Multiple sequence alignment - TraesCS4D01G246700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G246700 chr4D 100.000 8772 0 0 1 8772 415303185 415294414 0.000000e+00 16199.0
1 TraesCS4D01G246700 chr4A 95.164 4115 135 20 3650 7743 48294021 48298092 0.000000e+00 6438.0
2 TraesCS4D01G246700 chr4A 95.033 2718 101 17 969 3669 48289371 48292071 0.000000e+00 4241.0
3 TraesCS4D01G246700 chr4A 92.946 482 19 10 8250 8718 48298522 48299001 0.000000e+00 688.0
4 TraesCS4D01G246700 chr4A 81.890 127 15 3 15 140 48288972 48289091 5.600000e-17 100.0
5 TraesCS4D01G246700 chr4A 92.754 69 4 1 905 972 48289249 48289317 2.020000e-16 99.0
6 TraesCS4D01G246700 chr4A 94.286 35 1 1 1018 1051 48289334 48289368 1.600000e-02 52.8
7 TraesCS4D01G246700 chr4B 94.437 3146 108 20 4644 7745 512169817 512166695 0.000000e+00 4778.0
8 TraesCS4D01G246700 chr4B 96.273 1905 61 8 2713 4612 512171709 512169810 0.000000e+00 3116.0
9 TraesCS4D01G246700 chr4B 95.709 1072 26 8 1669 2732 512172948 512171889 0.000000e+00 1707.0
10 TraesCS4D01G246700 chr4B 91.209 637 33 12 972 1586 512173956 512173321 0.000000e+00 845.0
11 TraesCS4D01G246700 chr4B 91.573 534 21 14 8250 8772 512166412 512165892 0.000000e+00 715.0
12 TraesCS4D01G246700 chr4B 83.077 195 17 4 2 194 512174254 512174074 7.050000e-36 163.0
13 TraesCS4D01G246700 chr4B 92.188 64 5 0 909 972 512174078 512174015 3.370000e-14 91.6
14 TraesCS4D01G246700 chr2A 84.569 661 89 7 259 911 2742398 2741743 2.060000e-180 643.0
15 TraesCS4D01G246700 chr7A 84.418 661 91 7 260 910 142951038 142950380 2.670000e-179 640.0
16 TraesCS4D01G246700 chr7A 84.227 653 88 8 260 901 510900606 510901254 9.670000e-174 621.0
17 TraesCS4D01G246700 chr6A 85.016 634 84 6 286 911 497996921 497996291 1.240000e-177 634.0
18 TraesCS4D01G246700 chr6A 84.438 649 89 8 260 901 608656639 608655996 5.780000e-176 628.0
19 TraesCS4D01G246700 chr1D 84.639 651 82 10 263 904 272536520 272535879 4.470000e-177 632.0
20 TraesCS4D01G246700 chr1D 83.538 650 89 10 260 901 80965414 80966053 7.580000e-165 592.0
21 TraesCS4D01G246700 chr3B 83.920 653 90 7 260 901 186089046 186089694 2.090000e-170 610.0
22 TraesCS4D01G246700 chr3B 83.767 653 92 6 260 901 184957543 184958192 2.710000e-169 606.0
23 TraesCS4D01G246700 chr3B 84.916 179 23 2 1451 1625 754371739 754371917 2.520000e-40 178.0
24 TraesCS4D01G246700 chr3A 84.000 450 49 13 1389 1828 83691149 83691585 2.280000e-110 411.0
25 TraesCS4D01G246700 chr1B 82.785 395 36 18 1389 1766 179973723 179974102 3.050000e-84 324.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G246700 chr4D 415294414 415303185 8771 True 16199.000000 16199 100.000000 1 8772 1 chr4D.!!$R1 8771
1 TraesCS4D01G246700 chr4A 48288972 48299001 10029 False 1936.466667 6438 92.012167 15 8718 6 chr4A.!!$F1 8703
2 TraesCS4D01G246700 chr4B 512165892 512174254 8362 True 1630.800000 4778 92.066571 2 8772 7 chr4B.!!$R1 8770
3 TraesCS4D01G246700 chr2A 2741743 2742398 655 True 643.000000 643 84.569000 259 911 1 chr2A.!!$R1 652
4 TraesCS4D01G246700 chr7A 142950380 142951038 658 True 640.000000 640 84.418000 260 910 1 chr7A.!!$R1 650
5 TraesCS4D01G246700 chr7A 510900606 510901254 648 False 621.000000 621 84.227000 260 901 1 chr7A.!!$F1 641
6 TraesCS4D01G246700 chr6A 497996291 497996921 630 True 634.000000 634 85.016000 286 911 1 chr6A.!!$R1 625
7 TraesCS4D01G246700 chr6A 608655996 608656639 643 True 628.000000 628 84.438000 260 901 1 chr6A.!!$R2 641
8 TraesCS4D01G246700 chr1D 272535879 272536520 641 True 632.000000 632 84.639000 263 904 1 chr1D.!!$R1 641
9 TraesCS4D01G246700 chr1D 80965414 80966053 639 False 592.000000 592 83.538000 260 901 1 chr1D.!!$F1 641
10 TraesCS4D01G246700 chr3B 186089046 186089694 648 False 610.000000 610 83.920000 260 901 1 chr3B.!!$F2 641
11 TraesCS4D01G246700 chr3B 184957543 184958192 649 False 606.000000 606 83.767000 260 901 1 chr3B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 627 0.104304 GTCCCGATGGTGCGTCTAAT 59.896 55.000 0.00 0.0 0.00 1.73 F
1019 1218 0.039035 CCCAAGTCGATTTTCCCCCA 59.961 55.000 0.00 0.0 0.00 4.96 F
1026 1225 0.746659 CGATTTTCCCCCAATCCAGC 59.253 55.000 0.00 0.0 0.00 4.85 F
1103 1303 0.883833 GTCCGGTTCGTCTCAACCTA 59.116 55.000 0.00 0.0 43.43 3.08 F
2496 3005 1.351017 TGCAAGGGTCAGGACTTAAGG 59.649 52.381 7.53 0.0 0.00 2.69 F
3356 4068 1.203038 TCATTGGCTCCTTTTGCTGGA 60.203 47.619 0.00 0.0 0.00 3.86 F
4014 6698 1.087501 CTGTTCCTTTTAGCGCCTCC 58.912 55.000 2.29 0.0 0.00 4.30 F
5145 7830 1.508088 CAGCAAATCGTGGGGCTTC 59.492 57.895 0.00 0.0 33.60 3.86 F
6376 9069 0.958876 TGCCAGCATGCAGACTTCAG 60.959 55.000 21.98 0.0 36.04 3.02 F
7497 10211 0.178992 CCAGTTCAGGGCAGAAACCA 60.179 55.000 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 2319 0.385473 CACGGTCACGATTGTTTGGC 60.385 55.000 0.00 0.00 44.60 4.52 R
2368 2871 3.698539 TGTTGCTGAGTCCAATTTGACAA 59.301 39.130 11.85 0.00 37.73 3.18 R
2386 2889 6.402875 CCATCAACATGTCTGTGATAGTGTTG 60.403 42.308 10.44 9.14 44.57 3.33 R
3031 3739 1.729131 CAAATGCCGTGAACGCACC 60.729 57.895 0.00 0.00 42.09 5.01 R
3741 6424 2.019984 GGGTGCTTCAGAATCATGGAC 58.980 52.381 0.00 0.00 0.00 4.02 R
5094 7779 0.546598 GATCAGGTTACTGGGTGGGG 59.453 60.000 0.00 0.00 44.99 4.96 R
5767 8453 5.721232 ACTCTGTAGGTGCTACAATGTTAC 58.279 41.667 0.00 0.00 44.80 2.50 R
7106 9819 0.184933 GTGGGGGTGGCATGCTATTA 59.815 55.000 18.92 0.00 0.00 0.98 R
7747 10478 0.034477 ACAAGTAATTGGGGGCGGAG 60.034 55.000 7.93 0.00 0.00 4.63 R
8694 11595 0.103026 TATCAGCAGCTACAGTGGCG 59.897 55.000 2.82 0.01 34.52 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.687493 GTGGGTGGAGGAGGAGGAG 60.687 68.421 0.00 0.00 0.00 3.69
49 50 1.075600 GGTGGAGGAGGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
50 51 1.075600 GTGGAGGAGGAGGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
51 52 1.230650 TGGAGGAGGAGGAGGAGGA 60.231 63.158 0.00 0.00 0.00 3.71
52 53 0.855855 TGGAGGAGGAGGAGGAGGAA 60.856 60.000 0.00 0.00 0.00 3.36
53 54 0.105709 GGAGGAGGAGGAGGAGGAAG 60.106 65.000 0.00 0.00 0.00 3.46
54 55 0.930726 GAGGAGGAGGAGGAGGAAGA 59.069 60.000 0.00 0.00 0.00 2.87
58 59 2.359781 GGAGGAGGAGGAGGAAGAATGA 60.360 54.545 0.00 0.00 0.00 2.57
66 67 7.284261 GGAGGAGGAGGAAGAATGATTAAAAAG 59.716 40.741 0.00 0.00 0.00 2.27
68 69 7.831690 AGGAGGAGGAAGAATGATTAAAAAGAC 59.168 37.037 0.00 0.00 0.00 3.01
195 310 8.743714 AGCGAAAAAGAATGAAAGGAAAGATAT 58.256 29.630 0.00 0.00 0.00 1.63
196 311 9.358872 GCGAAAAAGAATGAAAGGAAAGATATT 57.641 29.630 0.00 0.00 0.00 1.28
220 335 8.877808 TTGATAGCTAATTACACTCTCATGTG 57.122 34.615 0.00 0.00 43.07 3.21
221 336 7.436933 TGATAGCTAATTACACTCTCATGTGG 58.563 38.462 0.00 0.00 41.84 4.17
222 337 5.683876 AGCTAATTACACTCTCATGTGGT 57.316 39.130 0.00 0.00 41.84 4.16
223 338 5.423015 AGCTAATTACACTCTCATGTGGTG 58.577 41.667 12.11 12.11 41.84 4.17
224 339 5.046304 AGCTAATTACACTCTCATGTGGTGT 60.046 40.000 19.06 19.06 44.75 4.16
