Multiple sequence alignment - TraesCS4D01G246200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G246200 chr4D 100.000 3983 0 0 1 3983 414637807 414633825 0.000000e+00 7356.0
1 TraesCS4D01G246200 chr4D 97.178 1063 20 3 1706 2761 469101971 469103030 0.000000e+00 1788.0
2 TraesCS4D01G246200 chr4D 93.683 649 32 4 131 772 8275062 8274416 0.000000e+00 963.0
3 TraesCS4D01G246200 chr4D 100.000 135 0 0 4426 4560 414633382 414633248 2.720000e-62 250.0
4 TraesCS4D01G246200 chr4D 96.992 133 4 0 4428 4560 469104171 469104303 1.650000e-54 224.0
5 TraesCS4D01G246200 chr7D 95.699 2302 55 9 1707 3983 370966230 370963948 0.000000e+00 3663.0
6 TraesCS4D01G246200 chr7D 93.585 873 26 11 1707 2572 510435082 510434233 0.000000e+00 1275.0
7 TraesCS4D01G246200 chr7D 88.854 314 17 7 3688 3983 510433140 510432827 2.000000e-98 370.0
8 TraesCS4D01G246200 chr7D 72.107 337 76 16 1044 1371 194273443 194273770 8.130000e-13 86.1
9 TraesCS4D01G246200 chr2D 95.284 2290 59 19 1707 3983 459830858 459833111 0.000000e+00 3585.0
10 TraesCS4D01G246200 chr2D 96.853 2002 39 4 1706 3700 155549163 155547179 0.000000e+00 3326.0
11 TraesCS4D01G246200 chr2D 92.900 2324 97 37 1704 3983 632025044 632022745 0.000000e+00 3315.0
12 TraesCS4D01G246200 chr2D 96.087 1201 35 5 1707 2899 114802129 114803325 0.000000e+00 1947.0
13 TraesCS4D01G246200 chr2D 96.992 133 4 0 4428 4560 632022442 632022310 1.650000e-54 224.0
14 TraesCS4D01G246200 chr2D 96.992 133 4 0 4428 4560 632022491 632022359 1.650000e-54 224.0
15 TraesCS4D01G246200 chr6D 95.149 2309 43 10 1707 3983 81150542 81148271 0.000000e+00 3579.0
16 TraesCS4D01G246200 chr6D 92.597 824 34 23 3170 3983 445321316 445322122 0.000000e+00 1158.0
17 TraesCS4D01G246200 chr3D 94.698 2320 65 16 1703 3983 114397633 114395333 0.000000e+00 3550.0
18 TraesCS4D01G246200 chr3D 94.904 2296 67 30 1706 3983 595953695 595951432 0.000000e+00 3546.0
19 TraesCS4D01G246200 chr3D 94.009 651 34 2 128 774 559108841 559109490 0.000000e+00 981.0
20 TraesCS4D01G246200 chr7A 93.589 2293 90 22 1706 3983 732102923 732100673 0.000000e+00 3367.0
21 TraesCS4D01G246200 chr7A 95.965 2032 54 3 1980 3983 652923889 652925920 0.000000e+00 3273.0
22 TraesCS4D01G246200 chr7A 96.992 133 4 0 4428 4560 100753800 100753668 1.650000e-54 224.0
23 TraesCS4D01G246200 chr1A 93.496 2291 83 26 1707 3983 1315709 1317947 0.000000e+00 3345.0
24 TraesCS4D01G246200 chr7B 96.677 1264 36 6 2723 3983 598648511 598647251 0.000000e+00 2097.0
25 TraesCS4D01G246200 chr7B 96.598 1264 37 6 2723 3983 598616290 598615030 0.000000e+00 2091.0
26 TraesCS4D01G246200 chr7B 92.767 1272 40 15 2720 3983 451086131 451087358 0.000000e+00 1792.0
27 TraesCS4D01G246200 chr7B 94.053 639 34 1 131 765 74093313 74092675 0.000000e+00 966.0
28 TraesCS4D01G246200 chr5D 96.503 1201 31 4 1707 2899 58672898 58671701 0.000000e+00 1975.0
29 TraesCS4D01G246200 chr5D 96.903 1130 17 1 2872 3983 384157595 384158724 0.000000e+00 1877.0
30 TraesCS4D01G246200 chr5D 96.406 807 18 2 1707 2506 384156469 384157271 0.000000e+00 1319.0
31 TraesCS4D01G246200 chr5D 97.744 133 3 0 4428 4560 384159475 384159607 3.550000e-56 230.0
32 TraesCS4D01G246200 chr5D 96.992 133 4 0 4428 4560 384159524 384159656 1.650000e-54 224.0
33 TraesCS4D01G246200 chr1D 97.257 1130 13 1 2872 3983 276512390 276511261 0.000000e+00 1899.0
34 TraesCS4D01G246200 chr1D 96.917 1103 26 2 1699 2794 276513487 276512386 0.000000e+00 1842.0
35 TraesCS4D01G246200 chr1D 96.712 1095 26 3 1707 2794 414481957 414480866 0.000000e+00 1814.0
36 TraesCS4D01G246200 chr1D 98.496 133 2 0 4428 4560 276511264 276511132 7.630000e-58 235.0
37 TraesCS4D01G246200 chr1D 97.778 135 3 0 4426 4560 276510735 276510601 2.740000e-57 233.0
38 TraesCS4D01G246200 chr1D 96.992 133 4 0 4428 4560 276510684 276510552 1.650000e-54 224.0
39 TraesCS4D01G246200 chr4B 97.377 610 16 0 780 1389 510876454 510875845 0.000000e+00 1038.0
40 TraesCS4D01G246200 chr4B 94.604 278 15 0 1398 1675 510851938 510851661 9.060000e-117 431.0
41 TraesCS4D01G246200 chr4B 95.833 72 3 0 1 72 510876509 510876438 2.880000e-22 117.0
42 TraesCS4D01G246200 chr4B 97.727 44 0 1 1662 1704 510849534 510849491 1.760000e-09 75.0
43 TraesCS4D01G246200 chr1B 94.453 649 31 2 128 772 269218903 269218256 0.000000e+00 994.0
44 TraesCS4D01G246200 chr1B 93.519 648 36 3 128 771 25227752 25227107 0.000000e+00 959.0
45 TraesCS4D01G246200 chr1B 93.385 650 38 2 128 773 636663164 636662516 0.000000e+00 957.0
46 TraesCS4D01G246200 chr1B 93.262 653 39 2 128 775 644278200 644278852 0.000000e+00 957.0
47 TraesCS4D01G246200 chr6B 93.818 647 35 2 128 770 21063405 21064050 0.000000e+00 968.0
48 TraesCS4D01G246200 chr3A 93.653 646 36 2 128 769 735598889 735599533 0.000000e+00 961.0
49 TraesCS4D01G246200 chr4A 92.163 319 17 8 3670 3983 692366652 692366967 1.160000e-120 444.0
50 TraesCS4D01G246200 chr4A 92.920 226 16 0 1480 1705 48886859 48887084 3.400000e-86 329.0
51 TraesCS4D01G246200 chr5B 87.037 324 28 12 3670 3983 692284459 692284778 2.020000e-93 353.0
52 TraesCS4D01G246200 chrUn 76.259 139 31 2 2256 2393 112556088 112555951 6.330000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G246200 chr4D 414633248 414637807 4559 True 3803.000000 7356 100.00000 1 4560 2 chr4D.!!$R2 4559
1 TraesCS4D01G246200 chr4D 469101971 469104303 2332 False 1006.000000 1788 97.08500 1706 4560 2 chr4D.!!$F1 2854
2 TraesCS4D01G246200 chr4D 8274416 8275062 646 True 963.000000 963 93.68300 131 772 1 chr4D.!!$R1 641
3 TraesCS4D01G246200 chr7D 370963948 370966230 2282 True 3663.000000 3663 95.69900 1707 3983 1 chr7D.!!$R1 2276
4 TraesCS4D01G246200 chr7D 510432827 510435082 2255 True 822.500000 1275 91.21950 1707 3983 2 chr7D.!!$R2 2276
5 TraesCS4D01G246200 chr2D 459830858 459833111 2253 False 3585.000000 3585 95.28400 1707 3983 1 chr2D.!!$F2 2276
6 TraesCS4D01G246200 chr2D 155547179 155549163 1984 True 3326.000000 3326 96.85300 1706 3700 1 chr2D.!!$R1 1994
7 TraesCS4D01G246200 chr2D 114802129 114803325 1196 False 1947.000000 1947 96.08700 1707 2899 1 chr2D.!!$F1 1192
8 TraesCS4D01G246200 chr2D 632022310 632025044 2734 True 1254.333333 3315 95.62800 1704 4560 3 chr2D.!!$R2 2856
