Multiple sequence alignment - TraesCS4D01G245300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G245300 | chr4D | 100.000 | 5782 | 0 | 0 | 1 | 5782 | 412718734 | 412712953 | 0.000000e+00 | 10678 |
1 | TraesCS4D01G245300 | chr4A | 94.819 | 3590 | 111 | 32 | 1 | 3537 | 51136937 | 51140504 | 0.000000e+00 | 5529 |
2 | TraesCS4D01G245300 | chr4A | 94.421 | 1685 | 66 | 12 | 3514 | 5178 | 51140687 | 51142363 | 0.000000e+00 | 2566 |
3 | TraesCS4D01G245300 | chr4A | 93.952 | 248 | 12 | 3 | 5533 | 5778 | 51142403 | 51142649 | 7.080000e-99 | 372 |
4 | TraesCS4D01G245300 | chr4B | 95.331 | 2163 | 72 | 17 | 1 | 2149 | 509038335 | 509036188 | 0.000000e+00 | 3408 |
5 | TraesCS4D01G245300 | chr4B | 90.324 | 1788 | 119 | 18 | 3364 | 5133 | 509034822 | 509033071 | 0.000000e+00 | 2294 |
6 | TraesCS4D01G245300 | chr4B | 92.857 | 896 | 45 | 9 | 2109 | 2999 | 509036178 | 509035297 | 0.000000e+00 | 1282 |
7 | TraesCS4D01G245300 | chr4B | 93.386 | 378 | 23 | 2 | 2992 | 3369 | 509035238 | 509034863 | 5.060000e-155 | 558 |
8 | TraesCS4D01G245300 | chr4B | 87.773 | 229 | 23 | 3 | 5554 | 5781 | 509008268 | 509008044 | 4.440000e-66 | 263 |
9 | TraesCS4D01G245300 | chr3D | 90.836 | 371 | 29 | 5 | 5177 | 5544 | 6302294 | 6302662 | 5.210000e-135 | 492 |
10 | TraesCS4D01G245300 | chr3D | 90.541 | 370 | 26 | 6 | 5180 | 5544 | 545256791 | 545256426 | 1.130000e-131 | 481 |
11 | TraesCS4D01G245300 | chr3D | 89.577 | 355 | 30 | 6 | 5186 | 5537 | 418215947 | 418216297 | 1.480000e-120 | 444 |
12 | TraesCS4D01G245300 | chr2D | 90.054 | 372 | 28 | 7 | 5177 | 5544 | 564703807 | 564704173 | 1.890000e-129 | 473 |
13 | TraesCS4D01G245300 | chr5B | 90.251 | 359 | 27 | 6 | 5180 | 5535 | 521138081 | 521137728 | 4.080000e-126 | 462 |
14 | TraesCS4D01G245300 | chr6D | 90.671 | 343 | 26 | 5 | 5180 | 5518 | 392524772 | 392525112 | 8.830000e-123 | 451 |
15 | TraesCS4D01G245300 | chr1D | 88.705 | 363 | 31 | 7 | 5178 | 5537 | 491403664 | 491404019 | 8.900000e-118 | 435 |
16 | TraesCS4D01G245300 | chr1D | 88.378 | 370 | 30 | 7 | 5185 | 5544 | 33857249 | 33857615 | 3.200000e-117 | 433 |
17 | TraesCS4D01G245300 | chr5A | 88.366 | 361 | 35 | 5 | 5180 | 5537 | 564772676 | 564772320 | 1.490000e-115 | 427 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G245300 | chr4D | 412712953 | 412718734 | 5781 | True | 10678.000000 | 10678 | 100.000000 | 1 | 5782 | 1 | chr4D.!!$R1 | 5781 |
1 | TraesCS4D01G245300 | chr4A | 51136937 | 51142649 | 5712 | False | 2822.333333 | 5529 | 94.397333 | 1 | 5778 | 3 | chr4A.!!$F1 | 5777 |
2 | TraesCS4D01G245300 | chr4B | 509033071 | 509038335 | 5264 | True | 1885.500000 | 3408 | 92.974500 | 1 | 5133 | 4 | chr4B.!!$R2 | 5132 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
729 | 737 | 0.455633 | GTGTCCGTCTAACGATGCGT | 60.456 | 55.000 | 0.24 | 0.0 | 46.05 | 5.24 | F |
891 | 916 | 0.760945 | CTCCTACCCTCCGCATCCTT | 60.761 | 60.000 | 0.00 | 0.0 | 0.00 | 3.36 | F |
2326 | 2427 | 0.754217 | CTCCTGTGCATTCATGGGGG | 60.754 | 60.000 | 0.00 | 0.0 | 0.00 | 5.40 | F |
2828 | 2941 | 1.151668 | CAGAGAAGAAACACCGCCTG | 58.848 | 55.000 | 0.00 | 0.0 | 0.00 | 4.85 | F |
3639 | 4073 | 1.334059 | GCACACCACACGAATTGACTG | 60.334 | 52.381 | 0.00 | 0.0 | 0.00 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1944 | 1978 | 0.032267 | GCTACCTATCCTGCACCGTC | 59.968 | 60.000 | 0.0 | 0.0 | 0.00 | 4.79 | R |
2337 | 2444 | 0.331278 | AAGAACCATGAATGCCCCGA | 59.669 | 50.000 | 0.0 | 0.0 | 0.00 | 5.14 | R |
3736 | 4171 | 0.988832 | CCTAGGCAACAACCCCACTA | 59.011 | 55.000 | 0.0 | 0.0 | 41.41 | 2.74 | R |
4419 | 4870 | 1.070758 | CATGTAGGGGGAGAATGGACG | 59.929 | 57.143 | 0.0 | 0.0 | 0.00 | 4.79 | R |
5205 | 5669 | 0.031721 | GTTCGTATAGGGGTGCGGAG | 59.968 | 60.000 | 0.0 | 0.0 | 0.00 | 4.63 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
77 | 78 | 4.657504 | TGATAGAGCATCAGATGGGAACTT | 59.342 | 41.667 | 12.54 | 0.00 | 38.79 | 2.66 |
129 | 130 | 1.899534 | CCCCTCGGAGATCGACCTC | 60.900 | 68.421 | 6.58 | 0.00 | 43.74 | 3.85 |
130 | 131 | 1.149627 | CCCTCGGAGATCGACCTCT | 59.850 | 63.158 | 6.78 | 0.00 | 43.74 | 3.69 |
196 | 197 | 3.256879 | ACATCGCAGTACATAGGATCCTG | 59.743 | 47.826 | 25.28 | 12.09 | 0.00 | 3.86 |
286 | 288 | 2.295349 | TCCTCACAGTACTCGACCAAAC | 59.705 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
330 | 332 | 5.125097 | TCAAACTACTCAAGTCGATCTACCC | 59.875 | 44.000 | 0.00 | 0.00 | 37.50 | 3.69 |
556 | 564 | 0.489567 | CTAGGATGGAGGGGCTAGGT | 59.510 | 60.000 | 0.00 | 0.00 | 0.00 | 3.08 |
575 | 583 | 3.791586 | GGAGGAGGTGGAGCAGGC | 61.792 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
576 | 584 | 3.791586 | GAGGAGGTGGAGCAGGCC | 61.792 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
654 | 662 | 4.089239 | TGCGAGTATGCGGGGCAA | 62.089 | 61.111 | 0.00 | 0.00 | 43.62 | 4.52 |
721 | 729 | 4.571919 | CAACTTTATGGGTGTCCGTCTAA | 58.428 | 43.478 | 0.00 | 0.00 | 35.24 | 2.10 |
729 | 737 | 0.455633 | GTGTCCGTCTAACGATGCGT | 60.456 | 55.000 | 0.24 | 0.00 | 46.05 | 5.24 |
884 | 909 | 2.444140 | CCACCCTCCTACCCTCCG | 60.444 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
891 | 916 | 0.760945 | CTCCTACCCTCCGCATCCTT | 60.761 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
913 | 938 | 1.630244 | CTTCTGTTGGCTCTTCGCGG | 61.630 | 60.000 | 6.13 | 0.00 | 40.44 | 6.46 |
1099 | 1125 | 1.046204 | AAACTCCTCGAGAAACCGGT | 58.954 | 50.000 | 15.71 | 0.00 | 33.32 | 5.28 |
1217 | 1244 | 1.078143 | GCCAGATCAGTCCGGCTTT | 60.078 | 57.895 | 0.00 | 0.00 | 41.50 | 3.51 |
1263 | 1290 | 6.612741 | AGGAGGGGACACTTACTAGTATTAG | 58.387 | 44.000 | 2.79 | 1.65 | 31.96 | 1.73 |
1374 | 1401 | 4.292186 | AGCTAGTGTGTCATGTTCCATT | 57.708 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
1429 | 1456 | 7.829211 | CCAGACCTCCATACTCTTTATTTTTCA | 59.171 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
1568 | 1595 | 2.430546 | TGCACAAATTAACAAGGGCG | 57.569 | 45.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1883 | 1917 | 8.887264 | TTAATTTGGGGTTTATCTTCTTGCTA | 57.113 | 30.769 | 0.00 | 0.00 | 0.00 | 3.49 |
1944 | 1978 | 4.202070 | GGAGAGAGAAAGTAATGAGGACGG | 60.202 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1958 | 1992 | 1.065928 | GACGGACGGTGCAGGATAG | 59.934 | 63.158 | 0.00 | 0.00 | 0.00 | 2.08 |
1960 | 1994 | 2.423898 | CGGACGGTGCAGGATAGGT | 61.424 | 63.158 | 0.00 | 0.00 | 0.00 | 3.08 |