225 340 5.643777 GCTAATTACACTCTCATGTGGTGTT 59.356 40.000 19.81 10.22 42.92 3.32
226 341 6.816640 GCTAATTACACTCTCATGTGGTGTTA 59.183 38.462 19.81 14.47 42.92 2.41
227 342 7.495934 GCTAATTACACTCTCATGTGGTGTTAT 59.504 37.037 19.81 15.58 42.92 1.89
228 343 9.383519 CTAATTACACTCTCATGTGGTGTTATT 57.616 33.333 22.32 22.32 42.10 1.40
229 344 8.635765 AATTACACTCTCATGTGGTGTTATTT 57.364 30.769 19.81 12.20 38.89 1.40
230 345 5.947228 ACACTCTCATGTGGTGTTATTTG 57.053 39.130 13.06 0.00 40.68 2.32
231 346 5.620206 ACACTCTCATGTGGTGTTATTTGA 58.380 37.500 13.06 0.00 40.68 2.69
232 347 6.240894 ACACTCTCATGTGGTGTTATTTGAT 58.759 36.000 13.06 0.00 40.68 2.57
233 348 6.716628 ACACTCTCATGTGGTGTTATTTGATT 59.283 34.615 13.06 0.00 40.68 2.57
234 349 7.025365 CACTCTCATGTGGTGTTATTTGATTG 58.975 38.462 0.00 0.00 34.56 2.67
235 350 6.716628 ACTCTCATGTGGTGTTATTTGATTGT 59.283 34.615 0.00 0.00 0.00 2.71
236 351 7.882791 ACTCTCATGTGGTGTTATTTGATTGTA 59.117 33.333 0.00 0.00 0.00 2.41
237 352 8.806429 TCTCATGTGGTGTTATTTGATTGTAT 57.194 30.769 0.00 0.00 0.00 2.29
238 353 9.898152 TCTCATGTGGTGTTATTTGATTGTATA 57.102 29.630 0.00 0.00 0.00 1.47
248 363 9.116067 TGTTATTTGATTGTATAACACTAGGGC 57.884 33.333 0.00 0.00 40.45 5.19
249 364 9.338622 GTTATTTGATTGTATAACACTAGGGCT 57.661 33.333 0.00 0.00 37.25 5.19
250 365 9.555727 TTATTTGATTGTATAACACTAGGGCTC 57.444 33.333 0.00 0.00 0.00 4.70
251 366 6.553953 TTGATTGTATAACACTAGGGCTCA 57.446 37.500 0.00 0.00 0.00 4.26
252 367 6.747414 TGATTGTATAACACTAGGGCTCAT 57.253 37.500 0.00 0.00 0.00 2.90
253 368 7.849322 TGATTGTATAACACTAGGGCTCATA 57.151 36.000 0.00 0.00 0.00 2.15
254 369 8.257602 TGATTGTATAACACTAGGGCTCATAA 57.742 34.615 0.00 0.00 0.00 1.90
255 370 8.367911 TGATTGTATAACACTAGGGCTCATAAG 58.632 37.037 0.00 0.00 0.00 1.73
256 371 6.665992 TGTATAACACTAGGGCTCATAAGG 57.334 41.667 0.00 0.00 0.00 2.69
295 410 4.593206 TCCACAAGAAAAGCTCTTCTCCTA 59.407 41.667 2.00 0.00 42.84 2.94
333 449 3.432186 CCGGTCTGCCTTATCTTTGATGA 60.432 47.826 0.00 0.00 0.00 2.92
365 481 3.532155 AGGTGCGGAGGATCTCGC 61.532 66.667 17.09 17.09 28.04 5.03
399 515 4.500125 GGAGGGACCCCATTCTCA 57.500 61.111 7.00 0.00 38.92 3.27
413 531 5.126061 CCCCATTCTCATTCTTGTTAGGTTG 59.874 44.000 0.00 0.00 0.00 3.77
463 590 7.442656 CGATGTCCCTTAGTAGGAATAATGTT 58.557 38.462 0.00 0.00 45.05 2.71
499 626 1.514087 GTCCCGATGGTGCGTCTAA 59.486 57.895 0.00 0.00 0.00 2.10
500 627 0.104304 GTCCCGATGGTGCGTCTAAT 59.896 55.000 0.00 0.00 0.00 1.73
524 651 1.179174 TCGGAGAGTGTGTGGAGGTG 61.179 60.000 0.00 0.00 0.00 4.00
551 678 1.341209 CATCGGATCTCGTGGGATTCA 59.659 52.381 0.00 0.00 40.32 2.57
559 686 0.896479 TCGTGGGATTCAGTCGGTGA 60.896 55.000 0.00 0.00 0.00 4.02
587 714 0.404040 GGTGGATCTGTTTGGGTCCA 59.596 55.000 0.00 0.00 38.37 4.02
607 734 3.060473 CCAGTCTTTGTTCGTCTTCGTTC 60.060 47.826 0.00 0.00 38.33 3.95
610 737 1.856597 CTTTGTTCGTCTTCGTTCGGT 59.143 47.619 0.00 0.00 38.33 4.69
656 783 2.753452 TCTACGACTTTCTTCATCGGCT 59.247 45.455 0.00 0.00 40.16 5.52
709 836 3.139077 GGACCTTCACACGATGACTTTT 58.861 45.455 0.00 0.00 36.92 2.27
715 842 4.492791 TCACACGATGACTTTTCGACTA 57.507 40.909 0.00 0.00 39.81 2.59
716 843 4.224433 TCACACGATGACTTTTCGACTAC 58.776 43.478 0.00 0.00 39.81 2.73
720 847 5.125097 ACACGATGACTTTTCGACTACCTAT 59.875 40.000 0.00 0.00 39.81 2.57
734 861 7.092716 TCGACTACCTATTACAACAAGGTTTC 58.907 38.462 0.00 0.00 40.82 2.78
802 930 0.737715 GCTCCAGTGCTTGTAGTCGG 60.738 60.000 0.00 0.00 0.00 4.79
803 931 0.603569 CTCCAGTGCTTGTAGTCGGT 59.396 55.000 0.00 0.00 0.00 4.69
878 1006 9.350357 CTTTGTACTTCCATGATTGAAAATGAG 57.650 33.333 0.00 0.00 0.00 2.90
918 1046 7.403312 TGAAAAACAGAGGAAAGATGAACAA 57.597 32.000 0.00 0.00 0.00 2.83
919 1047 7.835822 TGAAAAACAGAGGAAAGATGAACAAA 58.164 30.769 0.00 0.00 0.00 2.83
920 1048 8.477256 TGAAAAACAGAGGAAAGATGAACAAAT 58.523 29.630 0.00 0.00 0.00 2.32
975 1162 3.292460 TCCAAATTCGTTGACAAAGGGT 58.708 40.909 1.16 0.00 39.87 4.34
1009 1196 1.987855 CCTACCCAGCCCAAGTCGA 60.988 63.158 0.00 0.00 0.00 4.20
1019 1218 0.039035 CCCAAGTCGATTTTCCCCCA 59.961 55.000 0.00 0.00 0.00 4.96
1026 1225 0.746659 CGATTTTCCCCCAATCCAGC 59.253 55.000 0.00 0.00 0.00 4.85
1096 1296 2.675056 CGTCTCGTCCGGTTCGTCT 61.675 63.158 17.62 0.00 0.00 4.18
1103 1303 0.883833 GTCCGGTTCGTCTCAACCTA 59.116 55.000 0.00 0.00 43.43 3.08
1163 1363 1.755783 GCATTTCCAGGGCCTCAGG 60.756 63.158 0.95 2.48 0.00 3.86
1293 1493 2.852075 TCCTTCCACCGTTGGCCT 60.852 61.111 3.32 0.00 43.56 5.19
1294 1494 1.536907 TCCTTCCACCGTTGGCCTA 60.537 57.895 3.32 0.00 43.56 3.93
1543 1753 2.785425 CGCCCCTTATGCTTTGCCC 61.785 63.158 0.00 0.00 0.00 5.36
1630 1840 2.771943 TCTTCCATGATACAGTCCCCAC 59.228 50.000 0.00 0.00 0.00 4.61
1631 1841 1.507140 TCCATGATACAGTCCCCACC 58.493 55.000 0.00 0.00 0.00 4.61
1675 2175 6.369890 GTCTATGTATTATCTGGGCACACATG 59.630 42.308 0.00 0.00 0.00 3.21
1812 2312 4.315803 CAAACACAGGACGAGGTAAATCT 58.684 43.478 0.00 0.00 0.00 2.40
1819 2319 5.103000 CAGGACGAGGTAAATCTGTAACAG 58.897 45.833 0.00 0.00 0.00 3.16
1863 2366 8.469200 TGATGTTCTTCTGTGAAAATCAGTTTT 58.531 29.630 11.81 0.00 42.48 2.43
1897 2400 5.941948 GGTAATAACCGCTTGCTTGATAT 57.058 39.130 0.00 0.00 35.62 1.63
1984 2487 5.003804 GTGTCCACTCATTATTGACTTGGT 58.996 41.667 9.06 0.00 33.93 3.67
1988 2491 5.046878 TCCACTCATTATTGACTTGGTACGT 60.047 40.000 0.00 0.00 33.93 3.57
2083 2586 6.889722 AGAAGCCACTCTATCTACATATCTCC 59.110 42.308 0.00 0.00 0.00 3.71
2322 2825 7.967854 TCTGTTCAATCTTGTTACAAGTTTGTG 59.032 33.333 31.03 23.22 42.31 3.33
2324 2827 7.753132 TGTTCAATCTTGTTACAAGTTTGTGAC 59.247 33.333 31.03 28.71 44.90 3.67
2339 2842 5.820947 AGTTTGTGACTTATTCTCCACGTTT 59.179 36.000 0.00 0.00 33.92 3.60
2347 2850 6.608610 ACTTATTCTCCACGTTTTGTTATGC 58.391 36.000 0.00 0.00 0.00 3.14
2496 3005 1.351017 TGCAAGGGTCAGGACTTAAGG 59.649 52.381 7.53 0.00 0.00 2.69
3031 3739 8.665685 GGAAAACACCTAATAGAACAGTACATG 58.334 37.037 0.00 0.00 0.00 3.21
3056 3767 3.181514 GCGTTCACGGCATTTGTTAGTAT 60.182 43.478 0.81 0.00 40.23 2.12
3057 3768 4.574759 CGTTCACGGCATTTGTTAGTATC 58.425 43.478 0.00 0.00 35.37 2.24
3100 3811 2.622942 TCATCCTTTGCCCGCATTTATC 59.377 45.455 0.00 0.00 0.00 1.75
3235 3947 6.148811 CAGTGTTGATTTTTCGGGTATGTACT 59.851 38.462 0.00 0.00 0.00 2.73
3356 4068 1.203038 TCATTGGCTCCTTTTGCTGGA 60.203 47.619 0.00 0.00 0.00 3.86
3455 4170 6.183360 CGGTAGCCATAAAATAAGGAAAAGCA 60.183 38.462 0.00 0.00 0.00 3.91
3689 6372 9.126151 TGTGAAACTTTTCCTGTGAAATATGTA 57.874 29.630 0.00 0.00 36.00 2.29
3741 6424 6.230472 TGGATGACTTCATACATTTATCCCG 58.770 40.000 0.00 0.00 41.99 5.14
3774 6457 4.555262 TGAAGCACCCGAAAAATTTGATC 58.445 39.130 0.00 0.00 0.00 2.92
3933 6617 6.511282 GCGGGAATCAGCTGTAAAATAGTTAC 60.511 42.308 14.67 0.00 0.00 2.50
4014 6698 1.087501 CTGTTCCTTTTAGCGCCTCC 58.912 55.000 2.29 0.00 0.00 4.30
