Multiple sequence alignment - TraesCS4D01G246000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G246000 chr4D 100.000 5003 0 0 1 5003 414601877 414606879 0.000000e+00 9239.0
1 TraesCS4D01G246000 chr4D 99.684 316 1 0 4688 5003 414612684 414612999 3.360000e-161 579.0
2 TraesCS4D01G246000 chr4D 80.069 582 64 33 2750 3308 414627195 414627747 7.860000e-103 385.0
3 TraesCS4D01G246000 chr4D 86.957 138 17 1 1814 1950 414624660 414624797 2.410000e-33 154.0
4 TraesCS4D01G246000 chr4D 92.308 39 1 2 3335 3372 504343794 504343757 3.000000e-03 54.7
5 TraesCS4D01G246000 chr4D 96.875 32 1 0 3335 3366 505192417 505192448 3.000000e-03 54.7
6 TraesCS4D01G246000 chr4B 92.092 3174 165 42 1 3135 510824534 510827660 0.000000e+00 4392.0
7 TraesCS4D01G246000 chr4B 90.373 1662 72 27 3336 4975 510828544 510830139 0.000000e+00 2102.0
8 TraesCS4D01G246000 chr4B 77.997 709 87 38 2629 3308 510848270 510848938 1.020000e-101 381.0
9 TraesCS4D01G246000 chr4B 84.940 166 5 3 3187 3335 510828308 510828470 3.120000e-32 150.0
10 TraesCS4D01G246000 chr4A 92.376 2912 151 28 270 3136 48908874 48905989 0.000000e+00 4082.0
11 TraesCS4D01G246000 chr4A 92.762 1644 78 15 3337 4966 48905554 48903938 0.000000e+00 2338.0
12 TraesCS4D01G246000 chr4A 90.323 62 5 1 3478 3539 48887315 48887255 4.150000e-11 80.5
13 TraesCS4D01G246000 chr4A 94.444 36 1 1 3336 3370 690615271 690615306 3.000000e-03 54.7
14 TraesCS4D01G246000 chr3D 77.129 634 82 29 2722 3328 607975937 607975340 4.860000e-80 309.0
15 TraesCS4D01G246000 chr3B 75.538 744 90 39 2613 3301 817546253 817546959 1.060000e-71 281.0
16 TraesCS4D01G246000 chr3B 76.316 570 78 30 2759 3308 817621036 817620504 8.310000e-63 252.0
17 TraesCS4D01G246000 chr2D 97.059 34 1 0 3340 3373 335686818 335686785 1.950000e-04 58.4
18 TraesCS4D01G246000 chr7A 97.059 34 0 1 3336 3368 2850640 2850673 7.000000e-04 56.5
19 TraesCS4D01G246000 chr7A 96.970 33 1 0 3336 3368 717778310 717778278 7.000000e-04 56.5
20 TraesCS4D01G246000 chr1B 96.970 33 0 1 3336 3368 639412491 639412460 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G246000 chr4D 414601877 414606879 5002 False 9239.000000 9239 100.000 1 5003 1 chr4D.!!$F1 5002
1 TraesCS4D01G246000 chr4D 414624660 414627747 3087 False 269.500000 385 83.513 1814 3308 2 chr4D.!!$F4 1494
2 TraesCS4D01G246000 chr4B 510824534 510830139 5605 False 2214.666667 4392 89.135 1 4975 3 chr4B.!!$F2 4974
3 TraesCS4D01G246000 chr4B 510848270 510848938 668 False 381.000000 381 77.997 2629 3308 1 chr4B.!!$F1 679
4 TraesCS4D01G246000 chr4A 48903938 48908874 4936 True 3210.000000 4082 92.569 270 4966 2 chr4A.!!$R2 4696
5 TraesCS4D01G246000 chr3D 607975340 607975937 597 True 309.000000 309 77.129 2722 3328 1 chr3D.!!$R1 606
6 TraesCS4D01G246000 chr3B 817546253 817546959 706 False 281.000000 281 75.538 2613 3301 1 chr3B.!!$F1 688
7 TraesCS4D01G246000 chr3B 817620504 817621036 532 True 252.000000 252 76.316 2759 3308 1 chr3B.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.172803 CCACTAAACTACTCGCGCCT 59.827 55.0 0.00 0.0 0.00 5.52 F
1086 1152 0.038890 TCAATCCATTGTTCCGGGCA 59.961 50.0 0.00 0.0 38.84 5.36 F
2737 2876 0.694771 TGCCCTGTTCAGCTGAATCT 59.305 50.0 30.65 0.0 36.33 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1098 1164 0.103937 CGTCTCTGCTCCCATCCTTC 59.896 60.0 0.0 0.0 0.00 3.46 R
3070 4908 0.320374 GATCACGACCAGGGTGAACA 59.680 55.0 0.0 0.0 46.47 3.18 R
4167 6706 0.106894 CGGCAGACTATTTCCCCCTC 59.893 60.0 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.356089 TCATTCTACCACTCCGTTGTTATAT 57.644 36.000 0.00 0.00 0.00 0.86
56 57 2.252072 TATTCGTGAGCTGGCACCCC 62.252 60.000 0.00 0.00 35.37 4.95
72 73 2.936498 CACCCCATACATTCGAACAGAC 59.064 50.000 0.00 0.00 0.00 3.51
75 76 3.369471 CCCCATACATTCGAACAGACACT 60.369 47.826 0.00 0.00 0.00 3.55