2106 | 2148 | 6.479990 | GCCTTTTCTTTGCTATCTTTGTTTGT | 59.520 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2118 | 2218 | 4.626042 | TCTTTGTTTGTGCTCTCTCTCTC | 58.374 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
2119 | 2219 | 4.343526 | TCTTTGTTTGTGCTCTCTCTCTCT | 59.656 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
2120 | 2220 | 3.932545 | TGTTTGTGCTCTCTCTCTCTC | 57.067 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
2121 | 2221 | 3.495331 | TGTTTGTGCTCTCTCTCTCTCT | 58.505 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
2122 | 2222 | 3.505680 | TGTTTGTGCTCTCTCTCTCTCTC | 59.494 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
2123 | 2223 | 3.719268 | TTGTGCTCTCTCTCTCTCTCT | 57.281 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
2124 | 2224 | 3.266510 | TGTGCTCTCTCTCTCTCTCTC | 57.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
2125 | 2225 | 2.840038 | TGTGCTCTCTCTCTCTCTCTCT | 59.160 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2326 | 2427 | 0.754217 | CTCCTGTGCATTCATGGGGG | 60.754 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
2525 | 2636 | 2.158667 | ACATATTTCCGGCTGTTAGGGG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2828 | 2941 | 1.151668 | CAGAGAAGAAACACCGCCTG | 58.848 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2912 | 3025 | 5.300034 | TGTTCAAATGCATCATACATCCCTC | 59.700 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2921 | 3034 | 6.014584 | TGCATCATACATCCCTCGTACTATTT | 60.015 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3000 | 3178 | 5.753921 | CGGCCCTTATTTAACTGAGTCTTAG | 59.246 | 44.000 | 0.00 | 0.00 | 0.00 | 2.18 |
3117 | 3295 | 6.545666 | CCAGTGGTACAATATATTGAAGCCAA | 59.454 | 38.462 | 28.13 | 14.68 | 44.16 | 4.52 |
3132 | 3310 | 4.891168 | TGAAGCCAACATATAGGTAGTCGA | 59.109 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
3300 | 3478 | 7.827701 | TGCACAAACCATATTTTCCGTATAAA | 58.172 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3342 | 3520 | 5.131067 | TCTAACATGCTACCACGAGATACT | 58.869 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
3381 | 3605 | 9.688592 | GGCTTATTAATTAGTAAACGAGCTAGA | 57.311 | 33.333 | 0.00 | 0.00 | 31.12 | 2.43 |
3439 | 3664 | 1.345415 | CTTGCCTTGCCAGTTTGGAAT | 59.655 | 47.619 | 0.00 | 0.00 | 40.96 | 3.01 |
3448 | 3673 | 4.415596 | TGCCAGTTTGGAATCAAGGTAAT | 58.584 | 39.130 | 0.00 | 0.00 | 40.96 | 1.89 |
3571 | 4005 | 8.421002 | ACCACATTATAAATTAAATCAGTGGGC | 58.579 | 33.333 | 16.44 | 0.00 | 45.19 | 5.36 |
3572 | 4006 | 7.872483 | CCACATTATAAATTAAATCAGTGGGCC | 59.128 | 37.037 | 0.00 | 0.00 | 39.18 | 5.80 |
3581 | 4015 | 2.457813 | ATCAGTGGGCCAAATGCATA | 57.542 | 45.000 | 8.40 | 0.00 | 43.89 | 3.14 |
3639 | 4073 | 1.334059 | GCACACCACACGAATTGACTG | 60.334 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
3781 | 4216 | 7.610580 | ACCCAACAATTTTCTCAAATCCTTA | 57.389 | 32.000 | 0.00 | 0.00 | 30.80 | 2.69 |
3984 | 4425 | 6.404293 | GGCACATGTCGAACTAACCATTAATT | 60.404 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3985 | 4426 | 7.201661 | GGCACATGTCGAACTAACCATTAATTA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
3986 | 4427 | 8.178964 | GCACATGTCGAACTAACCATTAATTAA | 58.821 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4068 | 4509 | 7.121315 | GTGCCTTGAGGTCAGTTTTAATTAGAT | 59.879 | 37.037 | 0.00 | 0.00 | 37.57 | 1.98 |
4073 | 4514 | 8.380742 | TGAGGTCAGTTTTAATTAGATCTCCT | 57.619 | 34.615 | 0.00 | 0.00 | 36.00 | 3.69 |
4151 | 4596 | 2.092968 | AGTCCTTCACAACACTGCTTGA | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
4187 | 4634 | 2.300152 | TGAGATATAGCAGGGCCGAAAG | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4419 | 4870 | 5.340138 | GCTGCTAAGAACGTAAGATCGATAC | 59.660 | 44.000 | 0.00 | 0.00 | 44.80 | 2.24 |
4462 | 4914 | 3.214328 | TGTTCAGCTTTTCCTCCAGTTC | 58.786 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
4478 | 4930 | 9.231297 | TCCTCCAGTTCAATTATTTACTGAAAG | 57.769 | 33.333 | 14.73 | 11.86 | 40.24 | 2.62 |
4479 | 4931 | 8.462016 | CCTCCAGTTCAATTATTTACTGAAAGG | 58.538 | 37.037 | 14.73 | 15.14 | 40.24 | 3.11 |
4503 | 4955 | 6.258160 | GTCTAAAACAATCCCATTGATCACG | 58.742 | 40.000 | 0.00 | 0.00 | 42.83 | 4.35 |
4594 | 5046 | 2.752807 | GCCCCGGAGCCCAGAATAA | 61.753 | 63.158 | 0.73 | 0.00 | 0.00 | 1.40 |
4724 | 5176 | 2.063378 | GTAGCTGCAGGAGAGGGCT | 61.063 | 63.158 | 17.12 | 7.77 | 37.08 | 5.19 |
4797 | 5249 | 3.438087 | CGCCTAAGGAATCATAAGCATGG | 59.562 | 47.826 | 0.00 | 0.00 | 32.61 | 3.66 |
4902 | 5354 | 3.708930 | ATGCATAAGCGCACGCGTTTT | 62.709 | 47.619 | 18.29 | 12.53 | 46.56 | 2.43 |
4991 | 5443 | 1.337703 | TGTTGTTGGAGCGTACGTACT | 59.662 | 47.619 | 22.55 | 6.08 | 0.00 | 2.73 |
4995 | 5447 | 1.069022 | GTTGGAGCGTACGTACTCACA | 60.069 | 52.381 | 22.55 | 14.88 | 34.48 | 3.58 |
5062 | 5515 | 7.800380 | CGAAATTGTTCTTGGCTGTATATCATC | 59.200 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
5179 | 5643 | 8.827177 | TTTATTATGTACCTAGCCTTTGATCG | 57.173 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
5180 | 5644 | 3.753294 | ATGTACCTAGCCTTTGATCGG | 57.247 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
5181 | 5645 | 2.742348 | TGTACCTAGCCTTTGATCGGA | 58.258 | 47.619 | 0.00 | 0.00 | 0.00 | 4.55 |
5182 | 5646 | 2.429610 | TGTACCTAGCCTTTGATCGGAC | 59.570 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5183 | 5647 | 0.831307 | ACCTAGCCTTTGATCGGACC | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5184 | 5648 | 0.830648 | CCTAGCCTTTGATCGGACCA | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5185 | 5649 | 1.202580 | CCTAGCCTTTGATCGGACCAG | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
5186 | 5650 | 0.830648 | TAGCCTTTGATCGGACCAGG | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
5187 | 5651 | 0.909610 | AGCCTTTGATCGGACCAGGA | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5189 | 5653 | 1.408822 | GCCTTTGATCGGACCAGGATT | 60.409 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
5190 | 5654 | 2.945890 | GCCTTTGATCGGACCAGGATTT | 60.946 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5201 | 5665 | 2.772739 | CAGGATTTGGAGCACTCGG | 58.227 | 57.895 | 0.00 | 0.00 | 0.00 | 4.63 |
5202 | 5666 | 0.745845 | CAGGATTTGGAGCACTCGGG | 60.746 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
