Multiple sequence alignment - TraesCS4D01G244200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G244200 chr4D 100.000 7843 0 0 1 7843 408803610 408811452 0.000000e+00 14484.0
1 TraesCS4D01G244200 chr4D 87.721 1751 130 14 1767 3433 403409879 403411628 0.000000e+00 1964.0
2 TraesCS4D01G244200 chr4D 95.000 480 18 3 3689 4167 417677572 417678046 0.000000e+00 749.0
3 TraesCS4D01G244200 chr4D 89.643 280 29 0 223 502 313032381 313032102 2.690000e-94 357.0
4 TraesCS4D01G244200 chr4D 87.838 296 36 0 223 518 301140990 301141285 1.620000e-91 348.0
5 TraesCS4D01G244200 chr4D 88.276 290 33 1 223 512 494486365 494486653 5.830000e-91 346.0
6 TraesCS4D01G244200 chr4A 94.946 2790 82 22 4572 7304 80175625 80178412 0.000000e+00 4316.0
7 TraesCS4D01G244200 chr4A 91.114 754 37 17 495 1229 80173653 80174395 0.000000e+00 994.0
8 TraesCS4D01G244200 chr4A 93.783 563 17 8 1221 1766 80174578 80175139 0.000000e+00 830.0
9 TraesCS4D01G244200 chr4A 94.836 426 16 4 4166 4587 80175134 80175557 0.000000e+00 660.0
10 TraesCS4D01G244200 chr4A 87.444 223 20 4 1 223 80173421 80173635 4.700000e-62 250.0
11 TraesCS4D01G244200 chr4B 93.432 2086 100 11 4622 6687 507238348 507236280 0.000000e+00 3059.0
12 TraesCS4D01G244200 chr4B 86.861 1370 110 32 1767 3083 389110786 389112138 0.000000e+00 1469.0
13 TraesCS4D01G244200 chr4B 94.167 840 32 13 944 1766 507239769 507238930 0.000000e+00 1264.0
14 TraesCS4D01G244200 chr4B 96.735 582 17 2 7262 7843 507235368 507234789 0.000000e+00 968.0
15 TraesCS4D01G244200 chr4B 93.186 587 33 6 6689 7272 507236145 507235563 0.000000e+00 856.0
16 TraesCS4D01G244200 chr4B 92.275 466 22 7 4166 4624 507238935 507238477 0.000000e+00 649.0
17 TraesCS4D01G244200 chr4B 88.743 382 32 5 223 603 507242054 507241683 2.580000e-124 457.0
18 TraesCS4D01G244200 chr4B 90.357 280 26 1 223 501 187736927 187737206 4.470000e-97 366.0
19 TraesCS4D01G244200 chr4B 89.003 291 24 4 599 883 507240071 507239783 3.480000e-93 353.0
20 TraesCS4D01G244200 chr4B 90.265 226 15 5 1 223 507242316 507242095 9.960000e-74 289.0
21 TraesCS4D01G244200 chr3D 87.198 2523 175 66 1765 4166 532113269 532110774 0.000000e+00 2734.0
22 TraesCS4D01G244200 chr3D 89.688 1251 99 10 1756 2983 657787 659030 0.000000e+00 1568.0
23 TraesCS4D01G244200 chr3D 81.125 2045 258 64 2048 4000 246591479 246589471 0.000000e+00 1520.0
24 TraesCS4D01G244200 chr3D 88.059 1298 105 13 1764 3029 605262866 605261587 0.000000e+00 1493.0
25 TraesCS4D01G244200 chr3D 91.236 639 25 13 3552 4164 135226815 135226182 0.000000e+00 841.0
26 TraesCS4D01G244200 chr3D 90.647 278 26 0 223 500 255424401 255424678 3.460000e-98 370.0
27 TraesCS4D01G244200 chr3D 90.071 282 28 0 223 504 295549579 295549298 4.470000e-97 366.0
28 TraesCS4D01G244200 chr3D 96.386 83 3 0 3469 3551 246590036 246589954 3.820000e-28 137.0
29 TraesCS4D01G244200 chr3A 89.820 1837 119 25 1770 3551 17733138 17731315 0.000000e+00 2294.0
30 TraesCS4D01G244200 chr3A 85.657 1736 173 33 1767 3433 331478998 331477270 0.000000e+00 1757.0
31 TraesCS4D01G244200 chr3A 89.905 525 28 7 3547 4049 17731291 17730770 0.000000e+00 652.0
32 TraesCS4D01G244200 chr3A 81.213 511 48 20 2977 3441 38024232 38023724 1.240000e-97 368.0
33 TraesCS4D01G244200 chr3A 79.006 181 13 15 3350 3507 588513052 588512874 5.010000e-17 100.0
34 TraesCS4D01G244200 chr2D 90.979 1696 89 22 1767 3419 166141915 166140241 0.000000e+00 2226.0
35 TraesCS4D01G244200 chr2D 91.028 1226 86 4 1766 2983 318548886 318550095 0.000000e+00 1633.0
36 TraesCS4D01G244200 chr2D 89.482 1293 104 6 1767 3029 547691543 547690253 0.000000e+00 1605.0
37 TraesCS4D01G244200 chr2D 88.925 1246 91 11 1767 2983 587238555 587239782 0.000000e+00 1493.0
38 TraesCS4D01G244200 chr2D 85.601 1257 105 20 2251 3433 156553489 156554743 0.000000e+00 1249.0
39 TraesCS4D01G244200 chr2D 91.589 642 28 10 3547 4166 166139764 166139127 0.000000e+00 863.0