9 TraesCS4D01G246200 chr6D 81148271 81150542 2271 True 3579.000000 3579 95.14900 1707 3983 1 chr6D.!!$R1 2276
10 TraesCS4D01G246200 chr6D 445321316 445322122 806 False 1158.000000 1158 92.59700 3170 3983 1 chr6D.!!$F1 813
11 TraesCS4D01G246200 chr3D 114395333 114397633 2300 True 3550.000000 3550 94.69800 1703 3983 1 chr3D.!!$R1 2280
12 TraesCS4D01G246200 chr3D 595951432 595953695 2263 True 3546.000000 3546 94.90400 1706 3983 1 chr3D.!!$R2 2277
13 TraesCS4D01G246200 chr3D 559108841 559109490 649 False 981.000000 981 94.00900 128 774 1 chr3D.!!$F1 646
14 TraesCS4D01G246200 chr7A 732100673 732102923 2250 True 3367.000000 3367 93.58900 1706 3983 1 chr7A.!!$R2 2277
15 TraesCS4D01G246200 chr7A 652923889 652925920 2031 False 3273.000000 3273 95.96500 1980 3983 1 chr7A.!!$F1 2003
16 TraesCS4D01G246200 chr1A 1315709 1317947 2238 False 3345.000000 3345 93.49600 1707 3983 1 chr1A.!!$F1 2276
17 TraesCS4D01G246200 chr7B 598647251 598648511 1260 True 2097.000000 2097 96.67700 2723 3983 1 chr7B.!!$R3 1260
18 TraesCS4D01G246200 chr7B 598615030 598616290 1260 True 2091.000000 2091 96.59800 2723 3983 1 chr7B.!!$R2 1260
19 TraesCS4D01G246200 chr7B 451086131 451087358 1227 False 1792.000000 1792 92.76700 2720 3983 1 chr7B.!!$F1 1263
20 TraesCS4D01G246200 chr7B 74092675 74093313 638 True 966.000000 966 94.05300 131 765 1 chr7B.!!$R1 634
21 TraesCS4D01G246200 chr5D 58671701 58672898 1197 True 1975.000000 1975 96.50300 1707 2899 1 chr5D.!!$R1 1192
22 TraesCS4D01G246200 chr5D 384156469 384159656 3187 False 912.500000 1877 97.01125 1707 4560 4 chr5D.!!$F1 2853
23 TraesCS4D01G246200 chr1D 414480866 414481957 1091 True 1814.000000 1814 96.71200 1707 2794 1 chr1D.!!$R1 1087
24 TraesCS4D01G246200 chr1D 276510552 276513487 2935 True 886.600000 1899 97.48800 1699 4560 5 chr1D.!!$R2 2861
25 TraesCS4D01G246200 chr4B 510875845 510876509 664 True 577.500000 1038 96.60500 1 1389 2 chr4B.!!$R2 1388
26 TraesCS4D01G246200 chr4B 510849491 510851938 2447 True 253.000000 431 96.16550 1398 1704 2 chr4B.!!$R1 306
27 TraesCS4D01G246200 chr1B 269218256 269218903 647 True 994.000000 994 94.45300 128 772 1 chr1B.!!$R2 644
28 TraesCS4D01G246200 chr1B 25227107 25227752 645 True 959.000000 959 93.51900 128 771 1 chr1B.!!$R1 643
29 TraesCS4D01G246200 chr1B 636662516 636663164 648 True 957.000000 957 93.38500 128 773 1 chr1B.!!$R3 645
30 TraesCS4D01G246200 chr1B 644278200 644278852 652 False 957.000000 957 93.26200 128 775 1 chr1B.!!$F1 647
31 TraesCS4D01G246200 chr6B 21063405 21064050 645 False 968.000000 968 93.81800 128 770 1 chr6B.!!$F1 642
32 TraesCS4D01G246200 chr3A 735598889 735599533 644 False 961.000000 961 93.65300 128 769 1 chr3A.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 693 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.0 0.0 0.0 0.0 4.18 F
690 694 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.0 0.0 0.0 0.0 3.36 F
1828 3973 0.385390 AAAAAGCACTGAACAGCCGG 59.615 50.0 0.0 0.0 0.0 6.13 F
1958 4103 1.102222 GTCGGTCCTATCGGTGCTCT 61.102 60.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1546 0.183492 TGCCAAAACAGGACAGAGCT 59.817 50.000 0.0 0.0 0.00 4.09 R
1948 4093 0.323816 TCTGTCTGGAGAGCACCGAT 60.324 55.000 0.0 0.0 0.00 4.18 R
3315 5709 1.239347 GCTCTTCAACTGGTCAACCC 58.761 55.000 0.0 0.0 34.29 4.11 R
3935 7706 1.076923 ATCTAGGGTGCCTCGACGT 60.077 57.895 0.0 0.0 34.61 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.184541 GCGATACAACTTCACGTACCAT 58.815 45.455 0.00 0.00 0.00 3.55
72 73 6.906157 ACCTCTTAAATCATGCCCATATTG 57.094 37.500 0.00 0.00 0.00 1.90
73 74 5.244626 ACCTCTTAAATCATGCCCATATTGC 59.755 40.000 0.00 0.00 0.00 3.56
74 75 5.375417 TCTTAAATCATGCCCATATTGCG 57.625 39.130 0.00 0.00 0.00 4.85
75 76 4.826733 TCTTAAATCATGCCCATATTGCGT 59.173 37.500 0.00 0.00 0.00 5.24
76 77 3.648339 AAATCATGCCCATATTGCGTC 57.352 42.857 0.00 0.00 0.00 5.19
77 78 2.275134 ATCATGCCCATATTGCGTCA 57.725 45.000 0.00 0.00 0.00 4.35
78 79 2.049888 TCATGCCCATATTGCGTCAA 57.950 45.000 0.00 0.00 0.00 3.18
79 80 2.373224 TCATGCCCATATTGCGTCAAA 58.627 42.857 0.00 0.00 0.00 2.69
80 81 2.358582 TCATGCCCATATTGCGTCAAAG 59.641 45.455 0.00 0.00 0.00 2.77
81 82 2.121291 TGCCCATATTGCGTCAAAGA 57.879 45.000 0.00 0.00 0.00 2.52
82 83 2.653726 TGCCCATATTGCGTCAAAGAT 58.346 42.857 0.00 0.00 0.00 2.40
83 84 3.814625 TGCCCATATTGCGTCAAAGATA 58.185 40.909 0.00 0.00 0.00 1.98
84 85 3.563808 TGCCCATATTGCGTCAAAGATAC 59.436 43.478 0.00 0.00 0.00 2.24
85 86 3.815401 GCCCATATTGCGTCAAAGATACT 59.185 43.478 0.00 0.00 0.00 2.12
86 87 4.994852 GCCCATATTGCGTCAAAGATACTA 59.005 41.667 0.00 0.00 0.00 1.82
87 88 5.643777 GCCCATATTGCGTCAAAGATACTAT 59.356 40.000 0.00 0.00 0.00 2.12
88 89 6.149474 GCCCATATTGCGTCAAAGATACTATT 59.851 38.462 0.00 0.00 0.00 1.73
89 90 7.624344 GCCCATATTGCGTCAAAGATACTATTC 60.624 40.741 0.00 0.00 0.00 1.75
90 91 7.387673 CCCATATTGCGTCAAAGATACTATTCA 59.612 37.037 0.00 0.00 0.00 2.57
91 92 8.223769 CCATATTGCGTCAAAGATACTATTCAC 58.776 37.037 0.00 0.00 0.00 3.18
92 93 5.696260 TTGCGTCAAAGATACTATTCACG 57.304 39.130 0.00 0.00 0.00 4.35
93 94 4.109766 TGCGTCAAAGATACTATTCACGG 58.890 43.478 0.00 0.00 0.00 4.94
94 95 4.142337 TGCGTCAAAGATACTATTCACGGA 60.142 41.667 0.00 0.00 0.00 4.69
95 96 4.802039 GCGTCAAAGATACTATTCACGGAA 59.198 41.667 0.00 0.00 0.00 4.30
96 97 5.290158 GCGTCAAAGATACTATTCACGGAAA 59.710 40.000 0.00 0.00 0.00 3.13
97 98 6.693342 CGTCAAAGATACTATTCACGGAAAC 58.307 40.000 0.00 0.00 0.00 2.78
98 99 6.530534 CGTCAAAGATACTATTCACGGAAACT 59.469 38.462 0.00 0.00 0.00 2.66
99 100 7.063074 CGTCAAAGATACTATTCACGGAAACTT 59.937 37.037 0.00 0.00 0.00 2.66
100 101 8.381387 GTCAAAGATACTATTCACGGAAACTTC 58.619 37.037 0.00 0.00 0.00 3.01
101 102 8.311836 TCAAAGATACTATTCACGGAAACTTCT 58.688 33.333 0.00 0.00 0.00 2.85
102 103 8.596380 CAAAGATACTATTCACGGAAACTTCTC 58.404 37.037 0.00 0.00 0.00 2.87
103 104 7.648039 AGATACTATTCACGGAAACTTCTCT 57.352 36.000 0.00 0.00 0.00 3.10
104 105 8.068892 AGATACTATTCACGGAAACTTCTCTT 57.931 34.615 0.00 0.00 0.00 2.85
105 106 9.186837 AGATACTATTCACGGAAACTTCTCTTA 57.813 33.333 0.00 0.00 0.00 2.10
106 107 9.798994 GATACTATTCACGGAAACTTCTCTTAA 57.201 33.333 0.00 0.00 0.00 1.85