4188 6872 8.342634 TCTTGTTTTATTTTCCTCTTTGTCGAG 58.657 33.333 0.00 0.00 0.00 4.04
4391 7075 3.366374 GCTGAAGGTTGGTGATTTGTAGC 60.366 47.826 0.00 0.00 0.00 3.58
4397 7081 3.005791 GGTTGGTGATTTGTAGCAGCTTT 59.994 43.478 0.00 0.00 38.88 3.51
4418 7102 7.662669 AGCTTTTGGAAATTTGTATCTTGCAAT 59.337 29.630 0.00 0.00 31.66 3.56
4456 7140 5.220643 CGTAATGTCTATTGCAGCATCACAA 60.221 40.000 0.00 0.00 0.00 3.33
4770 7455 7.223584 TGTGATTCTGTCAGTTTATCCTTTGA 58.776 34.615 0.00 0.00 37.56 2.69
5047 7732 4.591072 GGAGTTACTTCTCCCATATCTGCT 59.409 45.833 1.70 0.00 45.84 4.24
5094 7779 2.618709 CGCCAACTTATTCTGGGATTCC 59.381 50.000 0.00 0.00 32.95 3.01
5145 7830 1.508088 CAGCAAATCGTGGGGCTTC 59.492 57.895 0.00 0.00 33.60 3.86
5767 8453 9.888878 CAGCATGTTATATTAAGAAAGTGATGG 57.111 33.333 0.00 0.00 0.00 3.51
6043 8736 7.881775 ATGTAGGGGAACTTTACATTTCATC 57.118 36.000 0.00 0.00 37.61 2.92
6044 8737 6.785076 TGTAGGGGAACTTTACATTTCATCA 58.215 36.000 0.00 0.00 0.00 3.07
6045 8738 7.410174 TGTAGGGGAACTTTACATTTCATCAT 58.590 34.615 0.00 0.00 0.00 2.45
6099 8792 5.529800 TGATGACTGCCAGATTCACATATTG 59.470 40.000 0.00 0.00 0.00 1.90
6101 8794 5.687780 TGACTGCCAGATTCACATATTGAT 58.312 37.500 0.00 0.00 32.84 2.57
6259 8952 1.443802 TGCAATCGCGATGGTGTTTA 58.556 45.000 24.47 6.42 42.97 2.01
6376 9069 0.958876 TGCCAGCATGCAGACTTCAG 60.959 55.000 21.98 0.00 36.04 3.02
6384 9077 4.634883 AGCATGCAGACTTCAGTAAATGAG 59.365 41.667 21.98 0.00 39.68 2.90
6420 9114 3.173599 CCATACGCTTCAACAAATGCTG 58.826 45.455 0.00 0.00 0.00 4.41
6662 9372 9.582431 AAACACTTAAAAGGAAGCTTTCTTTAC 57.418 29.630 28.93 2.57 33.40 2.01
6686 9396 7.996385 ACTTTCTTAGTTGTACAAACATTGCT 58.004 30.769 10.51 4.66 34.97 3.91
6688 9398 5.757886 TCTTAGTTGTACAAACATTGCTGC 58.242 37.500 10.51 0.00 34.97 5.25
6755 9465 6.801862 GTCATGTTTACTTGTACTGCAATTCC 59.198 38.462 0.00 0.00 36.36 3.01
6820 9530 3.557595 CAGTAGTTGCCGATTTCATCCTC 59.442 47.826 0.00 0.00 0.00 3.71
6828 9538 2.223340 CCGATTTCATCCTCCTTTTGCG 60.223 50.000 0.00 0.00 0.00 4.85
6981 9691 1.601903 TGAACAGTTCATCGGTTGCAC 59.398 47.619 12.24 0.00 34.85 4.57
7046 9756 2.566279 AGATCCACATCCATCTCATCCG 59.434 50.000 0.00 0.00 0.00 4.18
7106 9819 3.457380 AGAACATGTCACTGCCATATCCT 59.543 43.478 0.00 0.00 0.00 3.24
7213 9926 1.685148 CATTCAGCCCTAAAGGAGCC 58.315 55.000 0.00 0.00 38.24 4.70
7215 9928 1.198759 TTCAGCCCTAAAGGAGCCGT 61.199 55.000 0.00 0.00 38.24 5.68
7232 9945 1.880340 GTTGGCGCCTCTGAGATCG 60.880 63.158 29.70 10.21 0.00 3.69
7260 9973 0.536006 GAGTTCTGCTGCACCACCTT 60.536 55.000 0.00 0.00 0.00 3.50
7332 10045 7.559335 AATAGAGGAGCACCATGATATAACA 57.441 36.000 2.07 0.00 38.94 2.41
7338 10051 6.835488 AGGAGCACCATGATATAACATTTTGT 59.165 34.615 2.07 0.00 38.94 2.83
7339 10052 7.998383 AGGAGCACCATGATATAACATTTTGTA 59.002 33.333 2.07 0.00 38.94 2.41
7436 10150 5.738909 CTTATGGACTATGGGGATGATGAC 58.261 45.833 0.00 0.00 0.00 3.06
7439 10153 2.028930 GGACTATGGGGATGATGACGAC 60.029 54.545 0.00 0.00 0.00 4.34
7445 10159 0.311165 GGGATGATGACGACGACGAT 59.689 55.000 15.32 0.00 42.66 3.73
7448 10162 2.302662 GATGATGACGACGACGATGAG 58.697 52.381 15.32 0.00 42.66 2.90
7474 10188 0.251916 CGTGCCTGGAGGGAATACAA 59.748 55.000 0.00 0.00 37.25 2.41
7497 10211 0.178992 CCAGTTCAGGGCAGAAACCA 60.179 55.000 0.00 0.00 0.00 3.67
7502 10216 3.321968 AGTTCAGGGCAGAAACCATTTTC 59.678 43.478 0.00 0.00 41.44 2.29
7510 10224 2.289547 CAGAAACCATTTTCGTCGGTGT 59.710 45.455 0.00 0.00 45.15 4.16
7526 10240 2.263077 GGTGTGAGAATGAGCGTGTAG 58.737 52.381 0.00 0.00 0.00 2.74
7562 10276 3.134985 TGGGTAACACTAGTGCTGTGAAA 59.865 43.478 22.90 0.81 38.65 2.69
7655 10383 9.113838 GTATCAATGTTATCAGGTCAACAGATT 57.886 33.333 0.00 0.00 38.01 2.40
7704 10435 6.770746 TCCCATCTGAAGTACAGTAGTAAC 57.229 41.667 0.00 0.00 45.86 2.50
7705 10436 6.491383 TCCCATCTGAAGTACAGTAGTAACT 58.509 40.000 0.00 0.00 45.86 2.24
7719 10450 6.666546 ACAGTAGTAACTAGCATGGTTCCTTA 59.333 38.462 1.12 0.00 39.78 2.69
7749 10480 8.964476 TTCTTTCAATATGTTGATACTCCCTC 57.036 34.615 5.66 0.00 43.49 4.30
7750 10481 7.509546 TCTTTCAATATGTTGATACTCCCTCC 58.490 38.462 5.66 0.00 43.49 4.30
7751 10482 5.468540 TCAATATGTTGATACTCCCTCCG 57.531 43.478 0.03 0.00 39.36 4.63
7752 10483 3.963428 ATATGTTGATACTCCCTCCGC 57.037 47.619 0.00 0.00 0.00 5.54
7753 10484 0.759346 ATGTTGATACTCCCTCCGCC 59.241 55.000 0.00 0.00 0.00 6.13
7754 10485 1.335132 TGTTGATACTCCCTCCGCCC 61.335 60.000 0.00 0.00 0.00 6.13
7755 10486 1.764854 TTGATACTCCCTCCGCCCC 60.765 63.158 0.00 0.00 0.00 5.80
7756 10487 2.923568 GATACTCCCTCCGCCCCC 60.924 72.222 0.00 0.00 0.00 5.40
7757 10488 3.768833 GATACTCCCTCCGCCCCCA 62.769 68.421 0.00 0.00 0.00 4.96
7758 10489 3.341469 ATACTCCCTCCGCCCCCAA 62.341 63.158 0.00 0.00 0.00 4.12
7759 10490 2.638025 ATACTCCCTCCGCCCCCAAT 62.638 60.000 0.00 0.00 0.00 3.16
7760 10491 2.850851 TACTCCCTCCGCCCCCAATT 62.851 60.000 0.00 0.00 0.00 2.32
7761 10492 2.043098 TCCCTCCGCCCCCAATTA 59.957 61.111 0.00 0.00 0.00 1.40
7762 10493 2.194868 CCCTCCGCCCCCAATTAC 59.805 66.667 0.00 0.00 0.00 1.89
7763 10494 2.383601 CCCTCCGCCCCCAATTACT 61.384 63.158 0.00 0.00 0.00 2.24
7764 10495 1.613061 CCTCCGCCCCCAATTACTT 59.387 57.895 0.00 0.00 0.00 2.24
7765 10496 0.751643 CCTCCGCCCCCAATTACTTG 60.752 60.000 0.00 0.00 0.00 3.16
7766 10497 0.034477 CTCCGCCCCCAATTACTTGT 60.034 55.000 0.00 0.00 0.00 3.16
7767 10498 0.034863 TCCGCCCCCAATTACTTGTC 60.035 55.000 0.00 0.00 0.00 3.18
7768 10499 1.373590 CCGCCCCCAATTACTTGTCG 61.374 60.000 0.00 0.00 0.00 4.35
7769 10500 1.807226 GCCCCCAATTACTTGTCGC 59.193 57.895 0.00 0.00 0.00 5.19
7770 10501 0.963355 GCCCCCAATTACTTGTCGCA 60.963 55.000 0.00 0.00 0.00 5.10
7771 10502 1.094785 CCCCCAATTACTTGTCGCAG 58.905 55.000 0.00 0.00 0.00 5.18
7772 10503 1.339631 CCCCCAATTACTTGTCGCAGA 60.340 52.381 0.00 0.00 0.00 4.26
7773 10504 2.432444 CCCCAATTACTTGTCGCAGAA 58.568 47.619 0.00 0.00 39.69 3.02
7774 10505 2.817258 CCCCAATTACTTGTCGCAGAAA 59.183 45.455 0.00 0.00 39.69 2.52
7775 10506 3.443681 CCCCAATTACTTGTCGCAGAAAT 59.556 43.478 0.00 0.00 39.69 2.17
7776 10507 4.082245 CCCCAATTACTTGTCGCAGAAATT 60.082 41.667 0.00 0.00 39.69 1.82
7777 10508 5.469479 CCCAATTACTTGTCGCAGAAATTT 58.531 37.500 0.00 0.00 39.69 1.82
7778 10509 5.925969 CCCAATTACTTGTCGCAGAAATTTT 59.074 36.000 0.00 0.00 39.69 1.82
7779 10510 6.423604 CCCAATTACTTGTCGCAGAAATTTTT 59.576 34.615 0.00 0.00 39.69 1.94
7780 10511 7.596995 CCCAATTACTTGTCGCAGAAATTTTTA 59.403 33.333 0.00 0.00 39.69 1.52
7781 10512 8.638565 CCAATTACTTGTCGCAGAAATTTTTAG 58.361 33.333 0.00 0.00 39.69 1.85
7782 10513 9.180678 CAATTACTTGTCGCAGAAATTTTTAGT 57.819 29.630 0.00 0.00 39.69 2.24
7783 10514 9.744468 AATTACTTGTCGCAGAAATTTTTAGTT 57.256 25.926 0.00 0.00 39.69 2.24
7784 10515 8.776680 TTACTTGTCGCAGAAATTTTTAGTTC 57.223 30.769 0.00 0.00 39.69 3.01
7785 10516 7.027778 ACTTGTCGCAGAAATTTTTAGTTCT 57.972 32.000 0.00 0.00 39.69 3.01