215 216 0.172803 CCACTAAACTACTCGCGCCT 59.827 55.000 0.00 0.00 0.00 5.52
261 262 3.379445 GCCTCCCGTTCGTCCAGA 61.379 66.667 0.00 0.00 0.00 3.86
339 340 1.226311 GGGACTGGATCAGGGGAAAT 58.774 55.000 0.00 0.00 35.51 2.17
340 341 2.418669 GGGACTGGATCAGGGGAAATA 58.581 52.381 0.00 0.00 35.51 1.40
341 342 2.373502 GGGACTGGATCAGGGGAAATAG 59.626 54.545 0.00 0.00 35.51 1.73
462 464 1.229723 TACCTTTCCCCCTCCGCTT 60.230 57.895 0.00 0.00 0.00 4.68
654 692 1.463375 GGCCCTTGGTGGTAAGGTT 59.537 57.895 0.00 0.00 44.65 3.50
656 694 1.075861 GGCCCTTGGTGGTAAGGTTAA 59.924 52.381 0.00 0.00 44.65 2.01
671 710 0.255033 GTTAACCGCCCTGATTCCCT 59.745 55.000 0.00 0.00 0.00 4.20
686 725 1.078214 CCCTGCCAATCTGCTCGAA 60.078 57.895 0.00 0.00 0.00 3.71
706 745 2.267188 TCCGTCGTTTGGAATAGTCG 57.733 50.000 0.00 0.00 30.98 4.18
707 746 1.541147 TCCGTCGTTTGGAATAGTCGT 59.459 47.619 0.00 0.00 30.98 4.34
708 747 1.916000 CCGTCGTTTGGAATAGTCGTC 59.084 52.381 0.00 0.00 0.00 4.20
709 748 2.415090 CCGTCGTTTGGAATAGTCGTCT 60.415 50.000 0.00 0.00 0.00 4.18
710 749 3.181507 CCGTCGTTTGGAATAGTCGTCTA 60.182 47.826 0.00 0.00 0.00 2.59
956 999 1.646912 TTCCAGTGACGGGATAACCA 58.353 50.000 5.05 0.00 40.22 3.67
957 1000 1.874129 TCCAGTGACGGGATAACCAT 58.126 50.000 0.00 0.00 40.22 3.55
1047 1113 3.241530 ACCACAGCGAGCCTTCCA 61.242 61.111 0.00 0.00 0.00 3.53
1071 1137 1.285280 TGACGGGGACTTCCATCAAT 58.715 50.000 0.00 0.00 37.91 2.57
1074 1140 0.546122 CGGGGACTTCCATCAATCCA 59.454 55.000 0.00 0.00 37.91 3.41
1086 1152 0.038890 TCAATCCATTGTTCCGGGCA 59.961 50.000 0.00 0.00 38.84 5.36
1089 1155 2.215451 ATCCATTGTTCCGGGCAGCT 62.215 55.000 0.00 0.00 0.00 4.24
1098 1164 3.499737 CGGGCAGCTTACCTTGCG 61.500 66.667 2.63 0.00 35.28 4.85
1110 1176 3.819188 CTTGCGAAGGATGGGAGC 58.181 61.111 0.00 0.00 0.00 4.70
1118 1184 1.965754 AAGGATGGGAGCAGAGACGC 61.966 60.000 0.00 0.00 0.00 5.19
1266 1332 2.029623 AGGCCATCATTCAGCATCAAC 58.970 47.619 5.01 0.00 0.00 3.18
1285 1351 5.278061 TCAACTTCTACCCTGCTAAGGTAT 58.722 41.667 1.35 0.00 42.74 2.73
1301 1367 3.725634 AGGTATACCAGTTCTTCCAGCT 58.274 45.455 23.87 0.00 38.89 4.24
1311 1377 3.817647 AGTTCTTCCAGCTCAATGTGTTC 59.182 43.478 0.00 0.00 0.00 3.18
1312 1378 3.777106 TCTTCCAGCTCAATGTGTTCT 57.223 42.857 0.00 0.00 0.00 3.01
1313 1379 4.090761 TCTTCCAGCTCAATGTGTTCTT 57.909 40.909 0.00 0.00 0.00 2.52
1314 1380 5.227569 TCTTCCAGCTCAATGTGTTCTTA 57.772 39.130 0.00 0.00 0.00 2.10
1315 1381 5.240891 TCTTCCAGCTCAATGTGTTCTTAG 58.759 41.667 0.00 0.00 0.00 2.18
1316 1382 3.942829 TCCAGCTCAATGTGTTCTTAGG 58.057 45.455 0.00 0.00 0.00 2.69
1317 1383 3.582647 TCCAGCTCAATGTGTTCTTAGGA 59.417 43.478 0.00 0.00 0.00 2.94
1318 1384 4.225942 TCCAGCTCAATGTGTTCTTAGGAT 59.774 41.667 0.00 0.00 0.00 3.24
1352 1426 2.890311 TCCATGGTTTACTTTGCACAGG 59.110 45.455 12.58 0.00 0.00 4.00
1424 1498 3.700538 ACTTTGATCCCTTGCTTGCATA 58.299 40.909 0.00 0.00 0.00 3.14
1433 1507 5.076873 TCCCTTGCTTGCATAAAGTTAAGT 58.923 37.500 0.00 0.00 38.25 2.24
1462 1536 3.581024 TGATGATTTGTTCTTGCTGGC 57.419 42.857 0.00 0.00 0.00 4.85
1515 1592 6.013466 TCTGGCAATATGTATATTCTGCCTCA 60.013 38.462 20.20 9.93 42.80 3.86
1533 1610 5.988561 TGCCTCACATTTGTAATTTGGTTTC 59.011 36.000 0.00 0.00 0.00 2.78
1558 1639 5.336293 GCTTTGAGGCTATTTGAAAGAGCTT 60.336 40.000 21.88 16.01 36.43 3.74
1576 1657 4.347607 AGCTTGGCCTTTTCTTATGATGT 58.652 39.130 3.32 0.00 0.00 3.06
1671 1752 0.905357 TTGCTGTTCTAGAGGAGCCC 59.095 55.000 17.85 0.00 0.00 5.19
1722 1803 6.128007 GGCGAAGATGGAAAAATAAGTTCAGA 60.128 38.462 0.00 0.00 0.00 3.27
1724 1805 7.573096 GCGAAGATGGAAAAATAAGTTCAGACA 60.573 37.037 0.00 0.00 0.00 3.41
1894 1976 6.681729 AACCTTCACCTCTGTTATGTAAGA 57.318 37.500 0.00 0.00 0.00 2.10