108 109 8.535690 ACTATTCACGGAAACTTCTCTTAAAG 57.464 34.615 0.00 0.00 0.00 1.85
109 110 5.668558 TTCACGGAAACTTCTCTTAAAGC 57.331 39.130 0.00 0.00 0.00 3.51
110 111 4.062991 TCACGGAAACTTCTCTTAAAGCC 58.937 43.478 0.00 0.00 0.00 4.35
111 112 3.813166 CACGGAAACTTCTCTTAAAGCCA 59.187 43.478 0.00 0.00 0.00 4.75
112 113 4.455877 CACGGAAACTTCTCTTAAAGCCAT 59.544 41.667 0.00 0.00 0.00 4.40
113 114 5.048713 CACGGAAACTTCTCTTAAAGCCATT 60.049 40.000 0.00 0.00 0.00 3.16
114 115 5.181433 ACGGAAACTTCTCTTAAAGCCATTC 59.819 40.000 0.00 0.00 0.00 2.67
115 116 5.181245 CGGAAACTTCTCTTAAAGCCATTCA 59.819 40.000 0.00 0.00 0.00 2.57
116 117 6.293955 CGGAAACTTCTCTTAAAGCCATTCAA 60.294 38.462 0.00 0.00 0.00 2.69
117 118 7.575720 CGGAAACTTCTCTTAAAGCCATTCAAT 60.576 37.037 0.00 0.00 0.00 2.57
118 119 8.090831 GGAAACTTCTCTTAAAGCCATTCAATT 58.909 33.333 0.00 0.00 0.00 2.32
120 121 9.914131 AAACTTCTCTTAAAGCCATTCAATTAC 57.086 29.630 0.00 0.00 0.00 1.89
121 122 8.870075 ACTTCTCTTAAAGCCATTCAATTACT 57.130 30.769 0.00 0.00 0.00 2.24
122 123 9.301897 ACTTCTCTTAAAGCCATTCAATTACTT 57.698 29.630 0.00 0.00 0.00 2.24
125 126 9.396022 TCTCTTAAAGCCATTCAATTACTTAGG 57.604 33.333 0.00 0.00 0.00 2.69
126 127 8.519799 TCTTAAAGCCATTCAATTACTTAGGG 57.480 34.615 0.00 0.00 0.00 3.53
142 143 1.307430 GGGCCTCCTCCTCCTTCTT 60.307 63.158 0.84 0.00 0.00 2.52
143 144 0.916845 GGGCCTCCTCCTCCTTCTTT 60.917 60.000 0.84 0.00 0.00 2.52
171 172 3.117663 AGAAAGTTAGGGTTTGTGCCTCA 60.118 43.478 0.00 0.00 0.00 3.86
258 262 4.408396 TAAGGGCCGGCTGGAGGA 62.408 66.667 28.56 4.15 37.49 3.71
323 327 1.676529 CTATTCAGGAAGGCGAGACGA 59.323 52.381 0.00 0.00 0.00 4.20
424 428 4.436998 GGAGGTGTGTCTCCGGCG 62.437 72.222 0.00 0.00 43.19 6.46
449 453 5.178096 TCTATCTTTGGTGGATTTGCTCA 57.822 39.130 0.00 0.00 0.00 4.26
472 476 1.866601 TCTCGTCGTTGTTCGTCTACA 59.133 47.619 0.00 0.00 40.80 2.74
576 580 0.669625 GGCCTTAGCACGACGACTTT 60.670 55.000 0.00 0.00 42.56 2.66
580 584 2.351447 CCTTAGCACGACGACTTTCTGA 60.351 50.000 0.00 0.00 0.00 3.27
581 585 2.327081 TAGCACGACGACTTTCTGAC 57.673 50.000 0.00 0.00 0.00 3.51
582 586 0.669077 AGCACGACGACTTTCTGACT 59.331 50.000 0.00 0.00 0.00 3.41
583 587 0.778815 GCACGACGACTTTCTGACTG 59.221 55.000 0.00 0.00 0.00 3.51
584 588 1.864435 GCACGACGACTTTCTGACTGT 60.864 52.381 0.00 0.00 0.00 3.55
585 589 2.044860 CACGACGACTTTCTGACTGTC 58.955 52.381 0.00 0.00 0.00 3.51
586 590 1.948145 ACGACGACTTTCTGACTGTCT 59.052 47.619 9.51 0.00 0.00 3.41
587 591 3.059120 CACGACGACTTTCTGACTGTCTA 60.059 47.826 9.51 0.00 0.00 2.59
588 592 3.059051 ACGACGACTTTCTGACTGTCTAC 60.059 47.826 9.51 0.00 0.00 2.59
589 593 3.186817 CGACGACTTTCTGACTGTCTACT 59.813 47.826 9.51 0.00 0.00 2.57
590 594 4.388165 CGACGACTTTCTGACTGTCTACTA 59.612 45.833 9.51 0.00 0.00 1.82
591 595 5.610235 ACGACTTTCTGACTGTCTACTAC 57.390 43.478 9.51 0.00 0.00 2.73
592 596 5.061853 ACGACTTTCTGACTGTCTACTACA 58.938 41.667 9.51 0.00 36.42 2.74
593 597 5.530171 ACGACTTTCTGACTGTCTACTACAA 59.470 40.000 9.51 0.00 37.74 2.41
594 598 5.852229 CGACTTTCTGACTGTCTACTACAAC 59.148 44.000 9.51 0.00 37.74 3.32
595 599 6.512903 CGACTTTCTGACTGTCTACTACAACA 60.513 42.308 9.51 0.00 37.74 3.33
596 600 7.108841 ACTTTCTGACTGTCTACTACAACAA 57.891 36.000 9.51 0.00 37.74 2.83
597 601 7.203910 ACTTTCTGACTGTCTACTACAACAAG 58.796 38.462 9.51 0.00 37.74 3.16
598 602 6.710597 TTCTGACTGTCTACTACAACAAGT 57.289 37.500 9.51 0.00 37.74 3.16
599 603 6.710597 TCTGACTGTCTACTACAACAAGTT 57.289 37.500 9.51 0.00 37.74 2.66
600 604 6.504398 TCTGACTGTCTACTACAACAAGTTG 58.496 40.000 11.16 11.16 45.58 3.16
609 613 2.404083 CAACAAGTTGTGCCCGACT 58.596 52.632 9.79 0.00 36.86 4.18
610 614 0.307760 CAACAAGTTGTGCCCGACTC 59.692 55.000 9.79 0.00 34.00 3.36
611 615 0.818040 AACAAGTTGTGCCCGACTCC 60.818 55.000 9.79 0.00 34.00 3.85
612 616 2.030562 AAGTTGTGCCCGACTCCG 59.969 61.111 0.00 0.00 34.00 4.63
629 633 4.996434 GGCGATGGAGGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
630 634 3.928779 GCGATGGAGGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
631 635 2.029666 CGATGGAGGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
632 636 2.029666 GATGGAGGGGCGATGACG 59.970 66.667 0.00 0.00 42.93 4.35
633 637 3.521529 GATGGAGGGGCGATGACGG 62.522 68.421 0.00 0.00 40.15 4.79
657 661 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
658 662 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
659 663 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
660 664 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
661 665 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
662 666 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
663 667 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
664 668 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
665 669 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
666 670 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
667 671 1.937108 GCTCGCTTCAGTGCTTGTAGT 60.937 52.381 0.00 0.00 0.00 2.73
668 672 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
669 673 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
670 674 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
671 675 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
672 676 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
673 677 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
674 678 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
675 679 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
676 680 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
677 681 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
678 682 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
679 683 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
680 684 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
681 685 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
682 686 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
683 687 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
684 688 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
685 689 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
686 690 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
687 691 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