7786 10517 8.149973 ACTTGTCGCAGAAATTTTTAGTTCTA 57.850 30.769 0.00 0.00 39.69 2.10
7787 10518 8.283291 ACTTGTCGCAGAAATTTTTAGTTCTAG 58.717 33.333 0.00 0.00 39.69 2.43
7788 10519 7.956420 TGTCGCAGAAATTTTTAGTTCTAGA 57.044 32.000 0.00 0.00 39.69 2.43
7789 10520 8.547967 TGTCGCAGAAATTTTTAGTTCTAGAT 57.452 30.769 0.00 0.00 39.69 1.98
7790 10521 9.647797 TGTCGCAGAAATTTTTAGTTCTAGATA 57.352 29.630 0.00 0.00 39.69 1.98
7791 10522 9.903185 GTCGCAGAAATTTTTAGTTCTAGATAC 57.097 33.333 0.00 0.00 39.69 2.24
7792 10523 9.647797 TCGCAGAAATTTTTAGTTCTAGATACA 57.352 29.630 0.00 0.00 32.79 2.29
7815 10546 8.398491 ACATTCAATTCTATCATTTTTGCGAC 57.602 30.769 0.00 0.00 0.00 5.19
7816 10547 8.028354 ACATTCAATTCTATCATTTTTGCGACA 58.972 29.630 0.00 0.00 0.00 4.35
7817 10548 8.862074 CATTCAATTCTATCATTTTTGCGACAA 58.138 29.630 0.00 0.00 0.00 3.18
7818 10549 8.451687 TTCAATTCTATCATTTTTGCGACAAG 57.548 30.769 0.00 0.00 0.00 3.16
7819 10550 7.592938 TCAATTCTATCATTTTTGCGACAAGT 58.407 30.769 0.00 0.00 0.00 3.16
7820 10551 8.726068 TCAATTCTATCATTTTTGCGACAAGTA 58.274 29.630 0.00 0.00 0.00 2.24
7821 10552 9.340695 CAATTCTATCATTTTTGCGACAAGTAA 57.659 29.630 0.00 0.00 0.00 2.24
7824 10555 9.906660 TTCTATCATTTTTGCGACAAGTAATTT 57.093 25.926 0.00 0.00 0.00 1.82
7827 10558 8.687824 ATCATTTTTGCGACAAGTAATTTAGG 57.312 30.769 0.00 0.00 0.00 2.69
7828 10559 7.877003 TCATTTTTGCGACAAGTAATTTAGGA 58.123 30.769 0.00 0.00 0.00 2.94
7829 10560 7.806014 TCATTTTTGCGACAAGTAATTTAGGAC 59.194 33.333 0.00 0.00 0.00 3.85
7830 10561 5.616488 TTTGCGACAAGTAATTTAGGACC 57.384 39.130 0.00 0.00 0.00 4.46
7831 10562 3.255725 TGCGACAAGTAATTTAGGACCG 58.744 45.455 0.00 0.00 0.00 4.79
7832 10563 3.056678 TGCGACAAGTAATTTAGGACCGA 60.057 43.478 0.00 0.00 0.00 4.69
7833 10564 3.550678 GCGACAAGTAATTTAGGACCGAG 59.449 47.826 0.00 0.00 0.00 4.63
7834 10565 4.110482 CGACAAGTAATTTAGGACCGAGG 58.890 47.826 0.00 0.00 0.00 4.63
7835 10566 4.439968 GACAAGTAATTTAGGACCGAGGG 58.560 47.826 0.00 0.00 0.00 4.30
7836 10567 4.098894 ACAAGTAATTTAGGACCGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
7837 10568 4.161754 ACAAGTAATTTAGGACCGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
7838 10569 3.991683 AGTAATTTAGGACCGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
7856 10587 3.933332 GGAGTATGTGTTTAGGTGCTGTC 59.067 47.826 0.00 0.00 0.00 3.51
7873 10604 3.617531 GCTGTCAGCATTGTAGTGTACCT 60.618 47.826 20.16 0.00 41.89 3.08
7888 10625 8.776470 TGTAGTGTACCTTTTTATAAACTGTGC 58.224 33.333 0.00 0.58 0.00 4.57
7893 10730 5.997385 ACCTTTTTATAAACTGTGCACTCG 58.003 37.500 19.41 11.59 0.00 4.18
7897 10734 1.350193 ATAAACTGTGCACTCGCTCG 58.650 50.000 19.41 2.17 39.64 5.03
7903 10740 3.303135 TGCACTCGCTCGGTTCCT 61.303 61.111 0.00 0.00 39.64 3.36
7909 10746 3.799232 GCACTCGCTCGGTTCCTAAATAT 60.799 47.826 0.00 0.00 34.30 1.28
7915 10752 4.557690 CGCTCGGTTCCTAAATATATGACG 59.442 45.833 0.00 0.00 0.00 4.35
7916 10753 5.467705 GCTCGGTTCCTAAATATATGACGT 58.532 41.667 0.00 0.00 0.00 4.34
7917 10754 5.924825 GCTCGGTTCCTAAATATATGACGTT 59.075 40.000 0.00 0.00 0.00 3.99
7918 10755 6.423001 GCTCGGTTCCTAAATATATGACGTTT 59.577 38.462 0.00 0.00 0.00 3.60
7919 10756 7.042254 GCTCGGTTCCTAAATATATGACGTTTT 60.042 37.037 0.00 0.00 0.00 2.43
7920 10757 8.133754 TCGGTTCCTAAATATATGACGTTTTG 57.866 34.615 0.00 0.00 0.00 2.44
7921 10758 7.225145 TCGGTTCCTAAATATATGACGTTTTGG 59.775 37.037 0.00 0.00 0.00 3.28
7922 10759 7.136772 GGTTCCTAAATATATGACGTTTTGGC 58.863 38.462 0.00 0.00 30.97 4.52
7923 10760 7.201750 GGTTCCTAAATATATGACGTTTTGGCA 60.202 37.037 0.00 0.00 30.97 4.92
7924 10761 7.490962 TCCTAAATATATGACGTTTTGGCAG 57.509 36.000 0.00 0.00 30.97 4.85
7925 10762 6.017440 TCCTAAATATATGACGTTTTGGCAGC 60.017 38.462 0.00 0.00 30.97 5.25
7931 10768 4.519540 ATGACGTTTTGGCAGCTTAAAT 57.480 36.364 0.00 0.00 0.00 1.40
7933 10770 4.047822 TGACGTTTTGGCAGCTTAAATTG 58.952 39.130 0.00 0.00 0.00 2.32
7935 10772 4.688021 ACGTTTTGGCAGCTTAAATTGAA 58.312 34.783 0.00 0.00 0.00 2.69
7936 10773 5.112686 ACGTTTTGGCAGCTTAAATTGAAA 58.887 33.333 0.00 0.00 0.00 2.69
7938 10775 6.259829 ACGTTTTGGCAGCTTAAATTGAAATT 59.740 30.769 0.00 0.00 0.00 1.82
7939 10776 6.574462 CGTTTTGGCAGCTTAAATTGAAATTG 59.426 34.615 0.00 0.00 0.00 2.32
7940 10777 5.610235 TTGGCAGCTTAAATTGAAATTGC 57.390 34.783 0.00 3.37 0.00 3.56
7941 10778 4.002316 TGGCAGCTTAAATTGAAATTGCC 58.998 39.130 17.52 17.52 38.99 4.52
7942 10779 4.002316 GGCAGCTTAAATTGAAATTGCCA 58.998 39.130 18.71 0.00 38.46 4.92
7943 10780 4.455190 GGCAGCTTAAATTGAAATTGCCAA 59.545 37.500 18.71 0.00 38.46 4.52
7944 10781 5.048852 GGCAGCTTAAATTGAAATTGCCAAA 60.049 36.000 18.71 0.00 38.46 3.28
7945 10782 6.437094 GCAGCTTAAATTGAAATTGCCAAAA 58.563 32.000 0.00 0.00 0.00 2.44
7946 10783 6.360414 GCAGCTTAAATTGAAATTGCCAAAAC 59.640 34.615 0.00 0.00 0.00 2.43
7947 10784 6.857451 CAGCTTAAATTGAAATTGCCAAAACC 59.143 34.615 0.00 0.00 0.00 3.27
7948 10785 6.772233 AGCTTAAATTGAAATTGCCAAAACCT 59.228 30.769 0.00 0.00 0.00 3.50
7949 10786 7.936301 AGCTTAAATTGAAATTGCCAAAACCTA 59.064 29.630 0.00 0.00 0.00 3.08
7950 10787 8.229811 GCTTAAATTGAAATTGCCAAAACCTAG 58.770 33.333 0.00 0.00 0.00 3.02
7951 10788 9.271828 CTTAAATTGAAATTGCCAAAACCTAGT 57.728 29.630 0.00 0.00 0.00 2.57
7963 10800 7.863722 TGCCAAAACCTAGTATATTAGGAACA 58.136 34.615 24.07 11.38 42.39 3.18
7979 10816 8.798975 ATTAGGAACAGAGGGAGTATAATCAA 57.201 34.615 2.18 0.00 0.00 2.57
7980 10817 8.798975 TTAGGAACAGAGGGAGTATAATCAAT 57.201 34.615 2.18 0.00 0.00 2.57
7981 10818 9.892444 TTAGGAACAGAGGGAGTATAATCAATA 57.108 33.333 2.18 0.00 0.00 1.90
7982 10819 8.429237 AGGAACAGAGGGAGTATAATCAATAG 57.571 38.462 2.18 0.00 0.00 1.73
7983 10820 8.013667 AGGAACAGAGGGAGTATAATCAATAGT 58.986 37.037 2.18 0.00 0.00 2.12
7984 10821 8.308207 GGAACAGAGGGAGTATAATCAATAGTC 58.692 40.741 2.18 0.00 39.08 2.59
7985 10822 9.084533 GAACAGAGGGAGTATAATCAATAGTCT 57.915 37.037 2.18 0.00 39.55 3.24
7986 10823 9.440761 AACAGAGGGAGTATAATCAATAGTCTT 57.559 33.333 2.18 0.00 39.55 3.01
7987 10824 9.440761 ACAGAGGGAGTATAATCAATAGTCTTT 57.559 33.333 2.18 0.00 39.55 2.52
8030 10867 6.373186 TCAATATAGTCTACTCACACACGG 57.627 41.667 0.00 0.00 0.00 4.94
8031 10868 5.884232 TCAATATAGTCTACTCACACACGGT 59.116 40.000 0.00 0.00 0.00 4.83
8041 10878 3.663176 CACACGGTGGCTGCCTTG 61.663 66.667 21.03 13.45 34.39 3.61
8086 10967 2.607771 CCTCTGTTTGCCGTTTGGAATG 60.608 50.000 0.00 0.00 37.49 2.67
8090 10971 0.385751 TTTGCCGTTTGGAATGCGAA 59.614 45.000 0.00 0.00 37.49 4.70
8100 10981 0.026285 GGAATGCGAATTCGACACGG 59.974 55.000 31.01 1.51 43.02 4.94
8137 11018 7.165485 TCAATTCCAAGACGGATAAAGAAAGA 58.835 34.615 0.00 0.00 45.80 2.52
8157 11038 0.940519 TTTACGCGACCCTGAACACG 60.941 55.000 15.93 0.00 0.00 4.49
8200 11087 4.709397 TCTCATCTTGACCTCTCTTCCTTC 59.291 45.833 0.00 0.00 0.00 3.46
8223 11110 5.063438 TCTGTGAACGTCTGAACTTTCTTTG 59.937 40.000 0.00 0.00 35.33 2.77