2033 2125 8.450578 AAGATCAACAAAGTTGTGATGAGTTA 57.549 30.769 9.43 0.00 41.31 2.24
2034 2126 8.092521 AGATCAACAAAGTTGTGATGAGTTAG 57.907 34.615 9.43 0.00 41.31 2.34
2035 2127 6.060028 TCAACAAAGTTGTGATGAGTTAGC 57.940 37.500 9.43 0.00 41.31 3.09
2036 2128 5.008613 TCAACAAAGTTGTGATGAGTTAGCC 59.991 40.000 9.43 0.00 41.31 3.93
2037 2129 4.718961 ACAAAGTTGTGATGAGTTAGCCT 58.281 39.130 0.00 0.00 40.49 4.58
2038 2130 5.133221 ACAAAGTTGTGATGAGTTAGCCTT 58.867 37.500 0.00 0.00 40.49 4.35
2039 2131 5.594317 ACAAAGTTGTGATGAGTTAGCCTTT 59.406 36.000 0.00 0.00 40.49 3.11
2040 2132 6.096846 ACAAAGTTGTGATGAGTTAGCCTTTT 59.903 34.615 0.00 0.00 40.49 2.27
2041 2133 6.715347 AAGTTGTGATGAGTTAGCCTTTTT 57.285 33.333 0.00 0.00 0.00 1.94
2077 2169 1.298157 TGCAGTGAACGTAGCCATGC 61.298 55.000 0.00 0.00 0.00 4.06
2112 2210 7.114754 ACAATGTTGACCTTATCATGTGAGAT 58.885 34.615 0.00 0.00 37.11 2.75
2182 2290 3.204526 CAAAAACTGCCTTGGAAATGCA 58.795 40.909 0.00 0.00 45.18 3.96
2298 2406 5.183904 CCCAATAGTTGTTCTTGCTTTAGCT 59.816 40.000 3.10 0.00 42.66 3.32
2299 2407 6.088824 CCAATAGTTGTTCTTGCTTTAGCTG 58.911 40.000 0.00 0.00 42.66 4.24
2306 2414 6.241207 TGTTCTTGCTTTAGCTGTATCAAC 57.759 37.500 0.00 0.00 42.66 3.18
2317 2425 9.760660 CTTTAGCTGTATCAACAAATCTTGTAC 57.239 33.333 0.00 0.00 44.59 2.90
2389 2497 2.875933 CGCTGGAACTTTTGACCAACTA 59.124 45.455 0.00 0.00 33.14 2.24
2391 2499 3.883489 GCTGGAACTTTTGACCAACTACT 59.117 43.478 0.00 0.00 33.14 2.57
2392 2500 4.261197 GCTGGAACTTTTGACCAACTACTG 60.261 45.833 0.00 0.00 33.14 2.74
2395 2503 4.497507 GGAACTTTTGACCAACTACTGCAC 60.498 45.833 0.00 0.00 0.00 4.57
2396 2504 2.949644 ACTTTTGACCAACTACTGCACC 59.050 45.455 0.00 0.00 0.00 5.01
2397 2505 2.719531 TTTGACCAACTACTGCACCA 57.280 45.000 0.00 0.00 0.00 4.17
2398 2506 2.949177 TTGACCAACTACTGCACCAT 57.051 45.000 0.00 0.00 0.00 3.55
2399 2507 4.359434 TTTGACCAACTACTGCACCATA 57.641 40.909 0.00 0.00 0.00 2.74
2401 2509 3.872696 TGACCAACTACTGCACCATATG 58.127 45.455 0.00 0.00 0.00 1.78
2404 2512 5.046231 TGACCAACTACTGCACCATATGTTA 60.046 40.000 1.24 0.00 0.00 2.41
2446 2555 8.947055 ATATTGGTTTTAATTGGAATGACTGC 57.053 30.769 0.00 0.00 0.00 4.40
2477 2586 7.315142 AGTATGTGGTGAAATGCATACTTTTG 58.685 34.615 0.00 0.00 46.67 2.44
2539 2649 3.242706 GGGTGCATTTTGCTTGTTCAAAC 60.243 43.478 0.00 0.00 45.31 2.93
2544 2654 5.163774 TGCATTTTGCTTGTTCAAACTTTCC 60.164 36.000 0.75 0.00 45.31 3.13
2645 2755 3.795688 TCCTGTCTGGATTTTCTTGCT 57.204 42.857 0.00 0.00 40.56 3.91
2697 2808 7.681939 TGTTGAAATTGAGTACCCTGTAATC 57.318 36.000 0.00 0.00 0.00 1.75
2699 2810 6.381498 TGAAATTGAGTACCCTGTAATCCA 57.619 37.500 0.00 0.00 0.00 3.41
2737 2876 0.694771 TGCCCTGTTCAGCTGAATCT 59.305 50.000 30.65 0.00 36.33 2.40
2845 4683 6.882656 TGGTGTGAATCCAAAATTTCTTGAA 58.117 32.000 0.00 0.00 31.50 2.69
2905 4743 1.533994 AGCCTTCACAAAAGGGGCC 60.534 57.895 0.00 0.00 43.36 5.80
3070 4908 3.506067 AGCGCTTAAGTTTGGCTGTAAAT 59.494 39.130 2.64 0.00 31.74 1.40
3136 4974 9.846248 GAGTAAGTTCTCGTATTTACCAACTAA 57.154 33.333 0.00 0.00 0.00 2.24
3156 5151 7.631717 ACTAAGTATTTCCTTGCATCTTTCC 57.368 36.000 0.00 0.00 0.00 3.13
3231 5679 4.357918 AGCACTGTGAAGACAATAAGGT 57.642 40.909 12.86 0.00 0.00 3.50
3290 5755 8.208015 TGATTTAATCACAACTTGAGCACAAGC 61.208 37.037 21.84 3.61 44.17 4.01
3369 5907 0.889306 GGGACGGAGGGAATAGATCG 59.111 60.000 0.00 0.00 0.00 3.69
3373 5911 2.748532 GACGGAGGGAATAGATCGTAGG 59.251 54.545 0.00 0.00 0.00 3.18
3480 6019 8.352942 ACTTTCTTTTCCAACAGCTATAAAGTG 58.647 33.333 0.00 0.00 33.52 3.16
3637 6176 6.287107 ACAACGATGAAGAGTTTGTACAAG 57.713 37.500 8.56 0.00 0.00 3.16
3744 6283 1.210538 TCATGGAGGCTGCTGAGATT 58.789 50.000 7.74 0.00 0.00 2.40
3780 6319 0.251474 AGCCAAGAATCCAGCAAGCA 60.251 50.000 0.00 0.00 0.00 3.91
4062 6601 2.344504 TTTGCCATGCGTGTACATTG 57.655 45.000 4.96 0.00 0.00 2.82
