Multiple sequence alignment - TraesCS4D01G244600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G244600 chr4D 100.000 3575 0 0 1 3575 409440499 409444073 0.000000e+00 6602
1 TraesCS4D01G244600 chr4B 97.005 2437 57 7 722 3153 506331315 506328890 0.000000e+00 4082
2 TraesCS4D01G244600 chr4B 88.444 675 67 9 7 674 421253024 421252354 0.000000e+00 804
3 TraesCS4D01G244600 chr4B 96.209 422 16 0 3154 3575 506328833 506328412 0.000000e+00 691
4 TraesCS4D01G244600 chr4A 96.159 2083 50 6 722 2801 64576273 64574218 0.000000e+00 3376
5 TraesCS4D01G244600 chr4A 94.186 344 14 4 2813 3151 64574009 64573667 1.470000e-143 520
6 TraesCS4D01G244600 chr4A 89.722 360 22 3 3231 3575 64573436 64573077 2.530000e-121 446
7 TraesCS4D01G244600 chr4A 89.873 79 8 0 3156 3234 64573606 64573528 6.310000e-18 102
8 TraesCS4D01G244600 chr7D 90.118 678 59 7 1 674 270086039 270085366 0.000000e+00 874
9 TraesCS4D01G244600 chr7D 89.102 679 60 11 6 674 374581980 374582654 0.000000e+00 832
10 TraesCS4D01G244600 chr7A 89.721 681 60 8 1 673 187094635 187093957 0.000000e+00 861
11 TraesCS4D01G244600 chr7B 89.574 681 59 9 1 674 271999322 271998647 0.000000e+00 854
12 TraesCS4D01G244600 chr7B 89.069 677 70 4 1 674 271981950 271981275 0.000000e+00 837
13 TraesCS4D01G244600 chr5D 89.359 686 58 9 1 674 342426535 342425853 0.000000e+00 848
14 TraesCS4D01G244600 chr6B 88.064 687 65 12 1 674 321650860 321651542 0.000000e+00 798
15 TraesCS4D01G244600 chr6D 88.035 677 68 11 7 674 190274596 190273924 0.000000e+00 789


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G244600 chr4D 409440499 409444073 3574 False 6602.0 6602 100.000 1 3575 1 chr4D.!!$F1 3574
1 TraesCS4D01G244600 chr4B 506328412 506331315 2903 True 2386.5 4082 96.607 722 3575 2 chr4B.!!$R2 2853
2 TraesCS4D01G244600 chr4B 421252354 421253024 670 True 804.0 804 88.444 7 674 1 chr4B.!!$R1 667
3 TraesCS4D01G244600 chr4A 64573077 64576273 3196 True 1111.0 3376 92.485 722 3575 4 chr4A.!!$R1 2853
4 TraesCS4D01G244600 chr7D 270085366 270086039 673 True 874.0 874 90.118 1 674 1 chr7D.!!$R1 673
5 TraesCS4D01G244600 chr7D 374581980 374582654 674 False 832.0 832 89.102 6 674 1 chr7D.!!$F1 668
6 TraesCS4D01G244600 chr7A 187093957 187094635 678 True 861.0 861 89.721 1 673 1 chr7A.!!$R1 672
7 TraesCS4D01G244600 chr7B 271998647 271999322 675 True 854.0 854 89.574 1 674 1 chr7B.!!$R2 673
8 TraesCS4D01G244600 chr7B 271981275 271981950 675 True 837.0 837 89.069 1 674 1 chr7B.!!$R1 673
9 TraesCS4D01G244600 chr5D 342425853 342426535 682 True 848.0 848 89.359 1 674 1 chr5D.!!$R1 673