40 TraesCS4D01G244200 chr2D 89.953 637 38 7 3552 4166 579952177 579952809 0.000000e+00 798.0
41 TraesCS4D01G244200 chr2D 89.286 644 37 5 3555 4170 21105713 21105074 0.000000e+00 778.0
42 TraesCS4D01G244200 chr2D 90.230 522 36 6 3655 4166 318551212 318551728 0.000000e+00 667.0
43 TraesCS4D01G244200 chr2D 91.007 278 25 0 223 500 325807328 325807605 7.430000e-100 375.0
44 TraesCS4D01G244200 chr2D 93.333 120 8 0 3432 3551 166139907 166139788 2.250000e-40 178.0
45 TraesCS4D01G244200 chr2D 87.013 77 10 0 6719 6795 534960876 534960952 3.900000e-13 87.9
46 TraesCS4D01G244200 chr1B 82.626 2521 251 92 1766 4166 387302008 387299555 0.000000e+00 2056.0
47 TraesCS4D01G244200 chr1B 85.887 1736 154 36 1767 3433 671545188 671546901 0.000000e+00 1764.0
48 TraesCS4D01G244200 chr1B 88.961 308 32 2 220 525 617090726 617090419 5.740000e-101 379.0
49 TraesCS4D01G244200 chr1B 89.474 285 28 1 219 501 173139038 173139322 7.480000e-95 359.0
50 TraesCS4D01G244200 chr1B 84.112 107 15 2 3420 3525 31466874 31466979 1.390000e-17 102.0
51 TraesCS4D01G244200 chr7D 87.134 1741 149 24 1767 3433 610701808 610700069 0.000000e+00 1905.0
52 TraesCS4D01G244200 chr7D 86.775 1414 135 24 2115 3485 459421885 459423289 0.000000e+00 1528.0
53 TraesCS4D01G244200 chr7D 83.908 1566 186 31 1764 3299 459931450 459932979 0.000000e+00 1435.0
54 TraesCS4D01G244200 chr1A 86.324 1733 160 28 1767 3423 82187088 82188819 0.000000e+00 1816.0
55 TraesCS4D01G244200 chr1A 89.493 276 29 0 226 501 478208985 478208710 4.500000e-92 350.0
56 TraesCS4D01G244200 chr1A 89.247 279 30 0 223 501 478212070 478211792 4.500000e-92 350.0
57 TraesCS4D01G244200 chr1A 89.007 282 30 1 220 501 478204367 478204087 1.620000e-91 348.0
58 TraesCS4D01G244200 chr5D 86.490 1732 138 29 1767 3421 255951718 255950006 0.000000e+00 1814.0
59 TraesCS4D01G244200 chr5D 89.828 639 38 8 3552 4167 375395258 375394624 0.000000e+00 795.0
60 TraesCS4D01G244200 chr5D 88.715 638 40 8 3552 4167 433200616 433201243 0.000000e+00 750.0
61 TraesCS4D01G244200 chr5D 91.367 278 24 0 223 500 451067420 451067143 1.600000e-101 381.0
62 TraesCS4D01G244200 chr5D 90.942 276 25 0 223 498 7559984 7559709 9.610000e-99 372.0
63 TraesCS4D01G244200 chr2A 88.566 1513 86 27 2117 3551 736023190 736024693 0.000000e+00 1755.0
64 TraesCS4D01G244200 chr2A 83.324 1835 206 42 1776 3551 690313269 690311476 0.000000e+00 1602.0
65 TraesCS4D01G244200 chr2A 83.534 1081 115 16 2398 3422 732266403 732267476 0.000000e+00 952.0
66 TraesCS4D01G244200 chr2A 90.681 279 25 1 223 500 561299032 561298754 3.460000e-98 370.0
67 TraesCS4D01G244200 chr2A 87.013 77 10 0 6719 6795 678195792 678195868 3.900000e-13 87.9
68 TraesCS4D01G244200 chr1D 89.746 1297 97 13 1766 3029 92955816 92954523 0.000000e+00 1626.0
69 TraesCS4D01G244200 chr1D 84.214 1742 157 52 1881 3551 228812142 228810448 0.000000e+00 1585.0
70 TraesCS4D01G244200 chr1D 85.431 1565 153 30 2048 3551 61786629 61788179 0.000000e+00 1557.0
71 TraesCS4D01G244200 chr1D 85.061 1466 131 39 2048 3432 321681936 321680478 0.000000e+00 1413.0
72 TraesCS4D01G244200 chr1D 90.743 821 43 11 1766 2555 400236043 400236861 0.000000e+00 1064.0
73 TraesCS4D01G244200 chr1D 87.281 629 51 17 3552 4166 400237502 400238115 0.000000e+00 691.0
74 TraesCS4D01G244200 chr1D 88.489 278 32 0 223 500 125746491 125746768 3.510000e-88 337.0
75 TraesCS4D01G244200 chr6B 84.957 1509 132 38 2123 3545 657112664 657114163 0.000000e+00 1441.0
76 TraesCS4D01G244200 chr6B 89.078 293 30 1 223 515 192342512 192342222 5.780000e-96 363.0
77 TraesCS4D01G244200 chr7B 80.874 1877 224 65 1762 3551 285438367 285436539 0.000000e+00 1352.0
78 TraesCS4D01G244200 chr7B 82.196 674 58 28 3111 3722 23611793 23611120 2.510000e-144 523.0
79 TraesCS4D01G244200 chr5B 87.113 1195 89 14 2409 3550 386333129 386334311 0.000000e+00 1293.0
80 TraesCS4D01G244200 chr5A 86.713 1001 100 14 2057 3026 267841649 267842647 0.000000e+00 1081.0