688 692 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
689 693 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
690 694 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
691 695 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
692 696 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
693 697 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
694 698 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
695 699 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
696 700 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
697 701 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
698 702 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
699 703 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
700 704 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
701 705 5.475909 GTGGTCTACGGATCTGGATGTAATA 59.524 44.000 6.47 0.00 0.00 0.98
702 706 6.153000 GTGGTCTACGGATCTGGATGTAATAT 59.847 42.308 6.47 0.00 0.00 1.28
703 707 6.724441 TGGTCTACGGATCTGGATGTAATATT 59.276 38.462 6.47 0.00 0.00 1.28
704 708 7.234782 TGGTCTACGGATCTGGATGTAATATTT 59.765 37.037 6.47 0.00 0.00 1.40
705 709 8.746530 GGTCTACGGATCTGGATGTAATATTTA 58.253 37.037 6.47 0.00 0.00 1.40
724 728 5.699097 TTTATTTCTGGTGTTGTACTGCC 57.301 39.130 0.00 0.00 0.00 4.85
725 729 2.719531 TTTCTGGTGTTGTACTGCCA 57.280 45.000 0.00 0.00 0.00 4.92
726 730 2.949177 TTCTGGTGTTGTACTGCCAT 57.051 45.000 0.00 0.00 0.00 4.40
727 731 2.183478 TCTGGTGTTGTACTGCCATG 57.817 50.000 0.00 0.00 0.00 3.66
728 732 1.696884 TCTGGTGTTGTACTGCCATGA 59.303 47.619 0.00 0.00 0.00 3.07
729 733 2.305635 TCTGGTGTTGTACTGCCATGAT 59.694 45.455 0.00 0.00 0.00 2.45
730 734 3.084039 CTGGTGTTGTACTGCCATGATT 58.916 45.455 0.00 0.00 0.00 2.57
731 735 2.819019 TGGTGTTGTACTGCCATGATTG 59.181 45.455 0.00 0.00 0.00 2.67
732 736 3.081061 GGTGTTGTACTGCCATGATTGA 58.919 45.455 0.00 0.00 0.00 2.57
733 737 3.505680 GGTGTTGTACTGCCATGATTGAA 59.494 43.478 0.00 0.00 0.00 2.69
734 738 4.379813 GGTGTTGTACTGCCATGATTGAAG 60.380 45.833 0.00 0.00 0.00 3.02
735 739 4.455533 GTGTTGTACTGCCATGATTGAAGA 59.544 41.667 0.00 0.00 0.00 2.87
736 740 5.124457 GTGTTGTACTGCCATGATTGAAGAT 59.876 40.000 0.00 0.00 0.00 2.40
737 741 5.124297 TGTTGTACTGCCATGATTGAAGATG 59.876 40.000 0.00 0.00 0.00 2.90
738 742 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
739 743 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
740 744 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
741 745 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
742 746 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
743 747 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
744 748 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
745 749 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
746 750 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
747 751 7.722285 TGCCATGATTGAAGATGAATAGATTGA 59.278 33.333 0.00 0.00 0.00 2.57
748 752 8.573885 GCCATGATTGAAGATGAATAGATTGAA 58.426 33.333 0.00 0.00 0.00 2.69
758 762 9.846248 AAGATGAATAGATTGAAAGTTTTTCCG 57.154 29.630 0.00 0.00 0.00 4.30
759 763 9.231297 AGATGAATAGATTGAAAGTTTTTCCGA 57.769 29.630 0.00 0.00 0.00 4.55
760 764 9.840427 GATGAATAGATTGAAAGTTTTTCCGAA 57.160 29.630 0.00 0.00 0.00 4.30
803 807 3.686227 TCATGCCCATATTTCCCAGTT 57.314 42.857 0.00 0.00 0.00 3.16
863 867 2.238942 TTGAGAGCGAACTTCAGCAA 57.761 45.000 7.88 0.00 35.48 3.91
866 870 1.724082 GAGAGCGAACTTCAGCAAGTC 59.276 52.381 7.88 0.00 42.45 3.01
888 892 7.234355 AGTCAGAAACCTCATCCTACATTTTT 58.766 34.615 0.00 0.00 0.00 1.94
915 919 6.155221 TGCTGAGACTGGAGTGAATATTAAGT 59.845 38.462 0.00 0.00 0.00 2.24
961 965 7.610692 CCCTATCAATGTATCTGATGCTCAAAT 59.389 37.037 7.26 0.02 35.21 2.32
1040 1044 5.563592 TGGACTTCATCTCAACACATCAAT 58.436 37.500 0.00 0.00 0.00 2.57
1103 1107 5.918608 AGAAAGAAGACTTGTTGAGTGCTA 58.081 37.500 0.00 0.00 39.19 3.49
1118 1122 7.119699 TGTTGAGTGCTACAATCTTTTATCCTG 59.880 37.037 0.00 0.00 29.32 3.86
1203 1207 1.954382 CTAGCACCGCTGGTCACTATA 59.046 52.381 0.00 0.00 40.10 1.31
1206 1210 1.605712 GCACCGCTGGTCACTATATCC 60.606 57.143 0.00 0.00 31.02 2.59
1287 1291 1.817099 GGCCTCCTCAAGTCGCATG 60.817 63.158 0.00 0.00 0.00 4.06
1329 1333 4.715130 AGGCACGGGGACTAGGCA 62.715 66.667 0.00 0.00 27.39 4.75
1331 1335 2.109181 GCACGGGGACTAGGCATC 59.891 66.667 0.00 0.00 0.00 3.91
1389 1393 9.733556 TCATAAAACTCTTGCATAGGTTCTTTA 57.266 29.630 0.73 1.24 0.00 1.85
1393 1397 8.635765 AAACTCTTGCATAGGTTCTTTAATCA 57.364 30.769 0.00 0.00 0.00 2.57
1394 1398 7.856145 ACTCTTGCATAGGTTCTTTAATCAG 57.144 36.000 0.00 0.00 0.00 2.90
1395 1399 6.825721 ACTCTTGCATAGGTTCTTTAATCAGG 59.174 38.462 0.00 0.00 0.00 3.86
1396 1400 6.957631 TCTTGCATAGGTTCTTTAATCAGGA 58.042 36.000 0.00 0.00 0.00 3.86
1441 1445 6.247229 TGTCTGGGAAGCTTATTATAGCAA 57.753 37.500 0.00 0.00 43.68 3.91
1447 1451 5.012893 GGAAGCTTATTATAGCAATGGCCT 58.987 41.667 3.32 0.00 43.68 5.19
1528 1532 6.409524 TTTCAAAGATCCTGCAACTTTCAT 57.590 33.333 0.00 0.00 32.59 2.57
1533 1537 5.171339 AGATCCTGCAACTTTCATAGTGT 57.829 39.130 0.00 0.00 37.12 3.55
1535 1539 2.813754 TCCTGCAACTTTCATAGTGTGC 59.186 45.455 0.00 0.00 39.36 4.57
1542 1546 5.619757 GCAACTTTCATAGTGTGCAATGCTA 60.620 40.000 6.82 0.00 39.05 3.49
1566 1570 1.270550 CTGTCCTGTTTTGGCATGACC 59.729 52.381 0.00 0.00 34.54 4.02
1591 1595 1.544825 TTGGAGCAACCCCTCTCTCG 61.545 60.000 0.00 0.00 38.00 4.04
1609 1613 3.521937 TCTCGGAAATACCCTGAATTGGT 59.478 43.478 0.00 0.00 39.97 3.67
1620 1624 4.060205 CCCTGAATTGGTTTCTTTTGCAG 58.940 43.478 0.00 0.00 35.23 4.41
1622 1626 4.746611 CCTGAATTGGTTTCTTTTGCAGTC 59.253 41.667 0.00 0.00 35.23 3.51
1624 1628 5.728471 TGAATTGGTTTCTTTTGCAGTCAA 58.272 33.333 0.00 0.00 35.23 3.18
1648 1652 2.930826 AGAGACACCACGTGGATTTT 57.069 45.000 40.21 20.77 37.94 1.82
1808 3953 4.931002 CCGTAAAATCTCTTAACCCGTTGA 59.069 41.667 0.00 0.00 0.00 3.18
1828 3973 0.385390 AAAAAGCACTGAACAGCCGG 59.615 50.000 0.00 0.00 0.00 6.13
1852 3997 2.996621 AGCCTCGTTTGATCTCTTTTCG 59.003 45.455 0.00 0.00 0.00 3.46
1958 4103 1.102222 GTCGGTCCTATCGGTGCTCT 61.102 60.000 0.00 0.00 0.00 4.09
1995 4146 1.134098 CGCCCTCTCTCTCTCTCTCTT 60.134 57.143 0.00 0.00 0.00 2.85