10 TraesCS4D01G244600 chr6B 321650860 321651542 682 False 798.0 798 88.064 1 674 1 chr6B.!!$F1 673
11 TraesCS4D01G244600 chr6D 190273924 190274596 672 True 789.0 789 88.035 7 674 1 chr6D.!!$R1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 783 0.036022 AGCAGGCTTTCTCAGGTGTC 59.964 55.0 0.0 0.0 0.0 3.67 F
764 787 0.670854 GGCTTTCTCAGGTGTCCGAC 60.671 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 1666 0.773014 TAGGATACGACATCCGGGGA 59.227 55.000 0.0 0.0 42.87 4.81 R
2669 2699 1.669779 GATGAGAGATTGCTGGTGTGC 59.330 52.381 0.0 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 2.038659 CCTTCCCAAGTTGCTTTCCAA 58.961 47.619 0.00 0.00 0.00 3.53
65 67 8.857098 CAATCAAATCATCTTTCCACCATATCT 58.143 33.333 0.00 0.00 0.00 1.98
93 97 3.954258 TGTGAGAGAGAGTTGAGTGTTGA 59.046 43.478 0.00 0.00 0.00 3.18
112 116 6.650807 GTGTTGAGGAGACTATCATTTGAACA 59.349 38.462 0.00 0.00 44.43 3.18
174 178 2.104792 CCTTTTGGAGAGTGGTGTCTCA 59.895 50.000 3.44 0.00 44.29 3.27
217 221 2.439507 GGGAGCCTCCATCAAGATTGTA 59.560 50.000 13.90 0.00 38.64 2.41
258 262 2.203126 GGGCAAGGAGATCGCCTG 60.203 66.667 19.62 13.61 45.50 4.85
280 284 1.022735 TCGTGAAGATCTACCCGAGC 58.977 55.000 0.00 0.00 0.00 5.03
327 332 3.118038 GCCATGGTGGATAGACAAGGTTA 60.118 47.826 14.67 0.00 40.96 2.85
416 430 5.251601 TCATCAACGTGGATGTACGATAA 57.748 39.130 27.97 8.27 46.46 1.75
479 496 2.063156 GCGTTTGCACATTCCAATCA 57.937 45.000 0.00 0.00 42.15 2.57
489 506 4.751060 CACATTCCAATCACATCCCTTTG 58.249 43.478 0.00 0.00 0.00 2.77
533 551 6.554334 TTTATCTTTTCCGCTGCATATACC 57.446 37.500 0.00 0.00 0.00 2.73
540 558 1.139989 CGCTGCATATACCCTTGTCG 58.860 55.000 0.00 0.00 0.00 4.35
602 620 7.803659 GTGCTAAAACTCCATCTCAACTTAAAC 59.196 37.037 0.00 0.00 0.00 2.01
637 655 5.376756 ACCACTTTTACTTGTTGAGGGTA 57.623 39.130 0.00 0.00 0.00 3.69
642 660 9.020731 CCACTTTTACTTGTTGAGGGTATAATT 57.979 33.333 0.00 0.00 0.00 1.40
674 697 6.889595 AGATTCCTCTTCTCAATCCTTTCT 57.110 37.500 0.00 0.00 0.00 2.52
675 698 7.269522 AGATTCCTCTTCTCAATCCTTTCTT 57.730 36.000 0.00 0.00 0.00 2.52
676 699 8.386012 AGATTCCTCTTCTCAATCCTTTCTTA 57.614 34.615 0.00 0.00 0.00 2.10
677 700 9.002061 AGATTCCTCTTCTCAATCCTTTCTTAT 57.998 33.333 0.00 0.00 0.00 1.73
678 701 9.271828 GATTCCTCTTCTCAATCCTTTCTTATC 57.728 37.037 0.00 0.00 0.00 1.75
679 702 7.986553 TCCTCTTCTCAATCCTTTCTTATCT 57.013 36.000 0.00 0.00 0.00 1.98
680 703 8.386012 TCCTCTTCTCAATCCTTTCTTATCTT 57.614 34.615 0.00 0.00 0.00 2.40
681 704 9.494055 TCCTCTTCTCAATCCTTTCTTATCTTA 57.506 33.333 0.00 0.00 0.00 2.10
