Multiple sequence alignment - TraesCS4D01G243500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G243500 chr4D 100.000 6334 0 0 1 6334 406207753 406201420 0.000000e+00 11697.0
1 TraesCS4D01G243500 chr4B 92.108 3497 141 48 1 3421 505505489 505502052 0.000000e+00 4804.0
2 TraesCS4D01G243500 chr4B 93.653 898 30 6 5438 6334 505498812 505497941 0.000000e+00 1317.0
3 TraesCS4D01G243500 chr4B 90.494 547 27 4 3924 4448 505501581 505501038 0.000000e+00 699.0
4 TraesCS4D01G243500 chr4B 91.797 512 18 6 4923 5424 505499371 505498874 0.000000e+00 691.0
5 TraesCS4D01G243500 chr4B 94.486 399 16 3 3536 3929 505502007 505501610 1.510000e-170 610.0
6 TraesCS4D01G243500 chr4B 87.909 397 33 7 3536 3923 648942988 648943378 2.690000e-123 453.0
7 TraesCS4D01G243500 chr4B 88.506 261 16 6 3171 3421 560292333 560292077 2.870000e-78 303.0
8 TraesCS4D01G243500 chr4B 84.644 267 22 8 1130 1381 165045777 165045515 1.360000e-61 248.0
9 TraesCS4D01G243500 chr4B 88.372 172 14 3 3171 3338 648942727 648942896 1.080000e-47 202.0
10 TraesCS4D01G243500 chr4B 81.319 182 9 16 4734 4897 505499539 505499365 2.400000e-24 124.0
11 TraesCS4D01G243500 chr4A 91.762 2537 113 49 445 2959 63819885 63817423 0.000000e+00 3439.0
12 TraesCS4D01G243500 chr4A 94.917 905 32 9 5438 6330 63814808 63813906 0.000000e+00 1404.0
13 TraesCS4D01G243500 chr4A 93.836 584 27 5 3536 4113 63817007 63816427 0.000000e+00 870.0
14 TraesCS4D01G243500 chr4A 88.227 739 39 21 4712 5424 63815586 63814870 0.000000e+00 839.0
15 TraesCS4D01G243500 chr4A 91.940 397 22 4 3536 3923 695668613 695668218 1.200000e-151 547.0
16 TraesCS4D01G243500 chr4A 94.362 337 18 1 4113 4448 63816393 63816057 3.390000e-142 516.0
17 TraesCS4D01G243500 chr4A 90.076 393 24 6 2983 3367 63817433 63817048 4.410000e-136 496.0
18 TraesCS4D01G243500 chr4A 88.824 170 12 3 3171 3336 695668873 695668707 1.080000e-47 202.0
19 TraesCS4D01G243500 chr4A 81.452 248 27 7 4493 4740 63816049 63815821 1.080000e-42 185.0
20 TraesCS4D01G243500 chr6B 90.680 397 27 4 3536 3923 251104813 251105208 2.620000e-143 520.0
21 TraesCS4D01G243500 chr6B 88.406 276 29 1 3 278 676414008 676414280 4.730000e-86 329.0
22 TraesCS4D01G243500 chr6B 92.478 226 12 2 3536 3757 306014250 306014026 1.020000e-82 318.0
23 TraesCS4D01G243500 chr6B 87.739 261 19 6 3171 3421 306014552 306014295 6.210000e-75 292.0
24 TraesCS4D01G243500 chr6B 93.258 89 5 1 3171 3259 251103949 251104036 5.150000e-26 130.0
25 TraesCS4D01G243500 chr6B 83.784 74 11 1 3437 3509 543727491 543727418 1.140000e-07 69.4
26 TraesCS4D01G243500 chr7D 88.718 390 36 4 4112 4500 205526938 205526556 2.670000e-128 470.0
27 TraesCS4D01G243500 chr7D 87.023 131 9 4 3298 3421 177199278 177199149 2.380000e-29 141.0
28 TraesCS4D01G243500 chr5D 87.212 391 40 10 4112 4500 219453374 219452992 2.710000e-118 436.0
29 TraesCS4D01G243500 chr5D 97.959 98 2 0 3536 3633 342006835 342006738 3.040000e-38 171.0
