Multiple sequence alignment - TraesCS4D01G247000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G247000 chr4D 100.000 9437 0 0 1 9437 415925855 415916419 0.000000e+00 17427.0
1 TraesCS4D01G247000 chr4D 93.333 180 12 0 3746 3925 415922020 415921841 5.620000e-67 267.0
2 TraesCS4D01G247000 chr4D 93.333 180 12 0 3836 4015 415922110 415921931 5.620000e-67 267.0
3 TraesCS4D01G247000 chr4D 91.720 157 9 2 5423 5578 74079504 74079351 2.060000e-51 215.0
4 TraesCS4D01G247000 chr4D 88.889 90 10 0 3746 3835 415921930 415921841 2.790000e-20 111.0
5 TraesCS4D01G247000 chr4A 95.885 6634 173 30 425 6986 48144173 48150778 0.000000e+00 10647.0
6 TraesCS4D01G247000 chr4A 95.074 1421 39 16 7062 8464 48150890 48152297 0.000000e+00 2207.0
7 TraesCS4D01G247000 chr4A 88.228 807 84 9 8535 9339 48152301 48153098 0.000000e+00 953.0
8 TraesCS4D01G247000 chr4A 80.482 456 48 15 1 428 48143602 48144044 2.560000e-80 311.0
9 TraesCS4D01G247000 chr4A 93.889 180 11 0 3836 4015 48147501 48147680 1.210000e-68 272.0
10 TraesCS4D01G247000 chr4A 91.111 180 16 0 3746 3925 48147591 48147770 2.630000e-60 244.0
11 TraesCS4D01G247000 chr4A 90.000 90 9 0 3926 4015 48147501 48147590 5.990000e-22 117.0
12 TraesCS4D01G247000 chr4A 88.764 89 10 0 8804 8892 48152640 48152728 1.000000e-19 110.0
13 TraesCS4D01G247000 chr4A 97.872 47 1 0 6985 7031 48150846 48150892 2.180000e-11 82.4
14 TraesCS4D01G247000 chr4B 96.541 2891 69 6 3842 6705 512560652 512557766 0.000000e+00 4756.0
15 TraesCS4D01G247000 chr4B 90.541 2199 121 40 1 2145 512564509 512562344 0.000000e+00 2828.0
16 TraesCS4D01G247000 chr4B 93.620 1630 51 5 2386 4015 512562345 512560769 0.000000e+00 2385.0
17 TraesCS4D01G247000 chr4B 93.987 1347 48 16 6985 8316 512557324 512555996 0.000000e+00 2008.0
18 TraesCS4D01G247000 chr4B 89.862 434 43 1 8906 9339 512555584 512555152 2.980000e-154 556.0
19 TraesCS4D01G247000 chr4B 97.569 288 4 1 6702 6989 512557673 512557389 3.060000e-134 490.0
20 TraesCS4D01G247000 chr4B 93.536 263 17 0 3746 4008 512560948 512560686 8.880000e-105 392.0
21 TraesCS4D01G247000 chr4B 81.262 539 38 20 8361 8892 512556002 512555520 2.490000e-100 377.0
22 TraesCS4D01G247000 chr4B 93.258 178 12 0 3838 4015 512561036 512560859 7.270000e-66 263.0
23 TraesCS4D01G247000 chr4B 97.619 84 2 0 3932 4015 512560652 512560569 2.750000e-30 145.0
24 TraesCS4D01G247000 chr4B 88.889 90 10 0 3746 3835 512560568 512560479 2.790000e-20 111.0
25 TraesCS4D01G247000 chr4B 81.731 104 10 7 9339 9434 606575806 606575908 2.830000e-10 78.7
26 TraesCS4D01G247000 chr3D 82.151 437 75 3 8906 9339 39540483 39540919 1.160000e-98 372.0
27 TraesCS4D01G247000 chr3D 91.667 156 10 1 5423 5578 441388819 441388667 7.420000e-51 213.0
28 TraesCS4D01G247000 chr3D 89.571 163 14 1 5416 5578 322435451 322435292 4.470000e-48 204.0
29 TraesCS4D01G247000 chr3D 81.633 98 14 4 9340 9434 560751199 560751295 2.830000e-10 78.7
30 TraesCS4D01G247000 chr3D 81.818 77 9 5 9360 9434 103349655 103349582 1.020000e-04 60.2
31 TraesCS4D01G247000 chr7A 80.607 428 76 6 8914 9337 712806034 712805610 3.290000e-84 324.0
32 TraesCS4D01G247000 chr7A 82.796 93 12 3 9340 9428 27410172 27410264 7.860000e-11 80.5
33 TraesCS4D01G247000 chr5D 79.254 429 81 6 8917 9339 345521719 345521293 9.270000e-75 292.0
34 TraesCS4D01G247000 chr5D 78.049 410 66 16 8485 8874 256721708 256721303 4.410000e-58 237.0
35 TraesCS4D01G247000 chr5A 79.187 418 79 6 8914 9325 445506634 445507049 5.580000e-72 283.0
36 TraesCS4D01G247000 chr5A 89.571 163 14 3 5413 5575 475272454 475272613 4.470000e-48 204.0
37 TraesCS4D01G247000 chr7B 79.236 419 72 13 8915 9327 677646235 677645826 2.600000e-70 278.0
38 TraesCS4D01G247000 chr2A 78.222 450 87 11 8896 9339 533530806 533530362 2.600000e-70 278.0
39 TraesCS4D01G247000 chr7D 76.389 432 91 9 8914 9339 415789637 415790063 1.230000e-53 222.0
40 TraesCS4D01G247000 chr7D 85.567 97 10 3 9341 9433 619110635 619110539 2.170000e-16 99.0
41 TraesCS4D01G247000 chr6B 76.798 431 63 18 8493 8894 240339423 240339845 3.450000e-49 207.0
42 TraesCS4D01G247000 chr3A 91.026 156 11 1 5423 5578 582283367 582283215 3.450000e-49 207.0
43 TraesCS4D01G247000 chr2B 89.634 164 13 3 5420 5582 190022887 190023047 1.240000e-48 206.0
44 TraesCS4D01G247000 chr2B 96.667 120 3 1 1225 1343 671738602 671738483 2.080000e-46 198.0
45 TraesCS4D01G247000 chr2B 81.818 99 13 4 9340 9434 744848425 744848522 2.830000e-10 78.7
46 TraesCS4D01G247000 chr2B 81.818 99 13 4 9340 9434 744868124 744868221 2.830000e-10 78.7
47 TraesCS4D01G247000 chr3B 89.571 163 14 1 5416 5578 396272038 396271879 4.470000e-48 204.0
48 TraesCS4D01G247000 chr3B 80.000 100 14 5 9339 9434 153942519 153942422 1.700000e-07 69.4
49 TraesCS4D01G247000 chr6A 78.395 324 48 13 8579 8884 184946664 184946983 3.480000e-44 191.0
50 TraesCS4D01G247000 chr6D 81.818 99 13 4 9340 9434 427226573 427226476 2.830000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G247000 chr4D 415916419 415925855 9436 True 17427.000000 17427 100.000000 1 9437 1 chr4D.!!$R2 9436
1 TraesCS4D01G247000 chr4A 48143602 48153098 9496 False 1660.377778 10647 91.256111 1 9339 9 chr4A.!!$F1 9338
2 TraesCS4D01G247000 chr4B 512555152 512564509 9357 True 1301.000000 4756 92.425818 1 9339 11 chr4B.!!$R1 9338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 779 0.249405 GAAACACGACCCCACACGTA 60.249 55.000 0.00 0.00 40.76 3.57 F
1089 1284 0.465097 AGCAGAGGAATCCAATGGCG 60.465 55.000 0.61 0.00 0.00 5.69 F
1091 1286 1.152881 AGAGGAATCCAATGGCGGC 60.153 57.895 0.00 0.00 0.00 6.53 F