696 719 9.961265 TTTCTTATCTTATATATATGTCGGCCG 57.039 33.333 22.12 22.12 0.00 6.13
697 720 8.913487 TCTTATCTTATATATATGTCGGCCGA 57.087 34.615 27.28 27.28 0.00 5.54
698 721 9.346005 TCTTATCTTATATATATGTCGGCCGAA 57.654 33.333 32.93 20.51 0.00 4.30
699 722 9.395707 CTTATCTTATATATATGTCGGCCGAAC 57.604 37.037 32.93 23.61 0.00 3.95
700 723 6.140303 TCTTATATATATGTCGGCCGAACC 57.860 41.667 32.93 19.79 0.00 3.62
709 732 2.971452 GGCCGAACCGAGAAGACT 59.029 61.111 0.00 0.00 0.00 3.24
710 733 1.153804 GGCCGAACCGAGAAGACTC 60.154 63.158 0.00 0.00 39.54 3.36
711 734 1.585006 GCCGAACCGAGAAGACTCA 59.415 57.895 0.00 0.00 42.72 3.41
712 735 0.173708 GCCGAACCGAGAAGACTCAT 59.826 55.000 0.00 0.00 42.72 2.90
713 736 1.914634 CCGAACCGAGAAGACTCATG 58.085 55.000 0.00 0.00 42.72 3.07
714 737 1.272781 CGAACCGAGAAGACTCATGC 58.727 55.000 0.00 0.00 42.72 4.06
715 738 1.646189 GAACCGAGAAGACTCATGCC 58.354 55.000 0.00 0.00 42.72 4.40
716 739 0.976641 AACCGAGAAGACTCATGCCA 59.023 50.000 0.00 0.00 42.72 4.92
717 740 1.198713 ACCGAGAAGACTCATGCCAT 58.801 50.000 0.00 0.00 42.72 4.40
718 741 1.134580 ACCGAGAAGACTCATGCCATG 60.135 52.381 0.00 0.00 42.72 3.66
719 742 0.935898 CGAGAAGACTCATGCCATGC 59.064 55.000 0.00 0.00 42.72 4.06
720 743 1.741394 CGAGAAGACTCATGCCATGCA 60.741 52.381 0.00 0.00 42.72 3.96
735 758 2.567985 CATGCACATGAGTCCAGCATA 58.432 47.619 4.57 0.00 43.43 3.14
739 762 3.208594 GCACATGAGTCCAGCATATTGA 58.791 45.455 0.00 0.00 0.00 2.57
760 783 0.036022 AGCAGGCTTTCTCAGGTGTC 59.964 55.000 0.00 0.00 0.00 3.67
761 784 0.957888 GCAGGCTTTCTCAGGTGTCC 60.958 60.000 0.00 0.00 0.00 4.02
762 785 0.671781 CAGGCTTTCTCAGGTGTCCG 60.672 60.000 0.00 0.00 0.00 4.79
763 786 0.832135 AGGCTTTCTCAGGTGTCCGA 60.832 55.000 0.00 0.00 0.00 4.55
764 787 0.670854 GGCTTTCTCAGGTGTCCGAC 60.671 60.000 0.00 0.00 0.00 4.79
765 788 0.670854 GCTTTCTCAGGTGTCCGACC 60.671 60.000 0.00 0.00 46.58 4.79
778 801 1.003233 GTCCGACCTTTGGAATGGACT 59.997 52.381 14.43 0.00 38.08 3.85
1068 1098 2.440430 TCCTCCTTCCTCTCCGCG 60.440 66.667 0.00 0.00 0.00 6.46
1425 1455 3.005539 ATGACCTCCGCCAGCTGT 61.006 61.111 13.81 0.00 0.00 4.40
1500 1530 4.748798 CTGGAGGAGGCCTGGGGT 62.749 72.222 12.00 0.00 31.76 4.95
1593 1623 1.134699 TGCGAGCAGGGTAAGATTCTG 60.135 52.381 0.00 0.00 0.00 3.02
1692 1722 2.768492 GCTTTGCGGCATCAGGGAG 61.768 63.158 2.28 0.00 0.00 4.30
1812 1842 0.743097 GGTTCTTGGATGAGGCATGC 59.257 55.000 9.90 9.90 32.81 4.06
1835 1865 5.207768 CCATCAAGTAGATAAAATGCGCAC 58.792 41.667 14.90 0.00 34.43 5.34
1864 1894 0.670546 CTCGCCAACGGTTGAGACAT 60.671 55.000 21.88 0.00 40.63 3.06