2138 4292 1.984288 GCGGCTCCCCTATCAAGGTT 61.984 60.000 0.00 0.00 41.89 3.50
2408 4563 2.420642 CTGTGGACTTGATGTGAGTGG 58.579 52.381 0.00 0.00 0.00 4.00
2513 4722 6.413783 TCATGTTCACTGTTCACCTAGTAA 57.586 37.500 0.00 0.00 0.00 2.24
3307 5701 5.227569 TGGATGCTGAGAACAAAGAACTA 57.772 39.130 0.00 0.00 0.00 2.24
3315 5709 6.416161 GCTGAGAACAAAGAACTAAAGCAAAG 59.584 38.462 0.00 0.00 0.00 2.77
3441 5835 3.731652 TTTGGAGTTTCACATTGCTGG 57.268 42.857 0.00 0.00 0.00 4.85
3865 6429 4.535781 TGTCACCCTAAATGATGGAATGG 58.464 43.478 0.00 0.00 0.00 3.16
3930 7701 9.793259 TGATCAAATTAGGTTATCTTGGATACC 57.207 33.333 0.00 0.00 0.00 2.73
3931 7702 8.848474 ATCAAATTAGGTTATCTTGGATACCG 57.152 34.615 0.00 0.00 35.80 4.02
3932 7703 7.798071 TCAAATTAGGTTATCTTGGATACCGT 58.202 34.615 0.00 0.00 35.80 4.83
3933 7704 7.929785 TCAAATTAGGTTATCTTGGATACCGTC 59.070 37.037 0.00 0.00 35.80 4.79
3934 7705 5.443185 TTAGGTTATCTTGGATACCGTCG 57.557 43.478 0.00 0.00 35.80 5.12
3935 7706 3.559069 AGGTTATCTTGGATACCGTCGA 58.441 45.455 0.00 0.00 35.80 4.20
3936 7707 3.317430 AGGTTATCTTGGATACCGTCGAC 59.683 47.826 5.18 5.18 35.80 4.20
3937 7708 3.294943 GTTATCTTGGATACCGTCGACG 58.705 50.000 30.33 30.33 39.44 5.12
3938 7709 1.386533 ATCTTGGATACCGTCGACGT 58.613 50.000 33.49 23.69 37.74 4.34
3939 7710 0.729116 TCTTGGATACCGTCGACGTC 59.271 55.000 33.49 24.49 37.74 4.34
3940 7711 0.588233 CTTGGATACCGTCGACGTCG 60.588 60.000 33.49 31.30 41.45 5.12
3950 7721 3.129502 CGACGTCGAGGCACCCTA 61.130 66.667 33.35 0.00 43.02 3.53
3951 7722 2.799371 GACGTCGAGGCACCCTAG 59.201 66.667 4.75 0.00 31.76 3.02
3952 7723 1.748122 GACGTCGAGGCACCCTAGA 60.748 63.158 4.75 0.00 33.03 2.43
3953 7724 1.076923 ACGTCGAGGCACCCTAGAT 60.077 57.895 4.75 0.00 37.58 1.98
3954 7725 1.360551 CGTCGAGGCACCCTAGATG 59.639 63.158 0.00 0.00 37.58 2.90
3955 7726 1.101635 CGTCGAGGCACCCTAGATGA 61.102 60.000 7.56 0.00 42.34 2.92
3956 7727 1.333177 GTCGAGGCACCCTAGATGAT 58.667 55.000 0.00 0.00 37.58 2.45
3957 7728 1.271102 GTCGAGGCACCCTAGATGATC 59.729 57.143 0.00 0.00 37.58 2.92
3958 7729 1.133482 TCGAGGCACCCTAGATGATCA 60.133 52.381 0.00 0.00 30.57 2.92
3959 7730 1.688735 CGAGGCACCCTAGATGATCAA 59.311 52.381 0.00 0.00 31.76 2.57
3960 7731 2.103094 CGAGGCACCCTAGATGATCAAA 59.897 50.000 0.00 0.00 31.76 2.69
3961 7732 3.244353 CGAGGCACCCTAGATGATCAAAT 60.244 47.826 0.00 0.00 31.76 2.32
3962 7733 4.723309 GAGGCACCCTAGATGATCAAATT 58.277 43.478 0.00 0.00 31.76 1.82
3963 7734 5.511373 CGAGGCACCCTAGATGATCAAATTA 60.511 44.000 0.00 0.00 31.76 1.40
3964 7735 5.874093 AGGCACCCTAGATGATCAAATTAG 58.126 41.667 0.00 2.17 28.47 1.73
3965 7736 5.006386 GGCACCCTAGATGATCAAATTAGG 58.994 45.833 17.39 17.39 0.00 2.69
3966 7737 5.456763 GGCACCCTAGATGATCAAATTAGGT 60.457 44.000 20.38 13.77 31.06 3.08
3967 7738 6.064717 GCACCCTAGATGATCAAATTAGGTT 58.935 40.000 20.38 10.41 31.06 3.50
3968 7739 7.224297 GCACCCTAGATGATCAAATTAGGTTA 58.776 38.462 20.38 0.50 31.06 2.85
3969 7740 7.885399 GCACCCTAGATGATCAAATTAGGTTAT 59.115 37.037 20.38 9.61 31.06 1.89
3970 7741 9.442047 CACCCTAGATGATCAAATTAGGTTATC 57.558 37.037 20.38 4.36 31.06 1.75
3971 7742 9.398921 ACCCTAGATGATCAAATTAGGTTATCT 57.601 33.333 20.38 10.12 31.06 1.98
3978 7749 8.169977 TGATCAAATTAGGTTATCTTGGATGC 57.830 34.615 0.00 0.00 0.00 3.91
3979 7750 6.959639 TCAAATTAGGTTATCTTGGATGCC 57.040 37.500 0.00 0.00 0.00 4.40
3980 7751 5.530915 TCAAATTAGGTTATCTTGGATGCCG 59.469 40.000 0.00 0.00 0.00 5.69
3981 7752 4.706842 ATTAGGTTATCTTGGATGCCGT 57.293 40.909 0.00 0.00 0.00 5.68
3982 7753 2.622064 AGGTTATCTTGGATGCCGTC 57.378 50.000 0.00 0.00 0.00 4.79
4451 8222 2.423446 GCCGAGGCACCCTAGATG 59.577 66.667 9.58 0.00 41.49 2.90
4452 8223 2.134287 GCCGAGGCACCCTAGATGA 61.134 63.158 9.58 0.00 41.49 2.92
4453 8224 1.476007 GCCGAGGCACCCTAGATGAT 61.476 60.000 9.58 0.00 41.49 2.45
4454 8225 0.605589 CCGAGGCACCCTAGATGATC 59.394 60.000 0.00 0.00 31.76 2.92
4455 8226 1.332195 CGAGGCACCCTAGATGATCA 58.668 55.000 0.00 0.00 31.76 2.92
4456 8227 1.688735 CGAGGCACCCTAGATGATCAA 59.311 52.381 0.00 0.00 31.76 2.57
4457 8228 2.103094 CGAGGCACCCTAGATGATCAAA 59.897 50.000 0.00 0.00 31.76 2.69
4458 8229 3.244353 CGAGGCACCCTAGATGATCAAAT 60.244 47.826 0.00 0.00 31.76 2.32
4459 8230 4.723309 GAGGCACCCTAGATGATCAAATT 58.277 43.478 0.00 0.00 31.76 1.82
4460 8231 5.511373 CGAGGCACCCTAGATGATCAAATTA 60.511 44.000 0.00 0.00 31.76 1.40
4461 8232 6.460103 AGGCACCCTAGATGATCAAATTAT 57.540 37.500 0.00 0.00 28.47 1.28
4462 8233 6.243900 AGGCACCCTAGATGATCAAATTATG 58.756 40.000 0.00 0.00 28.47 1.90
4463 8234 6.006449 GGCACCCTAGATGATCAAATTATGT 58.994 40.000 0.00 0.00 0.00 2.29
4464 8235 6.491403 GGCACCCTAGATGATCAAATTATGTT 59.509 38.462 0.00 0.00 0.00 2.71
4465 8236 7.665559 GGCACCCTAGATGATCAAATTATGTTA 59.334 37.037 0.00 0.00 0.00 2.41
4466 8237 9.236006 GCACCCTAGATGATCAAATTATGTTAT 57.764 33.333 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.267690 ACGTGAAGTTGTATCGCATATGTG 59.732 41.667 10.11 10.11 0.00 3.21
11 12 4.430007 ACGTGAAGTTGTATCGCATATGT 58.570 39.130 4.29 0.00 0.00 2.29
72 73 4.357142 TCCGTGAATAGTATCTTTGACGC 58.643 43.478 0.00 0.00 0.00 5.19
73 74 6.530534 AGTTTCCGTGAATAGTATCTTTGACG 59.469 38.462 0.00 0.00 0.00 4.35
74 75 7.829378 AGTTTCCGTGAATAGTATCTTTGAC 57.171 36.000 0.00 0.00 0.00 3.18
75 76 8.311836 AGAAGTTTCCGTGAATAGTATCTTTGA 58.688 33.333 0.00 0.00 0.00 2.69
76 77 8.480643 AGAAGTTTCCGTGAATAGTATCTTTG 57.519 34.615 0.00 0.00 0.00 2.77
77 78 8.532819 AGAGAAGTTTCCGTGAATAGTATCTTT 58.467 33.333 0.00 0.00 0.00 2.52
78 79 8.068892 AGAGAAGTTTCCGTGAATAGTATCTT 57.931 34.615 0.00 0.00 0.00 2.40
79 80 7.648039 AGAGAAGTTTCCGTGAATAGTATCT 57.352 36.000 0.00 0.00 0.00 1.98
80 81 9.798994 TTAAGAGAAGTTTCCGTGAATAGTATC 57.201 33.333 0.00 0.00 0.00 2.24
82 83 9.635520 CTTTAAGAGAAGTTTCCGTGAATAGTA 57.364 33.333 0.00 0.00 0.00 1.82
83 84 7.117956 GCTTTAAGAGAAGTTTCCGTGAATAGT 59.882 37.037 0.00 0.00 0.00 2.12
84 85 7.413109 GGCTTTAAGAGAAGTTTCCGTGAATAG 60.413 40.741 0.00 0.00 0.00 1.73
85 86 6.370718 GGCTTTAAGAGAAGTTTCCGTGAATA 59.629 38.462 0.00 0.00 0.00 1.75
86 87 5.181433 GGCTTTAAGAGAAGTTTCCGTGAAT 59.819 40.000 0.00 0.00 0.00 2.57
87 88 4.514066 GGCTTTAAGAGAAGTTTCCGTGAA 59.486 41.667 0.00 0.00 0.00 3.18
