AutoCloner

Multiple sequence alignment - TraesCS4D01G247800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G247800	chr4D	100.000	3035	0	0	1	3035	416692726	416695760	0.000000e+00	5605.0
1	TraesCS4D01G247800	chr4D	98.813	1516	16	2	1	1514	416641397	416642912	0.000000e+00	2699.0
2	TraesCS4D01G247800	chr4D	90.556	900	62	8	10	891	416576177	416577071	0.000000e+00	1170.0
3	TraesCS4D01G247800	chr4D	94.762	630	33	0	1476	2105	416146214	416145585	0.000000e+00	981.0
4	TraesCS4D01G247800	chr4D	93.972	647	35	2	1458	2102	416578100	416578744	0.000000e+00	976.0
5	TraesCS4D01G247800	chr4D	92.742	620	39	3	1476	2091	416429290	416428673	0.000000e+00	891.0
6	TraesCS4D01G247800	chr4D	89.037	602	44	11	910	1494	416146687	416146091	0.000000e+00	726.0
7	TraesCS4D01G247800	chr4D	88.945	597	49	12	910	1494	416429758	416429167	0.000000e+00	721.0
8	TraesCS4D01G247800	chr4D	92.161	472	14	5	441	889	416147764	416147293	0.000000e+00	645.0
9	TraesCS4D01G247800	chr4D	91.304	460	35	4	1496	1954	416422605	416422150	9.240000e-175	623.0
10	TraesCS4D01G247800	chr4D	88.863	431	35	9	1092	1513	416577813	416578239	4.490000e-143	518.0
11	TraesCS4D01G247800	chr4D	86.453	406	45	8	10	410	416148082	416147682	1.290000e-118	436.0
12	TraesCS4D01G247800	chr4D	94.245	139	8	0	910	1048	416577675	416577813	2.370000e-51	213.0
13	TraesCS4D01G247800	chr4D	91.549	142	8	4	2253	2392	416643910	416644049	3.090000e-45	193.0
14	TraesCS4D01G247800	chr4D	90.845	142	8	5	2253	2392	416578991	416579129	5.170000e-43	185.0
15	TraesCS4D01G247800	chr4D	93.333	45	2	1	2199	2243	416145430	416145473	7.020000e-07	65.8
16	TraesCS4D01G247800	chr4D	91.667	48	3	1	2199	2246	416578901	416578855	7.020000e-07	65.8
17	TraesCS4D01G247800	chr4D	91.667	48	3	1	2199	2246	416643822	416643776	7.020000e-07	65.8
18	TraesCS4D01G247800	chr4A	91.704	1109	72	11	1006	2101	47709029	47710130	0.000000e+00	1520.0
19	TraesCS4D01G247800	chr4A	94.660	618	33	0	1488	2105	47650126	47650743	0.000000e+00	959.0
20	TraesCS4D01G247800	chr4A	93.323	629	42	0	1474	2102	47455629	47455001	0.000000e+00	929.0
21	TraesCS4D01G247800	chr4A	88.704	602	53	9	905	1494	47456102	47455504	0.000000e+00	721.0
22	TraesCS4D01G247800	chr4A	86.936	643	56	13	960	1590	47736064	47736690	0.000000e+00	697.0
23	TraesCS4D01G247800	chr4A	90.889	461	27	4	438	891	47707949	47708401	3.350000e-169	604.0
24	TraesCS4D01G247800	chr4A	85.821	402	47	7	18	411	47707639	47708038	4.680000e-113	418.0
25	TraesCS4D01G247800	chr4A	92.042	289	20	1	2713	3001	47454158	47453873	1.310000e-108	403.0
26	TraesCS4D01G247800	chr4A	89.883	257	12	10	2435	2680	47454483	47454230	4.880000e-83	318.0
27	TraesCS4D01G247800	chr4A	90.000	190	17	2	2253	2441	47454746	47454558	8.410000e-61	244.0