2694 2910 0.474184 CACAGGGGAACTCAGGTTGT 59.526 55.000 0.00 0.00 35.58 3.32 F
3659 3875 1.270147 ACACCGCTTACTCACAAGTCC 60.270 52.381 0.00 0.00 36.92 3.85 F
4352 4882 0.951040 CAAGTTCCACCGAGGTCTGC 60.951 60.000 0.00 0.00 39.02 4.26 F
4811 5342 1.269517 TGCTTGCTTTTTGCCCTAACG 60.270 47.619 0.00 0.00 42.00 3.18 F
5907 6441 1.056660 AAGATGGAACCACCTCGTGT 58.943 50.000 0.00 0.00 39.86 4.49 F
6073 6607 1.202463 AGTCTCTCTGTGTGTGTGTGC 60.202 52.381 0.00 0.00 0.00 4.57 F
7065 7788 0.464013 CAGCATGCCTTCTCCTGGAG 60.464 60.000 17.84 17.84 0.00 3.86 F
7990 8732 0.519077 GAAGTTTTCAGGCCTGCGAG 59.481 55.000 28.91 4.37 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2163 0.600057 CTCTGGAGGCTTTTTGCACC 59.400 55.000 0.00 0.0 45.15 5.01 R
2602 2818 5.163913 GCAAACTCAGTCTCATGTGATACAC 60.164 44.000 0.02 0.0 34.56 2.90 R
3056 3272 5.358725 TCCCTTTTATTTTATTGCGAGGACC 59.641 40.000 0.00 0.0 0.00 4.46 R
3883 4279 0.250467 AAGACACGATGCAACAGGCT 60.250 50.000 0.00 0.0 45.15 4.58 R
5627 6160 2.038426 TCTTTGGAATCGCAGAAGACCA 59.962 45.455 0.00 0.0 43.58 4.02 R
5686 6219 1.137872 GATCCTGAGTGTTCGGCTGAT 59.862 52.381 0.00 0.0 0.00 2.90 R
6060 6594 2.023181 GTGCGCACACACACACAG 59.977 61.111 34.52 0.0 46.61 3.66 R
7065 7788 0.317854 GTGGAAGCACCGTTTTCTGC 60.318 55.000 0.00 0.0 42.61 4.26 R
7934 8676 0.108992 CGGCTGAGGTACTTGCGTTA 60.109 55.000 0.00 0.0 41.55 3.18 R
8325 9067 0.038526 GTTTTCAGCTCCGACTCCGA 60.039 55.000 0.00 0.0 38.22 4.55 R
8903 9652 0.252742 AAGGATGAGGACGAAGGGGT 60.253 55.000 0.00 0.0 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.567537 GTGACAGCTTGCGCGTTAA 59.432 52.632 8.43 2.55 42.32 2.01
55 56 1.227089 CGCTGGAGAGTGAATCCCG 60.227 63.158 0.00 0.00 35.86 5.14
58 59 1.186200 CTGGAGAGTGAATCCCGACA 58.814 55.000 0.00 0.00 35.86 4.35
100 110 2.607892 GCACTCACGTGGAAGCACC 61.608 63.158 17.00 0.00 41.51 5.01
132 142 1.697432 CCATTTCATAGGGCTACGGGA 59.303 52.381 0.00 0.00 0.00 5.14
133 143 2.550208 CCATTTCATAGGGCTACGGGAC 60.550 54.545 0.00 0.00 0.00 4.46
134 144 1.868713 TTTCATAGGGCTACGGGACA 58.131 50.000 0.00 0.00 0.00 4.02
136 146 0.469331 TCATAGGGCTACGGGACAGG 60.469 60.000 0.00 0.00 0.00 4.00
137 147 1.152312 ATAGGGCTACGGGACAGGG 60.152 63.158 0.00 0.00 0.00 4.45
138 148 2.674672 ATAGGGCTACGGGACAGGGG 62.675 65.000 0.00 0.00 0.00 4.79
221 233 9.074443 GGAGTACGAGTATTTTTAGAAAGACTG 57.926 37.037 10.43 6.21 44.80 3.51
244 256 9.921637 ACTGTAAAAAGAAAACTCAATTCACAA 57.078 25.926 0.00 0.00 0.00 3.33
325 356 5.122869 CCATTAGTGTGGTCAGTCAATGAAG 59.877 44.000 0.00 0.00 40.43 3.02
333 364 3.188048 GGTCAGTCAATGAAGCACTCAAG 59.812 47.826 0.00 0.00 40.43 3.02
432 597 1.004277 TGGGAATCAACGAAGGAAGGG 59.996 52.381 0.00 0.00 0.00 3.95
530 705 4.445545 GCAAAAGCCGACGCCTCG 62.446 66.667 0.00 0.00 39.83 4.63
604 779 0.249405 GAAACACGACCCCACACGTA 60.249 55.000 0.00 0.00 40.76 3.57
750 925 3.336568 AGCTGCCAGCCAGTCCAT 61.337 61.111 14.25 0.00 43.77 3.41
1089 1284 0.465097 AGCAGAGGAATCCAATGGCG 60.465 55.000 0.61 0.00 0.00 5.69
1090 1285 1.450531 GCAGAGGAATCCAATGGCGG 61.451 60.000 0.61 0.00 0.00 6.13
1091 1286 1.152881 AGAGGAATCCAATGGCGGC 60.153 57.895 0.00 0.00 0.00 6.53
1092 1287 2.516930 AGGAATCCAATGGCGGCG 60.517 61.111 0.51 0.51 0.00 6.46
1093 1288 4.270376 GGAATCCAATGGCGGCGC 62.270 66.667 26.17 26.17 0.00 6.53
1094 1289 3.517140 GAATCCAATGGCGGCGCA 61.517 61.111 34.36 19.88 0.00 6.09
1095 1290 3.474230 GAATCCAATGGCGGCGCAG 62.474 63.158 34.36 18.97 0.00 5.18
1222 1417 3.456380 CCCCCTTCTCCATTTCTTTGA 57.544 47.619 0.00 0.00 0.00 2.69
1223 1418 3.092301 CCCCCTTCTCCATTTCTTTGAC 58.908 50.000 0.00 0.00 0.00 3.18
1633 1839 9.825972 CTACTTAATTTGTTACCATTGTGACAG 57.174 33.333 0.00 0.00 41.38 3.51
1710 1919 3.350833 TCCTACGTCTTCTTACCACTCC 58.649 50.000 0.00 0.00 0.00 3.85
1711 1920 3.087031 CCTACGTCTTCTTACCACTCCA 58.913 50.000 0.00 0.00 0.00 3.86
1712 1921 3.508793 CCTACGTCTTCTTACCACTCCAA 59.491 47.826 0.00 0.00 0.00 3.53
1728 1937 5.163683 CCACTCCAACATGATTGTTCATCTC 60.164 44.000 0.00 0.00 44.24 2.75
1796 2010 1.278238 CTAGCTTACCAACTTCCGCG 58.722 55.000 0.00 0.00 0.00 6.46
1812 2026 2.103432 TCCGCGCTTGGATTAGGATAAA 59.897 45.455 5.56 0.00 31.53 1.40
1821 2035 5.772825 TGGATTAGGATAAACATGCTTGC 57.227 39.130 0.00 0.00 0.00 4.01
1949 2163 1.269309 CGATAGAGGTCTTTCTGGGCG 60.269 57.143 0.00 0.00 39.76 6.13
2082 2296 6.640907 GCTTTGGTTTCACTGTTCGATTAAAT 59.359 34.615 0.00 0.00 0.00 1.40
2105 2319 5.788450 TGCCTTGTTTTTCTTTTTGAGACA 58.212 33.333 0.00 0.00 33.02 3.41
2148 2362 8.721478 GTGACAATTGTTATCTGTAGTGAATGT 58.279 33.333 13.36 0.00 0.00 2.71
2314 2528 6.316390 GCTATTACTTGGTAAACTCATGCTGT 59.684 38.462 0.00 0.00 31.56 4.40
2336 2550 7.201652 GCTGTATCAGGTTTTATCCTCACTTTC 60.202 40.741 0.00 0.00 35.37 2.62
2694 2910 0.474184 CACAGGGGAACTCAGGTTGT 59.526 55.000 0.00 0.00 35.58 3.32
2797 3013 4.202161 CCAGAAGTGCGTATTCAGTCCTAT 60.202 45.833 0.00 0.00 0.00 2.57
2934 3150 7.713764 AATGTTGGCAAGAAAAATGAACTAC 57.286 32.000 0.00 0.00 0.00 2.73
3056 3272 4.392921 TTTGTACACCAACCAAACATGG 57.607 40.909 0.00 0.00 42.60 3.66
3147 3363 5.163652 GCTTTATGCCTCACGGTTTAATTCT 60.164 40.000 0.00 0.00 35.15 2.40
3210 3426 4.078639 GCATGGTATACTGCCTTCTTCT 57.921 45.455 2.25 0.00 32.15 2.85
3390 3606 6.751888 GCAAAATCCACATTCCAGTATGTTAC 59.248 38.462 0.00 0.00 36.64 2.50
3537 3753 3.938963 CACTTATGTACGGCATGGAAAGT 59.061 43.478 0.00 4.66 38.47 2.66
3577 3793 2.537214 GCTCAGCAAAACTGCAGAAAAC 59.463 45.455 23.35 5.56 46.76 2.43
3659 3875 1.270147 ACACCGCTTACTCACAAGTCC 60.270 52.381 0.00 0.00 36.92 3.85
3709 3925 2.228822 CACCGCTTAATCACAAGGCTTT 59.771 45.455 0.00 0.00 0.00 3.51