4070 6609 4.742167 CCATGCGTGTACATTGTTCAAAAA 59.258 37.500 4.96 0.00 0.00 1.94
4099 6638 7.069331 TGGATGAGTTAGTGGTTTTTGTTTCAT 59.931 33.333 0.00 0.00 0.00 2.57
4139 6678 1.769465 TGTGTGCAAGGTAGGGTACAA 59.231 47.619 0.00 0.00 31.52 2.41
4157 6696 6.262273 GGGTACAATGTAATGTAGATTGGGTG 59.738 42.308 9.23 0.00 42.01 4.61
4158 6697 6.826741 GGTACAATGTAATGTAGATTGGGTGT 59.173 38.462 9.23 0.00 42.01 4.16
4159 6698 7.338449 GGTACAATGTAATGTAGATTGGGTGTT 59.662 37.037 9.23 0.00 42.01 3.32
4160 6699 7.775053 ACAATGTAATGTAGATTGGGTGTTT 57.225 32.000 9.23 0.00 42.01 2.83
4161 6700 8.189119 ACAATGTAATGTAGATTGGGTGTTTT 57.811 30.769 9.23 0.00 42.01 2.43
4162 6701 8.646900 ACAATGTAATGTAGATTGGGTGTTTTT 58.353 29.630 9.23 0.00 42.01 1.94
4163 6702 8.924691 CAATGTAATGTAGATTGGGTGTTTTTG 58.075 33.333 0.00 0.00 36.21 2.44
4164 6703 7.589958 TGTAATGTAGATTGGGTGTTTTTGT 57.410 32.000 0.00 0.00 0.00 2.83
4165 6704 7.429633 TGTAATGTAGATTGGGTGTTTTTGTG 58.570 34.615 0.00 0.00 0.00 3.33
4166 6705 6.478512 AATGTAGATTGGGTGTTTTTGTGT 57.521 33.333 0.00 0.00 0.00 3.72
4167 6706 5.255710 TGTAGATTGGGTGTTTTTGTGTG 57.744 39.130 0.00 0.00 0.00 3.82
4185 6724 1.134068 GTGAGGGGGAAATAGTCTGCC 60.134 57.143 0.00 0.00 0.00 4.85
4193 6732 2.166664 GGAAATAGTCTGCCGAGAGTGT 59.833 50.000 0.00 0.00 33.61 3.55
4211 6750 1.742831 TGTTGTAATTCTGGCATCGGC 59.257 47.619 0.00 0.00 40.13 5.54
4269 6808 3.940209 TGGCACATTTTTGTCATCCTC 57.060 42.857 0.00 0.00 0.00 3.71
4284 6823 6.533730 TGTCATCCTCCATGTACATTATTCC 58.466 40.000 5.37 0.00 33.66 3.01
4306 6845 0.606673 GACCTGGAAGAGTTGGTGGC 60.607 60.000 0.00 0.00 34.07 5.01
4309 6848 3.056328 GGAAGAGTTGGTGGCGCC 61.056 66.667 22.73 22.73 37.90 6.53
4322 6861 2.217750 GTGGCGCCTTTTCCAATTTTT 58.782 42.857 29.70 0.00 33.57 1.94
4323 6862 3.394719 GTGGCGCCTTTTCCAATTTTTA 58.605 40.909 29.70 0.00 33.57 1.52
4330 6870 7.094975 GGCGCCTTTTCCAATTTTTATTTACTT 60.095 33.333 22.15 0.00 0.00 2.24
4345 6885 7.905604 TTATTTACTTGGATGACTCTGTGTG 57.094 36.000 0.00 0.00 0.00 3.82
4359 6899 1.806542 CTGTGTGAGGTACAATGGTGC 59.193 52.381 0.00 0.00 41.89 5.01
4366 6906 5.714333 TGTGAGGTACAATGGTGCATTATTT 59.286 36.000 0.00 0.00 36.06 1.40
4368 6908 9.654749 TGTGAGGTACAATGGTGCATTATTTGC 62.655 40.741 0.00 0.00 43.55 3.68
4558 7108 7.824779 GCCAGCTACTTAGGCAAAGTATAATAT 59.175 37.037 7.12 0.00 46.85 1.28
4716 7273 6.352516 AGCAGCTACTTACAGAAAGCATTAT 58.647 36.000 0.00 0.00 38.93 1.28
4730 7287 8.693542 AGAAAGCATTATAAAATGTTGTCTGC 57.306 30.769 6.79 0.00 44.63 4.26
4731 7288 8.306038 AGAAAGCATTATAAAATGTTGTCTGCA 58.694 29.630 6.79 0.00 44.63 4.41
4732 7289 8.830201 AAAGCATTATAAAATGTTGTCTGCAA 57.170 26.923 5.10 0.00 43.75 4.08
4742 7299 1.597742 TTGTCTGCAACAGAAGAGGC 58.402 50.000 0.00 0.00 42.46 4.70
4743 7300 0.761187 TGTCTGCAACAGAAGAGGCT 59.239 50.000 0.00 0.00 42.46 4.58
4744 7301 1.970640 TGTCTGCAACAGAAGAGGCTA 59.029 47.619 0.00 0.00 42.46 3.93
4840 7415 2.698797 TCGGACCAAACTGAAGAAGACT 59.301 45.455 0.00 0.00 0.00 3.24
4846 7421 6.426646 ACCAAACTGAAGAAGACTATCTGT 57.573 37.500 0.00 0.00 0.00 3.41
4894 7469 5.062934 TCTGACGATGTATAAACGGCAAAAG 59.937 40.000 0.00 0.00 44.28 2.27
4915 7490 3.079960 TCGCGAGACTGTAAATCATCC 57.920 47.619 3.71 0.00 33.31 3.51
4930 7505 3.973206 TCATCCGCTAAGGTCTTTCAA 57.027 42.857 0.00 0.00 41.99 2.69
4934 7509 1.401905 CCGCTAAGGTCTTTCAATGGC 59.598 52.381 0.00 0.00 34.51 4.40
4966 7541 5.119279 CGTCGAAGTCATTTGAACTGAATCT 59.881 40.000 0.00 0.00 30.40 2.40
4967 7542 6.308041 CGTCGAAGTCATTTGAACTGAATCTA 59.692 38.462 0.00 0.00 30.40 1.98
4968 7543 7.449027 GTCGAAGTCATTTGAACTGAATCTAC 58.551 38.462 0.00 0.00 30.40 2.59
4970 7545 7.542477 TCGAAGTCATTTGAACTGAATCTACTC 59.458 37.037 0.00 0.00 0.00 2.59
4971 7546 7.543868 CGAAGTCATTTGAACTGAATCTACTCT 59.456 37.037 0.00 0.00 0.00 3.24