8224 11111 4.693566 TGTGAACGTCTGAACTTTCTTTGT 59.306 37.500 0.00 0.00 35.33 2.83
8225 11112 5.163893 TGTGAACGTCTGAACTTTCTTTGTC 60.164 40.000 0.00 0.00 35.33 3.18
8226 11113 5.063564 GTGAACGTCTGAACTTTCTTTGTCT 59.936 40.000 0.00 0.00 35.33 3.41
8227 11114 5.291128 TGAACGTCTGAACTTTCTTTGTCTC 59.709 40.000 0.00 0.00 35.33 3.36
8228 11115 5.012328 ACGTCTGAACTTTCTTTGTCTCT 57.988 39.130 0.00 0.00 0.00 3.10
8229 11116 4.806247 ACGTCTGAACTTTCTTTGTCTCTG 59.194 41.667 0.00 0.00 0.00 3.35
8230 11117 4.210120 CGTCTGAACTTTCTTTGTCTCTGG 59.790 45.833 0.00 0.00 0.00 3.86
8231 11118 4.024472 GTCTGAACTTTCTTTGTCTCTGGC 60.024 45.833 0.00 0.00 0.00 4.85
8232 11119 4.133078 CTGAACTTTCTTTGTCTCTGGCT 58.867 43.478 0.00 0.00 0.00 4.75
8233 11120 4.526970 TGAACTTTCTTTGTCTCTGGCTT 58.473 39.130 0.00 0.00 0.00 4.35
8234 11121 4.949856 TGAACTTTCTTTGTCTCTGGCTTT 59.050 37.500 0.00 0.00 0.00 3.51
8235 11122 5.418840 TGAACTTTCTTTGTCTCTGGCTTTT 59.581 36.000 0.00 0.00 0.00 2.27
8236 11123 5.921962 ACTTTCTTTGTCTCTGGCTTTTT 57.078 34.783 0.00 0.00 0.00 1.94
8258 11145 2.249844 TTCTGACGGGTTCTTTGTCC 57.750 50.000 0.00 0.00 0.00 4.02
8319 11209 6.228995 TCTGCTGATATTCTGCTCCATAAAG 58.771 40.000 7.70 0.00 41.21 1.85
8320 11210 5.933617 TGCTGATATTCTGCTCCATAAAGT 58.066 37.500 7.70 0.00 41.21 2.66
8321 11211 7.015584 TCTGCTGATATTCTGCTCCATAAAGTA 59.984 37.037 7.70 0.00 41.21 2.24
8322 11212 7.683578 TGCTGATATTCTGCTCCATAAAGTAT 58.316 34.615 7.70 0.00 41.21 2.12
8326 11216 8.786898 TGATATTCTGCTCCATAAAGTATTTGC 58.213 33.333 0.00 0.00 39.63 3.68
8327 11217 8.930846 ATATTCTGCTCCATAAAGTATTTGCT 57.069 30.769 0.00 0.00 39.63 3.91
8349 11239 3.439476 TCTCGCTTCGCCTATTAGTATCC 59.561 47.826 0.00 0.00 0.00 2.59
8390 11284 0.590195 GCTGTGGTTTGTGAGCTCTG 59.410 55.000 16.19 0.00 0.00 3.35
8395 11289 0.322008 GGTTTGTGAGCTCTGGGGAG 60.322 60.000 16.19 0.00 42.18 4.30
8396 11290 0.398318 GTTTGTGAGCTCTGGGGAGT 59.602 55.000 16.19 0.00 41.38 3.85
8660 11561 2.449464 TGAGCATTTTGGTCCCATCTG 58.551 47.619 4.43 0.00 43.72 2.90
8683 11584 8.306038 TCTGGAATTAAATTTGGTCAATCAGTG 58.694 33.333 0.00 0.00 0.00 3.66
8694 11595 2.996621 GTCAATCAGTGTCAGTACCAGC 59.003 50.000 0.00 0.00 0.00 4.85
8695 11596 1.995484 CAATCAGTGTCAGTACCAGCG 59.005 52.381 0.00 0.00 0.00 5.18
8716 11617 2.036992 GCCACTGTAGCTGCTGATAGAT 59.963 50.000 13.43 0.00 0.00 1.98
8717 11618 3.256879 GCCACTGTAGCTGCTGATAGATA 59.743 47.826 13.43 0.00 0.00 1.98
8718 11619 4.804108 CCACTGTAGCTGCTGATAGATAC 58.196 47.826 13.43 0.56 39.39 2.24
8719 11620 4.279420 CCACTGTAGCTGCTGATAGATACA 59.721 45.833 13.43 5.70 44.55 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.613630 CCCTCCCATCCCTATCCCG 60.614 68.421 0.00 0.00 0.00 5.14
6 7 1.689124 TATCTGCCCCTCCCATCCCT 61.689 60.000 0.00 0.00 0.00 4.20
46 47 8.567285 TCAGTCTTTTTAATCATTCTTCCTCC 57.433 34.615 0.00 0.00 0.00 4.30
66 67 7.811117 AGATCCTTGTGTAGTAGTATCAGTC 57.189 40.000 0.00 0.00 0.00 3.51
170 285 8.917415 ATATCTTTCCTTTCATTCTTTTTCGC 57.083 30.769 0.00 0.00 0.00 4.70
195 310 7.928167 CCACATGAGAGTGTAATTAGCTATCAA 59.072 37.037 14.40 3.85 37.82 2.57
196 311 7.069950 ACCACATGAGAGTGTAATTAGCTATCA 59.930 37.037 13.37 13.37 37.82 2.15
197 312 7.383572 CACCACATGAGAGTGTAATTAGCTATC 59.616 40.741 0.00 5.23 37.82 2.08
199 314 6.154534 ACACCACATGAGAGTGTAATTAGCTA 59.845 38.462 15.22 0.00 42.71 3.32
202 317 8.948631 ATAACACCACATGAGAGTGTAATTAG 57.051 34.615 16.51 0.00 43.69 1.73
203 318 9.733556 AAATAACACCACATGAGAGTGTAATTA 57.266 29.630 16.51 9.07 43.69 1.40
204 319 8.514594 CAAATAACACCACATGAGAGTGTAATT 58.485 33.333 16.51 10.99 43.69 1.40
205 320 7.882791 TCAAATAACACCACATGAGAGTGTAAT 59.117 33.333 16.51 8.14 43.69 1.89
206 321 7.220740 TCAAATAACACCACATGAGAGTGTAA 58.779 34.615 16.51 2.05 43.69 2.41
207 322 6.764379 TCAAATAACACCACATGAGAGTGTA 58.236 36.000 16.51 8.73 43.69 2.90
208 323 5.620206 TCAAATAACACCACATGAGAGTGT 58.380 37.500 0.00 7.03 46.33 3.55
209 324 6.748333 ATCAAATAACACCACATGAGAGTG 57.252 37.500 0.00 6.35 39.21 3.51
210 325 6.716628 ACAATCAAATAACACCACATGAGAGT 59.283 34.615 0.00 0.00 0.00 3.24
211 326 7.149569 ACAATCAAATAACACCACATGAGAG 57.850 36.000 0.00 0.00 0.00 3.20
212 327 8.806429 ATACAATCAAATAACACCACATGAGA 57.194 30.769 0.00 0.00 0.00 3.27
222 337 9.116067 GCCCTAGTGTTATACAATCAAATAACA 57.884 33.333 4.28 4.28 43.05 2.41
223 338 9.338622 AGCCCTAGTGTTATACAATCAAATAAC 57.661 33.333 0.00 0.00 38.49 1.89
224 339 9.555727 GAGCCCTAGTGTTATACAATCAAATAA 57.444 33.333 0.00 0.00 0.00 1.40
225 340 8.710239 TGAGCCCTAGTGTTATACAATCAAATA 58.290 33.333 0.00 0.00 0.00 1.40
226 341 7.573710 TGAGCCCTAGTGTTATACAATCAAAT 58.426 34.615 0.00 0.00 0.00 2.32
227 342 6.953101 TGAGCCCTAGTGTTATACAATCAAA 58.047 36.000 0.00 0.00 0.00 2.69
228 343 6.553953 TGAGCCCTAGTGTTATACAATCAA 57.446 37.500 0.00 0.00 0.00 2.57
229 344 6.747414 ATGAGCCCTAGTGTTATACAATCA 57.253 37.500 0.00 0.00 0.00 2.57
230 345 7.819900 CCTTATGAGCCCTAGTGTTATACAATC 59.180 40.741 0.00 0.00 0.00 2.67
231 346 7.680730 CCTTATGAGCCCTAGTGTTATACAAT 58.319 38.462 0.00 0.00 0.00 2.71
232 347 6.463897 GCCTTATGAGCCCTAGTGTTATACAA 60.464 42.308 0.00 0.00 0.00 2.41
233 348 5.011738 GCCTTATGAGCCCTAGTGTTATACA 59.988 44.000 0.00 0.00 0.00 2.29
234 349 5.246429 AGCCTTATGAGCCCTAGTGTTATAC 59.754 44.000 0.00 0.00 0.00 1.47
235 350 5.403512 AGCCTTATGAGCCCTAGTGTTATA 58.596 41.667 0.00 0.00 0.00 0.98
236 351 4.235372 AGCCTTATGAGCCCTAGTGTTAT 58.765 43.478 0.00 0.00 0.00 1.89
237 352 3.654273 AGCCTTATGAGCCCTAGTGTTA 58.346 45.455 0.00 0.00 0.00 2.41
238 353 2.482494 AGCCTTATGAGCCCTAGTGTT 58.518 47.619 0.00 0.00 0.00 3.32
239 354 2.182516 AGCCTTATGAGCCCTAGTGT 57.817 50.000 0.00 0.00 0.00 3.55
240 355 4.093011 AGATAGCCTTATGAGCCCTAGTG 58.907 47.826 0.00 0.00 0.00 2.74
241 356 4.045334 AGAGATAGCCTTATGAGCCCTAGT 59.955 45.833 0.00 0.00 0.00 2.57
242 357 4.609301 AGAGATAGCCTTATGAGCCCTAG 58.391 47.826 0.00 0.00 0.00 3.02
243 358 4.683766 AGAGATAGCCTTATGAGCCCTA 57.316 45.455 0.00 0.00 0.00 3.53
244 359 3.558608 AGAGATAGCCTTATGAGCCCT 57.441 47.619 0.00 0.00 0.00 5.19
245 360 4.564613 GGAAAGAGATAGCCTTATGAGCCC 60.565 50.000 0.00 0.00 0.00 5.19
246 361 4.285775 AGGAAAGAGATAGCCTTATGAGCC 59.714 45.833 0.00 0.00 0.00 4.70
247 362 5.478407 GAGGAAAGAGATAGCCTTATGAGC 58.522 45.833 0.00 0.00 0.00 4.26
248 363 5.779771 AGGAGGAAAGAGATAGCCTTATGAG 59.220 44.000 0.00 0.00 0.00 2.90
249 364 5.721225 AGGAGGAAAGAGATAGCCTTATGA 58.279 41.667 0.00 0.00 0.00 2.15
250 365 5.046663 GGAGGAGGAAAGAGATAGCCTTATG 60.047 48.000 0.00 0.00 0.00 1.90
251 366 5.090845 GGAGGAGGAAAGAGATAGCCTTAT 58.909 45.833 0.00 0.00 0.00 1.73
252 367 4.078571 TGGAGGAGGAAAGAGATAGCCTTA 60.079 45.833 0.00 0.00 0.00 2.69
253 368 3.310954 TGGAGGAGGAAAGAGATAGCCTT 60.311 47.826 0.00 0.00 0.00 4.35
254 369 2.248686 TGGAGGAGGAAAGAGATAGCCT 59.751 50.000 0.00 0.00 0.00 4.58
255 370 2.367241 GTGGAGGAGGAAAGAGATAGCC 59.633 54.545 0.00 0.00 0.00 3.93