2448 2478 3.871594 ACCTACTTGATGAAATACGCTGC 59.128 43.478 0.00 0.00 0.00 5.25
2544 2574 6.037610 AGCGTGAGAATATCAATGAAGTTTCC 59.962 38.462 0.00 0.00 40.43 3.13
2598 2628 9.895138 TGATAATCTCAAGATTGACTGATTGAA 57.105 29.630 14.15 3.17 43.90 2.69
2669 2699 1.273606 TGCTGGTTCTCTCTTCCTTCG 59.726 52.381 0.00 0.00 0.00 3.79
2740 2771 3.971245 TGCCATGGTTTAATTTCACCC 57.029 42.857 14.67 0.00 31.24 4.61
2796 2827 3.054065 AGGGGAGAAGTGCCTGATTTTAG 60.054 47.826 0.00 0.00 33.67 1.85
2939 3167 7.546667 ACAATACCGTGTACGAATTCATAGTTT 59.453 33.333 6.22 0.00 43.02 2.66
3197 3486 6.349280 CCTGTGATGATTAAACACGGAAATGT 60.349 38.462 0.00 0.00 41.62 2.71
3198 3487 6.976088 TGTGATGATTAAACACGGAAATGTT 58.024 32.000 0.00 0.00 44.76 2.71
3212 3501 6.915843 CACGGAAATGTTAAGTATATTTGGGC 59.084 38.462 0.00 0.00 0.00 5.36
3224 3513 0.527565 ATTTGGGCGATGCACTTGTC 59.472 50.000 0.00 0.00 30.56 3.18
3526 3925 6.694445 TGGTTATTTTGGGGTTTGAATCAT 57.306 33.333 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.876309 AGCAACTTGGGAAGGTTAGAA 57.124 42.857 0.00 0.00 0.00 2.10
20 21 1.063266 TGGAAAGCAACTTGGGAAGGT 60.063 47.619 0.00 0.00 0.00 3.50
65 67 6.491745 ACACTCAACTCTCTCTCACAGATTTA 59.508 38.462 0.00 0.00 0.00 1.40
93 97 6.114187 TGTGTGTTCAAATGATAGTCTCCT 57.886 37.500 0.00 0.00 0.00 3.69
112 116 3.181451 TGATGAACTCCTTGCTCTTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
174 178 4.442706 CAAGCGACACCTAACCAATCTAT 58.557 43.478 0.00 0.00 0.00 1.98
217 221 6.318900 CCTTACAAACTTCTTGGTTCAACTCT 59.681 38.462 0.00 0.00 0.00 3.24
258 262 1.404391 TCGGGTAGATCTTCACGAAGC 59.596 52.381 22.45 2.99 38.28 3.86
327 332 0.317479 CGAAGGGTCCACGAAGAAGT 59.683 55.000 0.00 0.00 0.00 3.01
416 430 1.275291 CGTGGTTCTGATAGGTGGTGT 59.725 52.381 0.00 0.00 0.00 4.16
470 487 3.716431 AGCAAAGGGATGTGATTGGAAT 58.284 40.909 0.00 0.00 0.00 3.01
471 488 3.173953 AGCAAAGGGATGTGATTGGAA 57.826 42.857 0.00 0.00 0.00 3.53
479 496 2.318908 TGCAAGAAAGCAAAGGGATGT 58.681 42.857 0.00 0.00 42.46 3.06
514 532 2.438021 AGGGTATATGCAGCGGAAAAGA 59.562 45.455 0.00 0.00 0.00 2.52
515 533 2.851195 AGGGTATATGCAGCGGAAAAG 58.149 47.619 0.00 0.00 0.00 2.27
533 551 0.662619 TTCAAGCAAGCACGACAAGG 59.337 50.000 0.00 0.00 0.00 3.61
540 558 5.221880 TCACAATACATTTCAAGCAAGCAC 58.778 37.500 0.00 0.00 0.00 4.40
613 631 5.757988 ACCCTCAACAAGTAAAAGTGGTAA 58.242 37.500 0.00 0.00 0.00 2.85
615 633 4.245251 ACCCTCAACAAGTAAAAGTGGT 57.755 40.909 0.00 0.00 0.00 4.16
637 655 8.469280 AGAAGAGGAATCTAGAGGGGTAATTAT 58.531 37.037 0.00 0.00 0.00 1.28