81 TraesCS4D01G244200 chr7A 89.374 527 42 9 3648 4166 574125731 574126251 0.000000e+00 651.0
82 TraesCS4D01G244200 chr7A 80.226 177 18 13 3345 3507 20278998 20278825 4.970000e-22 117.0
83 TraesCS4D01G244200 chr3B 82.683 589 45 16 2884 3423 53957802 53958382 3.310000e-128 470.0
84 TraesCS4D01G244200 chr3B 90.681 279 26 0 223 501 39465139 39464861 9.610000e-99 372.0
85 TraesCS4D01G244200 chr6A 88.591 298 27 5 223 515 374422672 374422967 9.680000e-94 355.0
86 TraesCS4D01G244200 chr6A 81.941 443 53 10 3551 3970 318778060 318778498 4.500000e-92 350.0
87 TraesCS4D01G244200 chr6A 89.123 285 26 5 223 503 614004525 614004808 4.500000e-92 350.0
88 TraesCS4D01G244200 chr6D 89.286 280 30 0 223 502 18535538 18535817 1.250000e-92 351.0
89 TraesCS4D01G244200 chr6D 88.581 289 31 2 228 515 434164167 434164454 4.500000e-92 350.0
90 TraesCS4D01G244200 chr6D 89.209 278 28 2 223 500 26033658 26033933 5.830000e-91 346.0
91 TraesCS4D01G244200 chr6D 87.372 293 34 2 223 515 105813676 105813387 4.540000e-87 333.0
92 TraesCS4D01G244200 chr6D 87.372 293 34 2 223 515 105814578 105814289 4.540000e-87 333.0
93 TraesCS4D01G244200 chr6D 86.275 306 36 5 223 527 429805878 429806178 2.110000e-85 327.0
94 TraesCS4D01G244200 chr6D 87.900 281 29 3 223 500 303470249 303469971 7.590000e-85 326.0
95 TraesCS4D01G244200 chr6D 86.780 295 35 3 223 517 351933202 351932912 7.590000e-85 326.0
96 TraesCS4D01G244200 chrUn 89.209 278 30 0 223 500 214071247 214070970 1.620000e-91 348.0
97 TraesCS4D01G244200 chrUn 87.770 278 34 0 223 500 231014303 231014026 7.590000e-85 326.0
98 TraesCS4D01G244200 chrUn 87.410 278 35 0 223 500 204477955 204477678 3.530000e-83 320.0
99 TraesCS4D01G244200 chrUn 86.380 279 37 1 223 501 280024509 280024232 3.560000e-78 303.0
100 TraesCS4D01G244200 chrUn 86.380 279 37 1 223 501 366721280 366721003 3.560000e-78 303.0
101 TraesCS4D01G244200 chrUn 86.022 279 38 1 223 501 223412717 223412440 1.650000e-76 298.0
102 TraesCS4D01G244200 chr2B 79.032 186 13 16 3345 3507 570091837 570091655 3.870000e-18 104.0
103 TraesCS4D01G244200 chr2B 83.117 77 13 0 6719 6795 636214872 636214948 3.930000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G244200 chr4D 408803610 408811452 7842 False 14484.000 14484 100.00000 1 7843 1 chr4D.!!$F3 7842
1 TraesCS4D01G244200 chr4D 403409879 403411628 1749 False 1964.000 1964 87.72100 1767 3433 1 chr4D.!!$F2 1666
2 TraesCS4D01G244200 chr4A 80173421 80178412 4991 False 1410.000 4316 92.42460 1 7304 5 chr4A.!!$F1 7303
3 TraesCS4D01G244200 chr4B 389110786 389112138 1352 False 1469.000 1469 86.86100 1767 3083 1 chr4B.!!$F2 1316
4 TraesCS4D01G244200 chr4B 507234789 507242316 7527 True 986.875 3059 92.22575 1 7843 8 chr4B.!!$R1 7842
5 TraesCS4D01G244200 chr3D 532110774 532113269 2495 True 2734.000 2734 87.19800 1765 4166 1 chr3D.!!$R3 2401
6 TraesCS4D01G244200 chr3D 657787 659030 1243 False 1568.000 1568 89.68800 1756 2983 1 chr3D.!!$F1 1227
7 TraesCS4D01G244200 chr3D 605261587 605262866 1279 True 1493.000 1493 88.05900 1764 3029 1 chr3D.!!$R4 1265
8 TraesCS4D01G244200 chr3D 135226182 135226815 633 True 841.000 841 91.23600 3552 4164 1 chr3D.!!$R1 612
9 TraesCS4D01G244200 chr3D 246589471 246591479 2008 True 828.500 1520 88.75550 2048 4000 2 chr3D.!!$R5 1952
10 TraesCS4D01G244200 chr3A 331477270 331478998 1728 True 1757.000 1757 85.65700 1767 3433 1 chr3A.!!$R2 1666
11 TraesCS4D01G244200 chr3A 17730770 17733138 2368 True 1473.000 2294 89.86250 1770 4049 2 chr3A.!!$R4 2279
12 TraesCS4D01G244200 chr3A 38023724 38024232 508 True 368.000 368 81.21300 2977 3441 1 chr3A.!!$R1 464
13 TraesCS4D01G244200 chr2D 547690253 547691543 1290 True 1605.000 1605 89.48200 1767 3029 1 chr2D.!!$R2 1262
14 TraesCS4D01G244200 chr2D 587238555 587239782 1227 False 1493.000 1493 88.92500 1767 2983 1 chr2D.!!$F5 1216