3712 3928 2.228822 CGCTTAATCACAAGGCTTTGGT 59.771 45.455 13.65 0.00 38.66 3.67
3753 3969 2.072298 CAGCACCTCTTACTCACAAGC 58.928 52.381 0.00 0.00 0.00 4.01
3756 3972 1.347707 CACCTCTTACTCACAAGCCCA 59.652 52.381 0.00 0.00 0.00 5.36
3803 4109 2.362889 CCACCCCATCCTGTTGCC 60.363 66.667 0.00 0.00 0.00 4.52
3883 4279 3.253838 GCCCACTACACCACCCCA 61.254 66.667 0.00 0.00 0.00 4.96
4080 4586 1.203187 ACAAGGCTGTCCAGAGAGGTA 60.203 52.381 0.00 0.00 39.02 3.08
4186 4692 4.893829 GGAAGGTTCCTCTTAAGAGTGT 57.106 45.455 26.83 8.63 44.11 3.55
4187 4693 4.823157 GGAAGGTTCCTCTTAAGAGTGTC 58.177 47.826 26.83 16.86 44.11 3.67
4349 4879 1.070289 AGTTCAAGTTCCACCGAGGTC 59.930 52.381 0.00 0.00 39.02 3.85
4352 4882 0.951040 CAAGTTCCACCGAGGTCTGC 60.951 60.000 0.00 0.00 39.02 4.26
4811 5342 1.269517 TGCTTGCTTTTTGCCCTAACG 60.270 47.619 0.00 0.00 42.00 3.18
4923 5454 4.613622 GCGATGTTTTACAGTTCAGTGCAT 60.614 41.667 0.00 0.00 0.00 3.96
5293 5824 5.365619 AGTAGAAGCACGAAAAGGAGAAAA 58.634 37.500 0.00 0.00 0.00 2.29
5294 5825 4.553756 AGAAGCACGAAAAGGAGAAAAC 57.446 40.909 0.00 0.00 0.00 2.43
5514 6045 4.998033 TGAGTGAACACACACACTAAAACA 59.002 37.500 7.68 0.00 45.54 2.83
5622 6155 4.615912 GCAAGTGATGACGGTTTATGCTTT 60.616 41.667 0.00 0.00 0.00 3.51
5627 6160 5.121768 GTGATGACGGTTTATGCTTTACTGT 59.878 40.000 0.00 0.00 34.24 3.55
5907 6441 1.056660 AAGATGGAACCACCTCGTGT 58.943 50.000 0.00 0.00 39.86 4.49
6060 6594 7.432869 AGATCTTGCATTGTATACAGTCTCTC 58.567 38.462 5.56 0.00 0.00 3.20
6073 6607 1.202463 AGTCTCTCTGTGTGTGTGTGC 60.202 52.381 0.00 0.00 0.00 4.57
6076 6610 2.125350 TCTGTGTGTGTGTGCGCA 60.125 55.556 5.66 5.66 0.00 6.09
6202 6756 2.261361 CGGACTGACATCGGCACA 59.739 61.111 0.00 0.00 0.00 4.57
6367 6921 3.989817 GTGAAGTTTTCCATTGGACATGC 59.010 43.478 4.45 0.00 0.00 4.06
6943 7594 1.636003 GGACCCACCTTCAGGATTTCT 59.364 52.381 0.00 0.00 38.94 2.52
6944 7595 2.041755 GGACCCACCTTCAGGATTTCTT 59.958 50.000 0.00 0.00 38.94 2.52
6945 7596 3.348119 GACCCACCTTCAGGATTTCTTC 58.652 50.000 0.00 0.00 38.94 2.87
7065 7788 0.464013 CAGCATGCCTTCTCCTGGAG 60.464 60.000 17.84 17.84 0.00 3.86
7124 7847 3.913163 AGTCCCCAATCAAGTTCTCTCTT 59.087 43.478 0.00 0.00 0.00 2.85
7202 7925 3.130516 GGTTACCAGCATTCTTTAAGGCC 59.869 47.826 0.00 0.00 43.35 5.19
7291 8014 7.942341 ACATTATCCCTGTCTTTGTTTCAGTAA 59.058 33.333 0.00 0.00 0.00 2.24
7348 8071 2.732619 GGCTGGTTAGGAGTCCGGG 61.733 68.421 0.00 0.00 0.00 5.73
7350 8073 1.551019 GCTGGTTAGGAGTCCGGGTT 61.551 60.000 0.00 0.00 0.00 4.11
7463 8198 5.074115 TGTACCCCCTGATGTTTTAAACAG 58.926 41.667 15.83 2.99 45.95 3.16
7559 8294 2.372172 ACAATGAAGTTTCGGACCCTCT 59.628 45.455 0.00 0.00 0.00 3.69
7596 8334 2.803133 GCAAGGGACTGTTTTTGCCTTC 60.803 50.000 11.40 0.00 42.50 3.46
7634 8374 8.974060 AAATGGTTACTACAGACTCTTTTCAA 57.026 30.769 0.00 0.00 0.00 2.69
7639 8379 7.009357 GGTTACTACAGACTCTTTTCAATAGCG 59.991 40.741 0.00 0.00 0.00 4.26
7669 8411 4.526970 TGCCTCTGATTTTCCTATTCACC 58.473 43.478 0.00 0.00 0.00 4.02
7772 8514 5.118990 AGCTATCTGCACGACATGTTTTAT 58.881 37.500 0.00 0.00 45.94 1.40
7835 8577 1.887242 TGTGCAGCAGGTGAACGTC 60.887 57.895 3.02 0.00 37.56 4.34
7934 8676 1.208293 GCCTCTTCGTCTTGGAGGAAT 59.792 52.381 11.79 0.00 46.82 3.01
7940 8682 1.546923 TCGTCTTGGAGGAATAACGCA 59.453 47.619 0.00 0.00 0.00 5.24
7990 8732 0.519077 GAAGTTTTCAGGCCTGCGAG 59.481 55.000 28.91 4.37 0.00 5.03
8021 8763 1.949525 TCTGAGGAACAAAAGCAGCAC 59.050 47.619 0.00 0.00 0.00 4.40
8068 8810 3.334463 GGAAGCATCCGAATCCGC 58.666 61.111 0.00 0.00 35.59 5.54
8219 8961 4.803426 CCCGACGCCAGTGCTCTC 62.803 72.222 0.00 0.00 34.43 3.20
8326 9068 7.969536 ATGTATGTATTCAGTGTATTGGCTC 57.030 36.000 0.00 0.00 0.00 4.70
8327 9069 5.983118 TGTATGTATTCAGTGTATTGGCTCG 59.017 40.000 0.00 0.00 0.00 5.03
8328 9070 3.792401 TGTATTCAGTGTATTGGCTCGG 58.208 45.455 0.00 0.00 0.00 4.63
8329 9071 3.449377 TGTATTCAGTGTATTGGCTCGGA 59.551 43.478 0.00 0.00 0.00 4.55
8330 9072 2.672961 TTCAGTGTATTGGCTCGGAG 57.327 50.000 0.00 0.00 0.00 4.63
8334 9076 0.527817 GTGTATTGGCTCGGAGTCGG 60.528 60.000 4.99 0.00 36.95 4.79
8414 9158 1.267806 CTGGGCAGTGTCATGTCAAAC 59.732 52.381 0.00 0.00 0.00 2.93
8477 9225 1.553248 TGGTTAGTTAGCAGCGGATGT 59.447 47.619 0.00 0.00 0.00 3.06
8479 9227 2.202566 GTTAGTTAGCAGCGGATGTCC 58.797 52.381 0.00 0.00 0.00 4.02
8489 9237 2.990479 GGATGTCCGCCCTGTTCT 59.010 61.111 0.00 0.00 0.00 3.01
8490 9238 1.153349 GGATGTCCGCCCTGTTCTC 60.153 63.158 0.00 0.00 0.00 2.87
8491 9239 1.596934 GATGTCCGCCCTGTTCTCA 59.403 57.895 0.00 0.00 0.00 3.27
8492 9240 0.179000 GATGTCCGCCCTGTTCTCAT 59.821 55.000 0.00 0.00 0.00 2.90
8493 9241 0.620556 ATGTCCGCCCTGTTCTCATT 59.379 50.000 0.00 0.00 0.00 2.57
8494 9242 0.400213 TGTCCGCCCTGTTCTCATTT 59.600 50.000 0.00 0.00 0.00 2.32
8495 9243 0.804989 GTCCGCCCTGTTCTCATTTG 59.195 55.000 0.00 0.00 0.00 2.32
8496 9244 0.400213 TCCGCCCTGTTCTCATTTGT 59.600 50.000 0.00 0.00 0.00 2.83
8497 9245 1.626321 TCCGCCCTGTTCTCATTTGTA 59.374 47.619 0.00 0.00 0.00 2.41
8498 9246 2.039216 TCCGCCCTGTTCTCATTTGTAA 59.961 45.455 0.00 0.00 0.00 2.41
8519 9267 8.804912 TGTAACTACAACCCTTACTTTTGAAA 57.195 30.769 0.00 0.00 32.40 2.69
8524 9272 4.337274 ACAACCCTTACTTTTGAAACCTCG 59.663 41.667 0.00 0.00 0.00 4.63
8528 9276 6.536447 ACCCTTACTTTTGAAACCTCGAATA 58.464 36.000 0.00 0.00 0.00 1.75
8529 9277 6.429078 ACCCTTACTTTTGAAACCTCGAATAC 59.571 38.462 0.00 0.00 0.00 1.89
8535 9283 5.697473 TTTGAAACCTCGAATACATGCAA 57.303 34.783 0.00 0.00 0.00 4.08
8536 9284 5.697473 TTGAAACCTCGAATACATGCAAA 57.303 34.783 0.00 0.00 0.00 3.68
8537 9285 5.041951 TGAAACCTCGAATACATGCAAAC 57.958 39.130 0.00 0.00 0.00 2.93