28	TraesCS4D01G247800	chr4A	86.310	168	18	4	1373	1536	47709464	47709630	8.650000e-41	178.0
29	TraesCS4D01G247800	chr4B	88.914	902	60	11	18	891	513449087	513449976	0.000000e+00	1075.0
30	TraesCS4D01G247800	chr4B	91.543	674	49	6	1432	2102	513451044	513451712	0.000000e+00	922.0
31	TraesCS4D01G247800	chr4B	92.259	633	40	6	1474	2105	512797524	512796900	0.000000e+00	889.0
32	TraesCS4D01G247800	chr4B	91.837	637	40	3	906	1536	513450578	513451208	0.000000e+00	878.0
33	TraesCS4D01G247800	chr4B	92.063	567	38	4	930	1494	512797963	512797402	0.000000e+00	791.0
34	TraesCS4D01G247800	chr4B	88.784	633	30	14	2437	3035	513452210	513452835	0.000000e+00	737.0
35	TraesCS4D01G247800	chr4B	84.628	631	60	17	910	1536	513079433	513078836	7.240000e-166	593.0
36	TraesCS4D01G247800	chr4B	89.349	169	14	4	2275	2441	513451967	513452133	3.070000e-50	209.0
37	TraesCS4D01G247800	chr4B	97.436	39	0	1	2206	2243	512796748	512796786	7.020000e-07	65.8
38	TraesCS4D01G247800	chr4B	88.235	51	2	2	2199	2246	513451869	513451820	1.180000e-04	58.4
39	TraesCS4D01G247800	chr7A	88.789	446	41	3	452	891	646297540	646297982	3.440000e-149	538.0
40	TraesCS4D01G247800	chr6A	90.816	392	31	1	505	891	26095172	26094781	1.250000e-143	520.0
41	TraesCS4D01G247800	chr6A	89.286	392	35	2	505	891	26028776	26028387	4.550000e-133	484.0
42	TraesCS4D01G247800	chr3A	89.501	381	31	2	516	891	434195658	434195282	9.850000e-130	473.0
43	TraesCS4D01G247800	chr3A	78.610	187	38	2	100	286	490788393	490788209	4.110000e-24	122.0
44	TraesCS4D01G247800	chr5B	92.727	55	4	0	220	274	15835706	15835760	2.510000e-11	80.5
45	TraesCS4D01G247800	chr1B	89.831	59	5	1	2753	2810	17543554	17543496	1.170000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G247800	chr4D	416692726	416695760	3034	False	5605.0	5605	100.00000	1	3035	1	chr4D.!!$F2	3034
1	TraesCS4D01G247800	chr4D	416641397	416644049	2652	False	1446.0	2699	95.18100	1	2392	2	chr4D.!!$F4	2391
2	TraesCS4D01G247800	chr4D	416428673	416429758	1085	True	806.0	891	90.84350	910	2091	2	chr4D.!!$R5	1181
3	TraesCS4D01G247800	chr4D	416145585	416148082	2497	True	697.0	981	90.60325	10	2105	4	chr4D.!!$R4	2095
4	TraesCS4D01G247800	chr4D	416576177	416579129	2952	False	612.4	1170	91.69620	10	2392	5	chr4D.!!$F3	2382
5	TraesCS4D01G247800	chr4A	47650126	47650743	617	False	959.0	959	94.66000	1488	2105	1	chr4A.!!$F1	617
6	TraesCS4D01G247800	chr4A	47736064	47736690	626	False	697.0	697	86.93600	960	1590	1	chr4A.!!$F2	630
7	TraesCS4D01G247800	chr4A	47707639	47710130	2491	False	680.0	1520	88.68100	18	2101	4	chr4A.!!$F3	2083
8	TraesCS4D01G247800	chr4A	47453873	47456102	2229	True	523.0	929	90.79040	905	3001	5	chr4A.!!$R1	2096
9	TraesCS4D01G247800	chr4B	512796900	512797963	1063	True	840.0	889	92.16100	930	2105	2	chr4B.!!$R3	1175