15 TraesCS4D01G244200 chr2D 156553489 156554743 1254 False 1249.000 1249 85.60100 2251 3433 1 chr2D.!!$F1 1182
16 TraesCS4D01G244200 chr2D 318548886 318551728 2842 False 1150.000 1633 90.62900 1766 4166 2 chr2D.!!$F6 2400
17 TraesCS4D01G244200 chr2D 166139127 166141915 2788 True 1089.000 2226 91.96700 1767 4166 3 chr2D.!!$R3 2399
18 TraesCS4D01G244200 chr2D 579952177 579952809 632 False 798.000 798 89.95300 3552 4166 1 chr2D.!!$F4 614
19 TraesCS4D01G244200 chr2D 21105074 21105713 639 True 778.000 778 89.28600 3555 4170 1 chr2D.!!$R1 615
20 TraesCS4D01G244200 chr1B 387299555 387302008 2453 True 2056.000 2056 82.62600 1766 4166 1 chr1B.!!$R1 2400
21 TraesCS4D01G244200 chr1B 671545188 671546901 1713 False 1764.000 1764 85.88700 1767 3433 1 chr1B.!!$F3 1666
22 TraesCS4D01G244200 chr7D 610700069 610701808 1739 True 1905.000 1905 87.13400 1767 3433 1 chr7D.!!$R1 1666
23 TraesCS4D01G244200 chr7D 459421885 459423289 1404 False 1528.000 1528 86.77500 2115 3485 1 chr7D.!!$F1 1370
24 TraesCS4D01G244200 chr7D 459931450 459932979 1529 False 1435.000 1435 83.90800 1764 3299 1 chr7D.!!$F2 1535
25 TraesCS4D01G244200 chr1A 82187088 82188819 1731 False 1816.000 1816 86.32400 1767 3423 1 chr1A.!!$F1 1656
26 TraesCS4D01G244200 chr1A 478208710 478212070 3360 True 350.000 350 89.37000 223 501 2 chr1A.!!$R2 278
27 TraesCS4D01G244200 chr5D 255950006 255951718 1712 True 1814.000 1814 86.49000 1767 3421 1 chr5D.!!$R2 1654
28 TraesCS4D01G244200 chr5D 375394624 375395258 634 True 795.000 795 89.82800 3552 4167 1 chr5D.!!$R3 615
29 TraesCS4D01G244200 chr5D 433200616 433201243 627 False 750.000 750 88.71500 3552 4167 1 chr5D.!!$F1 615
30 TraesCS4D01G244200 chr2A 736023190 736024693 1503 False 1755.000 1755 88.56600 2117 3551 1 chr2A.!!$F3 1434
31 TraesCS4D01G244200 chr2A 690311476 690313269 1793 True 1602.000 1602 83.32400 1776 3551 1 chr2A.!!$R2 1775
32 TraesCS4D01G244200 chr2A 732266403 732267476 1073 False 952.000 952 83.53400 2398 3422 1 chr2A.!!$F2 1024
33 TraesCS4D01G244200 chr1D 92954523 92955816 1293 True 1626.000 1626 89.74600 1766 3029 1 chr1D.!!$R1 1263
34 TraesCS4D01G244200 chr1D 228810448 228812142 1694 True 1585.000 1585 84.21400 1881 3551 1 chr1D.!!$R2 1670
35 TraesCS4D01G244200 chr1D 61786629 61788179 1550 False 1557.000 1557 85.43100 2048 3551 1 chr1D.!!$F1 1503
36 TraesCS4D01G244200 chr1D 321680478 321681936 1458 True 1413.000 1413 85.06100 2048 3432 1 chr1D.!!$R3 1384
37 TraesCS4D01G244200 chr1D 400236043 400238115 2072 False 877.500 1064 89.01200 1766 4166 2 chr1D.!!$F3 2400
38 TraesCS4D01G244200 chr6B 657112664 657114163 1499 False 1441.000 1441 84.95700 2123 3545 1 chr6B.!!$F1 1422
39 TraesCS4D01G244200 chr7B 285436539 285438367 1828 True 1352.000 1352 80.87400 1762 3551 1 chr7B.!!$R2 1789
40 TraesCS4D01G244200 chr7B 23611120 23611793 673 True 523.000 523 82.19600 3111 3722 1 chr7B.!!$R1 611
41 TraesCS4D01G244200 chr5B 386333129 386334311 1182 False 1293.000 1293 87.11300 2409 3550 1 chr5B.!!$F1 1141
42 TraesCS4D01G244200 chr5A 267841649 267842647 998 False 1081.000 1081 86.71300 2057 3026 1 chr5A.!!$F1 969
43 TraesCS4D01G244200 chr7A 574125731 574126251 520 False 651.000 651 89.37400 3648 4166 1 chr7A.!!$F1 518
44 TraesCS4D01G244200 chr3B 53957802 53958382 580 False 470.000 470 82.68300 2884 3423 1 chr3B.!!$F1 539
45 TraesCS4D01G244200 chr6D 105813387 105814578 1191 True 333.000 333 87.37200 223 515 2 chr6D.!!$R3 292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 2615 0.811616 AAGCGATCGAGGTCATTGCC 60.812 55.000 21.57 0.00 31.68 4.52 F
2544 4930 0.033228 CATGGCCGTCTGGAGATCTC 59.967 60.000 14.75 14.75 37.49 2.75 F
3104 5490 1.071814 GCCAGTGTGGAAACCCGTA 59.928 57.895 0.00 0.00 40.96 4.02 F
3595 6372 1.375523 GTTGAGGACGCCGGTCATT 60.376 57.895 1.90 0.00 45.28 2.57 F
4534 12332 1.415672 AAGCAGAACCGGGAAGTCCA 61.416 55.000 6.32 0.00 37.91 4.02 F