8538 9286 4.517075 TGAAACCTCGAATACATGCAAACA 59.483 37.500 0.00 0.00 0.00 2.83
8539 9287 4.419522 AACCTCGAATACATGCAAACAC 57.580 40.909 0.00 0.00 0.00 3.32
8540 9288 3.407698 ACCTCGAATACATGCAAACACA 58.592 40.909 0.00 0.00 0.00 3.72
8541 9289 4.009675 ACCTCGAATACATGCAAACACAT 58.990 39.130 0.00 0.00 0.00 3.21
8562 9310 4.598406 TGCACGATTTATCATCACACAC 57.402 40.909 0.00 0.00 0.00 3.82
8752 9501 4.864806 TCTTAAGTTGTCGATGCATCTCAC 59.135 41.667 23.73 19.11 0.00 3.51
8754 9503 0.647410 GTTGTCGATGCATCTCACGG 59.353 55.000 23.73 8.54 0.00 4.94
8761 9510 2.621338 GATGCATCTCACGGAAGTTGA 58.379 47.619 19.70 0.00 46.40 3.18
8781 9530 1.143684 ACAACATGCTCCACCTCTTGT 59.856 47.619 0.00 0.00 0.00 3.16
8782 9531 2.233271 CAACATGCTCCACCTCTTGTT 58.767 47.619 0.00 0.00 32.89 2.83
8783 9532 2.191128 ACATGCTCCACCTCTTGTTC 57.809 50.000 0.00 0.00 0.00 3.18
8784 9533 1.271597 ACATGCTCCACCTCTTGTTCC 60.272 52.381 0.00 0.00 0.00 3.62
8798 9547 1.079057 GTTCCAGGAGGCGGACTTC 60.079 63.158 0.00 0.00 30.29 3.01
8799 9548 1.229209 TTCCAGGAGGCGGACTTCT 60.229 57.895 0.00 0.00 34.41 2.85
8800 9549 0.836400 TTCCAGGAGGCGGACTTCTT 60.836 55.000 0.00 0.00 30.38 2.52
8801 9550 1.219393 CCAGGAGGCGGACTTCTTC 59.781 63.158 0.00 0.00 30.38 2.87
8802 9551 1.544825 CCAGGAGGCGGACTTCTTCA 61.545 60.000 0.00 0.00 30.38 3.02
8819 9568 6.149142 ACTTCTTCAGACTTCTCAAATCATGC 59.851 38.462 0.00 0.00 0.00 4.06
8833 9582 2.117206 ATGCGGGTTGCCCTTTCA 59.883 55.556 2.44 0.00 45.60 2.69
8843 9592 1.076705 GCCCTTTCACCCTCATCCC 60.077 63.158 0.00 0.00 0.00 3.85
8847 9596 0.704076 CTTTCACCCTCATCCCCCAA 59.296 55.000 0.00 0.00 0.00 4.12
8859 9608 3.514706 TCATCCCCCAAAATCATGTTGTG 59.485 43.478 0.00 0.00 0.00 3.33
8863 9612 2.807392 CCCCAAAATCATGTTGTGCAAC 59.193 45.455 8.01 8.01 41.50 4.17
8879 9628 5.654497 TGTGCAACATTACAAAACATGTCA 58.346 33.333 0.00 0.00 45.67 3.58
8897 9646 5.611796 TGTCATGAGTTGTCAAAGTATGC 57.388 39.130 0.00 0.00 35.88 3.14
8898 9647 5.062528 TGTCATGAGTTGTCAAAGTATGCA 58.937 37.500 0.00 0.00 35.88 3.96
8899 9648 5.179929 TGTCATGAGTTGTCAAAGTATGCAG 59.820 40.000 0.00 0.00 35.88 4.41
8902 9651 4.065088 TGAGTTGTCAAAGTATGCAGGTC 58.935 43.478 0.00 0.00 0.00 3.85
8903 9652 4.065088 GAGTTGTCAAAGTATGCAGGTCA 58.935 43.478 0.00 0.00 0.00 4.02
8911 9660 0.462047 GTATGCAGGTCACCCCTTCG 60.462 60.000 0.00 0.00 42.73 3.79
8912 9661 0.907704 TATGCAGGTCACCCCTTCGT 60.908 55.000 0.00 0.00 42.73 3.85
8922 9671 0.252742 ACCCCTTCGTCCTCATCCTT 60.253 55.000 0.00 0.00 0.00 3.36
8969 9718 6.267817 ACAAAACATGTCATGAGTTGTCAAG 58.732 36.000 19.77 6.48 37.96 3.02
8970 9719 5.443185 AAACATGTCATGAGTTGTCAAGG 57.557 39.130 19.77 0.00 35.88 3.61
9055 9805 0.842635 ATGCCCTCTCCACATCCTTC 59.157 55.000 0.00 0.00 0.00 3.46
9060 9810 2.359781 CCCTCTCCACATCCTTCCTAGT 60.360 54.545 0.00 0.00 0.00 2.57
9108 9858 7.637511 AGAGATTGTTTTCTACCATGAGGATT 58.362 34.615 0.00 0.00 38.69 3.01
9117 9867 9.944376 TTTTCTACCATGAGGATTGTATATAGC 57.056 33.333 0.00 0.00 38.69 2.97
9129 9879 5.728351 TTGTATATAGCCTTCACAAACGC 57.272 39.130 0.00 0.00 0.00 4.84
9146 9896 0.532862 CGCCGCCCATTGAGAATAGT 60.533 55.000 0.00 0.00 0.00 2.12
9190 9940 4.508492 CACATGTTGTAGTTGTGACCGTTA 59.492 41.667 0.00 0.00 42.59 3.18
9230 9980 0.779997 AGCCTCCCCATCACAAAGTT 59.220 50.000 0.00 0.00 0.00 2.66
9251 10001 3.594603 TCTTGGACAAAGGAGATCGTC 57.405 47.619 0.00 0.00 36.46 4.20
9252 10002 2.897326 TCTTGGACAAAGGAGATCGTCA 59.103 45.455 0.00 0.00 36.46 4.35
9283 10033 3.195610 TGATGTCATCGCTAGAACCAAGT 59.804 43.478 8.29 0.00 0.00 3.16
9301 10051 2.034124 AGTGTGCCAAAGAAAGCATGT 58.966 42.857 0.00 0.00 41.86 3.21
9302 10052 2.431782 AGTGTGCCAAAGAAAGCATGTT 59.568 40.909 0.00 0.00 41.86 2.71
9311 10061 6.372381 GCCAAAGAAAGCATGTTAAATCCAAT 59.628 34.615 0.00 0.00 0.00 3.16
9314 10064 9.211485 CAAAGAAAGCATGTTAAATCCAATTCT 57.789 29.630 0.00 0.00 0.00 2.40
9339 10089 3.378112 TGATGCCACTGCTTTAAGTATGC 59.622 43.478 0.00 0.00 38.71 3.14
9340 10090 2.789213 TGCCACTGCTTTAAGTATGCA 58.211 42.857 0.00 0.00 35.77 3.96
9341 10091 3.153130 TGCCACTGCTTTAAGTATGCAA 58.847 40.909 0.00 0.00 36.59 4.08
9342 10092 3.571828 TGCCACTGCTTTAAGTATGCAAA 59.428 39.130 0.00 0.00 36.59 3.68
9343 10093 4.168760 GCCACTGCTTTAAGTATGCAAAG 58.831 43.478 0.00 0.00 36.59 2.77
9351 10101 4.799564 TTAAGTATGCAAAGCTTTGGGG 57.200 40.909 34.02 14.86 38.57 4.96
9352 10102 2.309136 AGTATGCAAAGCTTTGGGGT 57.691 45.000 34.02 1.13 38.57 4.95
9353 10103 3.449746 AGTATGCAAAGCTTTGGGGTA 57.550 42.857 34.02 13.77 38.57 3.69
9354 10104 3.356290 AGTATGCAAAGCTTTGGGGTAG 58.644 45.455 34.02 13.48 38.57 3.18
9355 10105 2.309136 ATGCAAAGCTTTGGGGTAGT 57.691 45.000 34.02 0.00 38.57 2.73
9356 10106 2.080654 TGCAAAGCTTTGGGGTAGTT 57.919 45.000 34.02 0.00 38.57 2.24
9357 10107 2.393646 TGCAAAGCTTTGGGGTAGTTT 58.606 42.857 34.02 0.00 38.57 2.66
9358 10108 2.769095 TGCAAAGCTTTGGGGTAGTTTT 59.231 40.909 34.02 0.00 38.57 2.43
9359 10109 3.961408 TGCAAAGCTTTGGGGTAGTTTTA 59.039 39.130 34.02 0.27 38.57 1.52
9360 10110 4.591072 TGCAAAGCTTTGGGGTAGTTTTAT 59.409 37.500 34.02 0.00 38.57 1.40
9361 10111 5.071115 TGCAAAGCTTTGGGGTAGTTTTATT 59.929 36.000 34.02 0.00 38.57 1.40
9362 10112 5.408299 GCAAAGCTTTGGGGTAGTTTTATTG 59.592 40.000 34.02 9.87 38.57 1.90
9363 10113 6.521162 CAAAGCTTTGGGGTAGTTTTATTGT 58.479 36.000 28.12 0.00 34.59 2.71
9364 10114 5.977489 AGCTTTGGGGTAGTTTTATTGTC 57.023 39.130 0.00 0.00 0.00 3.18
9365 10115 5.390387 AGCTTTGGGGTAGTTTTATTGTCA 58.610 37.500 0.00 0.00 0.00 3.58
9366 10116 5.836358 AGCTTTGGGGTAGTTTTATTGTCAA 59.164 36.000 0.00 0.00 0.00 3.18