4972 7547 8.545229 AAGTCATTTGAACTGAATCTACTCTG 57.455 34.615 0.00 0.00 0.00 3.35
4974 7549 8.153550 AGTCATTTGAACTGAATCTACTCTGTT 58.846 33.333 0.00 0.00 39.39 3.16
4975 7550 8.778358 GTCATTTGAACTGAATCTACTCTGTTT 58.222 33.333 0.00 0.00 37.54 2.83
4976 7551 9.342308 TCATTTGAACTGAATCTACTCTGTTTT 57.658 29.630 0.00 0.00 37.54 2.43
4977 7552 9.390795 CATTTGAACTGAATCTACTCTGTTTTG 57.609 33.333 0.00 0.00 37.54 2.44
4978 7553 8.506168 TTTGAACTGAATCTACTCTGTTTTGT 57.494 30.769 0.00 0.00 37.54 2.83
4979 7554 7.482654 TGAACTGAATCTACTCTGTTTTGTG 57.517 36.000 0.00 0.00 37.54 3.33
4980 7555 6.483307 TGAACTGAATCTACTCTGTTTTGTGG 59.517 38.462 0.00 0.00 37.54 4.17
4981 7556 6.174720 ACTGAATCTACTCTGTTTTGTGGA 57.825 37.500 0.00 0.00 0.00 4.02
4982 7557 5.992217 ACTGAATCTACTCTGTTTTGTGGAC 59.008 40.000 0.00 0.00 0.00 4.02
4983 7558 6.174720 TGAATCTACTCTGTTTTGTGGACT 57.825 37.500 0.00 0.00 0.00 3.85
4984 7559 6.591935 TGAATCTACTCTGTTTTGTGGACTT 58.408 36.000 0.00 0.00 0.00 3.01
4985 7560 7.054124 TGAATCTACTCTGTTTTGTGGACTTT 58.946 34.615 0.00 0.00 0.00 2.66
4986 7561 7.226720 TGAATCTACTCTGTTTTGTGGACTTTC 59.773 37.037 0.00 0.00 0.00 2.62
4987 7562 6.235231 TCTACTCTGTTTTGTGGACTTTCT 57.765 37.500 0.00 0.00 0.00 2.52
4988 7563 6.650120 TCTACTCTGTTTTGTGGACTTTCTT 58.350 36.000 0.00 0.00 0.00 2.52
4989 7564 7.788026 TCTACTCTGTTTTGTGGACTTTCTTA 58.212 34.615 0.00 0.00 0.00 2.10
4990 7565 8.429641 TCTACTCTGTTTTGTGGACTTTCTTAT 58.570 33.333 0.00 0.00 0.00 1.73
4991 7566 7.497925 ACTCTGTTTTGTGGACTTTCTTATC 57.502 36.000 0.00 0.00 0.00 1.75
4992 7567 6.202954 ACTCTGTTTTGTGGACTTTCTTATCG 59.797 38.462 0.00 0.00 0.00 2.92
4993 7568 6.285224 TCTGTTTTGTGGACTTTCTTATCGA 58.715 36.000 0.00 0.00 0.00 3.59
4994 7569 6.934645 TCTGTTTTGTGGACTTTCTTATCGAT 59.065 34.615 2.16 2.16 0.00 3.59
4995 7570 7.444183 TCTGTTTTGTGGACTTTCTTATCGATT 59.556 33.333 1.71 0.00 0.00 3.34
4996 7571 7.936584 TGTTTTGTGGACTTTCTTATCGATTT 58.063 30.769 1.71 0.00 0.00 2.17
4997 7572 8.410141 TGTTTTGTGGACTTTCTTATCGATTTT 58.590 29.630 1.71 0.00 0.00 1.82
4998 7573 8.690840 GTTTTGTGGACTTTCTTATCGATTTTG 58.309 33.333 1.71 0.00 0.00 2.44
4999 7574 7.504924 TTGTGGACTTTCTTATCGATTTTGT 57.495 32.000 1.71 0.00 0.00 2.83
5000 7575 8.610248 TTGTGGACTTTCTTATCGATTTTGTA 57.390 30.769 1.71 0.00 0.00 2.41
5001 7576 8.025243 TGTGGACTTTCTTATCGATTTTGTAC 57.975 34.615 1.71 0.00 0.00 2.90
5002 7577 7.876068 TGTGGACTTTCTTATCGATTTTGTACT 59.124 33.333 1.71 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.329545 GGGGTGCCAGCTCACGAA 62.330 66.667 0.00 0.00 37.83 3.85
56 57 3.865745 GGGAGTGTCTGTTCGAATGTATG 59.134 47.826 0.00 0.00 0.00 2.39
57 58 3.769844 AGGGAGTGTCTGTTCGAATGTAT 59.230 43.478 0.00 0.00 0.00 2.29
75 76 4.147449 CATCGTGCCAGCGAGGGA 62.147 66.667 0.34 0.00 44.43 4.20
136 137 2.743928 CCTTGACAGCCACGCTCC 60.744 66.667 0.00 0.00 36.40 4.70
175 176 2.767505 CCGGTAATCTGAGGTTATGCC 58.232 52.381 0.00 0.00 37.58 4.40
339 340 2.295885 GAAGCCGGAGTGCTACTACTA 58.704 52.381 5.05 0.00 41.80 1.82
340 341 1.104630 GAAGCCGGAGTGCTACTACT 58.895 55.000 5.05 0.00 41.80 2.57
341 342 0.102663 GGAAGCCGGAGTGCTACTAC 59.897 60.000 5.05 0.00 41.80 2.73
439 441 1.342774 CGGAGGGGGAAAGGTAGTACT 60.343 57.143 0.00 0.00 0.00 2.73
440 442 1.117994 CGGAGGGGGAAAGGTAGTAC 58.882 60.000 0.00 0.00 0.00 2.73
441 443 0.688749 GCGGAGGGGGAAAGGTAGTA 60.689 60.000 0.00 0.00 0.00 1.82
445 447 2.531942 AAGCGGAGGGGGAAAGGT 60.532 61.111 0.00 0.00 0.00 3.50
462 464 2.183504 CCGAGAGCAGAGCTAGCGA 61.184 63.158 9.55 0.00 39.88 4.93
519 521 4.509737 GTGGCGACTAGGGGCGAC 62.510 72.222 6.66 6.66 35.73 5.19
654 692 1.912220 CAGGGAATCAGGGCGGTTA 59.088 57.895 0.00 0.00 0.00 2.85
656 694 4.115199 GCAGGGAATCAGGGCGGT 62.115 66.667 0.00 0.00 0.00 5.68
