGGAGAGTGTTGCCGGGATT 61.201 55.000 2.18 0.00 0.00 3.01
162 163 1.201429 AAGGAGAGTGTTGCCGGGAT 61.201 55.000 2.18 0.00 0.00 3.85
163 164 1.415672 AAAGGAGAGTGTTGCCGGGA 61.416 55.000 2.18 0.00 0.00 5.14
164 165 0.537371 AAAAGGAGAGTGTTGCCGGG 60.537 55.000 2.18 0.00 0.00 5.73
165 166 1.266989 GAAAAAGGAGAGTGTTGCCGG 59.733 52.381 0.00 0.00 0.00 6.13
166 167 1.069906 CGAAAAAGGAGAGTGTTGCCG 60.070 52.381 0.00 0.00 0.00 5.69
167 168 1.335051 GCGAAAAAGGAGAGTGTTGCC 60.335 52.381 0.00 0.00 0.00 4.52
168 169 1.660333 CGCGAAAAAGGAGAGTGTTGC 60.660 52.381 0.00 0.00 0.00 4.17
169 170 1.597663 ACGCGAAAAAGGAGAGTGTTG 59.402 47.619 15.93 0.00 0.00 3.33
170 171 1.949465 ACGCGAAAAAGGAGAGTGTT 58.051 45.000 15.93 0.00 0.00 3.32
171 172 1.597663 CAACGCGAAAAAGGAGAGTGT 59.402 47.619 15.93 0.00 0.00 3.55
172 173 1.660333 GCAACGCGAAAAAGGAGAGTG 60.660 52.381 15.93 0.00 0.00 3.51
173 174 0.586802 GCAACGCGAAAAAGGAGAGT 59.413 50.000 15.93 0.00 0.00 3.24
174 175 0.868406 AGCAACGCGAAAAAGGAGAG 59.132 50.000 15.93 0.00 0.00 3.20
175 176 0.865769 GAGCAACGCGAAAAAGGAGA 59.134 50.000 15.93 0.00 0.00 3.71
176 177 0.110192 GGAGCAACGCGAAAAAGGAG 60.110 55.000 15.93 0.00 0.00 3.69
177 178 1.512156 GGGAGCAACGCGAAAAAGGA 61.512 55.000 15.93 0.00 0.00 3.36
178 179 1.081442 GGGAGCAACGCGAAAAAGG 60.081 57.895 15.93 0.00 0.00 3.11
179 180 0.110192 GAGGGAGCAACGCGAAAAAG 60.110 55.000 15.93 0.00 36.53 2.27
180 181 0.816018 TGAGGGAGCAACGCGAAAAA 60.816 50.000 15.93 0.00 36.53 1.94
181 182 0.816018 TTGAGGGAGCAACGCGAAAA 60.816 50.000 15.93 0.00 36.53 2.29
182 183 0.605319 ATTGAGGGAGCAACGCGAAA 60.605 50.000 15.93 0.00 36.53 3.46
183 184 1.003839 ATTGAGGGAGCAACGCGAA 60.004 52.632 15.93 0.00 36.53 4.70
184 185 1.447838 GATTGAGGGAGCAACGCGA 60.448 57.895 15.93 0.00 36.53 5.87
185 186 1.021390 AAGATTGAGGGAGCAACGCG 61.021 55.000 3.53 3.53 36.53 6.01
186 187 0.449388 CAAGATTGAGGGAGCAACGC 59.551 55.000 0.00 0.00 0.00 4.84
187 188 1.089920 CCAAGATTGAGGGAGCAACG 58.910 55.000 0.00 0.00 0.00 4.10
188 189 2.363683 CTCCAAGATTGAGGGAGCAAC 58.636 52.381 0.00 0.00 41.53 4.17
189 190 2.795231 CTCCAAGATTGAGGGAGCAA 57.205 50.000 0.00 0.00 41.53 3.91
193 194 3.024547 CGTCTACTCCAAGATTGAGGGA 58.975 50.000 0.00 0.00 0.00 4.20
194 195 3.024547 TCGTCTACTCCAAGATTGAGGG 58.975 50.000 0.00 0.00 0.00 4.30
195 196 3.948473 TCTCGTCTACTCCAAGATTGAGG 59.052 47.826 0.00 0.00 34.30 3.86
196 197 4.396478 TGTCTCGTCTACTCCAAGATTGAG 59.604 45.833 0.00 0.00 34.58 3.02
197 198 4.332828 TGTCTCGTCTACTCCAAGATTGA 58.667 43.478 0.00 0.00 0.00 2.57
198 199 4.703645 TGTCTCGTCTACTCCAAGATTG 57.296 45.455 0.00 0.00 0.00 2.67
199 200 5.886474 TGTATGTCTCGTCTACTCCAAGATT 59.114 40.000 0.00 0.00 0.00 2.40
200 201 5.437946 TGTATGTCTCGTCTACTCCAAGAT 58.562 41.667 0.00 0.00 0.00 2.40
201 202 4.840271 TGTATGTCTCGTCTACTCCAAGA 58.160 43.478 0.00 0.00 0.00 3.02
202 203 5.562506 TTGTATGTCTCGTCTACTCCAAG 57.437 43.478 0.00 0.00 0.00 3.61
203 204 6.525578 AATTGTATGTCTCGTCTACTCCAA 57.474 37.500 0.00 0.00 0.00 3.53