9367 10117 6.496911 AGCTTTGGGGTAGTTTTATTGTCAAT 59.503 34.615 3.06 3.06 0.00 2.57
9368 10118 6.589907 GCTTTGGGGTAGTTTTATTGTCAATG 59.410 38.462 8.39 0.00 0.00 2.82
9369 10119 6.597832 TTGGGGTAGTTTTATTGTCAATGG 57.402 37.500 8.39 0.00 0.00 3.16
9370 10120 5.893500 TGGGGTAGTTTTATTGTCAATGGA 58.106 37.500 8.39 0.00 0.00 3.41
9371 10121 6.498538 TGGGGTAGTTTTATTGTCAATGGAT 58.501 36.000 8.39 0.00 0.00 3.41
9372 10122 6.379703 TGGGGTAGTTTTATTGTCAATGGATG 59.620 38.462 8.39 0.00 0.00 3.51
9373 10123 6.273071 GGGTAGTTTTATTGTCAATGGATGC 58.727 40.000 8.39 0.00 0.00 3.91
9374 10124 6.127479 GGGTAGTTTTATTGTCAATGGATGCA 60.127 38.462 8.39 0.00 0.00 3.96
9375 10125 7.319646 GGTAGTTTTATTGTCAATGGATGCAA 58.680 34.615 8.39 0.00 32.34 4.08
9376 10126 7.981225 GGTAGTTTTATTGTCAATGGATGCAAT 59.019 33.333 8.39 0.00 38.46 3.56
9377 10127 9.023967 GTAGTTTTATTGTCAATGGATGCAATC 57.976 33.333 8.39 0.00 44.55 2.67
9391 10141 5.914085 GATGCAATCAGCTAAACGAGTAT 57.086 39.130 0.00 0.00 44.70 2.12
9393 10143 6.771188 ATGCAATCAGCTAAACGAGTATAC 57.229 37.500 0.00 0.00 45.94 1.47
9394 10144 5.047847 TGCAATCAGCTAAACGAGTATACC 58.952 41.667 0.00 0.00 45.94 2.73
9395 10145 5.163447 TGCAATCAGCTAAACGAGTATACCT 60.163 40.000 0.00 0.00 45.94 3.08
9396 10146 5.175856 GCAATCAGCTAAACGAGTATACCTG 59.824 44.000 0.00 0.00 41.15 4.00
9397 10147 6.504398 CAATCAGCTAAACGAGTATACCTGA 58.496 40.000 0.00 3.19 33.26 3.86
9398 10148 5.752892 TCAGCTAAACGAGTATACCTGAG 57.247 43.478 0.00 0.00 0.00 3.35
9399 10149 5.434408 TCAGCTAAACGAGTATACCTGAGA 58.566 41.667 0.00 0.00 0.00 3.27
9400 10150 5.884232 TCAGCTAAACGAGTATACCTGAGAA 59.116 40.000 0.00 0.00 0.00 2.87
9401 10151 6.546403 TCAGCTAAACGAGTATACCTGAGAAT 59.454 38.462 0.00 0.00 0.00 2.40
9402 10152 6.858993 CAGCTAAACGAGTATACCTGAGAATC 59.141 42.308 0.00 0.00 0.00 2.52
9403 10153 6.016108 AGCTAAACGAGTATACCTGAGAATCC 60.016 42.308 0.00 0.00 0.00 3.01
9404 10154 6.016108 GCTAAACGAGTATACCTGAGAATCCT 60.016 42.308 0.00 0.00 0.00 3.24
9405 10155 6.394025 AAACGAGTATACCTGAGAATCCTC 57.606 41.667 0.00 0.00 39.86 3.71
9406 10156 5.313280 ACGAGTATACCTGAGAATCCTCT 57.687 43.478 0.00 0.00 40.10 3.69
9407 10157 5.697067 ACGAGTATACCTGAGAATCCTCTT 58.303 41.667 0.00 0.00 40.10 2.85
9408 10158 5.533154 ACGAGTATACCTGAGAATCCTCTTG 59.467 44.000 0.00 0.00 40.10 3.02
9409 10159 5.765677 CGAGTATACCTGAGAATCCTCTTGA 59.234 44.000 0.00 0.00 40.10 3.02
9410 10160 6.432783 CGAGTATACCTGAGAATCCTCTTGAT 59.567 42.308 0.00 0.00 40.10 2.57
9411 10161 7.537596 AGTATACCTGAGAATCCTCTTGATG 57.462 40.000 0.00 0.00 40.10 3.07
9412 10162 3.557228 ACCTGAGAATCCTCTTGATGC 57.443 47.619 0.00 0.00 40.10 3.91
9413 10163 3.113824 ACCTGAGAATCCTCTTGATGCT 58.886 45.455 0.00 0.00 42.55 3.79
9416 10166 3.834489 GAGAATCCTCTTGATGCTCCA 57.166 47.619 0.00 0.00 46.80 3.86
9417 10167 4.148128 GAGAATCCTCTTGATGCTCCAA 57.852 45.455 0.00 0.00 46.80 3.53
9418 10168 4.716794 GAGAATCCTCTTGATGCTCCAAT 58.283 43.478 0.00 0.00 46.80 3.16
9419 10169 5.126699 AGAATCCTCTTGATGCTCCAATT 57.873 39.130 0.00 0.00 33.71 2.32
9420 10170 4.888239 AGAATCCTCTTGATGCTCCAATTG 59.112 41.667 0.00 0.00 33.71 2.32
9421 10171 2.372264 TCCTCTTGATGCTCCAATTGC 58.628 47.619 0.00 0.00 0.00 3.56
9422 10172 1.407979 CCTCTTGATGCTCCAATTGCC 59.592 52.381 0.00 0.00 0.00 4.52
9423 10173 2.097036 CTCTTGATGCTCCAATTGCCA 58.903 47.619 0.00 0.00 0.00 4.92
9424 10174 2.494471 CTCTTGATGCTCCAATTGCCAA 59.506 45.455 0.00 0.00 0.00 4.52
9425 10175 2.231964 TCTTGATGCTCCAATTGCCAAC 59.768 45.455 0.00 0.00 0.00 3.77
9426 10176 1.630223 TGATGCTCCAATTGCCAACA 58.370 45.000 0.00 0.00 0.00 3.33
9427 10177 1.969208 TGATGCTCCAATTGCCAACAA 59.031 42.857 0.00 0.00 40.87 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.955919 ACAAGCTGGAGCCTTAACGC 60.956 55.000 0.00 0.00 43.38 4.84
39 40 1.134965 GTGTCGGGATTCACTCTCCAG 60.135 57.143 0.00 0.00 34.24 3.86
41 42 0.179134 CGTGTCGGGATTCACTCTCC 60.179 60.000 0.00 0.00 33.07 3.71
55 56 4.404507 AATATGCAAGTTGTCACGTGTC 57.595 40.909 16.51 10.98 35.04 3.67
58 59 4.320023 TGGTAATATGCAAGTTGTCACGT 58.680 39.130 4.48 0.00 0.00 4.49
100 110 6.509656 CCCTATGAAATGGACATGTTTGATG 58.490 40.000 0.00 0.00 0.00 3.07
165 175 3.564225 TCTTTTCTTTCTTTCTGGACGCC 59.436 43.478 0.00 0.00 0.00 5.68
264 280 1.900486 ACCTAACCACCTCTTTCCTCG 59.100 52.381 0.00 0.00 0.00 4.63
530 705 1.873698 TTTCGTTGGTGTAGAGTGCC 58.126 50.000 0.00 0.00 0.00 5.01
537 712 3.395639 GAGGTGTGATTTCGTTGGTGTA 58.604 45.455 0.00 0.00 0.00 2.90
583 758 2.109387 TGTGGGGTCGTGTTTCCG 59.891 61.111 0.00 0.00 0.00 4.30
584 759 2.248835 CGTGTGGGGTCGTGTTTCC 61.249 63.158 0.00 0.00 0.00 3.13
689 864 4.231439 GGTACGCGTGGGGGATCC 62.231 72.222 24.59 1.92 0.00 3.36
795 971 3.825160 ATGCTGTGTTCCGCGGTGT 62.825 57.895 27.15 0.00 0.00 4.16
850 1026 3.948086 GAGACACTGACGGGTCGCG 62.948 68.421 7.88 7.88 39.01 5.87
851 1027 2.126424 GAGACACTGACGGGTCGC 60.126 66.667 0.00 0.00 39.01 5.19
854 1030 4.039357 CGCGAGACACTGACGGGT 62.039 66.667 0.00 0.00 35.79 5.28
882 1058 3.327404 CCGCCTACCCAACCCACT 61.327 66.667 0.00 0.00 0.00 4.00
884 1060 4.986774 ACCCGCCTACCCAACCCA 62.987 66.667 0.00 0.00 0.00 4.51
1209 1404 7.033791 CCAATCAATCAGTCAAAGAAATGGAG 58.966 38.462 0.00 0.00 0.00 3.86
1222 1417 0.101759 GCATGCGCCAATCAATCAGT 59.898 50.000 4.18 0.00 0.00 3.41
1223 1418 2.881441 GCATGCGCCAATCAATCAG 58.119 52.632 4.18 0.00 0.00 2.90
1651 1857 2.357517 AACTTGAGCGACGCTGGG 60.358 61.111 29.85 18.12 39.88 4.45
1655 1861 1.222115 AACCTCAACTTGAGCGACGC 61.222 55.000 13.03 13.03 42.98 5.19
1657 1863 1.865865 TCAACCTCAACTTGAGCGAC 58.134 50.000 12.69 0.00 42.98 5.19