671 710 0.811219 CGGATTCGAGCAGATTGGCA 60.811 55.000 0.00 0.00 39.00 4.92
686 725 2.165030 ACGACTATTCCAAACGACGGAT 59.835 45.455 0.00 0.00 30.99 4.18
740 783 0.249911 GCGTGCTGGGGGAATACTAG 60.250 60.000 0.00 0.00 0.00 2.57
956 999 6.269769 ACACTGTGAATTCCACCCAAATTTAT 59.730 34.615 15.86 0.00 45.09 1.40
957 1000 5.600484 ACACTGTGAATTCCACCCAAATTTA 59.400 36.000 15.86 0.00 45.09 1.40
1035 1101 1.147824 CATCCATGGAAGGCTCGCT 59.852 57.895 20.67 0.00 0.00 4.93
1047 1113 0.620410 TGGAAGTCCCCGTCATCCAT 60.620 55.000 0.00 0.00 35.33 3.41
1071 1137 2.361104 GCTGCCCGGAACAATGGA 60.361 61.111 0.73 0.00 0.00 3.41
1074 1140 0.679960 GGTAAGCTGCCCGGAACAAT 60.680 55.000 0.73 0.00 0.00 2.71
1098 1164 0.103937 CGTCTCTGCTCCCATCCTTC 59.896 60.000 0.00 0.00 0.00 3.46
1110 1176 1.669115 CACCAAGGTGGCGTCTCTG 60.669 63.158 11.43 0.00 42.67 3.35
1118 1184 1.304282 CAGGGGATCACCAAGGTGG 59.696 63.158 18.46 2.41 45.43 4.61
1170 1236 3.369756 GCGAATCGAACACAATCTTGGTA 59.630 43.478 6.91 0.00 0.00 3.25
1172 1238 2.476185 GGCGAATCGAACACAATCTTGG 60.476 50.000 6.91 0.00 0.00 3.61
1266 1332 5.145564 TGGTATACCTTAGCAGGGTAGAAG 58.854 45.833 22.41 0.00 46.01 2.85
1285 1351 3.327757 ACATTGAGCTGGAAGAACTGGTA 59.672 43.478 0.00 0.00 34.07 3.25
1301 1367 9.770097 GATAAGATGATCCTAAGAACACATTGA 57.230 33.333 0.00 0.00 0.00 2.57
1311 1377 8.259411 CCATGGAGAAGATAAGATGATCCTAAG 58.741 40.741 5.56 0.00 0.00 2.18
1312 1378 7.736691 ACCATGGAGAAGATAAGATGATCCTAA 59.263 37.037 21.47 0.00 0.00 2.69
1313 1379 7.251936 ACCATGGAGAAGATAAGATGATCCTA 58.748 38.462 21.47 0.00 0.00 2.94
1314 1380 6.090186 ACCATGGAGAAGATAAGATGATCCT 58.910 40.000 21.47 0.00 0.00 3.24
1315 1381 6.371595 ACCATGGAGAAGATAAGATGATCC 57.628 41.667 21.47 0.00 0.00 3.36
1316 1382 9.213799 GTAAACCATGGAGAAGATAAGATGATC 57.786 37.037 21.47 0.00 0.00 2.92
1317 1383 8.943085 AGTAAACCATGGAGAAGATAAGATGAT 58.057 33.333 21.47 0.00 0.00 2.45
1318 1384 8.324191 AGTAAACCATGGAGAAGATAAGATGA 57.676 34.615 21.47 0.00 0.00 2.92
1352 1426 7.280205 AGTCAGATATATTTGGAACGAAACCAC 59.720 37.037 3.59 0.00 37.13 4.16
1395 1469 6.072199 AGCAAGGGATCAAAGTTCTCTTAT 57.928 37.500 0.00 0.00 32.12 1.73
1433 1507 6.976349 GCAAGAACAAATCATCATCTATTGCA 59.024 34.615 0.00 0.00 0.00 4.08
1462 1536 0.611714 AACAACTACAGGGCCTACCG 59.388 55.000 5.28 0.00 46.96 4.02
1515 1592 6.758886 TCAAAGCGAAACCAAATTACAAATGT 59.241 30.769 0.00 0.00 0.00 2.71
1533 1610 4.656041 CTCTTTCAAATAGCCTCAAAGCG 58.344 43.478 0.00 0.00 38.01 4.68
1558 1639 7.669722 AGAAAACTACATCATAAGAAAAGGCCA 59.330 33.333 5.01 0.00 0.00 5.36
1671 1752 3.560068 GGTGGTACCAATTTAGATGCTCG 59.440 47.826 18.31 0.00 38.42 5.03
1722 1803 4.207891 GTGGATCACACCTATCACTTGT 57.792 45.455 0.00 0.00 44.49 3.16
1894 1976 4.568359 GCATCATGAACAGAGATAACACGT 59.432 41.667 0.00 0.00 0.00 4.49
1971 2053 0.615261 ATGTGGGCATGCATGGACAA 60.615 50.000 27.34 1.72 33.37 3.18
1995 2077 9.606631 ACTTTGTTGATCTTATATCTGAAGGAC 57.393 33.333 0.00 0.00 0.00 3.85
2038 2130 5.129634 TGCACTGAGGTCAACAGATAAAAA 58.870 37.500 0.00 0.00 38.55 1.94
2039 2131 4.713553 TGCACTGAGGTCAACAGATAAAA 58.286 39.130 0.00 0.00 38.55 1.52
2040 2132 4.202357 ACTGCACTGAGGTCAACAGATAAA 60.202 41.667 0.00 0.00 38.55 1.40
2041 2133 3.324846 ACTGCACTGAGGTCAACAGATAA 59.675 43.478 0.00 0.00 38.55 1.75
2048 2140 1.806247 CGTTCACTGCACTGAGGTCAA 60.806 52.381 0.00 0.00 0.00 3.18
2138 2244 4.737054 CACATTTTGTTATGGGCTCTGAC 58.263 43.478 0.00 0.00 0.00 3.51
2212 2320 0.824109 TTCATCCGGGTAGTGCAGAG 59.176 55.000 0.00 0.00 0.00 3.35
2224 2332 6.421377 TGTTACAGATTGTTGATTCATCCG 57.579 37.500 0.00 0.00 0.00 4.18
2256 2364 1.678970 GTCAGGGCTGCCGGAAAAT 60.679 57.895 13.40 0.00 0.00 1.82
2263 2371 1.152881 CTATTGGGTCAGGGCTGCC 60.153 63.158 11.05 11.05 0.00 4.85
2298 2406 9.944663 GACAAAAGTACAAGATTTGTTGATACA 57.055 29.630 15.50 0.00 44.72 2.29