5281 13502 1.064685 GCCAGCTTGGGTGTTATAGGT 60.065 52.381 4.65 0.00 38.19 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2837 5223 0.612229 CCTGGCTCGCCTCATATCAT 59.388 55.000 9.65 0.00 36.94 2.45 R
4116 11907 0.466189 CAGTGAGTTGTGGCCCAAGT 60.466 55.000 12.50 12.50 39.46 3.16 R
4118 11909 1.152777 CCAGTGAGTTGTGGCCCAA 60.153 57.895 0.00 0.55 0.00 4.12 R
4753 12959 2.930040 TCTGCGAGCTAAGGAAAAATCG 59.070 45.455 0.00 0.00 0.00 3.34 R
5630 13858 0.961019 TCTCCATGCAAAACAGGCAC 59.039 50.000 0.00 0.00 45.23 5.01 R
7094 15537 1.411089 CGACGGCGAAGAAGTTTCG 59.589 57.895 16.62 5.80 44.06 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 320 2.928396 CCCACCACCCCTTCGTCT 60.928 66.667 0.00 0.00 0.00 4.18
288 331 4.081309 CACCCCTTCGTCTAACCTTTCATA 60.081 45.833 0.00 0.00 0.00 2.15
343 386 4.911610 CGTTCTGAACCAATTGCACTTTAG 59.088 41.667 14.48 0.00 0.00 1.85
401 444 5.808042 ATTCACGGTCAGAATTTGATGAG 57.192 39.130 0.00 0.00 38.29 2.90
452 495 7.561021 TTGACAAGTAAATCACAAGCTAACA 57.439 32.000 0.00 0.00 0.00 2.41
455 498 7.228507 TGACAAGTAAATCACAAGCTAACATGT 59.771 33.333 0.00 0.00 0.00 3.21
486 529 2.106477 TATCCTGTTGCAACGCATGA 57.894 45.000 23.79 16.68 38.76 3.07
502 545 4.935205 ACGCATGAGCATTGTTCTAGTAAA 59.065 37.500 0.00 0.00 42.27 2.01
637 2297 2.285756 CCGCTTTTGTGTTCTACGAACA 59.714 45.455 5.40 5.40 32.37 3.18
645 2305 5.459110 TGTGTTCTACGAACAAGTTTCAC 57.541 39.130 10.64 0.00 31.20 3.18
662 2322 1.068083 ACAGCTGACGTGTCACCTG 59.932 57.895 23.35 18.98 44.66 4.00
671 2331 2.847234 TGTCACCTGTTCCCCGCT 60.847 61.111 0.00 0.00 0.00 5.52
743 2403 3.185188 CAGCGAGATTTATGACATTCCCG 59.815 47.826 0.00 0.00 0.00 5.14
749 2409 6.090898 CGAGATTTATGACATTCCCGATAACC 59.909 42.308 0.00 0.00 0.00 2.85
868 2532 7.926018 GCAAATAAATCCATCCTAATCCGTTTT 59.074 33.333 0.00 0.00 0.00 2.43
869 2533 9.463443 CAAATAAATCCATCCTAATCCGTTTTC 57.537 33.333 0.00 0.00 0.00 2.29
872 2536 4.210724 TCCATCCTAATCCGTTTTCGTT 57.789 40.909 0.00 0.00 42.35 3.85
873 2537 4.581868 TCCATCCTAATCCGTTTTCGTTT 58.418 39.130 0.00 0.00 42.35 3.60
874 2538 4.632688 TCCATCCTAATCCGTTTTCGTTTC 59.367 41.667 0.00 0.00 42.35 2.78
875 2539 4.393680 CCATCCTAATCCGTTTTCGTTTCA 59.606 41.667 0.00 0.00 42.35 2.69
876 2540 5.065988 CCATCCTAATCCGTTTTCGTTTCAT 59.934 40.000 0.00 0.00 42.35 2.57
878 2542 4.632688 TCCTAATCCGTTTTCGTTTCATCC 59.367 41.667 0.00 0.00 42.35 3.51
879 2543 4.393680 CCTAATCCGTTTTCGTTTCATCCA 59.606 41.667 0.00 0.00 42.35 3.41
880 2544 4.839668 AATCCGTTTTCGTTTCATCCAA 57.160 36.364 0.00 0.00 42.35 3.53
886 2567 4.673311 CGTTTTCGTTTCATCCAATTCGTT 59.327 37.500 0.00 0.00 38.65 3.85
888 2569 3.715618 TCGTTTCATCCAATTCGTTCG 57.284 42.857 0.00 0.00 0.00 3.95
911 2592 5.351233 AGCAATCGTTCGTCACAAAAATA 57.649 34.783 0.00 0.00 0.00 1.40
934 2615 0.811616 AAGCGATCGAGGTCATTGCC 60.812 55.000 21.57 0.00 31.68 4.52
1586 3490 6.430925 TCAGTCTAACAGCTAATGCATTTTGT 59.569 34.615 18.75 16.09 42.74 2.83
1628 3532 8.741603 TTATAAGTAAACCAGCCCAATAACTC 57.258 34.615 0.00 0.00 0.00 3.01
1686 3590 0.370273 CGCTATTGTGGCACTCGTTC 59.630 55.000 19.83 4.60 0.00 3.95
1789 3695 2.058595 GGAGCTAGGGTTCTGCCGA 61.059 63.158 0.00 0.00 38.44 5.54
1810 4156 3.308035 TTCTAGGGCGGAGATTGTAGA 57.692 47.619 0.00 0.00 0.00 2.59
1835 4181 1.006043 AGATGGAGGAAGACGAGGACA 59.994 52.381 0.00 0.00 0.00 4.02
1936 4283 1.076192 GTCTCCCGGCTCCCTAAGA 60.076 63.158 0.00 0.00 0.00 2.10
1958 4305 6.291377 AGAGAAGCCGAGCAAATAATGATTA 58.709 36.000 0.00 0.00 0.00 1.75
1966 4313 7.679638 GCCGAGCAAATAATGATTACTTCTTGT 60.680 37.037 0.00 0.00 0.00 3.16
2401 4758 2.990479 GAGGTGAGCCGGTGGAAT 59.010 61.111 1.90 0.00 40.50 3.01
2543 4929 0.689080 ACATGGCCGTCTGGAGATCT 60.689 55.000 0.00 0.00 37.49 2.75
2544 4930 0.033228 CATGGCCGTCTGGAGATCTC 59.967 60.000 14.75 14.75 37.49 2.75
2582 4968 1.141881 GTCCACGCGGATGTGATCT 59.858 57.895 12.47 0.00 45.33 2.75
2699 5085 2.593956 GGAGGTGAAGGGAAGGCGT 61.594 63.158 0.00 0.00 0.00 5.68