88 89 4.062991 GGCTTTAAGAGAAGTTTCCGTGA 58.937 43.478 0.00 0.00 0.00 4.35
89 90 3.813166 TGGCTTTAAGAGAAGTTTCCGTG 59.187 43.478 0.00 0.00 0.00 4.94
90 91 4.081322 TGGCTTTAAGAGAAGTTTCCGT 57.919 40.909 0.00 0.00 0.00 4.69
91 92 5.181245 TGAATGGCTTTAAGAGAAGTTTCCG 59.819 40.000 0.00 0.00 0.00 4.30
92 93 6.575162 TGAATGGCTTTAAGAGAAGTTTCC 57.425 37.500 0.00 0.00 0.00 3.13
94 95 9.914131 GTAATTGAATGGCTTTAAGAGAAGTTT 57.086 29.630 0.00 0.00 0.00 2.66
95 96 9.301897 AGTAATTGAATGGCTTTAAGAGAAGTT 57.698 29.630 0.00 0.00 0.00 2.66
96 97 8.870075 AGTAATTGAATGGCTTTAAGAGAAGT 57.130 30.769 0.00 0.00 0.00 3.01
99 100 9.396022 CCTAAGTAATTGAATGGCTTTAAGAGA 57.604 33.333 0.00 0.00 0.00 3.10
100 101 8.624776 CCCTAAGTAATTGAATGGCTTTAAGAG 58.375 37.037 0.00 0.00 0.00 2.85
101 102 7.068226 GCCCTAAGTAATTGAATGGCTTTAAGA 59.932 37.037 0.00 0.00 34.83 2.10
102 103 7.203218 GCCCTAAGTAATTGAATGGCTTTAAG 58.797 38.462 0.00 0.00 34.83 1.85
103 104 6.097696 GGCCCTAAGTAATTGAATGGCTTTAA 59.902 38.462 0.00 0.00 37.76 1.52
104 105 5.596772 GGCCCTAAGTAATTGAATGGCTTTA 59.403 40.000 0.00 0.00 37.76 1.85
105 106 4.405680 GGCCCTAAGTAATTGAATGGCTTT 59.594 41.667 0.00 0.00 37.76 3.51
106 107 3.960755 GGCCCTAAGTAATTGAATGGCTT 59.039 43.478 0.00 1.32 37.76 4.35
107 108 3.205282 AGGCCCTAAGTAATTGAATGGCT 59.795 43.478 0.00 0.00 37.76 4.75
108 109 3.566351 AGGCCCTAAGTAATTGAATGGC 58.434 45.455 0.00 0.00 36.92 4.40
109 110 4.141158 AGGAGGCCCTAAGTAATTGAATGG 60.141 45.833 0.00 0.00 42.15 3.16
110 111 5.053978 AGGAGGCCCTAAGTAATTGAATG 57.946 43.478 0.00 0.00 42.15 2.67
111 112 4.104897 GGAGGAGGCCCTAAGTAATTGAAT 59.895 45.833 0.00 0.00 44.53 2.57
112 113 3.458487 GGAGGAGGCCCTAAGTAATTGAA 59.542 47.826 0.00 0.00 44.53 2.69
113 114 3.046374 GGAGGAGGCCCTAAGTAATTGA 58.954 50.000 0.00 0.00 44.53 2.57
114 115 3.049344 AGGAGGAGGCCCTAAGTAATTG 58.951 50.000 0.00 0.00 44.53 2.32
115 116 3.319220 GAGGAGGAGGCCCTAAGTAATT 58.681 50.000 0.00 0.00 44.53 1.40
116 117 2.428038 GGAGGAGGAGGCCCTAAGTAAT 60.428 54.545 0.00 0.00 44.53 1.89
117 118 1.062352 GGAGGAGGAGGCCCTAAGTAA 60.062 57.143 0.00 0.00 44.53 2.24
118 119 0.561680 GGAGGAGGAGGCCCTAAGTA 59.438 60.000 0.00 0.00 44.53 2.24
119 120 1.232461 AGGAGGAGGAGGCCCTAAGT 61.232 60.000 0.00 0.00 44.53 2.24
120 121 0.030603 AAGGAGGAGGAGGCCCTAAG 60.031 60.000 0.00 0.00 44.53 2.18
121 122 0.031010 GAAGGAGGAGGAGGCCCTAA 60.031 60.000 0.00 0.00 44.53 2.69
122 123 0.931757 AGAAGGAGGAGGAGGCCCTA 60.932 60.000 0.00 0.00 44.53 3.53
124 125 0.916845 AAAGAAGGAGGAGGAGGCCC 60.917 60.000 0.00 0.00 0.00 5.80
125 126 1.880941 TAAAGAAGGAGGAGGAGGCC 58.119 55.000 0.00 0.00 0.00 5.19
126 127 3.108376 TCTTAAAGAAGGAGGAGGAGGC 58.892 50.000 0.00 0.00 33.09 4.70
142 143 7.417003 GGCACAAACCCTAACTTTCTTTCTTAA 60.417 37.037 0.00 0.00 0.00 1.85
143 144 6.040054 GGCACAAACCCTAACTTTCTTTCTTA 59.960 38.462 0.00 0.00 0.00 2.10
191 192 3.461773 CCACCGGAGATGAGGCGT 61.462 66.667 9.46 0.00 0.00 5.68
198 199 2.122813 CCTAGGGCCACCGGAGAT 60.123 66.667 9.46 0.00 43.47 2.75
424 428 5.136105 AGCAAATCCACCAAAGATAGATCC 58.864 41.667 0.00 0.00 0.00 3.36
449 453 1.805345 AGACGAACAACGACGAGATCT 59.195 47.619 0.00 0.00 45.77 2.75
472 476 1.871039 CCAAACCGAAGACACACGAAT 59.129 47.619 0.00 0.00 0.00 3.34
501 505 5.575606 CCGCCGATGAATAATAACGTAGATT 59.424 40.000 0.00 0.00 0.00 2.40
514 518 3.202001 CAACCGCCGCCGATGAAT 61.202 61.111 0.00 0.00 36.29 2.57
576 580 6.096423 ACAACTTGTTGTAGTAGACAGTCAGA 59.904 38.462 16.35 0.00 39.88 3.27
580 584 4.809426 GCACAACTTGTTGTAGTAGACAGT 59.191 41.667 17.26 0.00 39.88 3.55
581 585 4.211374 GGCACAACTTGTTGTAGTAGACAG 59.789 45.833 17.26 5.63 39.88 3.51
582 586 4.124238 GGCACAACTTGTTGTAGTAGACA 58.876 43.478 17.26 0.00 35.78 3.41
583 587 3.497262 GGGCACAACTTGTTGTAGTAGAC 59.503 47.826 17.26 8.51 33.17 2.59
584 588 3.735591 GGGCACAACTTGTTGTAGTAGA 58.264 45.455 17.26 0.00 33.17 2.59
585 589 2.478894 CGGGCACAACTTGTTGTAGTAG 59.521 50.000 17.26 7.80 33.17 2.57
586 590 2.102757 TCGGGCACAACTTGTTGTAGTA 59.897 45.455 17.26 1.74 33.17 1.82
587 591 1.134340 TCGGGCACAACTTGTTGTAGT 60.134 47.619 17.26 0.00 33.17 2.73
588 592 1.263217 GTCGGGCACAACTTGTTGTAG 59.737 52.381 17.26 12.96 33.17 2.74
589 593 1.134340 AGTCGGGCACAACTTGTTGTA 60.134 47.619 17.26 1.01 33.17 2.41
590 594 0.393808 AGTCGGGCACAACTTGTTGT 60.394 50.000 12.73 12.73 35.14 3.32
591 595 0.307760 GAGTCGGGCACAACTTGTTG 59.692 55.000 11.44 11.44 0.00 3.33
592 596 0.818040 GGAGTCGGGCACAACTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
593 597 1.227853 GGAGTCGGGCACAACTTGT 60.228 57.895 0.00 0.00 0.00 3.16
594 598 2.317609 CGGAGTCGGGCACAACTTG 61.318 63.158 0.00 0.00 0.00 3.16
595 599 2.030562 CGGAGTCGGGCACAACTT 59.969 61.111 0.00 0.00 0.00 2.66
612 616 4.996434 CATCGCCCCTCCATCGCC 62.996 72.222 0.00 0.00 0.00 5.54
613 617 3.928779 TCATCGCCCCTCCATCGC 61.929 66.667 0.00 0.00 0.00 4.58
614 618 2.029666 GTCATCGCCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
615 619 2.029666 CGTCATCGCCCCTCCATC 59.970 66.667 0.00 0.00 0.00 3.51
616 620 3.550431 CCGTCATCGCCCCTCCAT 61.550 66.667 0.00 0.00 35.54 3.41
642 646 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
643 647 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
644 648 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
645 649 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
646 650 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
647 651 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
648 652 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
649 653 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
650 654 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
651 655 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
652 656 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
653 657 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
654 658 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
655 659 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
656 660 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
657 661 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
658 662 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
659 663 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