2343 2451 7.363880 CGGTAGATGGTAATTATCCAGCATACT 60.364 40.741 18.31 8.85 42.91 2.12
2422 2530 7.032580 CGCAGTCATTCCAATTAAAACCAATA 58.967 34.615 0.00 0.00 0.00 1.90
2446 2555 3.555956 GCATTTCACCACATACTCCTACG 59.444 47.826 0.00 0.00 0.00 3.51
2539 2649 7.076842 ACATGTCATAGAAATGTTCGGAAAG 57.923 36.000 0.00 0.00 37.21 2.62
2544 2654 7.964559 ACATCAAACATGTCATAGAAATGTTCG 59.035 33.333 14.11 5.55 46.13 3.95
2602 2712 7.673926 AGGAAAATTCAAGCTACCTCCATTTTA 59.326 33.333 0.00 0.00 0.00 1.52
2697 2808 4.649692 CAGGATGATTCTGGGTTCTATGG 58.350 47.826 0.00 0.00 39.69 2.74
2699 2810 3.073650 GGCAGGATGATTCTGGGTTCTAT 59.926 47.826 2.38 0.00 39.69 1.98
2737 2876 6.712998 TCTGTAAGCCAAAGTTAGCATTGTAA 59.287 34.615 1.11 0.00 0.00 2.41
2845 4683 3.306294 GCTTCAATTTTAGCCTGCCAACT 60.306 43.478 0.00 0.00 0.00 3.16
2905 4743 5.118990 CACACCATCTTCCCAATGTAGTAG 58.881 45.833 0.00 0.00 0.00 2.57
3070 4908 0.320374 GATCACGACCAGGGTGAACA 59.680 55.000 0.00 0.00 46.47 3.18
3136 4974 8.829373 AAATAGGAAAGATGCAAGGAAATACT 57.171 30.769 0.00 0.00 0.00 2.12
3210 5656 4.357918 ACCTTATTGTCTTCACAGTGCT 57.642 40.909 0.00 0.00 32.71 4.40
3211 5657 5.215160 CAAACCTTATTGTCTTCACAGTGC 58.785 41.667 0.00 0.00 32.71 4.40
3231 5679 7.841956 TGATAAAAGGGTGAAACAGAAACAAA 58.158 30.769 0.00 0.00 39.98 2.83
3290 5755 0.471617 CCCCCAGCCTGATTCAGTAG 59.528 60.000 12.54 0.00 0.00 2.57
3311 5776 2.094442 GGGAGTAGCATTCTAGATCCGC 60.094 54.545 0.00 0.00 34.74 5.54
3406 5945 7.620880 ACACAAACTATAGCTGTATCCTGAAA 58.379 34.615 0.00 0.00 0.00 2.69
3445 5984 6.795399 TGTTGGAAAAGAAAGTGATTCACTC 58.205 36.000 19.23 8.65 44.62 3.51
3459 5998 7.648142 TGAACACTTTATAGCTGTTGGAAAAG 58.352 34.615 0.00 0.00 30.80 2.27
3480 6019 1.000274 GTTGTGCTGGGGTTGATGAAC 60.000 52.381 0.00 0.00 0.00 3.18
3744 6283 1.831736 GGCTCTGCTGTAGGAAGGTTA 59.168 52.381 0.00 0.00 0.00 2.85
3780 6319 3.464828 AGTGGGGAAGTATGTCTTGGAT 58.535 45.455 0.00 0.00 36.40 3.41
4062 6601 8.739972 ACCACTAACTCATCCATATTTTTGAAC 58.260 33.333 0.00 0.00 0.00 3.18
4070 6609 8.650143 AACAAAAACCACTAACTCATCCATAT 57.350 30.769 0.00 0.00 0.00 1.78
4106 6645 4.039357 ACACAGCCGTCGGAGTCG 62.039 66.667 17.49 9.69 39.05 4.18
4107 6646 2.430921 CACACAGCCGTCGGAGTC 60.431 66.667 17.49 0.00 0.00 3.36
4139 6678 8.087750 CACAAAAACACCCAATCTACATTACAT 58.912 33.333 0.00 0.00 0.00 2.29
4157 6696 4.587262 ACTATTTCCCCCTCACACAAAAAC 59.413 41.667 0.00 0.00 0.00 2.43
4158 6697 4.810345 ACTATTTCCCCCTCACACAAAAA 58.190 39.130 0.00 0.00 0.00 1.94
4159 6698 4.105697 AGACTATTTCCCCCTCACACAAAA 59.894 41.667 0.00 0.00 0.00 2.44
4160 6699 3.655777 AGACTATTTCCCCCTCACACAAA 59.344 43.478 0.00 0.00 0.00 2.83
4161 6700 3.009033 CAGACTATTTCCCCCTCACACAA 59.991 47.826 0.00 0.00 0.00 3.33
4162 6701 2.571653 CAGACTATTTCCCCCTCACACA 59.428 50.000 0.00 0.00 0.00 3.72
4163 6702 2.681097 GCAGACTATTTCCCCCTCACAC 60.681 54.545 0.00 0.00 0.00 3.82
4164 6703 1.559682 GCAGACTATTTCCCCCTCACA 59.440 52.381 0.00 0.00 0.00 3.58
4165 6704 1.134068 GGCAGACTATTTCCCCCTCAC 60.134 57.143 0.00 0.00 0.00 3.51
4166 6705 1.213296 GGCAGACTATTTCCCCCTCA 58.787 55.000 0.00 0.00 0.00 3.86
4167 6706 0.106894 CGGCAGACTATTTCCCCCTC 59.893 60.000 0.00 0.00 0.00 4.30
4185 6724 3.325870 TGCCAGAATTACAACACTCTCG 58.674 45.455 0.00 0.00 0.00 4.04
4193 6732 1.013596 CGCCGATGCCAGAATTACAA 58.986 50.000 0.00 0.00 0.00 2.41
4211 6750 0.721483 GAACCGAAGAAAAGCGCACG 60.721 55.000 11.47 3.34 0.00 5.34
4269 6808 4.511454 CAGGTCGTGGAATAATGTACATGG 59.489 45.833 9.63 0.00 0.00 3.66
4284 6823 0.393077 ACCAACTCTTCCAGGTCGTG 59.607 55.000 0.00 0.00 0.00 4.35
4298 6837 2.022240 TTGGAAAAGGCGCCACCAAC 62.022 55.000 31.54 16.20 43.14 3.77
4306 6845 8.227119 CCAAGTAAATAAAAATTGGAAAAGGCG 58.773 33.333 0.00 0.00 42.46 5.52