642 660 4.732443 TGAGAAGAGGAATCTAGAGGGGTA 59.268 45.833 0.00 0.00 0.00 3.69
654 676 8.386012 AGATAAGAAAGGATTGAGAAGAGGAA 57.614 34.615 0.00 0.00 0.00 3.36
655 677 7.986553 AGATAAGAAAGGATTGAGAAGAGGA 57.013 36.000 0.00 0.00 0.00 3.71
674 697 8.355169 GGTTCGGCCGACATATATATAAGATAA 58.645 37.037 31.19 3.22 0.00 1.75
675 698 7.879070 GGTTCGGCCGACATATATATAAGATA 58.121 38.462 31.19 3.69 0.00 1.98
676 699 6.746120 GGTTCGGCCGACATATATATAAGAT 58.254 40.000 31.19 0.00 0.00 2.40
677 700 6.140303 GGTTCGGCCGACATATATATAAGA 57.860 41.667 31.19 5.04 0.00 2.10
692 715 1.153804 GAGTCTTCTCGGTTCGGCC 60.154 63.158 0.00 0.00 0.00 6.13
693 716 0.173708 ATGAGTCTTCTCGGTTCGGC 59.826 55.000 0.00 0.00 43.09 5.54
694 717 1.914634 CATGAGTCTTCTCGGTTCGG 58.085 55.000 0.00 0.00 43.09 4.30
695 718 1.272781 GCATGAGTCTTCTCGGTTCG 58.727 55.000 0.00 0.00 43.09 3.95
696 719 1.066858 TGGCATGAGTCTTCTCGGTTC 60.067 52.381 0.00 0.00 43.09 3.62
697 720 0.976641 TGGCATGAGTCTTCTCGGTT 59.023 50.000 0.00 0.00 43.09 4.44
698 721 1.134580 CATGGCATGAGTCTTCTCGGT 60.135 52.381 22.91 0.00 43.09 4.69
699 722 1.579698 CATGGCATGAGTCTTCTCGG 58.420 55.000 22.91 0.00 43.09 4.63
700 723 0.935898 GCATGGCATGAGTCTTCTCG 59.064 55.000 30.69 0.44 43.09 4.04
701 724 1.669779 GTGCATGGCATGAGTCTTCTC 59.330 52.381 30.69 10.76 41.91 2.87
702 725 1.003928 TGTGCATGGCATGAGTCTTCT 59.996 47.619 30.69 0.00 41.91 2.85
703 726 1.456296 TGTGCATGGCATGAGTCTTC 58.544 50.000 30.69 12.21 41.91 2.87
704 727 1.749063 CATGTGCATGGCATGAGTCTT 59.251 47.619 30.69 13.81 44.60 3.01
705 728 1.064979 TCATGTGCATGGCATGAGTCT 60.065 47.619 30.69 9.24 45.18 3.24
706 729 1.385528 TCATGTGCATGGCATGAGTC 58.614 50.000 30.69 18.27 45.18 3.36
707 730 3.581163 TCATGTGCATGGCATGAGT 57.419 47.368 30.69 9.79 45.18 3.41
710 733 0.384309 GGACTCATGTGCATGGCATG 59.616 55.000 22.99 22.99 41.91 4.06
711 734 0.033894 TGGACTCATGTGCATGGCAT 60.034 50.000 11.68 0.00 41.91 4.40
712 735 0.678684 CTGGACTCATGTGCATGGCA 60.679 55.000 11.68 0.00 43.39 4.92
713 736 2.001361 GCTGGACTCATGTGCATGGC 62.001 60.000 11.68 3.33 43.39 4.40
714 737 0.678684 TGCTGGACTCATGTGCATGG 60.679 55.000 11.68 5.89 43.39 3.66
715 738 1.389555 ATGCTGGACTCATGTGCATG 58.610 50.000 5.86 5.86 43.39 4.06
716 739 3.503800 ATATGCTGGACTCATGTGCAT 57.496 42.857 0.00 0.00 43.39 3.96
717 740 2.946990 CAATATGCTGGACTCATGTGCA 59.053 45.455 0.00 0.00 42.20 4.57
718 741 3.208594 TCAATATGCTGGACTCATGTGC 58.791 45.455 0.00 0.00 34.96 4.57
719 742 4.700700 TCTCAATATGCTGGACTCATGTG 58.299 43.478 0.00 0.00 0.00 3.21