256 371 3.034635 TGTGGAGGAGGAAAGAGATAGC 58.965 50.000 0.00 0.00 0.00 2.97
257 372 4.959210 TCTTGTGGAGGAGGAAAGAGATAG 59.041 45.833 0.00 0.00 0.00 2.08
321 436 4.968719 TGGCCTAGAGGTCATCAAAGATAA 59.031 41.667 3.32 0.00 46.36 1.75
322 437 4.556697 TGGCCTAGAGGTCATCAAAGATA 58.443 43.478 3.32 0.00 46.36 1.98
333 449 4.737346 CCTCCATGGCCTAGAGGT 57.263 61.111 21.58 0.00 41.96 3.85
399 515 5.416952 CCAAGATGCTCAACCTAACAAGAAT 59.583 40.000 0.00 0.00 0.00 2.40
413 531 1.000396 AGCCCCAACCAAGATGCTC 60.000 57.895 0.00 0.00 0.00 4.26
463 590 3.328505 GGACGAGAATAAAACGTGGGAA 58.671 45.455 0.00 0.00 40.29 3.97
499 626 1.676529 CCACACACTCTCCGACGATAT 59.323 52.381 0.00 0.00 0.00 1.63
500 627 1.092348 CCACACACTCTCCGACGATA 58.908 55.000 0.00 0.00 0.00 2.92
524 651 1.025812 ACGAGATCCGATGGAGACAC 58.974 55.000 10.05 0.00 42.73 3.67
551 678 0.898789 ACCGAAGACCATCACCGACT 60.899 55.000 0.00 0.00 0.00 4.18
559 686 1.573108 ACAGATCCACCGAAGACCAT 58.427 50.000 0.00 0.00 0.00 3.55
587 714 2.787680 CGAACGAAGACGAACAAAGACT 59.212 45.455 0.00 0.00 42.66 3.24
607 734 3.818773 AGGATCAAACCTGTAAACAACCG 59.181 43.478 0.00 0.00 39.01 4.44
610 737 6.361433 TCAGAAGGATCAAACCTGTAAACAA 58.639 36.000 0.00 0.00 40.49 2.83
656 783 2.903784 ACACACCAGAGTAGCAACCATA 59.096 45.455 0.00 0.00 0.00 2.74
695 822 3.364023 GGTAGTCGAAAAGTCATCGTGTG 59.636 47.826 0.00 0.00 40.99 3.82
709 836 6.594788 AACCTTGTTGTAATAGGTAGTCGA 57.405 37.500 0.00 0.00 41.33 4.20
734 861 2.185310 CTCCCTCACCAAAGTCGGGG 62.185 65.000 0.00 0.00 35.38 5.73
802 930 2.264794 CCGTGGACCACCTAGCAC 59.735 66.667 19.11 0.00 37.04 4.40
803 931 2.118732 TCCGTGGACCACCTAGCA 59.881 61.111 19.11 0.00 37.04 3.49
861 989 9.465199 TTCAATCTACTCATTTTCAATCATGGA 57.535 29.630 0.00 0.00 0.00 3.41
895 1023 8.877808 ATTTGTTCATCTTTCCTCTGTTTTTC 57.122 30.769 0.00 0.00 0.00 2.29
901 1029 9.784680 CTTGATTATTTGTTCATCTTTCCTCTG 57.215 33.333 0.00 0.00 0.00 3.35
903 1031 7.430502 CGCTTGATTATTTGTTCATCTTTCCTC 59.569 37.037 0.00 0.00 0.00 3.71
910 1038 8.847444 AAGATTCGCTTGATTATTTGTTCATC 57.153 30.769 0.00 0.00 34.93 2.92
912 1040 9.128107 GAAAAGATTCGCTTGATTATTTGTTCA 57.872 29.630 0.00 0.00 36.80 3.18
975 1162 0.625316 TAGGGCCGTACAGTAGTGGA 59.375 55.000 0.00 0.00 0.00 4.02
1009 1196 0.417035 TGGCTGGATTGGGGGAAAAT 59.583 50.000 0.00 0.00 0.00 1.82
1019 1218 1.443407 CCGACGAGATGGCTGGATT 59.557 57.895 0.00 0.00 0.00 3.01
1096 1296 1.987855 CGGGTGGCCTCTAGGTTGA 60.988 63.158 3.32 0.00 37.57 3.18
1178 1378 1.474143 GCTCATACCTCTGCTTGGTCC 60.474 57.143 0.00 0.00 38.88 4.46
1268 1468 2.669240 GGTGGAAGGAGGGGAACG 59.331 66.667 0.00 0.00 0.00 3.95
1631 1841 3.843027 AGACTAGATTGCTCATATGGGGG 59.157 47.826 4.37 0.00 0.00 5.40
1675 2175 6.790825 GCAACAAGAAACACGAGATAGTAAAC 59.209 38.462 0.00 0.00 0.00 2.01
1812 2312 3.002862 GTCACGATTGTTTGGCTGTTACA 59.997 43.478 0.00 0.00 0.00 2.41
1819 2319 0.385473 CACGGTCACGATTGTTTGGC 60.385 55.000 0.00 0.00 44.60 4.52
1863 2366 7.690952 AGCGGTTATTACCTTTATTGTCAAA 57.309 32.000 0.00 0.00 42.66 2.69
1897 2400 5.259832 TGTGCATTGTTGAATCTGTTGAA 57.740 34.783 0.00 0.00 0.00 2.69
1988 2491 9.116067 CGGGTCAAATAAATATCAGAAAGGTAA 57.884 33.333 0.00 0.00 0.00 2.85
2083 2586 4.153117 GCATTATTTACCTGAGATCCTGCG 59.847 45.833 0.00 0.00 0.00 5.18
2322 2825 6.741358 GCATAACAAAACGTGGAGAATAAGTC 59.259 38.462 0.00 0.00 0.00 3.01
2324 2827 6.027749 GGCATAACAAAACGTGGAGAATAAG 58.972 40.000 0.00 0.00 0.00 1.73
2368 2871 3.698539 TGTTGCTGAGTCCAATTTGACAA 59.301 39.130 11.85 0.00 37.73 3.18
2386 2889 6.402875 CCATCAACATGTCTGTGATAGTGTTG 60.403 42.308 10.44 9.14 44.57 3.33
2496 3005 6.734104 AAGCAGAATTCAGACACTTATGAC 57.266 37.500 8.44 0.00 0.00 3.06
3031 3739 1.729131 CAAATGCCGTGAACGCACC 60.729 57.895 0.00 0.00 42.09 5.01
3056 3767 9.627123 ATGAATTCAGAAAATAATTAGACCGGA 57.373 29.630 9.46 0.00 0.00 5.14
3057 3768 9.884465 GATGAATTCAGAAAATAATTAGACCGG 57.116 33.333 14.54 0.00 0.00 5.28
3100 3811 8.554528 ACTTGCATTCTATCAATACAAATCGAG 58.445 33.333 0.00 0.00 0.00 4.04
3397 4112 9.783081 TCACATATACATTCACAGCTTAATCAT 57.217 29.630 0.00 0.00 0.00 2.45
3447 4162 4.336433 TCGATGAAGGATCAATGCTTTTCC 59.664 41.667 0.00 0.00 38.63 3.13
3455 4170 5.450965 GCCACAATTTCGATGAAGGATCAAT 60.451 40.000 0.00 0.00 39.49 2.57
3545 4260 4.365514 TGGCTTGGAAGTCATAAAGTCA 57.634 40.909 0.00 0.00 35.36 3.41
3741 6424 2.019984 GGGTGCTTCAGAATCATGGAC 58.980 52.381 0.00 0.00 0.00 4.02
3774 6457 8.871125 TCTGATCCTAACCTAAGCCTTTAATAG 58.129 37.037 0.00 0.00 0.00 1.73
3837 6520 4.919774 TTTAGGACAGTGCTATGGGAAA 57.080 40.909 2.11 0.00 0.00 3.13
4014 6698 3.452474 TGCGTCAAAACCCAAAAAGATG 58.548 40.909 0.00 0.00 0.00 2.90
4188 6872 9.468532 AGAAAGCATTCACAATTAGTTCTTTTC 57.531 29.630 4.27 0.00 38.06 2.29
4391 7075 6.424509 TGCAAGATACAAATTTCCAAAAGCTG 59.575 34.615 0.00 0.00 0.00 4.24
4397 7081 7.098477 CAGGATTGCAAGATACAAATTTCCAA 58.902 34.615 4.94 0.00 29.76 3.53
4731 7416 7.171508 TGACAGAATCACAAGTGAGTTAATCAC 59.828 37.037 4.51 4.51 45.01 3.06
5042 7727 1.709578 AGTGTCACTGAAGGAGCAGA 58.290 50.000 4.21 0.00 39.20 4.26
5047 7732 4.503817 CCAGATTGAAGTGTCACTGAAGGA 60.504 45.833 6.18 0.00 32.22 3.36
5094 7779 0.546598 GATCAGGTTACTGGGTGGGG 59.453 60.000 0.00 0.00 44.99 4.96
5145 7830 5.862845 AGATGTCTCCATAGCCATTGTAAG 58.137 41.667 0.00 0.00 0.00 2.34
5767 8453 5.721232 ACTCTGTAGGTGCTACAATGTTAC 58.279 41.667 0.00 0.00 44.80 2.50
5844 8531 7.776969 AGATACAATATCCAAACTGCAGAACAT 59.223 33.333 23.35 7.14 0.00 2.71
6060 8753 6.347725 GGCAGTCATCAACTTACAAGTTACAG 60.348 42.308 7.02 1.44 46.89 2.74
6212 8905 5.311121 TCCAACTTGGAATAAACCCTGTAGA 59.689 40.000 8.15 0.00 45.00 2.59
6259 8952 4.989875 AACCCTGCATATCTTATCAGCT 57.010 40.909 0.00 0.00 0.00 4.24
6384 9077 6.300354 AGCGTATGGTAGCAATGTTAATTC 57.700 37.500 0.00 0.00 35.48 2.17
6420 9114 6.455646 GCCATATGTATGCTAGCGATGTTAAC 60.456 42.308 10.77 0.00 32.40 2.01
6637 9347 8.967918 AGTAAAGAAAGCTTCCTTTTAAGTGTT 58.032 29.630 16.29 0.00 41.22 3.32
6645 9355 9.409918 ACTAAGAAAGTAAAGAAAGCTTCCTTT 57.590 29.630 15.41 15.41 39.29 3.11
6647 9357 8.841300 CAACTAAGAAAGTAAAGAAAGCTTCCT 58.159 33.333 0.00 0.00 37.50 3.36
6662 9372 7.096477 GCAGCAATGTTTGTACAACTAAGAAAG 60.096 37.037 8.07 0.00 37.91 2.62
6686 9396 0.251165 GACTTAGCAAGTTGGGGGCA 60.251 55.000 4.75 0.00 43.03 5.36
6688 9398 2.854522 CGACTTAGCAAGTTGGGGG 58.145 57.895 4.75 0.00 43.03 5.40
6820 9530 7.491048 AGCATATTAATGGTAAAACGCAAAAGG 59.509 33.333 0.00 0.00 41.96 3.11
6981 9691 3.441572 CCAGGCTGAACTTTCATTGTAGG 59.558 47.826 17.94 0.00 36.46 3.18
7046 9756 3.309388 CGGCATGCTAGTGTATACAGAC 58.691 50.000 18.92 0.00 0.00 3.51
7106 9819 0.184933 GTGGGGGTGGCATGCTATTA 59.815 55.000 18.92 0.00 0.00 0.98
7127 9840 3.415087 GGAGGCATGCTCCTGGGT 61.415 66.667 18.92 0.00 36.38 4.51
7202 9915 3.905249 GCCAACGGCTCCTTTAGG 58.095 61.111 0.00 0.00 46.69 2.69
7213 9926 1.880340 GATCTCAGAGGCGCCAACG 60.880 63.158 31.54 16.19 44.07 4.10