5204 | 5668 | 1.026718 | GGATTTGGAGCACTCGGGTG | 61.027 | 60.000 | 12.23 | 12.23 | 45.53 | 4.61 |
5220 | 5684 | 3.546009 | TGCTCCGCACCCCTATAC | 58.454 | 61.111 | 0.00 | 0.00 | 31.71 | 1.47 |
5221 | 5685 | 2.338984 | GCTCCGCACCCCTATACG | 59.661 | 66.667 | 0.00 | 0.00 | 0.00 | 3.06 |
5222 | 5686 | 2.198287 | GCTCCGCACCCCTATACGA | 61.198 | 63.158 | 0.00 | 0.00 | 0.00 | 3.43 |
5223 | 5687 | 1.741327 | GCTCCGCACCCCTATACGAA | 61.741 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5224 | 5688 | 0.031721 | CTCCGCACCCCTATACGAAC | 59.968 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
5225 | 5689 | 0.683828 | TCCGCACCCCTATACGAACA | 60.684 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5226 | 5690 | 0.176219 | CCGCACCCCTATACGAACAA | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5227 | 5691 | 1.202604 | CCGCACCCCTATACGAACAAT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
5228 | 5692 | 2.557317 | CGCACCCCTATACGAACAATT | 58.443 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
5229 | 5693 | 2.542595 | CGCACCCCTATACGAACAATTC | 59.457 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5230 | 5694 | 3.537580 | GCACCCCTATACGAACAATTCA | 58.462 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
5231 | 5695 | 4.134563 | GCACCCCTATACGAACAATTCAT | 58.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
5232 | 5696 | 4.578928 | GCACCCCTATACGAACAATTCATT | 59.421 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5233 | 5697 | 5.067283 | GCACCCCTATACGAACAATTCATTT | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
5234 | 5698 | 6.261381 | GCACCCCTATACGAACAATTCATTTA | 59.739 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5235 | 5699 | 7.201750 | GCACCCCTATACGAACAATTCATTTAA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
5236 | 5700 | 8.679100 | CACCCCTATACGAACAATTCATTTAAA | 58.321 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
5237 | 5701 | 9.245481 | ACCCCTATACGAACAATTCATTTAAAA | 57.755 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
5283 | 5747 | 6.710499 | AAAAATGGGATTTTGGGGTATCAA | 57.290 | 33.333 | 0.00 | 0.00 | 41.30 | 2.57 |
5284 | 5748 | 6.710499 | AAAATGGGATTTTGGGGTATCAAA | 57.290 | 33.333 | 0.00 | 0.00 | 40.69 | 2.69 |
5285 | 5749 | 5.692115 | AATGGGATTTTGGGGTATCAAAC | 57.308 | 39.130 | 0.00 | 0.00 | 36.49 | 2.93 |
5286 | 5750 | 3.093057 | TGGGATTTTGGGGTATCAAACG | 58.907 | 45.455 | 0.00 | 0.00 | 36.49 | 3.60 |
5287 | 5751 | 3.093814 | GGGATTTTGGGGTATCAAACGT | 58.906 | 45.455 | 0.00 | 0.00 | 36.49 | 3.99 |
5288 | 5752 | 3.119280 | GGGATTTTGGGGTATCAAACGTG | 60.119 | 47.826 | 0.00 | 0.00 | 36.49 | 4.49 |
5289 | 5753 | 3.119280 | GGATTTTGGGGTATCAAACGTGG | 60.119 | 47.826 | 0.00 | 0.00 | 36.49 | 4.94 |
5290 | 5754 | 1.912417 | TTTGGGGTATCAAACGTGGG | 58.088 | 50.000 | 0.00 | 0.00 | 32.39 | 4.61 |
5291 | 5755 | 0.772384 | TTGGGGTATCAAACGTGGGT | 59.228 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
5292 | 5756 | 0.772384 | TGGGGTATCAAACGTGGGTT | 59.228 | 50.000 | 0.00 | 0.00 | 38.22 | 4.11 |
5293 | 5757 | 1.271488 | TGGGGTATCAAACGTGGGTTC | 60.271 | 52.381 | 0.00 | 0.00 | 34.62 | 3.62 |
5294 | 5758 | 1.456296 | GGGTATCAAACGTGGGTTCC | 58.544 | 55.000 | 0.00 | 0.00 | 34.62 | 3.62 |
5295 | 5759 | 1.456296 | GGTATCAAACGTGGGTTCCC | 58.544 | 55.000 | 0.12 | 0.12 | 34.62 | 3.97 |
5296 | 5760 | 1.081094 | GTATCAAACGTGGGTTCCCG | 58.919 | 55.000 | 3.27 | 0.00 | 34.62 | 5.14 |
5297 | 5761 | 0.975135 | TATCAAACGTGGGTTCCCGA | 59.025 | 50.000 | 3.27 | 0.00 | 34.62 | 5.14 |
5298 | 5762 | 0.326927 | ATCAAACGTGGGTTCCCGAT | 59.673 | 50.000 | 3.27 | 0.00 | 34.62 | 4.18 |
5299 | 5763 | 0.320946 | TCAAACGTGGGTTCCCGATC | 60.321 | 55.000 | 3.27 | 0.00 | 34.62 | 3.69 |
5300 | 5764 | 0.321298 | CAAACGTGGGTTCCCGATCT | 60.321 | 55.000 | 3.27 | 0.00 | 34.62 | 2.75 |
5301 | 5765 | 1.066716 | CAAACGTGGGTTCCCGATCTA | 60.067 | 52.381 | 3.27 | 0.00 | 34.62 | 1.98 |
5302 | 5766 | 0.822164 | AACGTGGGTTCCCGATCTAG | 59.178 | 55.000 | 3.27 | 0.00 | 0.00 | 2.43 |
5303 | 5767 | 0.324091 | ACGTGGGTTCCCGATCTAGT | 60.324 | 55.000 | 3.27 | 0.00 | 0.00 | 2.57 |
5304 | 5768 | 0.384669 | CGTGGGTTCCCGATCTAGTC | 59.615 | 60.000 | 3.27 | 0.00 | 0.00 | 2.59 |
5305 | 5769 | 0.751452 | GTGGGTTCCCGATCTAGTCC | 59.249 | 60.000 | 3.27 | 0.00 | 0.00 | 3.85 |
5306 | 5770 | 0.398098 | TGGGTTCCCGATCTAGTCCC | 60.398 | 60.000 | 3.27 | 0.00 | 0.00 | 4.46 |
5307 | 5771 | 1.461911 | GGGTTCCCGATCTAGTCCCG | 61.462 | 65.000 | 0.00 | 0.00 | 0.00 | 5.14 |
5308 | 5772 | 1.461911 | GGTTCCCGATCTAGTCCCGG | 61.462 | 65.000 | 0.00 | 0.00 | 42.64 | 5.73 |
5309 | 5773 | 0.754587 | GTTCCCGATCTAGTCCCGGT | 60.755 | 60.000 | 0.00 | 0.00 | 41.53 | 5.28 |
5310 | 5774 | 0.754217 | TTCCCGATCTAGTCCCGGTG | 60.754 | 60.000 | 0.00 | 0.00 | 41.53 | 4.94 |
5311 | 5775 | 1.152819 | CCCGATCTAGTCCCGGTGA | 60.153 | 63.158 | 0.00 | 0.00 | 41.53 | 4.02 |
5312 | 5776 | 0.754217 | CCCGATCTAGTCCCGGTGAA | 60.754 | 60.000 | 0.00 | 0.00 | 41.53 | 3.18 |
5313 | 5777 | 1.108776 | CCGATCTAGTCCCGGTGAAA | 58.891 | 55.000 | 0.00 | 0.00 | 38.55 | 2.69 |
5314 | 5778 | 1.687123 | CCGATCTAGTCCCGGTGAAAT | 59.313 | 52.381 | 0.00 | 0.00 | 38.55 | 2.17 |
5315 | 5779 | 2.102588 | CCGATCTAGTCCCGGTGAAATT | 59.897 | 50.000 | 0.00 | 0.00 | 38.55 | 1.82 |
5316 | 5780 | 3.431766 | CCGATCTAGTCCCGGTGAAATTT | 60.432 | 47.826 | 0.00 | 0.00 | 38.55 | 1.82 |
5317 | 5781 | 3.802685 | CGATCTAGTCCCGGTGAAATTTC | 59.197 | 47.826 | 11.41 | 11.41 | 0.00 | 2.17 |
5318 | 5782 | 3.241067 | TCTAGTCCCGGTGAAATTTCG | 57.759 | 47.619 | 13.34 | 2.41 | 0.00 | 3.46 |
5319 | 5783 | 2.564062 | TCTAGTCCCGGTGAAATTTCGT | 59.436 | 45.455 | 13.34 | 0.00 | 0.00 | 3.85 |
5320 | 5784 | 1.519408 | AGTCCCGGTGAAATTTCGTG | 58.481 | 50.000 | 13.34 | 5.57 | 0.00 | 4.35 |
5321 | 5785 | 1.071071 | AGTCCCGGTGAAATTTCGTGA | 59.929 | 47.619 | 13.34 | 2.89 | 0.00 | 4.35 |
5322 | 5786 | 1.874872 | GTCCCGGTGAAATTTCGTGAA | 59.125 | 47.619 | 13.34 | 0.00 | 0.00 | 3.18 |
5323 | 5787 | 2.291190 | GTCCCGGTGAAATTTCGTGAAA | 59.709 | 45.455 | 13.34 | 0.00 | 34.46 | 2.69 |
5324 | 5788 | 2.950309 | TCCCGGTGAAATTTCGTGAAAA | 59.050 | 40.909 | 13.34 | 0.00 | 33.56 | 2.29 |
5325 | 5789 | 3.380637 | TCCCGGTGAAATTTCGTGAAAAA | 59.619 | 39.130 | 13.34 | 0.00 | 33.56 | 1.94 |