10	TraesCS4D01G247800	chr4B	513449087	513452835	3748	False	764.2	1075	90.08540	18	3035	5	chr4B.!!$F2	3017
11	TraesCS4D01G247800	chr4B	513078836	513079433	597	True	593.0	593	84.62800	910	1536	1	chr4B.!!$R1	626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
172	174	1.337167	GCAAGGCACCATTTGACCTTC	60.337	52.381	0.00	0.0	38.77	3.46	F
1464	2351	0.030908	CGAGCTCCGAATACACTCCC	59.969	60.000	8.47	0.0	41.76	4.30	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1641	2837	1.372582	GAGACGGCATCATGAAAGCA	58.627	50.0	20.74	0.0	0.00	3.91	R
2431	3741	0.249447	TGAGTGTCTCAACTGGCACG	60.249	55.0	0.00	0.0	37.57	5.34	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
172	174	1.337167	GCAAGGCACCATTTGACCTTC	60.337	52.381	0.00	0.00	38.77	3.46
550	696	5.418209	GGGAACTACACTACACTACATGTCT	59.582	44.000	0.00	0.00	42.09	3.41
581	727	5.334421	AGAAGAGTGGGAACTACAGTACAT	58.666	41.667	0.00	0.00	0.00	2.29
828	994	7.700656	CACAAGAACTAAACTTTGGTTAACTGG	59.299	37.037	5.42	0.00	34.29	4.00
1019	1817	2.483106	CCATGATAGAGCTCGGCATTTG	59.517	50.000	8.37	3.56	0.00	2.32
1430	2317	1.380112	ACTACACTCCCTCGAGCCC	60.380	63.158	6.99	0.00	40.03	5.19
1461	2348	1.437986	GGCGAGCTCCGAATACACT	59.562	57.895	8.47	0.00	41.76	3.55
1464	2351	0.030908	CGAGCTCCGAATACACTCCC	59.969	60.000	8.47	0.00	41.76	4.30
1698	2894	1.228769	AGACTACACGCCCCTGACA	60.229	57.895	0.00	0.00	0.00	3.58
1734	2930	4.796290	GCTGCTTCATCGCCTTACTATACA	60.796	45.833	0.00	0.00	0.00	2.29
2115	3352	3.066369	TGCTATGACTCACGAATCGAC	57.934	47.619	10.55	0.00	0.00	4.20
2130	3368	7.903431	TCACGAATCGACGAATATATCTGTATG	59.097	37.037	10.55	0.00	37.03	2.39
2144	3382	5.886960	ATCTGTATGGAGCTTTTGTTGAC	57.113	39.130	0.00	0.00	0.00	3.18
2145	3383	4.973168	TCTGTATGGAGCTTTTGTTGACT	58.027	39.130	0.00	0.00	0.00	3.41
2159	3397	5.940192	TTGTTGACTATGCGAGATTGTTT	57.060	34.783	0.00	0.00	0.00	2.83
2175	3413	7.269937	CGAGATTGTTTTCTGTTATTGCTTCTG	59.730	37.037	0.00	0.00	0.00	3.02
2176	3414	7.945134	AGATTGTTTTCTGTTATTGCTTCTGT	58.055	30.769	0.00	0.00	0.00	3.41
2181	3419	8.868916	TGTTTTCTGTTATTGCTTCTGTTTTTC	58.131	29.630	0.00	0.00	0.00	2.29
2183	3421	9.651913	TTTTCTGTTATTGCTTCTGTTTTTCTT	57.348	25.926	0.00	0.00	0.00	2.52
2187	3425	9.906111	CTGTTATTGCTTCTGTTTTTCTTTTTC	57.094	29.630	0.00	0.00	0.00	2.29
2197	3435	3.934457	TTTTCTTTTTCGGCTGGATCC	57.066	42.857	4.20	4.20	0.00	3.36
2210	3478	2.288640	GCTGGATCCATTGCCTATTTGC	60.289	50.000	16.63	7.24	0.00	3.68
2211	3479	2.960384	CTGGATCCATTGCCTATTTGCA	59.040	45.455	16.63	0.00	40.07	4.08
2213	3481	3.575256	TGGATCCATTGCCTATTTGCATC	59.425	43.478	11.44	0.00	41.70	3.91
2219	3487	4.473199	CATTGCCTATTTGCATCGATGAG	58.527	43.478	29.20	15.86	41.70	2.90
2222	3490	4.198530	TGCCTATTTGCATCGATGAGAAA	58.801	39.130	29.20	23.39	36.04	2.52