660 664 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
661 665 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
662 666 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
663 667 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
664 668 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
665 669 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
666 670 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
667 671 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
668 672 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
669 673 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
670 674 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
671 675 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
672 676 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
673 677 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
674 678 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
675 679 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
676 680 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
677 681 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
678 682 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
679 683 6.777213 ATATTACATCCAGATCCGTAGACC 57.223 41.667 0.00 0.00 0.00 3.85
698 702 8.466798 GGCAGTACAACACCAGAAATAAATATT 58.533 33.333 0.00 0.00 0.00 1.28
699 703 7.613801 TGGCAGTACAACACCAGAAATAAATAT 59.386 33.333 0.00 0.00 0.00 1.28
700 704 6.943146 TGGCAGTACAACACCAGAAATAAATA 59.057 34.615 0.00 0.00 0.00 1.40
701 705 5.772672 TGGCAGTACAACACCAGAAATAAAT 59.227 36.000 0.00 0.00 0.00 1.40
702 706 5.133941 TGGCAGTACAACACCAGAAATAAA 58.866 37.500 0.00 0.00 0.00 1.40
703 707 4.720046 TGGCAGTACAACACCAGAAATAA 58.280 39.130 0.00 0.00 0.00 1.40
704 708 4.359434 TGGCAGTACAACACCAGAAATA 57.641 40.909 0.00 0.00 0.00 1.40
705 709 3.222173 TGGCAGTACAACACCAGAAAT 57.778 42.857 0.00 0.00 0.00 2.17
706 710 2.719531 TGGCAGTACAACACCAGAAA 57.280 45.000 0.00 0.00 0.00 2.52
707 711 2.105649 TCATGGCAGTACAACACCAGAA 59.894 45.455 0.00 0.00 35.20 3.02
708 712 1.696884 TCATGGCAGTACAACACCAGA 59.303 47.619 0.00 0.00 35.20 3.86
709 713 2.183478 TCATGGCAGTACAACACCAG 57.817 50.000 0.00 0.00 35.20 4.00
710 714 2.819019 CAATCATGGCAGTACAACACCA 59.181 45.455 0.00 0.00 36.43 4.17
711 715 3.081061 TCAATCATGGCAGTACAACACC 58.919 45.455 0.00 0.00 0.00 4.16
712 716 4.455533 TCTTCAATCATGGCAGTACAACAC 59.544 41.667 0.00 0.00 0.00 3.32
713 717 4.650734 TCTTCAATCATGGCAGTACAACA 58.349 39.130 0.00 0.00 0.00 3.33
714 718 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
715 719 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
716 720 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
717 721 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
718 722 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
719 723 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
720 724 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
721 725 7.722285 TCAATCTATTCATCTTCAATCATGGCA 59.278 33.333 0.00 0.00 0.00 4.92
722 726 8.107399 TCAATCTATTCATCTTCAATCATGGC 57.893 34.615 0.00 0.00 0.00 4.40
732 736 9.846248 CGGAAAAACTTTCAATCTATTCATCTT 57.154 29.630 1.88 0.00 0.00 2.40
733 737 9.231297 TCGGAAAAACTTTCAATCTATTCATCT 57.769 29.630 1.88 0.00 0.00 2.90
734 738 9.840427 TTCGGAAAAACTTTCAATCTATTCATC 57.160 29.630 1.88 0.00 0.00 2.92
774 778 8.501070 TGGGAAATATGGGCATGATTTATTTTT 58.499 29.630 0.00 0.00 0.00 1.94
775 779 8.043429 TGGGAAATATGGGCATGATTTATTTT 57.957 30.769 0.00 0.00 0.00 1.82
776 780 7.293062 ACTGGGAAATATGGGCATGATTTATTT 59.707 33.333 0.00 0.22 0.00 1.40
777 781 6.788957 ACTGGGAAATATGGGCATGATTTATT 59.211 34.615 0.00 0.00 0.00 1.40
778 782 6.325352 ACTGGGAAATATGGGCATGATTTAT 58.675 36.000 0.00 0.00 0.00 1.40
779 783 5.714863 ACTGGGAAATATGGGCATGATTTA 58.285 37.500 0.00 0.00 0.00 1.40
780 784 4.559726 ACTGGGAAATATGGGCATGATTT 58.440 39.130 0.00 0.00 0.00 2.17
781 785 4.203342 ACTGGGAAATATGGGCATGATT 57.797 40.909 0.00 0.00 0.00 2.57
782 786 3.909427 ACTGGGAAATATGGGCATGAT 57.091 42.857 0.00 0.00 0.00 2.45
783 787 3.686227 AACTGGGAAATATGGGCATGA 57.314 42.857 0.00 0.00 0.00 3.07
784 788 6.423776 AAATAACTGGGAAATATGGGCATG 57.576 37.500 0.00 0.00 0.00 4.06
785 789 7.305246 ACTAAATAACTGGGAAATATGGGCAT 58.695 34.615 0.00 0.00 0.00 4.40
786 790 6.678547 ACTAAATAACTGGGAAATATGGGCA 58.321 36.000 0.00 0.00 0.00 5.36
787 791 8.739972 CATACTAAATAACTGGGAAATATGGGC 58.260 37.037 0.00 0.00 0.00 5.36
788 792 8.739972 GCATACTAAATAACTGGGAAATATGGG 58.260 37.037 0.00 0.00 0.00 4.00
789 793 9.520515 AGCATACTAAATAACTGGGAAATATGG 57.479 33.333 0.00 0.00 0.00 2.74
795 799 9.555727 GTCATTAGCATACTAAATAACTGGGAA 57.444 33.333 0.00 0.00 41.62 3.97
863 867 6.380079 AAATGTAGGATGAGGTTTCTGACT 57.620 37.500 0.00 0.00 0.00 3.41
866 870 7.533426 CAGAAAAATGTAGGATGAGGTTTCTG 58.467 38.462 8.04 8.04 42.24 3.02
888 892 2.001076 TTCACTCCAGTCTCAGCAGA 57.999 50.000 0.00 0.00 0.00 4.26
915 919 3.502979 GGGACCAACGCTAATTTGTTGTA 59.497 43.478 13.47 0.00 42.99 2.41
961 965 9.196139 CACCCCAAGATATTAATAGGTTTTGAA 57.804 33.333 1.02 0.00 0.00 2.69
1040 1044 4.830600 GGGTGAAATTCTCAGTTTTGGGTA 59.169 41.667 0.00 0.00 33.60 3.69
1103 1107 6.604795 CCTTCCATCACAGGATAAAAGATTGT 59.395 38.462 0.00 0.00 37.56 2.71
1118 1122 0.107508 TAGCTGCAGCCTTCCATCAC 60.108 55.000 34.39 3.66 43.38 3.06
1157 1161 3.629398 GCACATGAAGAAGATTGGTAGGG 59.371 47.826 0.00 0.00 0.00 3.53
1287 1291 2.354704 GGGCTTGCAAACCTTTTATCCC 60.355 50.000 18.06 5.49 0.00 3.85
1329 1333 5.426509 TGTTGTGAATCTCTGTATCCAGGAT 59.573 40.000 7.27 7.27 39.31 3.24
1331 1335 5.089970 TGTTGTGAATCTCTGTATCCAGG 57.910 43.478 0.00 0.00 39.31 4.45
1389 1393 3.652387 ACCCAAGGCAAATTTTCCTGATT 59.348 39.130 10.31 0.00 32.00 2.57
1390 1394 3.250617 ACCCAAGGCAAATTTTCCTGAT 58.749 40.909 10.31 0.00 32.00 2.90
1391 1395 2.688477 ACCCAAGGCAAATTTTCCTGA 58.312 42.857 10.31 0.00 32.00 3.86
1392 1396 3.490439 AACCCAAGGCAAATTTTCCTG 57.510 42.857 10.31 5.01 32.00 3.86
1393 1397 5.131977 AGTTTAACCCAAGGCAAATTTTCCT 59.868 36.000 3.25 3.25 0.00 3.36
1394 1398 5.373222 AGTTTAACCCAAGGCAAATTTTCC 58.627 37.500 0.00 0.00 0.00 3.13
1395 1399 6.317642 ACAAGTTTAACCCAAGGCAAATTTTC 59.682 34.615 0.00 0.00 0.00 2.29