5359 | 5823 | 5.797909 | CGTATTCGTGCAAAAATGACAAA | 57.202 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
5360 | 5824 | 6.191534 | CGTATTCGTGCAAAAATGACAAAA | 57.808 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
5361 | 5825 | 6.281056 | CGTATTCGTGCAAAAATGACAAAAG | 58.719 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
5362 | 5826 | 6.075099 | CGTATTCGTGCAAAAATGACAAAAGT | 60.075 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
5363 | 5827 | 6.660887 | ATTCGTGCAAAAATGACAAAAGTT | 57.339 | 29.167 | 0.00 | 0.00 | 0.00 | 2.66 |
5364 | 5828 | 6.473397 | TTCGTGCAAAAATGACAAAAGTTT | 57.527 | 29.167 | 0.00 | 0.00 | 0.00 | 2.66 |
5365 | 5829 | 6.088719 | TCGTGCAAAAATGACAAAAGTTTC | 57.911 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
5366 | 5830 | 5.062809 | TCGTGCAAAAATGACAAAAGTTTCC | 59.937 | 36.000 | 0.00 | 0.00 | 0.00 | 3.13 |
5367 | 5831 | 5.063312 | CGTGCAAAAATGACAAAAGTTTCCT | 59.937 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5368 | 5832 | 6.254589 | CGTGCAAAAATGACAAAAGTTTCCTA | 59.745 | 34.615 | 0.00 | 0.00 | 0.00 | 2.94 |
5369 | 5833 | 7.042791 | CGTGCAAAAATGACAAAAGTTTCCTAT | 60.043 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5370 | 5834 | 8.063630 | GTGCAAAAATGACAAAAGTTTCCTATG | 58.936 | 33.333 | 0.00 | 0.00 | 0.00 | 2.23 |
5371 | 5835 | 7.768120 | TGCAAAAATGACAAAAGTTTCCTATGT | 59.232 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
5372 | 5836 | 9.255304 | GCAAAAATGACAAAAGTTTCCTATGTA | 57.745 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
5405 | 5869 | 8.856153 | AAAAACTGTTTGGGTAGATTTTTGTT | 57.144 | 26.923 | 6.53 | 0.00 | 28.49 | 2.83 |
5406 | 5870 | 8.487313 | AAAACTGTTTGGGTAGATTTTTGTTC | 57.513 | 30.769 | 6.53 | 0.00 | 0.00 | 3.18 |
5407 | 5871 | 5.827666 | ACTGTTTGGGTAGATTTTTGTTCG | 58.172 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
5408 | 5872 | 5.189659 | TGTTTGGGTAGATTTTTGTTCGG | 57.810 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
5409 | 5873 | 4.888239 | TGTTTGGGTAGATTTTTGTTCGGA | 59.112 | 37.500 | 0.00 | 0.00 | 0.00 | 4.55 |
5410 | 5874 | 5.217393 | GTTTGGGTAGATTTTTGTTCGGAC | 58.783 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
5411 | 5875 | 4.088056 | TGGGTAGATTTTTGTTCGGACA | 57.912 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
5412 | 5876 | 4.069304 | TGGGTAGATTTTTGTTCGGACAG | 58.931 | 43.478 | 0.00 | 0.00 | 37.04 | 3.51 |
5413 | 5877 | 4.070009 | GGGTAGATTTTTGTTCGGACAGT | 58.930 | 43.478 | 0.00 | 0.00 | 37.04 | 3.55 |
5414 | 5878 | 5.221682 | TGGGTAGATTTTTGTTCGGACAGTA | 60.222 | 40.000 | 0.00 | 0.00 | 37.04 | 2.74 |
5415 | 5879 | 5.878669 | GGGTAGATTTTTGTTCGGACAGTAT | 59.121 | 40.000 | 0.00 | 0.00 | 37.04 | 2.12 |
5416 | 5880 | 6.373495 | GGGTAGATTTTTGTTCGGACAGTATT | 59.627 | 38.462 | 0.00 | 0.00 | 37.04 | 1.89 |
5417 | 5881 | 7.094506 | GGGTAGATTTTTGTTCGGACAGTATTT | 60.095 | 37.037 | 0.00 | 0.00 | 37.04 | 1.40 |
5418 | 5882 | 7.961283 | GGTAGATTTTTGTTCGGACAGTATTTC | 59.039 | 37.037 | 0.00 | 0.00 | 37.04 | 2.17 |
5419 | 5883 | 6.909909 | AGATTTTTGTTCGGACAGTATTTCC | 58.090 | 36.000 | 0.00 | 0.00 | 37.04 | 3.13 |
5420 | 5884 | 6.715264 | AGATTTTTGTTCGGACAGTATTTCCT | 59.285 | 34.615 | 0.00 | 0.00 | 37.04 | 3.36 |
5421 | 5885 | 6.702716 | TTTTTGTTCGGACAGTATTTCCTT | 57.297 | 33.333 | 0.00 | 0.00 | 37.04 | 3.36 |
5422 | 5886 | 5.934935 | TTTGTTCGGACAGTATTTCCTTC | 57.065 | 39.130 | 0.00 | 0.00 | 37.04 | 3.46 |
5423 | 5887 | 3.581755 | TGTTCGGACAGTATTTCCTTCG | 58.418 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
5424 | 5888 | 2.288961 | TCGGACAGTATTTCCTTCGC | 57.711 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
5425 | 5889 | 1.134907 | TCGGACAGTATTTCCTTCGCC | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
5426 | 5890 | 1.404986 | CGGACAGTATTTCCTTCGCCA | 60.405 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
5427 | 5891 | 2.007608 | GGACAGTATTTCCTTCGCCAC | 58.992 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
5428 | 5892 | 1.659098 | GACAGTATTTCCTTCGCCACG | 59.341 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
5429 | 5893 | 1.006832 | CAGTATTTCCTTCGCCACGG | 58.993 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
5430 | 5894 | 0.899720 | AGTATTTCCTTCGCCACGGA | 59.100 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5431 | 5895 | 1.485066 | AGTATTTCCTTCGCCACGGAT | 59.515 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
5432 | 5896 | 2.696707 | AGTATTTCCTTCGCCACGGATA | 59.303 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
5433 | 5897 | 1.949465 | ATTTCCTTCGCCACGGATAC | 58.051 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5473 | 5937 | 9.672086 | TTTTTATGAAATTTCACACGGAACTAG | 57.328 | 29.630 | 22.71 | 0.00 | 40.49 | 2.57 |
5474 | 5938 | 8.610248 | TTTATGAAATTTCACACGGAACTAGA | 57.390 | 30.769 | 22.71 | 2.18 | 40.49 | 2.43 |
5475 | 5939 | 8.786826 | TTATGAAATTTCACACGGAACTAGAT | 57.213 | 30.769 | 22.71 | 5.30 | 40.49 | 1.98 |
5476 | 5940 | 7.687941 | ATGAAATTTCACACGGAACTAGATT | 57.312 | 32.000 | 22.71 | 0.00 | 40.49 | 2.40 |
5477 | 5941 | 6.898041 | TGAAATTTCACACGGAACTAGATTG | 58.102 | 36.000 | 16.91 | 0.00 | 34.56 | 2.67 |
5478 | 5942 | 5.880054 | AATTTCACACGGAACTAGATTGG | 57.120 | 39.130 | 0.00 | 0.00 | 34.56 | 3.16 |
5479 | 5943 | 3.328382 | TTCACACGGAACTAGATTGGG | 57.672 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
5480 | 5944 | 2.531771 | TCACACGGAACTAGATTGGGA | 58.468 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
5481 | 5945 | 2.901192 | TCACACGGAACTAGATTGGGAA | 59.099 | 45.455 | 0.00 | 0.00 | 0.00 | 3.97 |
5482 | 5946 | 3.517901 | TCACACGGAACTAGATTGGGAAT | 59.482 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5483 | 5947 | 3.623060 | CACACGGAACTAGATTGGGAATG | 59.377 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
5484 | 5948 | 2.614057 | CACGGAACTAGATTGGGAATGC | 59.386 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
5485 | 5949 | 2.238646 | ACGGAACTAGATTGGGAATGCA | 59.761 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
5486 | 5950 | 2.874701 | CGGAACTAGATTGGGAATGCAG | 59.125 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5487 | 5951 | 3.217626 | GGAACTAGATTGGGAATGCAGG | 58.782 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5488 | 5952 | 3.372025 | GGAACTAGATTGGGAATGCAGGT | 60.372 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