2225	3493	5.449041	GCCTATTTGCATCGATGAGAAACAA	60.449	40.000	29.20	18.58	0.00	2.83
2226	3494	6.554419	CCTATTTGCATCGATGAGAAACAAA	58.446	36.000	29.20	24.88	39.99	2.83
2227	3495	6.690098	CCTATTTGCATCGATGAGAAACAAAG	59.310	38.462	29.20	19.53	39.46	2.77
2231	3499	5.181009	TGCATCGATGAGAAACAAAGAGAT	58.819	37.500	29.20	0.00	0.00	2.75
2232	3500	5.292834	TGCATCGATGAGAAACAAAGAGATC	59.707	40.000	29.20	5.64	0.00	2.75
2234	3502	5.405935	TCGATGAGAAACAAAGAGATCCA	57.594	39.130	0.00	0.00	0.00	3.41
2235	3503	5.414360	TCGATGAGAAACAAAGAGATCCAG	58.586	41.667	0.00	0.00	0.00	3.86
2236	3504	4.033817	CGATGAGAAACAAAGAGATCCAGC	59.966	45.833	0.00	0.00	0.00	4.85
2237	3505	3.679389	TGAGAAACAAAGAGATCCAGCC	58.321	45.455	0.00	0.00	0.00	4.85
2238	3506	3.072915	TGAGAAACAAAGAGATCCAGCCA	59.927	43.478	0.00	0.00	0.00	4.75
2241	3509	4.895297	AGAAACAAAGAGATCCAGCCAAAA	59.105	37.500	0.00	0.00	0.00	2.44
2244	3512	4.410099	ACAAAGAGATCCAGCCAAAATGA	58.590	39.130	0.00	0.00	0.00	2.57
2245	3513	4.834496	ACAAAGAGATCCAGCCAAAATGAA	59.166	37.500	0.00	0.00	0.00	2.57
2246	3514	5.482878	ACAAAGAGATCCAGCCAAAATGAAT	59.517	36.000	0.00	0.00	0.00	2.57
2296	3605	3.490078	GGTTGTCGCCTGAACATTTTTCA	60.490	43.478	0.00	0.00	0.00	2.69
2344	3653	4.967437	CAGTCTGCTGCTCAAATAGTTTC	58.033	43.478	0.00	0.00	35.77	2.78
2351	3661	7.013655	TCTGCTGCTCAAATAGTTTCTTTTCTT	59.986	33.333	0.00	0.00	0.00	2.52
2354	3664	8.507249	GCTGCTCAAATAGTTTCTTTTCTTCTA	58.493	33.333	0.00	0.00	0.00	2.10
2367	3677	9.520515	TTTCTTTTCTTCTATTTACATGGCTCT	57.479	29.630	0.00	0.00	0.00	4.09
2431	3741	4.816786	AAATTGTGCTTGTTTGGAATGC	57.183	36.364	0.00	0.00	0.00	3.56
2543	3941	3.698029	ATGATGTGCGATTTTAGGTGC	57.302	42.857	0.00	0.00	0.00	5.01
2618	4019	6.404712	ACTGTACTATTTTTCAGCTTACGC	57.595	37.500	0.00	0.00	0.00	4.42
2625	4026	4.560136	TTTTTCAGCTTACGCATCAACA	57.440	36.364	0.00	0.00	39.10	3.33
2630	4031	4.722194	TCAGCTTACGCATCAACATTTTC	58.278	39.130	0.00	0.00	39.10	2.29
2631	4033	4.215185	TCAGCTTACGCATCAACATTTTCA	59.785	37.500	0.00	0.00	39.10	2.69
2670	4072	2.126031	GTCGTCACGAAGGAGGGC	60.126	66.667	0.00	0.00	37.72	5.19
2688	4106	2.190981	GGCGATGTTGGTACTTACTCG	58.809	52.381	0.00	4.63	0.00	4.18
2724	4165	5.801350	ATACGGTTCAGTTGACATTGATG	57.199	39.130	0.00	0.00	0.00	3.07
2738	4179	4.914983	ACATTGATGGTGAGATGAACACT	58.085	39.130	0.00	0.00	38.20	3.55
2899	4340	8.591940	TGTTTCATCCATGATTGGTTTTATCAA	58.408	29.630	0.00	0.00	44.06	2.57
2913	4354	6.495181	TGGTTTTATCAAGTGCTGGGATTTTA	59.505	34.615	0.00	0.00	0.00	1.52
2954	4395	0.519175	CACTGCGCATTAGTGAACGC	60.519	55.000	20.19	0.00	46.52	4.84
2988	4429	3.570125	CCGTTCCTGCACTCTCATATCTA	59.430	47.826	0.00	0.00	0.00	1.98

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	49	1.168714	GACAGCTGGGTCATTTGTCC	58.831	55.000	19.93	0.00	37.73	4.02