720 743 4.743045 GCTCTCAATATGCTGGACTCATGT 60.743 45.833 0.00 0.00 0.00 3.21
735 758 2.355920 CCTGAGAAAGCCTGCTCTCAAT 60.356 50.000 10.96 0.00 45.61 2.57
739 762 0.324285 CACCTGAGAAAGCCTGCTCT 59.676 55.000 0.00 0.00 32.44 4.09
760 783 1.453155 CAGTCCATTCCAAAGGTCGG 58.547 55.000 0.00 0.00 0.00 4.79
761 784 1.453155 CCAGTCCATTCCAAAGGTCG 58.547 55.000 0.00 0.00 0.00 4.79
762 785 1.839424 CCCAGTCCATTCCAAAGGTC 58.161 55.000 0.00 0.00 0.00 3.85
763 786 0.251787 GCCCAGTCCATTCCAAAGGT 60.252 55.000 0.00 0.00 0.00 3.50
764 787 0.972471 GGCCCAGTCCATTCCAAAGG 60.972 60.000 0.00 0.00 0.00 3.11
765 788 0.040204 AGGCCCAGTCCATTCCAAAG 59.960 55.000 0.00 0.00 0.00 2.77
766 789 0.039618 GAGGCCCAGTCCATTCCAAA 59.960 55.000 0.00 0.00 0.00 3.28
778 801 3.563479 GGGAAATACTTCAAAGAGGCCCA 60.563 47.826 0.00 0.00 32.75 5.36
1068 1098 4.882396 GCGGAGAAGGAGGCGAGC 62.882 72.222 0.00 0.00 0.00 5.03
1296 1326 1.318886 CGAGCAGAGAGGAGAAGGCA 61.319 60.000 0.00 0.00 0.00 4.75
1338 1368 1.597854 CAGTGCGGTGAAGGCAGAA 60.598 57.895 0.00 0.00 41.83 3.02
1425 1455 4.015406 ACGGCGGCATCAGGTGAA 62.015 61.111 13.24 0.00 0.00 3.18
1593 1623 3.802948 TCGAATAACCTCTCTGCTTCC 57.197 47.619 0.00 0.00 0.00 3.46
1636 1666 0.773014 TAGGATACGACATCCGGGGA 59.227 55.000 0.00 0.00 42.87 4.81
1692 1722 8.871125 TCTAATATCCTCTCCACCTTATGAAAC 58.129 37.037 0.00 0.00 0.00 2.78
1812 1842 5.207768 GTGCGCATTTTATCTACTTGATGG 58.792 41.667 15.91 0.00 36.65 3.51
1864 1894 7.970061 GCACAAGCAATCAAATAGAATACTCAA 59.030 33.333 0.00 0.00 41.58 3.02
2448 2478 5.695816 GCAAGTATCTAGCTCAAATCCTCTG 59.304 44.000 0.00 0.00 0.00 3.35
2544 2574 7.604657 AATTCCTAGACTGGTCAGTATAAGG 57.395 40.000 14.65 14.65 42.66 2.69
2598 2628 6.865834 AACTCAGACTCTCATTTCAGGTAT 57.134 37.500 0.00 0.00 0.00 2.73
2669 2699 1.669779 GATGAGAGATTGCTGGTGTGC 59.330 52.381 0.00 0.00 0.00 4.57
2740 2771 5.006746 GCTGGGATTAACATCACGTAAAGAG 59.993 44.000 0.00 0.00 35.24 2.85
2796 2827 1.078143 CAACTAGCTGGGGTGCTCC 60.078 63.158 0.85 0.00 42.97 4.70
2918 3146 7.259882 TGATAAACTATGAATTCGTACACGGT 58.740 34.615 3.14 0.00 40.29 4.83
2939 3167 8.503196 GTCACAATAACAGACAACACAATGATA 58.497 33.333 0.00 0.00 32.68 2.15
3197 3486 5.373222 AGTGCATCGCCCAAATATACTTAA 58.627 37.500 0.00 0.00 0.00 1.85
3198 3487 4.968259 AGTGCATCGCCCAAATATACTTA 58.032 39.130 0.00 0.00 0.00 2.24
3208 3497 1.672030 CAGACAAGTGCATCGCCCA 60.672 57.895 0.00 0.00 0.00 5.36
3224 3513 7.383102 ACCAGCTTAATTTCATACTTGACAG 57.617 36.000 0.00 0.00 0.00 3.51
3526 3925 5.476091 ACAACCTTTTTGTTTCCACTTCA 57.524 34.783 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.