2904 5290 1.879380 CCCGAAAGAATTGCTCACACA 59.121 47.619 0.00 0.00 0.00 3.72
3103 5489 2.203294 GCCAGTGTGGAAACCCGT 60.203 61.111 0.00 0.00 40.96 5.28
3104 5490 1.071814 GCCAGTGTGGAAACCCGTA 59.928 57.895 0.00 0.00 40.96 4.02
3595 6372 1.375523 GTTGAGGACGCCGGTCATT 60.376 57.895 1.90 0.00 45.28 2.57
3620 6397 2.349755 GGGAGTAAACCAGCGGCA 59.650 61.111 1.45 0.00 0.00 5.69
4001 9480 7.000575 CAAATAATGATTGCTTCTTGCTTGG 57.999 36.000 0.00 0.00 43.37 3.61
4131 11922 3.073274 AGATAACTTGGGCCACAACTC 57.927 47.619 5.23 0.00 34.76 3.01
4166 11957 5.630121 CCCCTAATATGCTGGTCATAACAA 58.370 41.667 0.00 0.00 40.73 2.83
4167 11958 5.707298 CCCCTAATATGCTGGTCATAACAAG 59.293 44.000 0.00 0.00 40.73 3.16
4168 11959 6.465751 CCCCTAATATGCTGGTCATAACAAGA 60.466 42.308 0.00 0.00 40.73 3.02
4169 11960 6.998074 CCCTAATATGCTGGTCATAACAAGAA 59.002 38.462 0.00 0.00 40.73 2.52
4170 11961 7.667219 CCCTAATATGCTGGTCATAACAAGAAT 59.333 37.037 0.00 0.00 40.73 2.40
4196 11987 5.779529 AAAAGAATGAGAAGCTTTGAGCA 57.220 34.783 0.00 0.00 45.56 4.26
4301 12093 2.922740 ACTTGCCGAGGTTTCAACTA 57.077 45.000 0.00 0.00 0.00 2.24
4450 12244 7.653311 GCACTCTTTCAGGTACATTTTGATTTT 59.347 33.333 0.00 0.00 0.00 1.82
4503 12301 6.868339 AGAAGAAAGTTTTGTTGTTGTCTTGG 59.132 34.615 0.00 0.00 0.00 3.61
4527 12325 3.146847 ACTAAGAAAAAGCAGAACCGGG 58.853 45.455 6.32 0.00 0.00 5.73
4534 12332 1.415672 AAGCAGAACCGGGAAGTCCA 61.416 55.000 6.32 0.00 37.91 4.02
4689 12894 4.932146 AGAACAAGCCAAAACACACATAC 58.068 39.130 0.00 0.00 0.00 2.39
4857 13064 8.422973 TTTTCACAATTTTCTGAAAGTCATGG 57.577 30.769 2.75 0.00 37.61 3.66
4878 13085 9.403583 TCATGGTATGTTTCTTCCCTAAATTAC 57.596 33.333 0.00 0.00 0.00 1.89
4917 13124 4.586841 TGAACCCAAAATCAGAAAATCCGT 59.413 37.500 0.00 0.00 0.00 4.69
5164 13384 9.534565 TTATTCTTGCTAGCTATTCACTTACTG 57.465 33.333 17.23 0.00 0.00 2.74
5174 13394 5.517054 GCTATTCACTTACTGTCTTCTTCGG 59.483 44.000 0.00 0.00 0.00 4.30
5281 13502 1.064685 GCCAGCTTGGGTGTTATAGGT 60.065 52.381 4.65 0.00 38.19 3.08
5383 13604 9.804977 ATAGGAGTACTAATTCTGTAATACCGT 57.195 33.333 0.00 0.00 34.79 4.83
5535 13756 9.212641 GTATCTGCATGTGTTCATCAATACTAT 57.787 33.333 0.00 0.00 31.15 2.12
5536 13757 7.486802 TCTGCATGTGTTCATCAATACTATG 57.513 36.000 0.00 0.00 31.15 2.23
5537 13758 6.017687 TCTGCATGTGTTCATCAATACTATGC 60.018 38.462 0.00 0.00 37.91 3.14
5539 13760 6.095160 TGCATGTGTTCATCAATACTATGCAA 59.905 34.615 11.38 0.97 40.62 4.08
5540 13761 6.635641 GCATGTGTTCATCAATACTATGCAAG 59.364 38.462 0.00 0.00 37.67 4.01
5541 13762 7.680350 GCATGTGTTCATCAATACTATGCAAGT 60.680 37.037 0.00 0.00 37.67 3.16
5542 13763 7.075674 TGTGTTCATCAATACTATGCAAGTG 57.924 36.000 10.59 0.00 39.39 3.16
5543 13764 6.878389 TGTGTTCATCAATACTATGCAAGTGA 59.122 34.615 10.59 0.85 39.39 3.41
5630 13858 5.007136 GCTGAGAACTGAAATAATTCCTCCG 59.993 44.000 0.00 0.00 34.49 4.63
5821 14050 4.509970 CACTACCATCAGTTCACGTTTTGA 59.490 41.667 0.00 0.00 0.00 2.69
5871 14100 8.027771 CCGTACATTATCCTTAGTATCTTGTCC 58.972 40.741 0.00 0.00 0.00 4.02
5872 14101 8.027771 CGTACATTATCCTTAGTATCTTGTCCC 58.972 40.741 0.00 0.00 0.00 4.46
5903 14132 4.876679 GCTTGTTCTAGTGGGATCCTAAAC 59.123 45.833 12.58 7.55 0.00 2.01
6157 14386 5.249420 AGATTTGTTCAGGCTTTCTAGGTC 58.751 41.667 0.00 0.00 0.00 3.85
6309 14575 4.880886 TGATCTTGGATTGCGTTACATG 57.119 40.909 0.00 0.00 0.00 3.21
6346 14612 1.071987 CTGCTTGCTGTGGTCCAGA 59.928 57.895 0.00 0.00 44.49 3.86
6501 14767 7.254692 CCATCTGTGTGTTACATGATGATTCTC 60.255 40.741 19.63 0.00 41.87 2.87
6509 14775 7.115520 GTGTTACATGATGATTCTCCGTCTATG 59.884 40.741 0.00 0.00 0.00 2.23
6624 14890 3.181483 GGATGGTCGATACGTACCTTGTT 60.181 47.826 0.00 0.00 36.67 2.83
6645 14911 3.811083 TGTGAGTCATGTTAACCCGTTT 58.189 40.909 2.48 0.00 0.00 3.60
6699 15139 8.947055 AATGACAAGTCTGTTGCTAAAATTTT 57.053 26.923 8.75 8.75 35.30 1.82
7001 15443 1.009997 TGGGGCCCTTCAATTCTGAT 58.990 50.000 25.93 0.00 0.00 2.90