172	174	0.965866	TACTCACCTCCGCCTCACAG	60.966	60.000	0.00	0.00	0.00	3.66
550	696	5.888982	AGTTCCCACTCTTCTCAAGTTTA	57.111	39.130	0.00	0.00	0.00	2.01
581	727	2.546899	AGTAGGGACCATGTAGTGCAA	58.453	47.619	0.00	0.00	0.00	4.08
622	788	3.455910	TGCTATACTTTGACAGCCTGGAT	59.544	43.478	0.00	0.00	32.97	3.41
828	994	6.694447	TGGACACCTCAGTAGTTAATACAAC	58.306	40.000	0.00	0.00	36.79	3.32
1019	1817	1.437986	CCGTCCAGAGTCGGATTCC	59.562	63.158	6.93	0.00	46.11	3.01
1461	2348	3.414193	TAGTCCGGGCTCGAGGGA	61.414	66.667	14.54	9.75	39.00	4.20
1464	2351	1.716826	GAGTGTAGTCCGGGCTCGAG	61.717	65.000	14.54	8.45	39.00	4.04
1641	2837	1.372582	GAGACGGCATCATGAAAGCA	58.627	50.000	20.74	0.00	0.00	3.91
1722	2918	4.357996	GACTCAACGGTGTATAGTAAGGC	58.642	47.826	0.00	0.00	0.00	4.35
1851	3047	4.285851	CTGGAAGGAGTTGACGGC	57.714	61.111	0.00	0.00	0.00	5.68
1885	3081	3.112075	CGTGCTGGGCGTGTAGTG	61.112	66.667	0.00	0.00	0.00	2.74
2115	3352	8.539770	ACAAAAGCTCCATACAGATATATTCG	57.460	34.615	0.00	0.00	0.00	3.34
2130	3368	2.742053	TCGCATAGTCAACAAAAGCTCC	59.258	45.455	0.00	0.00	0.00	4.70
2144	3382	7.164826	GCAATAACAGAAAACAATCTCGCATAG	59.835	37.037	0.00	0.00	0.00	2.23
2145	3383	6.966632	GCAATAACAGAAAACAATCTCGCATA	59.033	34.615	0.00	0.00	0.00	3.14
2159	3397	9.651913	AAAAGAAAAACAGAAGCAATAACAGAA	57.348	25.926	0.00	0.00	0.00	3.02
2175	3413	3.987868	GGATCCAGCCGAAAAAGAAAAAC	59.012	43.478	6.95	0.00	0.00	2.43
2176	3414	3.639094	TGGATCCAGCCGAAAAAGAAAAA	59.361	39.130	11.44	0.00	0.00	1.94
2181	3419	2.736400	GCAATGGATCCAGCCGAAAAAG	60.736	50.000	21.33	3.10	0.00	2.27
2183	3421	0.817013	GCAATGGATCCAGCCGAAAA	59.183	50.000	21.33	0.00	0.00	2.29
2210	3478	5.814188	TGGATCTCTTTGTTTCTCATCGATG	59.186	40.000	19.61	19.61	0.00	3.84
2211	3479	5.982356	TGGATCTCTTTGTTTCTCATCGAT	58.018	37.500	0.00	0.00	0.00	3.59
2213	3481	4.033817	GCTGGATCTCTTTGTTTCTCATCG	59.966	45.833	0.00	0.00	0.00	3.84
2219	3487	4.853924	TTTGGCTGGATCTCTTTGTTTC	57.146	40.909	0.00	0.00	0.00	2.78
2222	3490	4.410099	TCATTTTGGCTGGATCTCTTTGT	58.590	39.130	0.00	0.00	0.00	2.83
2225	3493	5.105064	CCAATTCATTTTGGCTGGATCTCTT	60.105	40.000	0.00	0.00	39.76	2.85
2226	3494	4.404715	CCAATTCATTTTGGCTGGATCTCT	59.595	41.667	0.00	0.00	39.76	3.10
2227	3495	4.403432	TCCAATTCATTTTGGCTGGATCTC	59.597	41.667	0.00	0.00	44.85	2.75
2231	3499	3.237746	TGTCCAATTCATTTTGGCTGGA	58.762	40.909	0.00	0.00	44.85	3.86
2232	3500	3.681593	TGTCCAATTCATTTTGGCTGG	57.318	42.857	0.00	0.00	44.85	4.85
2234	3502	3.583966	ACCATGTCCAATTCATTTTGGCT	59.416	39.130	0.00	0.00	44.85	4.75
2235	3503	3.941573	ACCATGTCCAATTCATTTTGGC	58.058	40.909	0.00	0.00	44.85	4.52
2236	3504	4.154556	GCAACCATGTCCAATTCATTTTGG	59.845	41.667	0.00	0.00	46.28	3.28