5489 | 5953 | 4.273318 | GAACTAGATTGGGAATGCAGGTT | 58.727 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
5490 | 5954 | 4.322057 | ACTAGATTGGGAATGCAGGTTT | 57.678 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
5491 | 5955 | 4.019174 | ACTAGATTGGGAATGCAGGTTTG | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
5492 | 5956 | 3.173953 | AGATTGGGAATGCAGGTTTGA | 57.826 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
5493 | 5957 | 3.716431 | AGATTGGGAATGCAGGTTTGAT | 58.284 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
5494 | 5958 | 4.870636 | AGATTGGGAATGCAGGTTTGATA | 58.129 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
5495 | 5959 | 5.461327 | AGATTGGGAATGCAGGTTTGATAT | 58.539 | 37.500 | 0.00 | 0.00 | 0.00 | 1.63 |
5496 | 5960 | 5.537674 | AGATTGGGAATGCAGGTTTGATATC | 59.462 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
5497 | 5961 | 3.565307 | TGGGAATGCAGGTTTGATATCC | 58.435 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
5498 | 5962 | 2.893489 | GGGAATGCAGGTTTGATATCCC | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5499 | 5963 | 2.893489 | GGAATGCAGGTTTGATATCCCC | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
5500 | 5964 | 3.565307 | GAATGCAGGTTTGATATCCCCA | 58.435 | 45.455 | 0.00 | 0.00 | 0.00 | 4.96 |
5501 | 5965 | 3.686227 | ATGCAGGTTTGATATCCCCAA | 57.314 | 42.857 | 0.00 | 0.00 | 0.00 | 4.12 |
5502 | 5966 | 3.464720 | TGCAGGTTTGATATCCCCAAA | 57.535 | 42.857 | 0.00 | 0.00 | 0.00 | 3.28 |
5503 | 5967 | 3.992999 | TGCAGGTTTGATATCCCCAAAT | 58.007 | 40.909 | 0.00 | 0.00 | 36.14 | 2.32 |
5504 | 5968 | 4.360889 | TGCAGGTTTGATATCCCCAAATT | 58.639 | 39.130 | 0.00 | 0.00 | 36.14 | 1.82 |
5505 | 5969 | 4.782156 | TGCAGGTTTGATATCCCCAAATTT | 59.218 | 37.500 | 0.00 | 0.00 | 36.14 | 1.82 |
5506 | 5970 | 5.250313 | TGCAGGTTTGATATCCCCAAATTTT | 59.750 | 36.000 | 0.00 | 0.00 | 36.14 | 1.82 |
5507 | 5971 | 6.441924 | TGCAGGTTTGATATCCCCAAATTTTA | 59.558 | 34.615 | 0.00 | 0.00 | 36.14 | 1.52 |
5508 | 5972 | 6.986231 | GCAGGTTTGATATCCCCAAATTTTAG | 59.014 | 38.462 | 0.00 | 0.00 | 36.14 | 1.85 |
5509 | 5973 | 7.147742 | GCAGGTTTGATATCCCCAAATTTTAGA | 60.148 | 37.037 | 0.00 | 0.00 | 36.14 | 2.10 |
5510 | 5974 | 8.927411 | CAGGTTTGATATCCCCAAATTTTAGAT | 58.073 | 33.333 | 0.00 | 0.00 | 36.14 | 1.98 |
5511 | 5975 | 9.506042 | AGGTTTGATATCCCCAAATTTTAGATT | 57.494 | 29.630 | 0.00 | 0.00 | 36.14 | 2.40 |
5618 | 6082 | 6.588756 | TGAGAAATAAGGTTACTAGTTGCACG | 59.411 | 38.462 | 0.00 | 0.00 | 0.00 | 5.34 |
5667 | 6131 | 5.171339 | AGTTGTCAAAGATAGTGCTCCAT | 57.829 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
5744 | 6210 | 6.605594 | CCTAAATACAAGGCCATTTGTTAGGA | 59.394 | 38.462 | 19.96 | 4.95 | 39.35 | 2.94 |
5753 | 6219 | 5.543790 | AGGCCATTTGTTAGGAATTTTCTGT | 59.456 | 36.000 | 5.01 | 0.00 | 0.00 | 3.41 |
5769 | 6235 | 9.696917 | GAATTTTCTGTTTTCTGTTATGGACAT | 57.303 | 29.630 | 0.00 | 0.00 | 37.69 | 3.06 |
5779 | 6245 | 9.559732 | TTTTCTGTTATGGACATACTGATATGG | 57.440 | 33.333 | 0.00 | 0.00 | 42.32 | 2.74 |
5780 | 6246 | 8.491045 | TTCTGTTATGGACATACTGATATGGA | 57.509 | 34.615 | 0.00 | 0.00 | 42.32 | 3.41 |
5781 | 6247 | 7.896811 | TCTGTTATGGACATACTGATATGGAC | 58.103 | 38.462 | 0.00 | 0.00 | 42.32 | 4.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
77 | 78 | 2.895680 | GCTGATGGCGACCTCTCA | 59.104 | 61.111 | 0.00 | 0.00 | 0.00 | 3.27 |
196 | 197 | 2.808543 | GGTGTCCTGTGAATTCACTCAC | 59.191 | 50.000 | 32.57 | 29.47 | 46.55 | 3.51 |
286 | 288 | 2.094539 | CGACATGTGCGCGTTCAG | 59.905 | 61.111 | 1.15 | 4.60 | 0.00 | 3.02 |
352 | 354 | 2.440517 | TCGGTGTAGGCCTATGTACA | 57.559 | 50.000 | 17.38 | 9.12 | 0.00 | 2.90 |
556 | 564 | 2.284921 | CTGCTCCACCTCCTCCCA | 60.285 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
590 | 598 | 2.135933 | GAAAGAGGAACTGTCACACCG | 58.864 | 52.381 | 0.00 | 0.00 | 41.55 | 4.94 |
762 | 770 | 6.273825 | GGTTTCTACTCTCGCAATAATGAGA | 58.726 | 40.000 | 0.00 | 0.00 | 38.85 | 3.27 |
884 | 909 | 1.200948 | GCCAACAGAAGACAAGGATGC | 59.799 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
891 | 916 | 1.873903 | GCGAAGAGCCAACAGAAGACA | 60.874 | 52.381 | 0.00 | 0.00 | 40.81 | 3.41 |
913 | 938 | 1.968540 | AAGAGTGAGCTTTGGCGCC | 60.969 | 57.895 | 22.73 | 22.73 | 44.37 | 6.53 |
978 | 1004 | 2.508663 | GCTAGCCAACGGACGACC | 60.509 | 66.667 | 2.29 | 0.00 | 0.00 | 4.79 |
1099 | 1125 | 5.288699 | TACTAGCCCAGTAGCCAGTAGCA | 62.289 | 52.174 | 0.00 | 0.00 | 40.72 | 3.49 |
1217 | 1244 | 2.092753 | CCAATCAGGGAGAGCTAGCAAA | 60.093 | 50.000 | 18.83 | 0.00 | 0.00 | 3.68 |
1263 | 1290 | 3.745332 | TCAATCATGTCGCATGAACAC | 57.255 | 42.857 | 20.89 | 0.00 | 0.00 | 3.32 |
1429 | 1456 | 5.376625 | TGCATGTTACAAGAAAGAAGAGGT | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
1568 | 1595 | 3.211963 | CCCTTGCATGGCGCTACC | 61.212 | 66.667 | 13.15 | 0.00 | 43.06 | 3.18 |
1910 | 1944 | 5.729510 | ACTTTCTCTCTCCTCATAACAAGC | 58.270 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
1944 | 1978 | 0.032267 | GCTACCTATCCTGCACCGTC | 59.968 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1958 | 1992 | 1.508632 | TTTTCGTCAGTGCAGCTACC | 58.491 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2106 | 2148 | 3.378512 | AGAGAGAGAGAGAGAGAGAGCA | 58.621 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2118 | 2218 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2119 | 2219 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2120 | 2220 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2121 | 2221 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2122 | 2222 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2123 | 2223 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2124 | 2224 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2125 | 2225 | 5.136068 | AGAGAGAGAGAGAGAGAGAGAGA | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
2337 | 2444 | 0.331278 | AAGAACCATGAATGCCCCGA | 59.669 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2398 | 2509 | 4.245660 | TCTTCACGAGCCATCAAAACTAG | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2457 | 2568 | 1.758936 | TGACATGTACGGATCGAGGT | 58.241 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2467 | 2578 | 9.713740 | GAATCAAGATCTCAAAATGACATGTAC | 57.286 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2828 | 2941 | 0.533755 | AGCGATTGTAGGCAGATGGC | 60.534 | 55.000 | 0.00 | 0.00 | 43.74 | 4.40 |