7039 15481 8.696043 ATCTAATTTAGGCAGCATTACATTCA 57.304 30.769 3.66 0.00 0.00 2.57
7040 15482 8.518430 TCTAATTTAGGCAGCATTACATTCAA 57.482 30.769 3.66 0.00 0.00 2.69
7043 15485 7.880160 ATTTAGGCAGCATTACATTCAAGTA 57.120 32.000 0.00 0.00 0.00 2.24
7094 15537 3.999051 CGATCGCTCGTTCCTTCC 58.001 61.111 0.26 0.00 40.07 3.46
7110 15553 0.249573 TTCCGAAACTTCTTCGCCGT 60.250 50.000 1.43 0.00 40.30 5.68
7327 15976 1.981533 GCAGCTGTTTGATTCTTTCGC 59.018 47.619 16.64 0.00 0.00 4.70
7530 16179 2.939103 CTCGGTGCTTCCAGGAATTAAG 59.061 50.000 1.09 0.00 35.57 1.85
7541 16190 7.148222 GCTTCCAGGAATTAAGGAAAAGTAGTC 60.148 40.741 1.09 0.00 40.63 2.59
7569 16218 1.522668 CAAGTTCATTGCACCCTCGA 58.477 50.000 0.00 0.00 30.65 4.04
7582 16231 4.520874 TGCACCCTCGATGAACAAAAATAA 59.479 37.500 0.00 0.00 0.00 1.40
7585 16234 6.589907 GCACCCTCGATGAACAAAAATAAAAT 59.410 34.615 0.00 0.00 0.00 1.82
7668 16317 9.778741 GGAGTAAAATGGATTTTCTTTTCCTTT 57.221 29.630 0.60 0.00 40.24 3.11
7810 16459 2.097466 AGCAAGTTTGTCAAGGTTCGTG 59.903 45.455 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.064371 TGTTGTCTTCCAAACATGTCAATTTTG 59.936 33.333 0.00 0.00 34.07 2.44
240 283 5.012046 GTGGGAAGAAAGGTGAAATGGAAAT 59.988 40.000 0.00 0.00 0.00 2.17
243 286 3.496331 GTGGGAAGAAAGGTGAAATGGA 58.504 45.455 0.00 0.00 0.00 3.41
321 364 5.831997 ACTAAAGTGCAATTGGTTCAGAAC 58.168 37.500 7.72 4.52 0.00 3.01
372 415 9.927668 ATCAAATTCTGACCGTGAATTATTTTT 57.072 25.926 0.00 0.00 41.54 1.94
375 418 8.279970 TCATCAAATTCTGACCGTGAATTATT 57.720 30.769 0.00 0.00 41.54 1.40
472 515 0.314618 AATGCTCATGCGTTGCAACA 59.685 45.000 28.01 11.26 45.65 3.33
530 573 1.212195 GGGAGACTTGGTATTGGGTCC 59.788 57.143 0.00 0.00 0.00 4.46
637 2297 1.933853 GACACGTCAGCTGTGAAACTT 59.066 47.619 14.67 0.00 39.73 2.66
662 2322 1.090052 CGAATCTTGGAGCGGGGAAC 61.090 60.000 0.00 0.00 0.00 3.62
671 2331 2.092291 GCGTCGCACGAATCTTGGA 61.092 57.895 13.44 0.00 46.05 3.53
714 2374 2.324014 ATAAATCTCGCTGCCCCGCA 62.324 55.000 0.00 0.00 36.92 5.69
868 2532 3.318886 TCGAACGAATTGGATGAAACGA 58.681 40.909 0.00 0.00 0.00 3.85
869 2533 3.659735 CTCGAACGAATTGGATGAAACG 58.340 45.455 0.00 0.00 0.00 3.60
872 2536 2.694213 TGCTCGAACGAATTGGATGAA 58.306 42.857 0.00 0.00 0.00 2.57
873 2537 2.378445 TGCTCGAACGAATTGGATGA 57.622 45.000 0.00 0.00 0.00 2.92
874 2538 3.611517 GATTGCTCGAACGAATTGGATG 58.388 45.455 0.00 0.00 0.00 3.51
875 2539 3.951979 GATTGCTCGAACGAATTGGAT 57.048 42.857 0.00 0.00 0.00 3.41
888 2569 2.941891 TTTGTGACGAACGATTGCTC 57.058 45.000 0.14 0.00 0.00 4.26
1053 2734 3.900892 GCGATCGGCGAGGGAGAA 61.901 66.667 18.30 0.00 44.57 2.87
1472 3374 6.710295 TGTTCTGAATTAGCTACAAAAGAGCA 59.290 34.615 0.00 0.77 42.69 4.26
1671 3575 0.319083 TACCGAACGAGTGCCACAAT 59.681 50.000 0.00 0.00 0.00 2.71
1686 3590 3.992260 AGTAGAGCAGCAATAGTACCG 57.008 47.619 0.00 0.00 0.00 4.02
1789 3695 3.829601 CTCTACAATCTCCGCCCTAGAAT 59.170 47.826 0.00 0.00 0.00 2.40
1810 4156 2.763448 CTCGTCTTCCTCCATCTTTCCT 59.237 50.000 0.00 0.00 0.00 3.36
1936 4283 6.058183 AGTAATCATTATTTGCTCGGCTTCT 58.942 36.000 0.00 0.00 0.00 2.85
2019 4366 5.104374 TCGTTATTAGGGTCGTTTGCTTAG 58.896 41.667 0.00 0.00 0.00 2.18
2322 4679 4.849329 GCGACGAGCCCTACACGG 62.849 72.222 0.00 0.00 40.81 4.94
2582 4968 2.082231 CTCTTCGTCGGTGGACTTCTA 58.918 52.381 0.00 0.00 41.16 2.10
2837 5223 0.612229 CCTGGCTCGCCTCATATCAT 59.388 55.000 9.65 0.00 36.94 2.45
2881 5267 0.695924 TGAGCAATTCTTTCGGGGGA 59.304 50.000 0.00 0.00 0.00 4.81
2888 5274 3.953612 TCAACCTGTGTGAGCAATTCTTT 59.046 39.130 0.00 0.00 0.00 2.52
2904 5290 1.280457 CCCCTCAACTAGCTCAACCT 58.720 55.000 0.00 0.00 0.00 3.50
2970 5356 1.079543 GTCATGCTCAGACACCGCT 60.080 57.895 0.00 0.00 36.06 5.52
3132 5539 1.596934 CGCCAGTCTACACCATGGT 59.403 57.895 13.00 13.00 35.17 3.55
3232 5639 1.743995 GGGCTGAATACAACCGCGT 60.744 57.895 4.92 0.00 33.48 6.01