2237	3505	4.998672	AGCAACCATGTCCAATTCATTTTG	59.001	37.500	0.00	0.00	0.00	2.44
2238	3506	5.012354	AGAGCAACCATGTCCAATTCATTTT	59.988	36.000	0.00	0.00	0.00	1.82
2241	3509	3.446161	CAGAGCAACCATGTCCAATTCAT	59.554	43.478	0.00	0.00	0.00	2.57
2244	3512	2.880443	ACAGAGCAACCATGTCCAATT	58.120	42.857	0.00	0.00	0.00	2.32
2245	3513	2.592102	ACAGAGCAACCATGTCCAAT	57.408	45.000	0.00	0.00	0.00	3.16
2246	3514	3.500448	TTACAGAGCAACCATGTCCAA	57.500	42.857	0.00	0.00	0.00	3.53
2249	3517	4.515191	TCAGTTTTACAGAGCAACCATGTC	59.485	41.667	0.00	0.00	0.00	3.06
2250	3518	4.460263	TCAGTTTTACAGAGCAACCATGT	58.540	39.130	0.00	0.00	0.00	3.21
2296	3605	1.160137	GGCGACATGCTCTGTTTTCT	58.840	50.000	0.00	0.00	45.43	2.52
2343	3652	8.321353	TCAGAGCCATGTAAATAGAAGAAAAGA	58.679	33.333	0.00	0.00	0.00	2.52
2344	3653	8.498054	TCAGAGCCATGTAAATAGAAGAAAAG	57.502	34.615	0.00	0.00	0.00	2.27
2351	3661	8.484214	AGAGTTATCAGAGCCATGTAAATAGA	57.516	34.615	0.00	0.00	0.00	1.98
2354	3664	6.769822	CCAAGAGTTATCAGAGCCATGTAAAT	59.230	38.462	0.00	0.00	0.00	1.40
2355	3665	6.070251	TCCAAGAGTTATCAGAGCCATGTAAA	60.070	38.462	0.00	0.00	0.00	2.01
2372	3682	8.716674	ATCCATTATTGCATAAATCCAAGAGT	57.283	30.769	0.00	0.00	0.00	3.24
2408	3718	5.580661	GCATTCCAAACAAGCACAATTTTT	58.419	33.333	0.00	0.00	0.00	1.94
2431	3741	0.249447	TGAGTGTCTCAACTGGCACG	60.249	55.000	0.00	0.00	37.57	5.34
2618	4019	4.624015	AGCACAAGGTGAAAATGTTGATG	58.376	39.130	0.00	0.00	35.23	3.07
2625	4026	6.115448	AGTAGTCTAGCACAAGGTGAAAAT	57.885	37.500	0.00	0.00	35.23	1.82
2630	4031	5.416326	ACTTCTAGTAGTCTAGCACAAGGTG	59.584	44.000	0.00	0.00	42.28	4.00
2631	4033	5.572252	ACTTCTAGTAGTCTAGCACAAGGT	58.428	41.667	0.00	0.00	42.28	3.50
2660	4062	1.815421	CCAACATCGCCCTCCTTCG	60.815	63.158	0.00	0.00	0.00	3.79
2670	4072	2.480759	CCCCGAGTAAGTACCAACATCG	60.481	54.545	0.00	0.60	0.00	3.84
2688	4106	0.533531	CCGTATAACTTTCGGCCCCC	60.534	60.000	0.00	0.00	37.90	5.40
2705	4131	2.813754	ACCATCAATGTCAACTGAACCG	59.186	45.455	0.00	0.00	0.00	4.44
2724	4165	2.481952	GCAAGTCAGTGTTCATCTCACC	59.518	50.000	0.00	0.00	36.58	4.02
2738	4179	2.334946	GCCAATGGCGAGCAAGTCA	61.335	57.895	9.14	0.00	39.62	3.41
2814	4255	6.741109	TCGTAGTACAAATCTTGTCACTCAA	58.259	36.000	0.38	0.00	44.12	3.02
2916	4357	9.307121	GCGCAGTGATATACTAAATCATTCTAT	57.693	33.333	0.30	0.00	37.60	1.98
2925	4366	7.430441	TCACTAATGCGCAGTGATATACTAAA	58.570	34.615	22.61	2.46	45.68	1.85
2926	4367	6.977213	TCACTAATGCGCAGTGATATACTAA	58.023	36.000	22.61	3.09	45.68	2.24
2927	4368	6.569179	TCACTAATGCGCAGTGATATACTA	57.431	37.500	22.61	3.72	45.68	1.82
2970	4411	6.138391	AGAGATAGATATGAGAGTGCAGGA	57.862	41.667	0.00	0.00	0.00	3.86
2988	4429	3.776969	TCCACAACAAGCATAGGAGAGAT	59.223	43.478	0.00	0.00	0.00	2.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.