2921 | 3034 | 8.504812 | ACAGCATAAATTATGTCACATGTACA | 57.495 | 30.769 | 13.77 | 0.00 | 38.43 | 2.90 |
3373 | 3597 | 9.425893 | CAATATATTTTGTTTGTGTCTAGCTCG | 57.574 | 33.333 | 0.00 | 0.00 | 0.00 | 5.03 |
3401 | 3625 | 6.447162 | AGGCAAGATTGTACAAAAGTTTAGC | 58.553 | 36.000 | 13.23 | 10.14 | 0.00 | 3.09 |
3407 | 3631 | 3.989817 | GGCAAGGCAAGATTGTACAAAAG | 59.010 | 43.478 | 13.23 | 4.17 | 0.00 | 2.27 |
3568 | 4002 | 2.757868 | TGTTACTGTATGCATTTGGCCC | 59.242 | 45.455 | 3.54 | 0.00 | 43.89 | 5.80 |
3571 | 4005 | 7.887996 | AAAATGTGTTACTGTATGCATTTGG | 57.112 | 32.000 | 3.54 | 0.00 | 36.87 | 3.28 |
3572 | 4006 | 9.624697 | AGTAAAATGTGTTACTGTATGCATTTG | 57.375 | 29.630 | 3.54 | 0.00 | 41.67 | 2.32 |
3581 | 4015 | 6.838382 | AGGAGGAAGTAAAATGTGTTACTGT | 58.162 | 36.000 | 0.00 | 0.00 | 42.25 | 3.55 |
3639 | 4073 | 5.871396 | TTTATACTGGATGACTCCCTGAC | 57.129 | 43.478 | 0.00 | 0.00 | 41.29 | 3.51 |
3672 | 4106 | 9.193133 | CTTTATATCGAACTCGGTCATTAACAT | 57.807 | 33.333 | 0.00 | 0.00 | 40.29 | 2.71 |
3679 | 4113 | 6.543465 | TCCTTACTTTATATCGAACTCGGTCA | 59.457 | 38.462 | 0.00 | 0.00 | 40.29 | 4.02 |
3681 | 4115 | 6.949352 | TCCTTACTTTATATCGAACTCGGT | 57.051 | 37.500 | 0.00 | 0.00 | 40.29 | 4.69 |
3736 | 4171 | 0.988832 | CCTAGGCAACAACCCCACTA | 59.011 | 55.000 | 0.00 | 0.00 | 41.41 | 2.74 |
3833 | 4271 | 9.930693 | AAAACTTCGAATAGAGATAGTCACTTT | 57.069 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
3843 | 4281 | 6.015350 | AGACTGGTCAAAACTTCGAATAGAGA | 60.015 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
3844 | 4282 | 6.159988 | AGACTGGTCAAAACTTCGAATAGAG | 58.840 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3851 | 4289 | 4.142687 | ACACAAAGACTGGTCAAAACTTCG | 60.143 | 41.667 | 3.51 | 0.00 | 0.00 | 3.79 |
3937 | 4378 | 7.067494 | GTGCCACTTCCAACTCTATTCATTAAT | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
3984 | 4425 | 8.674173 | TCCATGCCCTATCAACCTATTTTATTA | 58.326 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3985 | 4426 | 7.534852 | TCCATGCCCTATCAACCTATTTTATT | 58.465 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3986 | 4427 | 7.102518 | TCCATGCCCTATCAACCTATTTTAT | 57.897 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3987 | 4428 | 6.523035 | TCCATGCCCTATCAACCTATTTTA | 57.477 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
4068 | 4509 | 2.381752 | TGCGGGATCAGAATAGGAGA | 57.618 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4079 | 4520 | 7.729894 | TGCTAAGTTATAGCAATTGCGGGATC | 61.730 | 42.308 | 24.02 | 15.35 | 46.29 | 3.36 |
4123 | 4568 | 4.821805 | CAGTGTTGTGAAGGACTTACCAAT | 59.178 | 41.667 | 0.00 | 0.00 | 42.04 | 3.16 |
4130 | 4575 | 2.092968 | TCAAGCAGTGTTGTGAAGGACT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
4142 | 4587 | 4.255833 | AGTTCTCTCTCTTCAAGCAGTG | 57.744 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
4151 | 4596 | 8.436778 | TGCTATATCTCACTAGTTCTCTCTCTT | 58.563 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
4187 | 4634 | 7.406553 | TGCTTATTTATGTCATGCGTTCTTAC | 58.593 | 34.615 | 0.00 | 0.00 | 0.00 | 2.34 |
4324 | 4775 | 2.802719 | GTTGTATTTCCTCCCTGGCAA | 58.197 | 47.619 | 0.00 | 0.00 | 35.26 | 4.52 |
4419 | 4870 | 1.070758 | CATGTAGGGGGAGAATGGACG | 59.929 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
4478 | 4930 | 6.564328 | GTGATCAATGGGATTGTTTTAGACC | 58.436 | 40.000 | 0.00 | 0.00 | 41.02 | 3.85 |
4479 | 4931 | 6.258160 | CGTGATCAATGGGATTGTTTTAGAC | 58.742 | 40.000 | 0.00 | 0.00 | 41.02 | 2.59 |
4503 | 4955 | 3.198068 | CTGCATATGTACATATCCGGGC | 58.802 | 50.000 | 22.81 | 21.67 | 31.98 | 6.13 |
4594 | 5046 | 1.762460 | CCTGAGGACCGGGCACTAT | 60.762 | 63.158 | 11.00 | 0.00 | 33.85 | 2.12 |
4650 | 5102 | 8.507470 | TTCAGTATCGATCATATTTCTGAACG | 57.493 | 34.615 | 0.00 | 0.00 | 41.22 | 3.95 |
4724 | 5176 | 1.272490 | CTCTCAACCACTTGCTCGGTA | 59.728 | 52.381 | 0.00 | 0.00 | 33.17 | 4.02 |
4736 | 5188 | 2.663826 | AGATGTCGAAGCTCTCAACC | 57.336 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4784 | 5236 | 7.860649 | AATTAATCCCACCATGCTTATGATT | 57.139 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4797 | 5249 | 5.924825 | CGGTAGCAGTACTAATTAATCCCAC | 59.075 | 44.000 | 0.00 | 0.00 | 30.90 | 4.61 |
4902 | 5354 | 5.972382 | GCAACGAAGTAACCAAACACAAATA | 59.028 | 36.000 | 0.00 | 0.00 | 45.00 | 1.40 |
4991 | 5443 | 6.430925 | AGCAGCTGTTCATAATTAAAGTGTGA | 59.569 | 34.615 | 16.64 | 0.00 | 0.00 | 3.58 |
4995 | 5447 | 7.112779 | AGGTAGCAGCTGTTCATAATTAAAGT | 58.887 | 34.615 | 16.64 | 0.00 | 0.00 | 2.66 |
5062 | 5515 | 3.976015 | ACCAATTACCTGTAACCCATGG | 58.024 | 45.455 | 4.14 | 4.14 | 0.00 | 3.66 |
5107 | 5571 | 6.481644 | CCGGAAGAGGTACTATATATACCGTC | 59.518 | 46.154 | 0.00 | 11.12 | 45.84 | 4.79 |
5165 | 5629 | 0.830648 | TGGTCCGATCAAAGGCTAGG | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5169 | 5633 | 0.181350 | ATCCTGGTCCGATCAAAGGC | 59.819 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5178 | 5642 | 1.026718 | GTGCTCCAAATCCTGGTCCG | 61.027 | 60.000 | 0.00 | 0.00 | 46.51 | 4.79 |
5179 | 5643 | 0.329596 | AGTGCTCCAAATCCTGGTCC | 59.670 | 55.000 | 0.00 | 0.00 | 46.51 | 4.46 |
5180 | 5644 | 1.743996 | GAGTGCTCCAAATCCTGGTC | 58.256 | 55.000 | 0.00 | 0.00 | 46.51 | 4.02 |
5181 | 5645 | 0.036010 | CGAGTGCTCCAAATCCTGGT | 60.036 | 55.000 | 0.00 | 0.00 | 46.51 | 4.00 |
5183 | 5647 | 0.745845 | CCCGAGTGCTCCAAATCCTG | 60.746 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5184 | 5648 | 1.201429 | ACCCGAGTGCTCCAAATCCT | 61.201 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5185 | 5649 | 1.026718 | CACCCGAGTGCTCCAAATCC | 61.027 | 60.000 | 0.00 | 0.00 | 37.14 | 3.01 |
5186 | 5650 | 2.471255 | CACCCGAGTGCTCCAAATC | 58.529 | 57.895 | 0.00 | 0.00 | 37.14 | 2.17 |
5187 | 5651 | 4.722193 | CACCCGAGTGCTCCAAAT | 57.278 | 55.556 | 0.00 | 0.00 | 37.14 | 2.32 |
5205 | 5669 | 0.031721 | GTTCGTATAGGGGTGCGGAG | 59.968 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5206 | 5670 | 0.683828 | TGTTCGTATAGGGGTGCGGA | 60.684 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
5207 | 5671 | 0.176219 | TTGTTCGTATAGGGGTGCGG | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