1396 1400 6.184068 ACAAGTTTAACCCAAGGCAAATTTT 58.816 32.000 0.00 0.00 0.00 1.82
1465 1469 6.458210 AGCAAATTCTTCCACCAAAAGTATG 58.542 36.000 0.00 0.00 0.00 2.39
1528 1532 2.234661 ACAGAGCTAGCATTGCACACTA 59.765 45.455 18.83 0.00 0.00 2.74
1533 1537 0.907486 AGGACAGAGCTAGCATTGCA 59.093 50.000 18.83 0.00 0.00 4.08
1535 1539 2.687700 ACAGGACAGAGCTAGCATTG 57.312 50.000 18.83 16.39 0.00 2.82
1542 1546 0.183492 TGCCAAAACAGGACAGAGCT 59.817 50.000 0.00 0.00 0.00 4.09
1566 1570 0.698818 AGGGGTTGCTCCAACTAAGG 59.301 55.000 7.88 0.00 43.14 2.69
1591 1595 6.605471 AAGAAACCAATTCAGGGTATTTCC 57.395 37.500 0.00 0.00 40.72 3.13
1609 1613 7.445096 TGTCTCTATCATTGACTGCAAAAGAAA 59.555 33.333 0.00 0.00 37.59 2.52
1620 1624 3.859961 CACGTGGTGTCTCTATCATTGAC 59.140 47.826 7.95 0.00 0.00 3.18
1622 1626 3.119137 TCCACGTGGTGTCTCTATCATTG 60.119 47.826 32.74 2.69 36.34 2.82
1624 1628 2.735151 TCCACGTGGTGTCTCTATCAT 58.265 47.619 32.74 0.00 36.34 2.45
1648 1652 3.055385 GGTGCACCTAGAACTATGTTCCA 60.055 47.826 29.12 0.00 0.00 3.53
1701 3845 4.261197 GGTTTCTTGCAGTTGACTCGATTT 60.261 41.667 0.00 0.00 0.00 2.17
1713 3857 3.125316 CAAATGTGGTGGTTTCTTGCAG 58.875 45.455 0.00 0.00 0.00 4.41
1828 3973 5.444745 CGAAAAGAGATCAAACGAGGCTAAC 60.445 44.000 0.00 0.00 0.00 2.34
1948 4093 0.323816 TCTGTCTGGAGAGCACCGAT 60.324 55.000 0.00 0.00 0.00 4.18
1958 4103 2.764128 GCGGGGGATCTGTCTGGA 60.764 66.667 0.00 0.00 0.00 3.86
1995 4146 1.000993 GAGACAGAGGAGAGGGGCA 59.999 63.158 0.00 0.00 0.00 5.36
2059 4213 1.963855 CACGAAACCATGGCGGACA 60.964 57.895 13.04 0.00 38.63 4.02
2087 4241 1.512996 CGTAGCCCGATTCCTCGCTA 61.513 60.000 0.00 0.00 43.66 4.26
2138 4292 5.055144 CCTAGCTACGAGTACACATCACTA 58.945 45.833 0.00 0.00 0.00 2.74
2408 4563 5.853282 CACAAAATGAGCAAACTACAGCTAC 59.147 40.000 0.00 0.00 42.04 3.58
3307 5701 2.159179 ACTGGTCAACCCTTTGCTTT 57.841 45.000 0.00 0.00 34.29 3.51
3315 5709 1.239347 GCTCTTCAACTGGTCAACCC 58.761 55.000 0.00 0.00 34.29 4.11
3557 5951 6.490040 AGTTCACACATTACAAGCCATAGTTT 59.510 34.615 0.00 0.00 0.00 2.66
3865 6429 2.559668 TCGACGGTATCCAACATATCCC 59.440 50.000 0.00 0.00 0.00 3.85
3931 7702 4.773117 GGGTGCCTCGACGTCGAC 62.773 72.222 34.97 26.04 44.22 4.20
3933 7704 3.109612 CTAGGGTGCCTCGACGTCG 62.110 68.421 31.30 31.30 41.45 5.12
3934 7705 1.102222 ATCTAGGGTGCCTCGACGTC 61.102 60.000 5.18 5.18 34.61 4.34
3935 7706 1.076923 ATCTAGGGTGCCTCGACGT 60.077 57.895 0.00 0.00 34.61 4.34
3936 7707 1.101635 TCATCTAGGGTGCCTCGACG 61.102 60.000 0.00 0.00 34.61 5.12
3937 7708 1.271102 GATCATCTAGGGTGCCTCGAC 59.729 57.143 0.00 0.00 34.61 4.20
3938 7709 1.133482 TGATCATCTAGGGTGCCTCGA 60.133 52.381 0.00 0.00 34.61 4.04
3939 7710 1.332195 TGATCATCTAGGGTGCCTCG 58.668 55.000 0.00 0.00 34.61 4.63
3940 7711 3.845781 TTTGATCATCTAGGGTGCCTC 57.154 47.619 0.00 0.00 34.61 4.70
3941 7712 4.803329 AATTTGATCATCTAGGGTGCCT 57.197 40.909 0.00 0.00 37.71 4.75
3942 7713 5.006386 CCTAATTTGATCATCTAGGGTGCC 58.994 45.833 13.74 0.00 0.00 5.01
3943 7714 5.625150 ACCTAATTTGATCATCTAGGGTGC 58.375 41.667 20.88 0.00 34.58 5.01
3944 7715 9.442047 GATAACCTAATTTGATCATCTAGGGTG 57.558 37.037 19.14 4.06 34.58 4.61
3945 7716 9.398921 AGATAACCTAATTTGATCATCTAGGGT 57.601 33.333 20.88 18.59 34.58 4.34
3952 7723 8.800332 GCATCCAAGATAACCTAATTTGATCAT 58.200 33.333 0.00 0.00 0.00 2.45
3953 7724 7.231317 GGCATCCAAGATAACCTAATTTGATCA 59.769 37.037 0.00 0.00 0.00 2.92
3954 7725 7.573843 CGGCATCCAAGATAACCTAATTTGATC 60.574 40.741 0.00 0.00 0.00 2.92
3955 7726 6.207417 CGGCATCCAAGATAACCTAATTTGAT 59.793 38.462 0.00 0.00 0.00 2.57
3956 7727 5.530915 CGGCATCCAAGATAACCTAATTTGA 59.469 40.000 0.00 0.00 0.00 2.69
3957 7728 5.299279 ACGGCATCCAAGATAACCTAATTTG 59.701 40.000 0.00 0.00 0.00 2.32
3958 7729 5.445964 ACGGCATCCAAGATAACCTAATTT 58.554 37.500 0.00 0.00 0.00 1.82
3959 7730 5.048846 ACGGCATCCAAGATAACCTAATT 57.951 39.130 0.00 0.00 0.00 1.40
3960 7731 4.642429 GACGGCATCCAAGATAACCTAAT 58.358 43.478 0.00 0.00 0.00 1.73
3961 7732 4.067972 GACGGCATCCAAGATAACCTAA 57.932 45.455 0.00 0.00 0.00 2.69
3962 7733 3.746045 GACGGCATCCAAGATAACCTA 57.254 47.619 0.00 0.00 0.00 3.08
3963 7734 2.622064 GACGGCATCCAAGATAACCT 57.378 50.000 0.00 0.00 0.00 3.50
4434 8205 1.476007 ATCATCTAGGGTGCCTCGGC 61.476 60.000 0.00 0.00 42.35 5.54
4435 8206 0.605589 GATCATCTAGGGTGCCTCGG 59.394 60.000 0.00 0.00 34.61 4.63
4436 8207 1.332195 TGATCATCTAGGGTGCCTCG 58.668 55.000 0.00 0.00 34.61 4.63
4437 8208 3.845781 TTTGATCATCTAGGGTGCCTC 57.154 47.619 0.00 0.00 34.61 4.70
4438 8209 4.803329 AATTTGATCATCTAGGGTGCCT 57.197 40.909 0.00 0.00 37.71 4.75
4439 8210 6.006449 ACATAATTTGATCATCTAGGGTGCC 58.994 40.000 0.00 0.00 0.00 5.01
4440 8211 7.516198 AACATAATTTGATCATCTAGGGTGC 57.484 36.000 0.00 0.00 0.00 5.01
4451 8222 9.817365 CGACATCCAAGATAACATAATTTGATC 57.183 33.333 0.00 0.00 0.00 2.92
4452 8223 9.342308 ACGACATCCAAGATAACATAATTTGAT 57.658 29.630 0.00 0.00 0.00 2.57
4453 8224 8.731275 ACGACATCCAAGATAACATAATTTGA 57.269 30.769 0.00 0.00 0.00 2.69
4454 8225 7.793888 CGACGACATCCAAGATAACATAATTTG 59.206 37.037 0.00 0.00 0.00 2.32
4455 8226 7.709182 TCGACGACATCCAAGATAACATAATTT 59.291 33.333 0.00 0.00 0.00 1.82
4456 8227 7.169308 GTCGACGACATCCAAGATAACATAATT 59.831 37.037 22.66 0.00 32.09 1.40
4457 8228 6.641314 GTCGACGACATCCAAGATAACATAAT 59.359 38.462 22.66 0.00 32.09 1.28
4458 8229 5.975344 GTCGACGACATCCAAGATAACATAA 59.025 40.000 22.66 0.00 32.09 1.90
4459 8230 5.516996 GTCGACGACATCCAAGATAACATA 58.483 41.667 22.66 0.00 32.09 2.29
4460 8231 4.360563 GTCGACGACATCCAAGATAACAT 58.639 43.478 22.66 0.00 32.09 2.71
4461 8232 3.729762 CGTCGACGACATCCAAGATAACA 60.730 47.826 33.35 0.00 43.02 2.41
4462 8233 2.782192 CGTCGACGACATCCAAGATAAC 59.218 50.000 33.35 0.00 43.02 1.89
4463 8234 2.793585 GCGTCGACGACATCCAAGATAA 60.794 50.000 39.74 0.00 43.02 1.75
4464 8235 1.268386 GCGTCGACGACATCCAAGATA 60.268 52.381 39.74 0.00 43.02 1.98
4465 8236 0.525668 GCGTCGACGACATCCAAGAT 60.526 55.000 39.74 0.00 43.02 2.40
4466 8237 1.154093 GCGTCGACGACATCCAAGA 60.154 57.895 39.74 0.00 43.02 3.02
4467 8238 3.374330 GCGTCGACGACATCCAAG 58.626 61.111 39.74 9.55 43.02 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.