1712 1921 3.190079 CGGACGAGATGAACAATCATGT 58.810 45.455 0.00 0.00 46.30 3.21
1796 2010 6.211515 CAAGCATGTTTATCCTAATCCAAGC 58.788 40.000 0.00 0.00 0.00 4.01
1812 2026 2.146073 GAAAGGCGTGGCAAGCATGT 62.146 55.000 25.93 15.46 36.08 3.21
1949 2163 0.600057 CTCTGGAGGCTTTTTGCACC 59.400 55.000 0.00 0.00 45.15 5.01
2082 2296 5.788450 TGTCTCAAAAAGAAAAACAAGGCA 58.212 33.333 0.00 0.00 35.21 4.75
2148 2362 8.884323 AGGGATATGCTTCACAGAAATATAAGA 58.116 33.333 0.00 0.00 0.00 2.10
2154 2368 6.328672 AGACTAGGGATATGCTTCACAGAAAT 59.671 38.462 0.00 0.00 0.00 2.17
2314 2528 6.942976 ACGAAAGTGAGGATAAAACCTGATA 58.057 36.000 0.00 0.00 46.97 2.15
2602 2818 5.163913 GCAAACTCAGTCTCATGTGATACAC 60.164 44.000 0.02 0.00 34.56 2.90
2611 2827 7.175467 TGTTTAATCATGCAAACTCAGTCTCAT 59.825 33.333 14.44 0.00 35.98 2.90
2694 2910 6.321690 TGGATCATGCACATTCATATTGAACA 59.678 34.615 0.00 0.00 39.45 3.18
2797 3013 7.202038 CCTGTCCTCAGAATCATTCTAATGGTA 60.202 40.741 0.00 0.00 43.76 3.25
3056 3272 5.358725 TCCCTTTTATTTTATTGCGAGGACC 59.641 40.000 0.00 0.00 0.00 4.46
3210 3426 8.516234 TCACTTCACTAACAAGCTTTACAAAAA 58.484 29.630 0.00 0.00 0.00 1.94
3537 3753 4.134563 GAGCCAACTGTTCTACCAAAAGA 58.865 43.478 0.00 0.00 0.00 2.52
3709 3925 0.400213 CTTGTGGGTAAGAGGCACCA 59.600 55.000 0.00 0.00 37.84 4.17
3753 3969 1.067776 GTGAGTAAGAGGTGTCGTGGG 60.068 57.143 0.00 0.00 0.00 4.61
3756 3972 2.288273 GCTTGTGAGTAAGAGGTGTCGT 60.288 50.000 0.00 0.00 0.00 4.34
3803 4109 4.698304 ACTCTCTTAGGAGAAAGACACGAG 59.302 45.833 6.00 0.00 46.50 4.18
3883 4279 0.250467 AAGACACGATGCAACAGGCT 60.250 50.000 0.00 0.00 45.15 4.58
3918 4314 2.360475 GGCCTTGTGAGCTGTCCC 60.360 66.667 0.00 0.00 0.00 4.46
3919 4315 1.376553 GAGGCCTTGTGAGCTGTCC 60.377 63.158 6.77 0.00 0.00 4.02
4080 4586 2.749621 GCGAAACAGATGGAGGAAATGT 59.250 45.455 0.00 0.00 0.00 2.71
4474 5004 4.771590 TCATTGGAAAGTTGAGCACATC 57.228 40.909 0.00 0.00 0.00 3.06
5481 6012 4.886489 TGTGTGTTCACTCATTTCAATCCA 59.114 37.500 4.59 0.00 44.14 3.41
5485 6016 4.699735 AGTGTGTGTGTTCACTCATTTCAA 59.300 37.500 10.15 0.00 45.42 2.69
5622 6155 2.094182 GGAATCGCAGAAGACCACAGTA 60.094 50.000 0.00 0.00 43.58 2.74
5627 6160 2.038426 TCTTTGGAATCGCAGAAGACCA 59.962 45.455 0.00 0.00 43.58 4.02
5686 6219 1.137872 GATCCTGAGTGTTCGGCTGAT 59.862 52.381 0.00 0.00 0.00 2.90
5907 6441 5.559770 TGAAGCACAGTCCAATATCTTGAA 58.440 37.500 0.00 0.00 34.04 2.69
6060 6594 2.023181 GTGCGCACACACACACAG 59.977 61.111 34.52 0.00 46.61 3.66
6131 6685 5.602978 GGAGATGGTAAGAGTCCCTATTTGA 59.397 44.000 0.00 0.00 0.00 2.69
6202 6756 5.585047 GGACGAAAATATAAGCAACTCCACT 59.415 40.000 0.00 0.00 0.00 4.00
6367 6921 8.715191 ATAGAAGAGAACAGTTTCAAGCATAG 57.285 34.615 0.00 0.00 33.72 2.23
6943 7594 2.191400 CAGGAGGGACATCAAGAGGAA 58.809 52.381 0.00 0.00 0.00 3.36
6944 7595 1.623557 CCAGGAGGGACATCAAGAGGA 60.624 57.143 0.00 0.00 40.01 3.71
6945 7596 0.835941 CCAGGAGGGACATCAAGAGG 59.164 60.000 0.00 0.00 40.01 3.69
7065 7788 0.317854 GTGGAAGCACCGTTTTCTGC 60.318 55.000 0.00 0.00 42.61 4.26
7124 7847 3.186283 TCCAGGAGGCCTTGTAATGTTA 58.814 45.455 6.77 0.00 33.74 2.41
7202 7925 1.384525 TTGGTGGTGTTTTCTCCGTG 58.615 50.000 0.00 0.00 36.36 4.94
7291 8014 2.922283 AGACCACTGGAGAAAATGGGAT 59.078 45.455 0.71 0.00 36.47 3.85
7354 8081 2.986019 TGGAGACCCAGAGATCCAAAAA 59.014 45.455 0.00 0.00 38.86 1.94
7463 8198 9.322773 ACAACTACCAAGAAAGAAAACTAGTAC 57.677 33.333 0.00 0.00 0.00 2.73
7559 8294 8.147704 CAGTCCCTTGCCTTTTATTTCTTAAAA 58.852 33.333 0.00 0.00 37.42 1.52
7634 8374 2.366590 TCAGAGGCATTGATGTCGCTAT 59.633 45.455 1.57 0.00 40.55 2.97
7639 8379 4.643784 AGGAAAATCAGAGGCATTGATGTC 59.356 41.667 4.78 5.87 35.54 3.06
7835 8577 2.196749 CTGTCATCCGATTCCACTTCG 58.803 52.381 0.00 0.00 36.38 3.79
7934 8676 0.108992 CGGCTGAGGTACTTGCGTTA 60.109 55.000 0.00 0.00 41.55 3.18
7940 8682 1.889530 GAGGTGCGGCTGAGGTACTT 61.890 60.000 0.00 0.00 41.55 2.24
7990 8732 0.319900 TTCCTCAGACTTGCTCGCAC 60.320 55.000 0.00 0.00 0.00 5.34
8002 8744 1.000938 GGTGCTGCTTTTGTTCCTCAG 60.001 52.381 0.00 0.00 0.00 3.35
8021 8763 0.749091 TCTTCCTGCAATGCCGATGG 60.749 55.000 1.53 0.00 0.00 3.51
8068 8810 2.281970 TGGCCTCAACAGCAGCAG 60.282 61.111 3.32 0.00 0.00 4.24
8210 8952 1.135046 CACACAAGACGAGAGCACTG 58.865 55.000 0.00 0.00 0.00 3.66
8219 8961 4.354212 CGCCACGCACACAAGACG 62.354 66.667 0.00 0.00 0.00 4.18
8325 9067 0.038526 GTTTTCAGCTCCGACTCCGA 60.039 55.000 0.00 0.00 38.22 4.55
8326 9068 0.319555 TGTTTTCAGCTCCGACTCCG 60.320 55.000 0.00 0.00 0.00 4.63
8327 9069 1.433534 CTGTTTTCAGCTCCGACTCC 58.566 55.000 0.00 0.00 41.24 3.85
8328 9070 1.270358 ACCTGTTTTCAGCTCCGACTC 60.270 52.381 0.00 0.00 45.76 3.36
8329 9071 0.759346 ACCTGTTTTCAGCTCCGACT 59.241 50.000 0.00 0.00 45.76 4.18
8330 9072 2.067013 GTACCTGTTTTCAGCTCCGAC 58.933 52.381 0.00 0.00 45.76 4.79
8334 9076 4.318831 CGACTTTGTACCTGTTTTCAGCTC 60.319 45.833 0.00 0.00 45.76 4.09
8477 9225 0.400213 ACAAATGAGAACAGGGCGGA 59.600 50.000 0.00 0.00 0.00 5.54
8479 9227 3.074412 AGTTACAAATGAGAACAGGGCG 58.926 45.455 6.00 0.00 0.00 6.13
8480 9228 5.001232 TGTAGTTACAAATGAGAACAGGGC 58.999 41.667 0.00 0.00 32.40 5.19
8481 9229 6.072673 GGTTGTAGTTACAAATGAGAACAGGG 60.073 42.308 6.31 0.00 46.54 4.45
8482 9230 6.072673 GGGTTGTAGTTACAAATGAGAACAGG 60.073 42.308 6.31 0.00 46.54 4.00
8483 9231 6.710744 AGGGTTGTAGTTACAAATGAGAACAG 59.289 38.462 6.31 0.00 46.54 3.16
8484 9232 6.597562 AGGGTTGTAGTTACAAATGAGAACA 58.402 36.000 6.31 0.00 46.54 3.18
8485 9233 7.506328 AAGGGTTGTAGTTACAAATGAGAAC 57.494 36.000 6.31 0.00 46.54 3.01
8486 9234 8.434392 AGTAAGGGTTGTAGTTACAAATGAGAA 58.566 33.333 6.31 0.00 46.54 2.87