5208 | 5672 | 2.234300 | ATTGTTCGTATAGGGGTGCG | 57.766 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
5209 | 5673 | 3.537580 | TGAATTGTTCGTATAGGGGTGC | 58.462 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
5210 | 5674 | 6.693315 | AAATGAATTGTTCGTATAGGGGTG | 57.307 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
5211 | 5675 | 8.810990 | TTTAAATGAATTGTTCGTATAGGGGT | 57.189 | 30.769 | 0.00 | 0.00 | 0.00 | 4.95 |
5260 | 5724 | 6.710499 | TTGATACCCCAAAATCCCATTTTT | 57.290 | 33.333 | 0.00 | 0.00 | 40.27 | 1.94 |
5261 | 5725 | 6.480763 | GTTTGATACCCCAAAATCCCATTTT | 58.519 | 36.000 | 0.00 | 0.00 | 42.81 | 1.82 |
5262 | 5726 | 5.337975 | CGTTTGATACCCCAAAATCCCATTT | 60.338 | 40.000 | 0.00 | 0.00 | 37.72 | 2.32 |
5263 | 5727 | 4.161377 | CGTTTGATACCCCAAAATCCCATT | 59.839 | 41.667 | 0.00 | 0.00 | 37.72 | 3.16 |
5264 | 5728 | 3.704061 | CGTTTGATACCCCAAAATCCCAT | 59.296 | 43.478 | 0.00 | 0.00 | 37.72 | 4.00 |
5265 | 5729 | 3.093057 | CGTTTGATACCCCAAAATCCCA | 58.907 | 45.455 | 0.00 | 0.00 | 37.72 | 4.37 |
5266 | 5730 | 3.093814 | ACGTTTGATACCCCAAAATCCC | 58.906 | 45.455 | 0.00 | 0.00 | 37.72 | 3.85 |
5267 | 5731 | 3.119280 | CCACGTTTGATACCCCAAAATCC | 60.119 | 47.826 | 0.00 | 0.00 | 37.72 | 3.01 |
5268 | 5732 | 3.119280 | CCCACGTTTGATACCCCAAAATC | 60.119 | 47.826 | 0.00 | 0.00 | 37.72 | 2.17 |
5269 | 5733 | 2.829120 | CCCACGTTTGATACCCCAAAAT | 59.171 | 45.455 | 0.00 | 0.00 | 37.72 | 1.82 |
5270 | 5734 | 2.240279 | CCCACGTTTGATACCCCAAAA | 58.760 | 47.619 | 0.00 | 0.00 | 37.72 | 2.44 |
5271 | 5735 | 1.145325 | ACCCACGTTTGATACCCCAAA | 59.855 | 47.619 | 0.00 | 0.00 | 34.03 | 3.28 |
5272 | 5736 | 0.772384 | ACCCACGTTTGATACCCCAA | 59.228 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
5273 | 5737 | 0.772384 | AACCCACGTTTGATACCCCA | 59.228 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
5274 | 5738 | 1.456296 | GAACCCACGTTTGATACCCC | 58.544 | 55.000 | 0.00 | 0.00 | 30.30 | 4.95 |
5275 | 5739 | 1.456296 | GGAACCCACGTTTGATACCC | 58.544 | 55.000 | 0.00 | 0.00 | 30.30 | 3.69 |
5290 | 5754 | 2.039509 | CCGGGACTAGATCGGGAAC | 58.960 | 63.158 | 12.76 | 0.00 | 40.07 | 3.62 |
5291 | 5755 | 4.593033 | CCGGGACTAGATCGGGAA | 57.407 | 61.111 | 12.76 | 0.00 | 40.07 | 3.97 |
5295 | 5759 | 3.454371 | AATTTCACCGGGACTAGATCG | 57.546 | 47.619 | 6.32 | 0.00 | 0.00 | 3.69 |
5296 | 5760 | 3.802685 | CGAAATTTCACCGGGACTAGATC | 59.197 | 47.826 | 17.99 | 0.00 | 0.00 | 2.75 |
5297 | 5761 | 3.197116 | ACGAAATTTCACCGGGACTAGAT | 59.803 | 43.478 | 17.99 | 0.00 | 0.00 | 1.98 |
5298 | 5762 | 2.564062 | ACGAAATTTCACCGGGACTAGA | 59.436 | 45.455 | 17.99 | 0.00 | 0.00 | 2.43 |
5299 | 5763 | 2.671396 | CACGAAATTTCACCGGGACTAG | 59.329 | 50.000 | 17.99 | 0.54 | 0.00 | 2.57 |
5300 | 5764 | 2.299582 | TCACGAAATTTCACCGGGACTA | 59.700 | 45.455 | 17.99 | 0.00 | 30.06 | 2.59 |
5301 | 5765 | 1.071071 | TCACGAAATTTCACCGGGACT | 59.929 | 47.619 | 17.99 | 0.00 | 30.06 | 3.85 |
5302 | 5766 | 1.515081 | TCACGAAATTTCACCGGGAC | 58.485 | 50.000 | 17.99 | 0.00 | 30.06 | 4.46 |
5303 | 5767 | 2.257691 | TTCACGAAATTTCACCGGGA | 57.742 | 45.000 | 17.99 | 8.66 | 33.55 | 5.14 |
5304 | 5768 | 3.357166 | TTTTCACGAAATTTCACCGGG | 57.643 | 42.857 | 17.99 | 6.35 | 0.00 | 5.73 |
5337 | 5801 | 5.797909 | TTTGTCATTTTTGCACGAATACG | 57.202 | 34.783 | 0.00 | 0.00 | 45.75 | 3.06 |
5338 | 5802 | 7.160633 | ACTTTTGTCATTTTTGCACGAATAC | 57.839 | 32.000 | 0.00 | 0.00 | 0.00 | 1.89 |
5339 | 5803 | 7.763172 | AACTTTTGTCATTTTTGCACGAATA | 57.237 | 28.000 | 0.00 | 0.00 | 0.00 | 1.75 |
5340 | 5804 | 6.660887 | AACTTTTGTCATTTTTGCACGAAT | 57.339 | 29.167 | 0.00 | 0.00 | 0.00 | 3.34 |
5341 | 5805 | 6.401581 | GGAAACTTTTGTCATTTTTGCACGAA | 60.402 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
5342 | 5806 | 5.062809 | GGAAACTTTTGTCATTTTTGCACGA | 59.937 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5343 | 5807 | 5.063312 | AGGAAACTTTTGTCATTTTTGCACG | 59.937 | 36.000 | 0.00 | 0.00 | 37.44 | 5.34 |
5344 | 5808 | 6.421377 | AGGAAACTTTTGTCATTTTTGCAC | 57.579 | 33.333 | 0.00 | 0.00 | 37.44 | 4.57 |
5345 | 5809 | 7.768120 | ACATAGGAAACTTTTGTCATTTTTGCA | 59.232 | 29.630 | 0.00 | 0.00 | 43.67 | 4.08 |
5346 | 5810 | 8.141835 | ACATAGGAAACTTTTGTCATTTTTGC | 57.858 | 30.769 | 0.00 | 0.00 | 43.67 | 3.68 |
5380 | 5844 | 8.856153 | AACAAAAATCTACCCAAACAGTTTTT | 57.144 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
5381 | 5845 | 7.276878 | CGAACAAAAATCTACCCAAACAGTTTT | 59.723 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
5382 | 5846 | 6.754675 | CGAACAAAAATCTACCCAAACAGTTT | 59.245 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
5383 | 5847 | 6.270064 | CGAACAAAAATCTACCCAAACAGTT | 58.730 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5384 | 5848 | 5.221165 | CCGAACAAAAATCTACCCAAACAGT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
5385 | 5849 | 5.009210 | TCCGAACAAAAATCTACCCAAACAG | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5386 | 5850 | 4.888239 | TCCGAACAAAAATCTACCCAAACA | 59.112 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
5387 | 5851 | 5.217393 | GTCCGAACAAAAATCTACCCAAAC | 58.783 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
5388 | 5852 | 4.888239 | TGTCCGAACAAAAATCTACCCAAA | 59.112 | 37.500 | 0.00 | 0.00 | 30.70 | 3.28 |
5389 | 5853 | 4.462133 | TGTCCGAACAAAAATCTACCCAA | 58.538 | 39.130 | 0.00 | 0.00 | 30.70 | 4.12 |
5390 | 5854 | 4.069304 | CTGTCCGAACAAAAATCTACCCA | 58.931 | 43.478 | 0.00 | 0.00 | 34.24 | 4.51 |
5391 | 5855 | 4.070009 | ACTGTCCGAACAAAAATCTACCC | 58.930 | 43.478 | 0.00 | 0.00 | 34.24 | 3.69 |
5392 | 5856 | 6.980051 | ATACTGTCCGAACAAAAATCTACC | 57.020 | 37.500 | 0.00 | 0.00 | 34.24 | 3.18 |
5393 | 5857 | 7.961283 | GGAAATACTGTCCGAACAAAAATCTAC | 59.039 | 37.037 | 0.00 | 0.00 | 34.24 | 2.59 |
5394 | 5858 | 7.881232 | AGGAAATACTGTCCGAACAAAAATCTA | 59.119 | 33.333 | 0.00 | 0.00 | 40.36 | 1.98 |
5395 | 5859 | 6.715264 | AGGAAATACTGTCCGAACAAAAATCT | 59.285 | 34.615 | 0.00 | 0.00 | 40.36 | 2.40 |
5396 | 5860 | 6.909909 | AGGAAATACTGTCCGAACAAAAATC | 58.090 | 36.000 | 0.00 | 0.00 | 40.36 | 2.17 |
5397 | 5861 | 6.894339 | AGGAAATACTGTCCGAACAAAAAT | 57.106 | 33.333 | 0.00 | 0.00 | 40.36 | 1.82 |
5398 | 5862 | 6.512091 | CGAAGGAAATACTGTCCGAACAAAAA | 60.512 | 38.462 | 0.00 | 0.00 | 40.36 | 1.94 |