3291 5698 3.508840 CTCCGCCGTTTCCATGCC 61.509 66.667 0.00 0.00 0.00 4.40
3595 6372 2.664398 GTTTACTCCCCGGCGGAA 59.336 61.111 30.79 14.48 41.40 4.30
3901 9351 2.182030 GCCTCTTCTCCACGACGG 59.818 66.667 0.00 0.00 0.00 4.79
4001 9480 7.775053 AGGAGAGGAGATGTATCAATCTAAC 57.225 40.000 0.00 0.00 37.03 2.34
4049 9530 4.866486 CGTTATTAGGGTCGTTTGCTTAGT 59.134 41.667 0.00 0.00 0.00 2.24
4105 11896 7.179269 AGTTGTGGCCCAAGTTATCTTATTAA 58.821 34.615 0.00 0.00 32.65 1.40
4106 11897 6.727394 AGTTGTGGCCCAAGTTATCTTATTA 58.273 36.000 0.00 0.00 32.65 0.98
4107 11898 5.580022 AGTTGTGGCCCAAGTTATCTTATT 58.420 37.500 0.00 0.00 32.65 1.40
4116 11907 0.466189 CAGTGAGTTGTGGCCCAAGT 60.466 55.000 12.50 12.50 39.46 3.16
4117 11908 1.174712 CCAGTGAGTTGTGGCCCAAG 61.175 60.000 0.00 0.00 32.51 3.61
4118 11909 1.152777 CCAGTGAGTTGTGGCCCAA 60.153 57.895 0.00 0.55 0.00 4.12
4126 11917 2.859992 GGCTTAGCCCAGTGAGTTG 58.140 57.895 13.12 0.00 44.06 3.16
4301 12093 7.122650 TGCCAAAATATAGCAAGTTAGAAGCTT 59.877 33.333 0.00 0.00 39.68 3.74
4456 12251 9.500785 CTTCTTTATCCTGAACTTCTCTTTTCT 57.499 33.333 0.00 0.00 0.00 2.52
4457 12252 9.495572 TCTTCTTTATCCTGAACTTCTCTTTTC 57.504 33.333 0.00 0.00 0.00 2.29
4503 12301 5.064834 CCCGGTTCTGCTTTTTCTTAGTATC 59.935 44.000 0.00 0.00 0.00 2.24
4527 12325 8.794335 AGAACCTTATAAACAGAATGGACTTC 57.206 34.615 0.00 0.00 43.62 3.01
4753 12959 2.930040 TCTGCGAGCTAAGGAAAAATCG 59.070 45.455 0.00 0.00 0.00 3.34
4917 13124 6.642733 ACTTAAAGGGATCAATCCTCAGAA 57.357 37.500 8.87 0.00 46.35 3.02
5149 13369 6.326375 CGAAGAAGACAGTAAGTGAATAGCT 58.674 40.000 0.00 0.00 0.00 3.32
5281 13502 5.811796 TGTAGGTTACCTTAACAAGAGCA 57.188 39.130 10.01 0.00 40.39 4.26
5480 13701 7.712639 TCATCACCTGCTCTTATAATCAAGTTC 59.287 37.037 0.00 0.00 0.00 3.01
5497 13718 4.820173 ACATGCAGATACAATCATCACCTG 59.180 41.667 0.00 0.00 0.00 4.00
5630 13858 0.961019 TCTCCATGCAAAACAGGCAC 59.039 50.000 0.00 0.00 45.23 5.01
5821 14050 5.069781 GTCTAGCTTACATTCTGGACCTGAT 59.930 44.000 1.39 0.00 35.57 2.90
5871 14100 2.554032 CACTAGAACAAGCCTGGTTTGG 59.446 50.000 24.30 10.67 0.00 3.28
5872 14101 2.554032 CCACTAGAACAAGCCTGGTTTG 59.446 50.000 20.02 20.02 0.00 2.93
5903 14132 7.948034 TTGGATTTATTAACTGTAAGGTGGG 57.052 36.000 0.00 0.00 39.30 4.61
6238 14504 4.887655 GGTAGCCACCTGCATATAAACTTT 59.112 41.667 0.00 0.00 44.83 2.66
6346 14612 6.318648 TCAGAATTTACCATCTGCGCTAAAAT 59.681 34.615 9.73 0.00 42.21 1.82
6501 14767 4.094739 TGCATGTCAATCAAACATAGACGG 59.905 41.667 0.00 0.00 35.62 4.79
6509 14775 5.927954 AAATTGGTGCATGTCAATCAAAC 57.072 34.783 11.47 0.00 33.03 2.93
6624 14890 3.478857 AACGGGTTAACATGACTCACA 57.521 42.857 8.10 0.00 0.00 3.58
6645 14911 8.052141 TGTGATGATAATGGAAAGGTAATGACA 58.948 33.333 0.00 0.00 0.00 3.58
6942 15384 3.231734 TTGGAGCATGACCAAGTCG 57.768 52.632 16.99 0.00 41.64 4.18
7001 15443 8.382405 TGCCTAAATTAGATATACATGCCTTGA 58.618 33.333 0.83 0.00 0.00 3.02
7094 15537 1.411089 CGACGGCGAAGAAGTTTCG 59.589 57.895 16.62 5.80 44.06 3.46
7325 15974 3.209097 CCAATACCCCAAGGCGCG 61.209 66.667 0.00 0.00 36.11 6.86
7327 15976 0.834612 TACTCCAATACCCCAAGGCG 59.165 55.000 0.00 0.00 36.11 5.52
7398 16047 6.426328 GGTAGCAATCAGATAACTGGATCAAG 59.574 42.308 0.00 0.00 43.60 3.02
7461 16110 7.805163 TCCATCACTAATCAGTAATCACCAAT 58.195 34.615 0.00 0.00 32.21 3.16
7516 16165 7.064728 CGACTACTTTTCCTTAATTCCTGGAAG 59.935 40.741 15.34 0.53 40.43 3.46
7530 16179 0.796927 GGTGCAGCGACTACTTTTCC 59.203 55.000 0.00 0.00 0.00 3.13
7541 16190 0.387622 CAATGAACTTGGGTGCAGCG 60.388 55.000 10.24 0.00 33.98 5.18
7591 16240 5.691754 CGCCTTTAATTCAGAGTTTTTGCTT 59.308 36.000 0.00 0.00 0.00 3.91
7668 16317 6.519382 TGTTTGCATGATGAACCATTTTGTA 58.481 32.000 0.00 0.00 0.00 2.41
7810 16459 1.000506 GCCAATCATGCATGGTGATCC 59.999 52.381 25.97 11.95 39.00 3.36
7821 16470 1.261989 CAAAACTCGCGCCAATCATG 58.738 50.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.