7215 9928 1.888436 AACGATCTCAGAGGCGCCAA 61.888 55.000 31.54 10.06 0.00 4.52
7225 9938 1.136774 CTCGCGTCCAACGATCTCA 59.863 57.895 5.77 0.00 46.05 3.27
7232 9945 1.664965 AGCAGAACTCGCGTCCAAC 60.665 57.895 5.77 0.00 0.00 3.77
7260 9973 2.526888 TCCTCTTTAGGCTCCTTCGA 57.473 50.000 0.00 0.00 43.31 3.71
7289 10002 7.933577 CCTCTATTACCAGAAACAGATGCAATA 59.066 37.037 0.00 0.00 0.00 1.90
7291 10004 6.070251 TCCTCTATTACCAGAAACAGATGCAA 60.070 38.462 0.00 0.00 0.00 4.08
7304 10017 3.653164 TCATGGTGCTCCTCTATTACCA 58.347 45.455 6.34 0.00 44.66 3.25
7373 10087 9.554395 TCTGAAAATGGACGCAAAGATAATATA 57.446 29.630 0.00 0.00 0.00 0.86
7374 10088 8.450578 TCTGAAAATGGACGCAAAGATAATAT 57.549 30.769 0.00 0.00 0.00 1.28
7436 10150 0.042013 GCTAGTCCTCATCGTCGTCG 60.042 60.000 0.00 0.00 38.55 5.12
7439 10153 0.316278 CACGCTAGTCCTCATCGTCG 60.316 60.000 0.00 0.00 0.00 5.12
7445 10159 2.351244 CCAGGCACGCTAGTCCTCA 61.351 63.158 0.00 0.00 0.00 3.86
7448 10162 2.496817 CTCCAGGCACGCTAGTCC 59.503 66.667 0.00 0.00 0.00 3.85
7497 10211 3.659786 TCATTCTCACACCGACGAAAAT 58.340 40.909 0.00 0.00 0.00 1.82
7502 10216 1.406219 CGCTCATTCTCACACCGACG 61.406 60.000 0.00 0.00 0.00 5.12
7510 10224 4.217767 AGTTACACTACACGCTCATTCTCA 59.782 41.667 0.00 0.00 0.00 3.27
7526 10240 4.746611 GTGTTACCCACAGTACAGTTACAC 59.253 45.833 0.00 1.75 43.92 2.90
7562 10276 1.559682 ACTGTCTACCGGCATTTCCAT 59.440 47.619 0.00 0.00 34.01 3.41
7655 10383 1.063190 ACGTGTATCCAGATCAGGGGA 60.063 52.381 4.05 3.81 37.64 4.81
7704 10435 8.738645 AAAGAATACTTAAGGAACCATGCTAG 57.261 34.615 7.53 0.00 35.05 3.42
7705 10436 8.325787 TGAAAGAATACTTAAGGAACCATGCTA 58.674 33.333 7.53 0.00 35.05 3.49
7745 10476 1.933307 AAGTAATTGGGGGCGGAGGG 61.933 60.000 0.00 0.00 0.00 4.30
7746 10477 0.751643 CAAGTAATTGGGGGCGGAGG 60.752 60.000 0.00 0.00 0.00 4.30
7747 10478 0.034477 ACAAGTAATTGGGGGCGGAG 60.034 55.000 7.93 0.00 0.00 4.63
7748 10479 0.034863 GACAAGTAATTGGGGGCGGA 60.035 55.000 7.93 0.00 0.00 5.54
7749 10480 1.373590 CGACAAGTAATTGGGGGCGG 61.374 60.000 7.93 0.00 0.00 6.13
7750 10481 1.988834 GCGACAAGTAATTGGGGGCG 61.989 60.000 7.93 6.62 0.00 6.13
7751 10482 0.963355 TGCGACAAGTAATTGGGGGC 60.963 55.000 7.93 7.83 0.00 5.80
7752 10483 1.094785 CTGCGACAAGTAATTGGGGG 58.905 55.000 7.93 0.00 0.00 5.40
7753 10484 2.107950 TCTGCGACAAGTAATTGGGG 57.892 50.000 7.93 0.00 0.00 4.96
7754 10485 4.701956 ATTTCTGCGACAAGTAATTGGG 57.298 40.909 7.93 0.03 0.00 4.12
7755 10486 7.406799 AAAAATTTCTGCGACAAGTAATTGG 57.593 32.000 7.93 0.00 30.40 3.16
7756 10487 9.180678 ACTAAAAATTTCTGCGACAAGTAATTG 57.819 29.630 0.45 0.45 30.40 2.32
7757 10488 9.744468 AACTAAAAATTTCTGCGACAAGTAATT 57.256 25.926 0.00 0.00 30.97 1.40
7758 10489 9.394477 GAACTAAAAATTTCTGCGACAAGTAAT 57.606 29.630 0.00 0.00 0.00 1.89
7759 10490 8.617809 AGAACTAAAAATTTCTGCGACAAGTAA 58.382 29.630 0.00 0.00 30.65 2.24
7760 10491 8.149973 AGAACTAAAAATTTCTGCGACAAGTA 57.850 30.769 0.00 0.00 30.65 2.24
7761 10492 7.027778 AGAACTAAAAATTTCTGCGACAAGT 57.972 32.000 0.00 0.00 30.65 3.16
7762 10493 8.495949 TCTAGAACTAAAAATTTCTGCGACAAG 58.504 33.333 0.00 0.00 33.96 3.16
7763 10494 8.373048 TCTAGAACTAAAAATTTCTGCGACAA 57.627 30.769 0.00 0.00 33.96 3.18
7764 10495 7.956420 TCTAGAACTAAAAATTTCTGCGACA 57.044 32.000 0.00 0.00 33.96 4.35
7765 10496 9.903185 GTATCTAGAACTAAAAATTTCTGCGAC 57.097 33.333 0.00 0.00 33.96 5.19
7766 10497 9.647797 TGTATCTAGAACTAAAAATTTCTGCGA 57.352 29.630 0.00 0.00 33.96 5.10
7789 10520 9.502145 GTCGCAAAAATGATAGAATTGAATGTA 57.498 29.630 0.00 0.00 0.00 2.29
7790 10521 8.028354 TGTCGCAAAAATGATAGAATTGAATGT 58.972 29.630 0.00 0.00 0.00 2.71
7791 10522 8.397215 TGTCGCAAAAATGATAGAATTGAATG 57.603 30.769 0.00 0.00 0.00 2.67
7792 10523 8.984891 TTGTCGCAAAAATGATAGAATTGAAT 57.015 26.923 0.00 0.00 0.00 2.57
7793 10524 8.081633 ACTTGTCGCAAAAATGATAGAATTGAA 58.918 29.630 0.00 0.00 0.00 2.69
7794 10525 7.592938 ACTTGTCGCAAAAATGATAGAATTGA 58.407 30.769 0.00 0.00 0.00 2.57
7795 10526 7.801547 ACTTGTCGCAAAAATGATAGAATTG 57.198 32.000 0.00 0.00 0.00 2.32
7798 10529 9.906660 AAATTACTTGTCGCAAAAATGATAGAA 57.093 25.926 0.00 0.00 0.00 2.10
7801 10532 9.781834 CCTAAATTACTTGTCGCAAAAATGATA 57.218 29.630 0.00 0.00 0.00 2.15
7802 10533 8.519526 TCCTAAATTACTTGTCGCAAAAATGAT 58.480 29.630 0.00 0.00 0.00 2.45
7803 10534 7.806014 GTCCTAAATTACTTGTCGCAAAAATGA 59.194 33.333 0.00 0.00 0.00 2.57
7804 10535 7.061789 GGTCCTAAATTACTTGTCGCAAAAATG 59.938 37.037 0.00 0.00 0.00 2.32
7805 10536 7.088272 GGTCCTAAATTACTTGTCGCAAAAAT 58.912 34.615 0.00 0.00 0.00 1.82
7806 10537 6.440436 GGTCCTAAATTACTTGTCGCAAAAA 58.560 36.000 0.00 0.00 0.00 1.94
7807 10538 5.334260 CGGTCCTAAATTACTTGTCGCAAAA 60.334 40.000 0.00 0.00 0.00 2.44
7808 10539 4.152759 CGGTCCTAAATTACTTGTCGCAAA 59.847 41.667 0.00 0.00 0.00 3.68
7809 10540 3.680937 CGGTCCTAAATTACTTGTCGCAA 59.319 43.478 0.00 0.00 0.00 4.85
7810 10541 3.056678 TCGGTCCTAAATTACTTGTCGCA 60.057 43.478 0.00 0.00 0.00 5.10
7811 10542 3.514645 TCGGTCCTAAATTACTTGTCGC 58.485 45.455 0.00 0.00 0.00 5.19
7812 10543 4.110482 CCTCGGTCCTAAATTACTTGTCG 58.890 47.826 0.00 0.00 0.00 4.35
7813 10544 4.161001 TCCCTCGGTCCTAAATTACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
7814 10545 4.098894 TCCCTCGGTCCTAAATTACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
7815 10546 4.161754 ACTCCCTCGGTCCTAAATTACTTG 59.838 45.833 0.00 0.00 0.00 3.16
7816 10547 4.359996 ACTCCCTCGGTCCTAAATTACTT 58.640 43.478 0.00 0.00 0.00 2.24
7817 10548 3.991683 ACTCCCTCGGTCCTAAATTACT 58.008 45.455 0.00 0.00 0.00 2.24
7818 10549 5.303845 ACATACTCCCTCGGTCCTAAATTAC 59.696 44.000 0.00 0.00 0.00 1.89
7819 10550 5.303589 CACATACTCCCTCGGTCCTAAATTA 59.696 44.000 0.00 0.00 0.00 1.40
7820 10551 4.101119 CACATACTCCCTCGGTCCTAAATT 59.899 45.833 0.00 0.00 0.00 1.82
7821 10552 3.641906 CACATACTCCCTCGGTCCTAAAT 59.358 47.826 0.00 0.00 0.00 1.40
7822 10553 3.028850 CACATACTCCCTCGGTCCTAAA 58.971 50.000 0.00 0.00 0.00 1.85
7823 10554 2.024655 ACACATACTCCCTCGGTCCTAA 60.025 50.000 0.00 0.00 0.00 2.69
7824 10555 1.567649 ACACATACTCCCTCGGTCCTA 59.432 52.381 0.00 0.00 0.00 2.94
7825 10556 0.335361 ACACATACTCCCTCGGTCCT 59.665 55.000 0.00 0.00 0.00 3.85
7826 10557 1.192428 AACACATACTCCCTCGGTCC 58.808 55.000 0.00 0.00 0.00 4.46
7827 10558 3.181478 CCTAAACACATACTCCCTCGGTC 60.181 52.174 0.00 0.00 0.00 4.79
7828 10559 2.764572 CCTAAACACATACTCCCTCGGT 59.235 50.000 0.00 0.00 0.00 4.69
7829 10560 2.764572 ACCTAAACACATACTCCCTCGG 59.235 50.000 0.00 0.00 0.00 4.63
7830 10561 3.782046 CACCTAAACACATACTCCCTCG 58.218 50.000 0.00 0.00 0.00 4.63
7831 10562 3.197983 AGCACCTAAACACATACTCCCTC 59.802 47.826 0.00 0.00 0.00 4.30
7832 10563 3.055094 CAGCACCTAAACACATACTCCCT 60.055 47.826 0.00 0.00 0.00 4.20
7833 10564 3.270877 CAGCACCTAAACACATACTCCC 58.729 50.000 0.00 0.00 0.00 4.30
7834 10565 3.933332 GACAGCACCTAAACACATACTCC 59.067 47.826 0.00 0.00 0.00 3.85