5399 | 5863 | 5.049954 | CGAAGGAAATACTGTCCGAACAAAA | 60.050 | 40.000 | 0.00 | 0.00 | 40.36 | 2.44 |
5400 | 5864 | 4.449743 | CGAAGGAAATACTGTCCGAACAAA | 59.550 | 41.667 | 0.00 | 0.00 | 40.36 | 2.83 |
5401 | 5865 | 3.991773 | CGAAGGAAATACTGTCCGAACAA | 59.008 | 43.478 | 0.00 | 0.00 | 40.36 | 2.83 |
5402 | 5866 | 3.581755 | CGAAGGAAATACTGTCCGAACA | 58.418 | 45.455 | 0.00 | 0.00 | 40.36 | 3.18 |
5403 | 5867 | 2.347755 | GCGAAGGAAATACTGTCCGAAC | 59.652 | 50.000 | 0.00 | 0.00 | 40.36 | 3.95 |
5404 | 5868 | 2.613691 | GCGAAGGAAATACTGTCCGAA | 58.386 | 47.619 | 0.00 | 0.00 | 40.36 | 4.30 |
5405 | 5869 | 1.134907 | GGCGAAGGAAATACTGTCCGA | 60.135 | 52.381 | 0.00 | 0.00 | 40.36 | 4.55 |
5406 | 5870 | 1.287425 | GGCGAAGGAAATACTGTCCG | 58.713 | 55.000 | 0.00 | 0.00 | 40.36 | 4.79 |
5407 | 5871 | 2.007608 | GTGGCGAAGGAAATACTGTCC | 58.992 | 52.381 | 0.00 | 0.00 | 35.17 | 4.02 |
5408 | 5872 | 1.659098 | CGTGGCGAAGGAAATACTGTC | 59.341 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5409 | 5873 | 1.674817 | CCGTGGCGAAGGAAATACTGT | 60.675 | 52.381 | 0.00 | 0.00 | 0.00 | 3.55 |
5410 | 5874 | 1.006832 | CCGTGGCGAAGGAAATACTG | 58.993 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5411 | 5875 | 0.899720 | TCCGTGGCGAAGGAAATACT | 59.100 | 50.000 | 0.00 | 0.00 | 32.86 | 2.12 |
5412 | 5876 | 1.949465 | ATCCGTGGCGAAGGAAATAC | 58.051 | 50.000 | 7.56 | 0.00 | 40.32 | 1.89 |
5413 | 5877 | 2.544277 | CGTATCCGTGGCGAAGGAAATA | 60.544 | 50.000 | 7.56 | 0.00 | 40.32 | 1.40 |
5414 | 5878 | 1.805120 | CGTATCCGTGGCGAAGGAAAT | 60.805 | 52.381 | 7.56 | 0.00 | 40.32 | 2.17 |
5415 | 5879 | 0.458889 | CGTATCCGTGGCGAAGGAAA | 60.459 | 55.000 | 7.56 | 0.00 | 40.32 | 3.13 |
5416 | 5880 | 1.140161 | CGTATCCGTGGCGAAGGAA | 59.860 | 57.895 | 7.56 | 0.00 | 40.32 | 3.36 |
5417 | 5881 | 2.802792 | CGTATCCGTGGCGAAGGA | 59.197 | 61.111 | 5.76 | 5.76 | 41.30 | 3.36 |
5447 | 5911 | 9.672086 | CTAGTTCCGTGTGAAATTTCATAAAAA | 57.328 | 29.630 | 23.05 | 12.37 | 39.73 | 1.94 |
5448 | 5912 | 9.058174 | TCTAGTTCCGTGTGAAATTTCATAAAA | 57.942 | 29.630 | 23.05 | 12.67 | 39.73 | 1.52 |
5449 | 5913 | 8.610248 | TCTAGTTCCGTGTGAAATTTCATAAA | 57.390 | 30.769 | 23.05 | 9.80 | 39.73 | 1.40 |
5450 | 5914 | 8.786826 | ATCTAGTTCCGTGTGAAATTTCATAA | 57.213 | 30.769 | 23.05 | 12.46 | 39.73 | 1.90 |
5451 | 5915 | 8.664798 | CAATCTAGTTCCGTGTGAAATTTCATA | 58.335 | 33.333 | 23.05 | 18.02 | 39.73 | 2.15 |
5452 | 5916 | 7.362056 | CCAATCTAGTTCCGTGTGAAATTTCAT | 60.362 | 37.037 | 23.05 | 7.89 | 39.73 | 2.57 |
5453 | 5917 | 6.072728 | CCAATCTAGTTCCGTGTGAAATTTCA | 60.073 | 38.462 | 16.91 | 16.91 | 33.94 | 2.69 |
5454 | 5918 | 6.314784 | CCAATCTAGTTCCGTGTGAAATTTC | 58.685 | 40.000 | 11.41 | 11.41 | 33.94 | 2.17 |
5455 | 5919 | 5.183140 | CCCAATCTAGTTCCGTGTGAAATTT | 59.817 | 40.000 | 0.00 | 0.00 | 33.94 | 1.82 |
5456 | 5920 | 4.700213 | CCCAATCTAGTTCCGTGTGAAATT | 59.300 | 41.667 | 0.00 | 0.00 | 33.94 | 1.82 |
5457 | 5921 | 4.019681 | TCCCAATCTAGTTCCGTGTGAAAT | 60.020 | 41.667 | 0.00 | 0.00 | 33.94 | 2.17 |
5458 | 5922 | 3.325425 | TCCCAATCTAGTTCCGTGTGAAA | 59.675 | 43.478 | 0.00 | 0.00 | 33.94 | 2.69 |
5459 | 5923 | 2.901192 | TCCCAATCTAGTTCCGTGTGAA | 59.099 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
5460 | 5924 | 2.531771 | TCCCAATCTAGTTCCGTGTGA | 58.468 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
5461 | 5925 | 3.328382 | TTCCCAATCTAGTTCCGTGTG | 57.672 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
5462 | 5926 | 3.873910 | CATTCCCAATCTAGTTCCGTGT | 58.126 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
5463 | 5927 | 2.614057 | GCATTCCCAATCTAGTTCCGTG | 59.386 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
5464 | 5928 | 2.238646 | TGCATTCCCAATCTAGTTCCGT | 59.761 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
5465 | 5929 | 2.874701 | CTGCATTCCCAATCTAGTTCCG | 59.125 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5466 | 5930 | 3.217626 | CCTGCATTCCCAATCTAGTTCC | 58.782 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
5467 | 5931 | 3.891049 | ACCTGCATTCCCAATCTAGTTC | 58.109 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
5468 | 5932 | 4.322057 | AACCTGCATTCCCAATCTAGTT | 57.678 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
5469 | 5933 | 4.019174 | CAAACCTGCATTCCCAATCTAGT | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
5470 | 5934 | 4.272489 | TCAAACCTGCATTCCCAATCTAG | 58.728 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
5471 | 5935 | 4.314522 | TCAAACCTGCATTCCCAATCTA | 57.685 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
5472 | 5936 | 3.173953 | TCAAACCTGCATTCCCAATCT | 57.826 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
5473 | 5937 | 5.279156 | GGATATCAAACCTGCATTCCCAATC | 60.279 | 44.000 | 4.83 | 0.00 | 0.00 | 2.67 |
5474 | 5938 | 4.590222 | GGATATCAAACCTGCATTCCCAAT | 59.410 | 41.667 | 4.83 | 0.00 | 0.00 | 3.16 |
5475 | 5939 | 3.960102 | GGATATCAAACCTGCATTCCCAA | 59.040 | 43.478 | 4.83 | 0.00 | 0.00 | 4.12 |
5476 | 5940 | 3.565307 | GGATATCAAACCTGCATTCCCA | 58.435 | 45.455 | 4.83 | 0.00 | 0.00 | 4.37 |
5477 | 5941 | 2.893489 | GGGATATCAAACCTGCATTCCC | 59.107 | 50.000 | 4.83 | 0.00 | 0.00 | 3.97 |
5478 | 5942 | 2.893489 | GGGGATATCAAACCTGCATTCC | 59.107 | 50.000 | 4.83 | 0.00 | 0.00 | 3.01 |
5479 | 5943 | 3.565307 | TGGGGATATCAAACCTGCATTC | 58.435 | 45.455 | 4.83 | 0.00 | 0.00 | 2.67 |
5480 | 5944 | 3.686227 | TGGGGATATCAAACCTGCATT | 57.314 | 42.857 | 4.83 | 0.00 | 0.00 | 3.56 |
5481 | 5945 | 3.686227 | TTGGGGATATCAAACCTGCAT | 57.314 | 42.857 | 4.83 | 0.00 | 0.00 | 3.96 |
5482 | 5946 | 3.464720 | TTTGGGGATATCAAACCTGCA | 57.535 | 42.857 | 4.83 | 0.00 | 0.00 | 4.41 |
5483 | 5947 | 5.357742 | AAATTTGGGGATATCAAACCTGC | 57.642 | 39.130 | 4.83 | 0.00 | 37.00 | 4.85 |
5484 | 5948 | 8.305046 | TCTAAAATTTGGGGATATCAAACCTG | 57.695 | 34.615 | 4.83 | 0.00 | 37.00 | 4.00 |
5485 | 5949 | 9.506042 | AATCTAAAATTTGGGGATATCAAACCT | 57.494 | 29.630 | 4.83 | 0.00 | 37.00 | 3.50 |
5646 | 6110 | 5.886960 | AATGGAGCACTATCTTTGACAAC | 57.113 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
5719 | 6184 | 6.605594 | TCCTAACAAATGGCCTTGTATTTAGG | 59.394 | 38.462 | 19.20 | 19.20 | 38.59 | 2.69 |
5753 | 6219 | 9.559732 | CCATATCAGTATGTCCATAACAGAAAA | 57.440 | 33.333 | 0.00 | 0.00 | 42.37 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.