204 205 5.220796 CGAATTGTATGTCTCGTCTACTCCA 60.221 44.000 0.00 0.00 0.00 3.86
205 206 5.206299 CGAATTGTATGTCTCGTCTACTCC 58.794 45.833 0.00 0.00 0.00 3.85
206 207 5.808403 ACGAATTGTATGTCTCGTCTACTC 58.192 41.667 0.00 0.00 40.29 2.59
207 208 5.814764 ACGAATTGTATGTCTCGTCTACT 57.185 39.130 0.00 0.00 40.29 2.57
212 213 2.421073 TCCGACGAATTGTATGTCTCGT 59.579 45.455 0.00 0.00 46.49 4.18
213 214 2.782192 GTCCGACGAATTGTATGTCTCG 59.218 50.000 0.00 0.00 37.33 4.04
214 215 3.114065 GGTCCGACGAATTGTATGTCTC 58.886 50.000 0.00 0.00 0.00 3.36
215 216 2.494471 TGGTCCGACGAATTGTATGTCT 59.506 45.455 0.00 0.00 0.00 3.41
216 217 2.883574 TGGTCCGACGAATTGTATGTC 58.116 47.619 0.00 0.00 0.00 3.06
217 218 3.322211 TTGGTCCGACGAATTGTATGT 57.678 42.857 0.00 0.00 0.00 2.29
218 219 4.875544 ATTTGGTCCGACGAATTGTATG 57.124 40.909 0.00 0.00 0.00 2.39
219 220 4.510340 GCTATTTGGTCCGACGAATTGTAT 59.490 41.667 0.00 0.00 0.00 2.29
220 221 3.866910 GCTATTTGGTCCGACGAATTGTA 59.133 43.478 0.00 0.00 0.00 2.41
221 222 2.676342 GCTATTTGGTCCGACGAATTGT 59.324 45.455 0.00 0.00 0.00 2.71
222 223 2.675844 TGCTATTTGGTCCGACGAATTG 59.324 45.455 0.00 1.30 0.00 2.32
223 224 2.980568 TGCTATTTGGTCCGACGAATT 58.019 42.857 0.00 0.00 0.00 2.17
224 225 2.684001 TGCTATTTGGTCCGACGAAT 57.316 45.000 0.00 1.22 0.00 3.34
225 226 2.684001 ATGCTATTTGGTCCGACGAA 57.316 45.000 0.00 0.00 0.00 3.85
226 227 3.804786 TTATGCTATTTGGTCCGACGA 57.195 42.857 0.00 0.00 0.00 4.20
227 228 4.495184 GGTTTTATGCTATTTGGTCCGACG 60.495 45.833 0.00 0.00 0.00 5.12
228 229 4.396790 TGGTTTTATGCTATTTGGTCCGAC 59.603 41.667 0.00 0.00 0.00 4.79
229 230 4.396790 GTGGTTTTATGCTATTTGGTCCGA 59.603 41.667 0.00 0.00 0.00 4.55
230 231 4.439563 GGTGGTTTTATGCTATTTGGTCCG 60.440 45.833 0.00 0.00 0.00 4.79
231 232 4.464597 TGGTGGTTTTATGCTATTTGGTCC 59.535 41.667 0.00 0.00 0.00 4.46
232 233 5.185056 AGTGGTGGTTTTATGCTATTTGGTC 59.815 40.000 0.00 0.00 0.00 4.02
233 234 5.083821 AGTGGTGGTTTTATGCTATTTGGT 58.916 37.500 0.00 0.00 0.00 3.67
234 235 5.659440 AGTGGTGGTTTTATGCTATTTGG 57.341 39.130 0.00 0.00 0.00 3.28
235 236 7.961325 AAAAGTGGTGGTTTTATGCTATTTG 57.039 32.000 0.00 0.00 0.00 2.32
1035 1038 3.335579 CCTTCCAGTTAAGGTTCCTTCG 58.664 50.000 7.41 0.00 41.06 3.79
1471 1474 5.087391 TCAGTAACACCACAGTTAACACA 57.913 39.130 8.61 0.00 35.88 3.72
1722 1725 0.979665 CCTCCTCAACTGCCTTCTGA 59.020 55.000 0.00 0.00 0.00 3.27
1812 1815 1.109323 ACCTGTGTTCCTTGGCAAGC 61.109 55.000 21.77 8.95 0.00 4.01
1827 1830 2.161855 TGGCTCTGTAAAATGCACCTG 58.838 47.619 0.00 0.00 0.00 4.00
1865 1868 2.039879 TCCTTCTTTGCCTTCCTGGTAC 59.960 50.000 0.00 0.00 38.35 3.34
1900 1907 6.426633 GCCTTCTCTATCTTAAGCAAATCTCC 59.573 42.308 0.00 0.00 0.00 3.71
2108 2115 9.142014 ACATAGACTAGATTAGCTTCACATTCT 57.858 33.333 0.00 0.00 0.00 2.40
2265 2272 5.683876 AAAGACACATAGCATACTCCAGT 57.316 39.130 0.00 0.00 0.00 4.00
2308 2315 5.293569 CCCAGGTAGAAAGCAGTAATAAACG 59.706 44.000 0.00 0.00 0.00 3.60
2317 2324 1.815003 CAAAGCCCAGGTAGAAAGCAG 59.185 52.381 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.