4322 6861 7.239763 TCACACAGAGTCATCCAAGTAAATA 57.760 36.000 0.00 0.00 0.00 1.40
4323 6862 6.114187 TCACACAGAGTCATCCAAGTAAAT 57.886 37.500 0.00 0.00 0.00 1.40
4330 6870 2.015456 ACCTCACACAGAGTCATCCA 57.985 50.000 0.00 0.00 43.12 3.41
4335 6875 3.006967 ACCATTGTACCTCACACAGAGTC 59.993 47.826 0.00 0.00 43.12 3.36
4339 6879 1.806542 GCACCATTGTACCTCACACAG 59.193 52.381 0.00 0.00 36.69 3.66
4359 6899 5.404946 CACTCCCAAGACAAGCAAATAATG 58.595 41.667 0.00 0.00 0.00 1.90
4366 6906 1.059584 TCCCACTCCCAAGACAAGCA 61.060 55.000 0.00 0.00 0.00 3.91
4368 6908 2.656947 TTTCCCACTCCCAAGACAAG 57.343 50.000 0.00 0.00 0.00 3.16
4369 6909 4.946160 ATATTTCCCACTCCCAAGACAA 57.054 40.909 0.00 0.00 0.00 3.18
4370 6910 5.036916 ACTATATTTCCCACTCCCAAGACA 58.963 41.667 0.00 0.00 0.00 3.41
4371 6911 5.104485 ACACTATATTTCCCACTCCCAAGAC 60.104 44.000 0.00 0.00 0.00 3.01
4374 6914 4.538490 ACACACTATATTTCCCACTCCCAA 59.462 41.667 0.00 0.00 0.00 4.12
4375 6915 4.108570 ACACACTATATTTCCCACTCCCA 58.891 43.478 0.00 0.00 0.00 4.37
4729 7286 3.187432 GTCTTTGTAGCCTCTTCTGTTGC 59.813 47.826 0.00 0.00 0.00 4.17
4730 7287 3.748568 GGTCTTTGTAGCCTCTTCTGTTG 59.251 47.826 0.00 0.00 0.00 3.33
4731 7288 3.391296 TGGTCTTTGTAGCCTCTTCTGTT 59.609 43.478 0.00 0.00 0.00 3.16
4732 7289 2.972713 TGGTCTTTGTAGCCTCTTCTGT 59.027 45.455 0.00 0.00 0.00 3.41
4733 7290 3.330267 GTGGTCTTTGTAGCCTCTTCTG 58.670 50.000 0.00 0.00 0.00 3.02
4734 7291 2.303311 GGTGGTCTTTGTAGCCTCTTCT 59.697 50.000 0.00 0.00 0.00 2.85
4735 7292 2.038557 TGGTGGTCTTTGTAGCCTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
4736 7293 2.054799 TGGTGGTCTTTGTAGCCTCTT 58.945 47.619 0.00 0.00 0.00 2.85
4737 7294 1.729586 TGGTGGTCTTTGTAGCCTCT 58.270 50.000 0.00 0.00 0.00 3.69
4738 7295 2.561478 TTGGTGGTCTTTGTAGCCTC 57.439 50.000 0.00 0.00 0.00 4.70
4739 7296 2.441750 TCTTTGGTGGTCTTTGTAGCCT 59.558 45.455 0.00 0.00 0.00 4.58
4740 7297 2.858745 TCTTTGGTGGTCTTTGTAGCC 58.141 47.619 0.00 0.00 0.00 3.93
4741 7298 3.440522 GGATCTTTGGTGGTCTTTGTAGC 59.559 47.826 0.00 0.00 0.00 3.58
4742 7299 4.455877 GTGGATCTTTGGTGGTCTTTGTAG 59.544 45.833 0.00 0.00 0.00 2.74
4743 7300 4.141367 TGTGGATCTTTGGTGGTCTTTGTA 60.141 41.667 0.00 0.00 0.00 2.41
4744 7301 3.222603 GTGGATCTTTGGTGGTCTTTGT 58.777 45.455 0.00 0.00 0.00 2.83
4822 7397 6.459923 ACAGATAGTCTTCTTCAGTTTGGTC 58.540 40.000 0.00 0.00 0.00 4.02
4840 7415 9.006839 TCTTCTTCAGTTTAGTTACGACAGATA 57.993 33.333 0.00 0.00 0.00 1.98
4846 7421 6.304356 TCGTCTTCTTCAGTTTAGTTACGA 57.696 37.500 0.00 0.00 33.73 3.43
4853 7428 5.180680 TCGTCAGATCGTCTTCTTCAGTTTA 59.819 40.000 0.00 0.00 0.00 2.01
4894 7469 2.789893 GGATGATTTACAGTCTCGCGAC 59.210 50.000 3.71 0.00 40.54 5.19
4915 7490 1.062587 CGCCATTGAAAGACCTTAGCG 59.937 52.381 0.00 0.00 34.70 4.26
4943 7518 6.473397 AGATTCAGTTCAAATGACTTCGAC 57.527 37.500 0.00 0.00 0.00 4.20
4952 7527 9.125026 ACAAAACAGAGTAGATTCAGTTCAAAT 57.875 29.630 0.00 0.00 0.00 2.32
4966 7541 7.384115 CGATAAGAAAGTCCACAAAACAGAGTA 59.616 37.037 0.00 0.00 0.00 2.59
4967 7542 6.202954 CGATAAGAAAGTCCACAAAACAGAGT 59.797 38.462 0.00 0.00 0.00 3.24
4968 7543 6.423905 TCGATAAGAAAGTCCACAAAACAGAG 59.576 38.462 0.00 0.00 0.00 3.35
4970 7545 6.539649 TCGATAAGAAAGTCCACAAAACAG 57.460 37.500 0.00 0.00 0.00 3.16
4971 7546 7.504924 AATCGATAAGAAAGTCCACAAAACA 57.495 32.000 0.00 0.00 0.00 2.83
4972 7547 8.690840 CAAAATCGATAAGAAAGTCCACAAAAC 58.309 33.333 0.00 0.00 0.00 2.43
4974 7549 7.936584 ACAAAATCGATAAGAAAGTCCACAAA 58.063 30.769 0.00 0.00 0.00 2.83
4975 7550 7.504924 ACAAAATCGATAAGAAAGTCCACAA 57.495 32.000 0.00 0.00 0.00 3.33
4976 7551 7.876068 AGTACAAAATCGATAAGAAAGTCCACA 59.124 33.333 0.00 0.00 0.00 4.17
4977 7552 8.252964 AGTACAAAATCGATAAGAAAGTCCAC 57.747 34.615 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.