8487 9235 7.970102 AGTAAGGGTTGTAGTTACAAATGAGA 58.030 34.615 6.31 0.00 46.54 3.27
8488 9236 8.617290 AAGTAAGGGTTGTAGTTACAAATGAG 57.383 34.615 6.31 0.00 46.54 2.90
8489 9237 8.983702 AAAGTAAGGGTTGTAGTTACAAATGA 57.016 30.769 6.31 0.00 46.54 2.57
8490 9238 9.458374 CAAAAGTAAGGGTTGTAGTTACAAATG 57.542 33.333 6.31 0.00 46.54 2.32
8491 9239 9.411189 TCAAAAGTAAGGGTTGTAGTTACAAAT 57.589 29.630 6.31 0.00 46.54 2.32
8492 9240 8.804912 TCAAAAGTAAGGGTTGTAGTTACAAA 57.195 30.769 6.31 0.00 46.54 2.83
8493 9241 8.804912 TTCAAAAGTAAGGGTTGTAGTTACAA 57.195 30.769 0.73 0.73 43.32 2.41
8494 9242 8.676401 GTTTCAAAAGTAAGGGTTGTAGTTACA 58.324 33.333 0.00 0.00 0.00 2.41
8495 9243 8.131100 GGTTTCAAAAGTAAGGGTTGTAGTTAC 58.869 37.037 0.00 0.00 0.00 2.50
8496 9244 8.054572 AGGTTTCAAAAGTAAGGGTTGTAGTTA 58.945 33.333 0.00 0.00 0.00 2.24
8497 9245 6.893554 AGGTTTCAAAAGTAAGGGTTGTAGTT 59.106 34.615 0.00 0.00 0.00 2.24
8498 9246 6.429151 AGGTTTCAAAAGTAAGGGTTGTAGT 58.571 36.000 0.00 0.00 0.00 2.73
8519 9267 3.407698 TGTGTTTGCATGTATTCGAGGT 58.592 40.909 0.00 0.00 0.00 3.85
8535 9283 5.123661 TGTGATGATAAATCGTGCATGTGTT 59.876 36.000 5.68 4.12 0.00 3.32
8536 9284 4.635324 TGTGATGATAAATCGTGCATGTGT 59.365 37.500 5.68 0.00 0.00 3.72
8537 9285 4.965762 GTGTGATGATAAATCGTGCATGTG 59.034 41.667 5.68 0.00 0.00 3.21
8538 9286 4.635324 TGTGTGATGATAAATCGTGCATGT 59.365 37.500 5.68 0.00 0.00 3.21
8539 9287 4.965762 GTGTGTGATGATAAATCGTGCATG 59.034 41.667 0.00 0.00 0.00 4.06
8540 9288 4.635324 TGTGTGTGATGATAAATCGTGCAT 59.365 37.500 0.00 0.00 0.00 3.96
8541 9289 3.999663 TGTGTGTGATGATAAATCGTGCA 59.000 39.130 0.00 0.00 0.00 4.57
8542 9290 4.598406 TGTGTGTGATGATAAATCGTGC 57.402 40.909 0.00 0.00 0.00 5.34
8543 9291 6.369799 TGTTTGTGTGTGATGATAAATCGTG 58.630 36.000 0.00 0.00 0.00 4.35
8544 9292 6.552859 TGTTTGTGTGTGATGATAAATCGT 57.447 33.333 0.00 0.00 0.00 3.73
8545 9293 7.750014 TCATTGTTTGTGTGTGATGATAAATCG 59.250 33.333 0.00 0.00 0.00 3.34
8546 9294 8.969121 TCATTGTTTGTGTGTGATGATAAATC 57.031 30.769 0.00 0.00 0.00 2.17
8547 9295 9.932207 ATTCATTGTTTGTGTGTGATGATAAAT 57.068 25.926 0.00 0.00 0.00 1.40
8562 9310 2.538861 TGTGTGCGCAATTCATTGTTTG 59.461 40.909 14.00 0.00 39.88 2.93
8689 9437 6.371271 TGCAACTTCTCAATGATCGTATGAAA 59.629 34.615 0.00 0.00 0.00 2.69
8691 9439 5.418676 TGCAACTTCTCAATGATCGTATGA 58.581 37.500 0.00 0.00 0.00 2.15
8696 9444 4.340263 CACATGCAACTTCTCAATGATCG 58.660 43.478 0.00 0.00 0.00 3.69
8752 9501 1.197721 GGAGCATGTTGTCAACTTCCG 59.802 52.381 16.45 4.05 0.00 4.30
8754 9503 2.030805 GGTGGAGCATGTTGTCAACTTC 60.031 50.000 16.45 8.79 0.00 3.01
8761 9510 1.143684 ACAAGAGGTGGAGCATGTTGT 59.856 47.619 0.00 0.00 39.90 3.32
8781 9530 0.836400 AAGAAGTCCGCCTCCTGGAA 60.836 55.000 0.00 0.00 37.23 3.53
8782 9531 1.229209 AAGAAGTCCGCCTCCTGGA 60.229 57.895 0.00 0.00 34.57 3.86
8783 9532 1.219393 GAAGAAGTCCGCCTCCTGG 59.781 63.158 0.00 0.00 0.00 4.45
8784 9533 0.108424 CTGAAGAAGTCCGCCTCCTG 60.108 60.000 0.00 0.00 0.00 3.86
8798 9547 4.201792 CCGCATGATTTGAGAAGTCTGAAG 60.202 45.833 0.00 0.00 0.00 3.02
8799 9548 3.686241 CCGCATGATTTGAGAAGTCTGAA 59.314 43.478 0.00 0.00 0.00 3.02
8800 9549 3.264947 CCGCATGATTTGAGAAGTCTGA 58.735 45.455 0.00 0.00 0.00 3.27
8801 9550 2.353889 CCCGCATGATTTGAGAAGTCTG 59.646 50.000 0.00 0.00 0.00 3.51
8802 9551 2.026822 ACCCGCATGATTTGAGAAGTCT 60.027 45.455 0.00 0.00 0.00 3.24
8833 9582 1.392407 TGATTTTGGGGGATGAGGGT 58.608 50.000 0.00 0.00 0.00 4.34
8843 9592 3.464907 TGTTGCACAACATGATTTTGGG 58.535 40.909 12.02 0.00 45.42 4.12
8859 9608 6.642131 ACTCATGACATGTTTTGTAATGTTGC 59.358 34.615 14.98 0.00 44.67 4.17
8863 9612 7.861872 TGACAACTCATGACATGTTTTGTAATG 59.138 33.333 24.68 14.57 45.43 1.90
8879 9628 4.655963 ACCTGCATACTTTGACAACTCAT 58.344 39.130 0.00 0.00 0.00 2.90
8902 9651 0.978146 AGGATGAGGACGAAGGGGTG 60.978 60.000 0.00 0.00 0.00 4.61
8903 9652 0.252742 AAGGATGAGGACGAAGGGGT 60.253 55.000 0.00 0.00 0.00 4.95
8911 9660 4.521146 ACATGATTGTGAAGGATGAGGAC 58.479 43.478 0.00 0.00 33.85 3.85
8912 9661 4.849813 ACATGATTGTGAAGGATGAGGA 57.150 40.909 0.00 0.00 33.85 3.71
9033 9783 2.492025 AGGATGTGGAGAGGGCATTTA 58.508 47.619 0.00 0.00 0.00 1.40
9034 9784 1.302907 AGGATGTGGAGAGGGCATTT 58.697 50.000 0.00 0.00 0.00 2.32
9055 9805 4.651994 CACAAGCGCAAAAAGATACTAGG 58.348 43.478 11.47 0.00 0.00 3.02
9108 9858 4.124238 GGCGTTTGTGAAGGCTATATACA 58.876 43.478 0.00 0.00 44.05 2.29
9117 9867 4.038080 GGGCGGCGTTTGTGAAGG 62.038 66.667 9.37 0.00 0.00 3.46
9129 9879 3.139077 GGTAACTATTCTCAATGGGCGG 58.861 50.000 0.00 0.00 0.00 6.13
9146 9896 9.161629 CATGTGATACTACTTTGTTGATGGTAA 57.838 33.333 0.00 0.00 0.00 2.85
9168 9918 3.188159 ACGGTCACAACTACAACATGT 57.812 42.857 0.00 0.00 0.00 3.21
9190 9940 1.495584 CGGCGTGCAACTACACTGTT 61.496 55.000 0.00 0.00 38.45 3.16
9230 9980 3.323691 TGACGATCTCCTTTGTCCAAGAA 59.676 43.478 0.00 0.00 33.80 2.52
9251 10001 2.286242 GCGATGACATCAATGTGCTCTG 60.286 50.000 15.58 0.00 41.95 3.35
9252 10002 1.938577 GCGATGACATCAATGTGCTCT 59.061 47.619 15.58 0.00 41.95 4.09
9283 10033 4.662468 TTAACATGCTTTCTTTGGCACA 57.338 36.364 0.00 0.00 41.39 4.57
9301 10051 7.603404 CAGTGGCATCAAAAGAATTGGATTTAA 59.397 33.333 0.00 0.00 0.00 1.52
9302 10052 7.098477 CAGTGGCATCAAAAGAATTGGATTTA 58.902 34.615 0.00 0.00 0.00 1.40
9311 10061 5.068987 ACTTAAAGCAGTGGCATCAAAAGAA 59.931 36.000 0.00 0.00 44.61 2.52
9314 10064 4.935352 ACTTAAAGCAGTGGCATCAAAA 57.065 36.364 0.00 0.00 44.61 2.44
9339 10089 6.521162 ACAATAAAACTACCCCAAAGCTTTG 58.479 36.000 28.69 28.69 37.90 2.77
9340 10090 6.325286 TGACAATAAAACTACCCCAAAGCTTT 59.675 34.615 5.69 5.69 0.00 3.51