7835 10566 4.566004 TGACAGCACCTAAACACATACTC 58.434 43.478 0.00 0.00 0.00 2.59
7836 10567 4.569943 CTGACAGCACCTAAACACATACT 58.430 43.478 0.00 0.00 0.00 2.12
7837 10568 3.125316 GCTGACAGCACCTAAACACATAC 59.875 47.826 22.62 0.00 41.89 2.39
7838 10569 3.334691 GCTGACAGCACCTAAACACATA 58.665 45.455 22.62 0.00 41.89 2.29
7866 10597 7.645402 AGTGCACAGTTTATAAAAAGGTACAC 58.355 34.615 21.04 14.60 32.55 2.90
7868 10599 7.013529 CGAGTGCACAGTTTATAAAAAGGTAC 58.986 38.462 21.04 0.92 0.00 3.34
7869 10600 6.347888 GCGAGTGCACAGTTTATAAAAAGGTA 60.348 38.462 21.04 0.00 42.15 3.08
7870 10601 5.562113 GCGAGTGCACAGTTTATAAAAAGGT 60.562 40.000 21.04 0.00 42.15 3.50
7873 10604 5.613795 CGAGCGAGTGCACAGTTTATAAAAA 60.614 40.000 21.04 0.00 46.23 1.94
7887 10624 0.389426 TTTAGGAACCGAGCGAGTGC 60.389 55.000 0.00 0.00 43.24 4.40
7888 10625 2.295253 ATTTAGGAACCGAGCGAGTG 57.705 50.000 0.00 0.00 0.00 3.51
7893 10730 5.467705 ACGTCATATATTTAGGAACCGAGC 58.532 41.667 0.00 0.00 0.00 5.03
7897 10734 7.136772 GCCAAAACGTCATATATTTAGGAACC 58.863 38.462 0.00 0.00 0.00 3.62
7903 10740 6.935741 AGCTGCCAAAACGTCATATATTTA 57.064 33.333 0.00 0.00 0.00 1.40
7909 10746 5.637006 ATTTAAGCTGCCAAAACGTCATA 57.363 34.783 0.00 0.00 0.00 2.15
7915 10752 6.360414 GCAATTTCAATTTAAGCTGCCAAAAC 59.640 34.615 0.00 0.00 0.00 2.43
7916 10753 6.437094 GCAATTTCAATTTAAGCTGCCAAAA 58.563 32.000 0.00 0.00 0.00 2.44
7917 10754 5.048852 GGCAATTTCAATTTAAGCTGCCAAA 60.049 36.000 16.27 0.00 38.46 3.28
7918 10755 4.455190 GGCAATTTCAATTTAAGCTGCCAA 59.545 37.500 16.27 0.00 38.46 4.52
7919 10756 4.002316 GGCAATTTCAATTTAAGCTGCCA 58.998 39.130 16.27 0.00 38.46 4.92
7920 10757 4.002316 TGGCAATTTCAATTTAAGCTGCC 58.998 39.130 15.09 15.09 38.99 4.85
7921 10758 5.610235 TTGGCAATTTCAATTTAAGCTGC 57.390 34.783 0.00 0.00 0.00 5.25
7922 10759 6.857451 GGTTTTGGCAATTTCAATTTAAGCTG 59.143 34.615 0.00 0.00 0.00 4.24
7923 10760 6.772233 AGGTTTTGGCAATTTCAATTTAAGCT 59.228 30.769 0.00 0.93 0.00 3.74
7924 10761 6.969366 AGGTTTTGGCAATTTCAATTTAAGC 58.031 32.000 0.00 0.00 0.00 3.09
7925 10762 9.271828 ACTAGGTTTTGGCAATTTCAATTTAAG 57.728 29.630 0.00 0.00 0.00 1.85
7935 10772 9.930158 TTCCTAATATACTAGGTTTTGGCAATT 57.070 29.630 7.13 0.00 39.70 2.32
7936 10773 9.350951 GTTCCTAATATACTAGGTTTTGGCAAT 57.649 33.333 7.13 0.00 39.70 3.56
7938 10775 7.863722 TGTTCCTAATATACTAGGTTTTGGCA 58.136 34.615 7.13 0.00 39.70 4.92
7939 10776 8.208903 TCTGTTCCTAATATACTAGGTTTTGGC 58.791 37.037 7.13 0.00 39.70 4.52
7940 10777 9.765795 CTCTGTTCCTAATATACTAGGTTTTGG 57.234 37.037 7.13 0.00 39.70 3.28
7941 10778 9.765795 CCTCTGTTCCTAATATACTAGGTTTTG 57.234 37.037 7.13 0.00 39.70 2.44
7942 10779 8.935741 CCCTCTGTTCCTAATATACTAGGTTTT 58.064 37.037 7.13 0.00 39.70 2.43
7943 10780 8.294690 TCCCTCTGTTCCTAATATACTAGGTTT 58.705 37.037 7.13 0.00 39.70 3.27
7944 10781 7.834046 TCCCTCTGTTCCTAATATACTAGGTT 58.166 38.462 7.13 0.00 39.70 3.50
7945 10782 7.075267 ACTCCCTCTGTTCCTAATATACTAGGT 59.925 40.741 7.13 0.00 39.70 3.08
7946 10783 7.471890 ACTCCCTCTGTTCCTAATATACTAGG 58.528 42.308 0.51 0.51 40.03 3.02
7953 10790 9.892444 TTGATTATACTCCCTCTGTTCCTAATA 57.108 33.333 0.00 0.00 0.00 0.98
7954 10791 8.798975 TTGATTATACTCCCTCTGTTCCTAAT 57.201 34.615 0.00 0.00 0.00 1.73
7957 10794 8.013667 ACTATTGATTATACTCCCTCTGTTCCT 58.986 37.037 0.00 0.00 0.00 3.36
8030 10867 1.300388 CTTTGTGCAAGGCAGCCAC 60.300 57.895 15.80 3.05 40.08 5.01
8031 10868 2.500714 CCTTTGTGCAAGGCAGCCA 61.501 57.895 15.80 0.00 46.18 4.75
8044 10881 0.175302 TGCAAGTTGCCACACCTTTG 59.825 50.000 24.59 0.00 44.23 2.77
8045 10882 0.461135 CTGCAAGTTGCCACACCTTT 59.539 50.000 24.59 0.00 44.23 3.11
8059 10896 2.554636 CGGCAAACAGAGGCTGCAA 61.555 57.895 0.50 0.00 37.83 4.08
8086 10967 2.095843 GTGCCGTGTCGAATTCGC 59.904 61.111 22.90 17.36 39.60 4.70
8090 10971 0.876777 TGTTTCGTGCCGTGTCGAAT 60.877 50.000 6.63 0.00 43.69 3.34
8100 10981 3.347958 TGGAATTGAACTGTTTCGTGC 57.652 42.857 0.00 0.00 34.04 5.34
8137 11018 1.435577 GTGTTCAGGGTCGCGTAAAT 58.564 50.000 5.77 0.00 0.00 1.40
8157 11038 2.951458 GTTTAGGTGCCGTGCCAC 59.049 61.111 0.00 0.00 35.00 5.01
8200 11087 5.163854 ACAAAGAAAGTTCAGACGTTCACAG 60.164 40.000 7.69 0.85 43.79 3.66
8236 11123 3.379057 GGACAAAGAACCCGTCAGAAAAA 59.621 43.478 0.00 0.00 0.00 1.94
8237 11124 2.946990 GGACAAAGAACCCGTCAGAAAA 59.053 45.455 0.00 0.00 0.00 2.29
8238 11125 2.092861 TGGACAAAGAACCCGTCAGAAA 60.093 45.455 0.00 0.00 0.00 2.52
8239 11126 1.487142 TGGACAAAGAACCCGTCAGAA 59.513 47.619 0.00 0.00 0.00 3.02
8240 11127 1.124780 TGGACAAAGAACCCGTCAGA 58.875 50.000 0.00 0.00 0.00 3.27
8241 11128 1.806542 CATGGACAAAGAACCCGTCAG 59.193 52.381 0.00 0.00 0.00 3.51
8242 11129 1.544537 CCATGGACAAAGAACCCGTCA 60.545 52.381 5.56 0.00 0.00 4.35
8243 11130 1.165270 CCATGGACAAAGAACCCGTC 58.835 55.000 5.56 0.00 0.00 4.79
8244 11131 0.893727 GCCATGGACAAAGAACCCGT 60.894 55.000 18.40 0.00 0.00 5.28
8245 11132 0.609131 AGCCATGGACAAAGAACCCG 60.609 55.000 18.40 0.00 0.00 5.28
8246 11133 1.632589 AAGCCATGGACAAAGAACCC 58.367 50.000 18.40 0.00 0.00 4.11
8247 11134 2.164422 GCTAAGCCATGGACAAAGAACC 59.836 50.000 18.40 0.00 0.00 3.62
8248 11135 3.084786 AGCTAAGCCATGGACAAAGAAC 58.915 45.455 18.40 0.00 0.00 3.01
8249 11136 3.439857 AGCTAAGCCATGGACAAAGAA 57.560 42.857 18.40 0.00 0.00 2.52
8250 11137 3.439857 AAGCTAAGCCATGGACAAAGA 57.560 42.857 18.40 0.00 0.00 2.52
8251 11138 4.333926 GTCTAAGCTAAGCCATGGACAAAG 59.666 45.833 18.40 7.68 30.81 2.77
8252 11139 4.261801 GTCTAAGCTAAGCCATGGACAAA 58.738 43.478 18.40 0.00 30.81 2.83
8253 11140 3.678806 CGTCTAAGCTAAGCCATGGACAA 60.679 47.826 18.40 0.00 30.18 3.18
8258 11145 2.860735 GTGACGTCTAAGCTAAGCCATG 59.139 50.000 17.92 0.00 0.00 3.66
8349 11239 8.184848 ACAGCAGCACAGTATTCGTATATATAG 58.815 37.037 0.00 0.00 0.00 1.31
8358 11252 0.723414 CCACAGCAGCACAGTATTCG 59.277 55.000 0.00 0.00 0.00 3.34
8359 11253 1.813513 ACCACAGCAGCACAGTATTC 58.186 50.000 0.00 0.00 0.00 1.75
8360 11254 2.276732 AACCACAGCAGCACAGTATT 57.723 45.000 0.00 0.00 0.00 1.89
8364 11258 0.248743 CACAAACCACAGCAGCACAG 60.249 55.000 0.00 0.00 0.00 3.66
8660 11561 8.087750 TGACACTGATTGACCAAATTTAATTCC 58.912 33.333 0.00 0.00 0.00 3.01
8683 11584 1.738099 CAGTGGCGCTGGTACTGAC 60.738 63.158 20.17 0.00 43.35 3.51
8694 11595 0.103026 TATCAGCAGCTACAGTGGCG 59.897 55.000 2.82 0.01 34.52 5.69
8695 11596 1.410517 TCTATCAGCAGCTACAGTGGC 59.589 52.381 0.00 0.00 0.00 5.01
8717 11618 9.073475 GAGTTTCACTGGATATCTATCTACTGT 57.927 37.037 2.05 0.00 33.28 3.55
8718 11619 8.233868 CGAGTTTCACTGGATATCTATCTACTG 58.766 40.741 2.05 0.00 33.28 2.74
8719 11620 8.158132 TCGAGTTTCACTGGATATCTATCTACT 58.842 37.037 2.05 0.00 27.72 2.57
8720 11621 8.325421 TCGAGTTTCACTGGATATCTATCTAC 57.675 38.462 2.05 0.00 27.72 2.59
8750 11651 0.251354 TCTCTTCCAGGTCATGCTGC 59.749 55.000 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.