9341 10091 5.836358 TGACAATAAAACTACCCCAAAGCTT 59.164 36.000 0.00 0.00 0.00 3.74
9342 10092 5.390387 TGACAATAAAACTACCCCAAAGCT 58.610 37.500 0.00 0.00 0.00 3.74
9343 10093 5.715434 TGACAATAAAACTACCCCAAAGC 57.285 39.130 0.00 0.00 0.00 3.51
9344 10094 7.039363 TCCATTGACAATAAAACTACCCCAAAG 60.039 37.037 0.00 0.00 0.00 2.77
9345 10095 6.782988 TCCATTGACAATAAAACTACCCCAAA 59.217 34.615 0.00 0.00 0.00 3.28
9346 10096 6.315714 TCCATTGACAATAAAACTACCCCAA 58.684 36.000 0.00 0.00 0.00 4.12
9347 10097 5.893500 TCCATTGACAATAAAACTACCCCA 58.106 37.500 0.00 0.00 0.00 4.96
9348 10098 6.682861 GCATCCATTGACAATAAAACTACCCC 60.683 42.308 0.00 0.00 0.00 4.95
9349 10099 6.127479 TGCATCCATTGACAATAAAACTACCC 60.127 38.462 0.00 0.00 0.00 3.69
9350 10100 6.862209 TGCATCCATTGACAATAAAACTACC 58.138 36.000 0.00 0.00 0.00 3.18
9351 10101 8.931385 ATTGCATCCATTGACAATAAAACTAC 57.069 30.769 0.00 0.00 33.31 2.73
9352 10102 8.747471 TGATTGCATCCATTGACAATAAAACTA 58.253 29.630 0.00 0.00 34.41 2.24
9353 10103 7.613585 TGATTGCATCCATTGACAATAAAACT 58.386 30.769 0.00 0.00 34.41 2.66
9354 10104 7.464977 GCTGATTGCATCCATTGACAATAAAAC 60.465 37.037 0.00 0.00 42.31 2.43
9355 10105 6.535865 GCTGATTGCATCCATTGACAATAAAA 59.464 34.615 0.00 0.00 42.31 1.52
9356 10106 6.044046 GCTGATTGCATCCATTGACAATAAA 58.956 36.000 0.00 0.00 42.31 1.40
9357 10107 5.361571 AGCTGATTGCATCCATTGACAATAA 59.638 36.000 0.00 0.00 45.94 1.40
9358 10108 4.891168 AGCTGATTGCATCCATTGACAATA 59.109 37.500 0.00 0.00 45.94 1.90
9359 10109 3.704566 AGCTGATTGCATCCATTGACAAT 59.295 39.130 0.00 0.00 45.94 2.71
9360 10110 3.093814 AGCTGATTGCATCCATTGACAA 58.906 40.909 0.00 0.00 45.94 3.18
9361 10111 2.730382 AGCTGATTGCATCCATTGACA 58.270 42.857 0.00 0.00 45.94 3.58
9362 10112 4.906065 TTAGCTGATTGCATCCATTGAC 57.094 40.909 0.00 0.00 45.94 3.18
9363 10113 4.201940 CGTTTAGCTGATTGCATCCATTGA 60.202 41.667 0.00 0.00 45.94 2.57
9364 10114 4.039703 CGTTTAGCTGATTGCATCCATTG 58.960 43.478 0.00 0.00 45.94 2.82
9365 10115 3.947196 TCGTTTAGCTGATTGCATCCATT 59.053 39.130 0.00 0.00 45.94 3.16
9366 10116 3.544684 TCGTTTAGCTGATTGCATCCAT 58.455 40.909 0.00 0.00 45.94 3.41
9367 10117 2.938451 CTCGTTTAGCTGATTGCATCCA 59.062 45.455 0.00 0.00 45.94 3.41
9368 10118 2.939103 ACTCGTTTAGCTGATTGCATCC 59.061 45.455 0.00 0.00 45.94 3.51
9369 10119 5.914085 ATACTCGTTTAGCTGATTGCATC 57.086 39.130 0.00 0.00 45.94 3.91
9370 10120 5.696724 GGTATACTCGTTTAGCTGATTGCAT 59.303 40.000 2.25 0.00 45.94 3.96
9371 10121 5.047847 GGTATACTCGTTTAGCTGATTGCA 58.952 41.667 2.25 0.00 45.94 4.08
9372 10122 5.175856 CAGGTATACTCGTTTAGCTGATTGC 59.824 44.000 16.49 0.00 41.70 3.56
9373 10123 6.504398 TCAGGTATACTCGTTTAGCTGATTG 58.496 40.000 18.71 2.98 42.38 2.67
9374 10124 6.546403 TCTCAGGTATACTCGTTTAGCTGATT 59.454 38.462 21.15 0.00 44.38 2.57
9375 10125 6.062749 TCTCAGGTATACTCGTTTAGCTGAT 58.937 40.000 21.15 0.00 44.38 2.90
9376 10126 5.434408 TCTCAGGTATACTCGTTTAGCTGA 58.566 41.667 20.27 20.27 43.79 4.26
9377 10127 5.752892 TCTCAGGTATACTCGTTTAGCTG 57.247 43.478 15.77 15.77 41.04 4.24
9378 10128 6.016108 GGATTCTCAGGTATACTCGTTTAGCT 60.016 42.308 2.25 0.00 0.00 3.32
9379 10129 6.016108 AGGATTCTCAGGTATACTCGTTTAGC 60.016 42.308 2.25 0.00 0.00 3.09
9380 10130 7.446013 AGAGGATTCTCAGGTATACTCGTTTAG 59.554 40.741 3.21 0.00 42.34 1.85
9381 10131 7.288560 AGAGGATTCTCAGGTATACTCGTTTA 58.711 38.462 3.21 0.00 42.34 2.01
9382 10132 6.130569 AGAGGATTCTCAGGTATACTCGTTT 58.869 40.000 3.21 0.00 42.34 3.60
9383 10133 5.697067 AGAGGATTCTCAGGTATACTCGTT 58.303 41.667 3.21 0.00 42.34 3.85
9384 10134 5.313280 AGAGGATTCTCAGGTATACTCGT 57.687 43.478 3.21 0.00 42.34 4.18
9385 10135 5.765677 TCAAGAGGATTCTCAGGTATACTCG 59.234 44.000 3.21 0.00 42.34 4.18
9386 10136 7.601856 CATCAAGAGGATTCTCAGGTATACTC 58.398 42.308 3.21 0.00 42.34 2.59
9387 10137 6.014669 GCATCAAGAGGATTCTCAGGTATACT 60.015 42.308 3.21 0.00 42.34 2.12
9388 10138 6.014669 AGCATCAAGAGGATTCTCAGGTATAC 60.015 42.308 3.21 0.00 42.34 1.47
9389 10139 6.080682 AGCATCAAGAGGATTCTCAGGTATA 58.919 40.000 3.21 0.00 42.34 1.47
9390 10140 4.906664 AGCATCAAGAGGATTCTCAGGTAT 59.093 41.667 3.21 0.00 42.34 2.73
9391 10141 4.293494 AGCATCAAGAGGATTCTCAGGTA 58.707 43.478 3.21 0.00 42.34 3.08
9392 10142 3.113824 AGCATCAAGAGGATTCTCAGGT 58.886 45.455 3.21 0.00 42.34 4.00
9393 10143 3.494749 GGAGCATCAAGAGGATTCTCAGG 60.495 52.174 3.21 0.00 44.92 3.86
9394 10144 3.134262 TGGAGCATCAAGAGGATTCTCAG 59.866 47.826 3.21 0.00 44.92 3.35
9395 10145 3.109928 TGGAGCATCAAGAGGATTCTCA 58.890 45.455 3.21 0.00 44.92 3.27
9396 10146 3.834489 TGGAGCATCAAGAGGATTCTC 57.166 47.619 0.00 0.00 43.14 2.87
9397 10147 4.792513 ATTGGAGCATCAAGAGGATTCT 57.207 40.909 0.00 0.00 36.25 2.40
9398 10148 4.499357 GCAATTGGAGCATCAAGAGGATTC 60.499 45.833 7.72 0.00 36.25 2.52
9399 10149 3.383825 GCAATTGGAGCATCAAGAGGATT 59.616 43.478 7.72 0.00 36.25 3.01
9400 10150 2.957006 GCAATTGGAGCATCAAGAGGAT 59.043 45.455 7.72 0.00 36.25 3.24
9401 10151 2.372264 GCAATTGGAGCATCAAGAGGA 58.628 47.619 7.72 0.00 36.25 3.71
9402 10152 1.407979 GGCAATTGGAGCATCAAGAGG 59.592 52.381 7.72 0.00 36.25 3.69
9403 10153 2.097036 TGGCAATTGGAGCATCAAGAG 58.903 47.619 7.72 0.00 36.25 2.85
9404 10154 2.219080 TGGCAATTGGAGCATCAAGA 57.781 45.000 7.72 0.00 36.25 3.02
9405 10155 2.028839 TGTTGGCAATTGGAGCATCAAG 60.029 45.455 1.92 0.00 36.25 3.02
9406 10156 1.969208 TGTTGGCAATTGGAGCATCAA 59.031 42.857 1.92 0.00 36.25 2.57
9407 10157 1.630223 TGTTGGCAATTGGAGCATCA 58.370 45.000 1.92 0.00 36.25 3.07
9408 10158 2.747396 TTGTTGGCAATTGGAGCATC 57.253 45.000 1.92 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.