30 TraesCS4D01G243500 chr5D 97.959 98 2 0 3536 3633 449367776 449367679 3.040000e-38 171.0
31 TraesCS4D01G243500 chr5D 89.796 98 9 1 4918 5015 219452789 219452693 2.400000e-24 124.0
32 TraesCS4D01G243500 chr2D 84.694 392 48 7 4112 4500 216881224 216880842 1.290000e-101 381.0
33 TraesCS4D01G243500 chr2D 86.364 132 10 3 3298 3421 109569096 109568965 3.080000e-28 137.0
34 TraesCS4D01G243500 chr2D 86.260 131 10 5 3298 3421 61504783 61504654 1.110000e-27 135.0
35 TraesCS4D01G243500 chr2A 89.399 283 24 4 1 282 610705474 610705751 1.010000e-92 351.0
36 TraesCS4D01G243500 chr7A 88.809 277 28 1 1 277 721186045 721186318 2.830000e-88 337.0
37 TraesCS4D01G243500 chr7A 88.000 75 6 3 3421 3495 726995628 726995699 1.130000e-12 86.1
38 TraesCS4D01G243500 chr3D 86.071 280 30 4 4224 4500 294603094 294602821 6.210000e-75 292.0
39 TraesCS4D01G243500 chr3B 86.022 279 31 3 4224 4500 580881842 580881570 6.210000e-75 292.0
40 TraesCS4D01G243500 chr3B 86.590 261 23 5 3171 3421 750434555 750434297 1.740000e-70 278.0
41 TraesCS4D01G243500 chr1A 97.959 98 2 0 3536 3633 476758469 476758372 3.040000e-38 171.0
42 TraesCS4D01G243500 chr1A 95.455 44 2 0 3419 3462 433554432 433554389 3.170000e-08 71.3
43 TraesCS4D01G243500 chr1A 95.455 44 2 0 3419 3462 433757407 433757364 3.170000e-08 71.3
44 TraesCS4D01G243500 chr1D 85.714 133 10 4 3298 3421 164908196 164908328 1.430000e-26 132.0
45 TraesCS4D01G243500 chr1B 85.106 94 12 2 166 258 645986565 645986473 1.880000e-15 95.3
46 TraesCS4D01G243500 chr1B 84.043 94 13 2 166 258 645963828 645963736 8.750000e-14 89.8
47 TraesCS4D01G243500 chr1B 84.043 94 13 2 166 258 646013266 646013174 8.750000e-14 89.8
48 TraesCS4D01G243500 chr6A 85.227 88 13 0 171 258 1751747 1751834 2.430000e-14 91.6
49 TraesCS4D01G243500 chrUn 88.000 75 6 3 3421 3495 83668020 83668091 1.130000e-12 86.1
50 TraesCS4D01G243500 chr6D 85.294 68 5 5 3421 3487 420956353 420956290 1.470000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G243500 chr4D 406201420 406207753 6333 True 11697.000000 11697 100.000000 1 6334 1 chr4D.!!$R1 6333
1 TraesCS4D01G243500 chr4B 505497941 505505489 7548 True 1374.166667 4804 90.642833 1 6334 6 chr4B.!!$R3 6333
2 TraesCS4D01G243500 chr4B 648942727 648943378 651 False 327.500000 453 88.140500 3171 3923 2 chr4B.!!$F1 752
3 TraesCS4D01G243500 chr4A 63813906 63819885 5979 True 1107.000000 3439 90.661714 445 6330 7 chr4A.!!$R1 5885
4 TraesCS4D01G243500 chr4A 695668218 695668873 655 True 374.500000 547 90.382000 3171 3923 2 chr4A.!!$R2 752
5 TraesCS4D01G243500 chr6B 251103949 251105208 1259 False 325.000000 520 91.969000 3171 3923 2 chr6B.!!$F2 752
6 TraesCS4D01G243500 chr6B 306014026 306014552 526 True 305.000000 318 90.108500 3171 3757 2 chr6B.!!$R2 586
7 TraesCS4D01G243500 chr5D 219452693 219453374 681 True 280.000000 436 88.504000 4112 5015 2 chr5D.!!$R3 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.040692 CGCGGATCATGCAAGATTGG 60.041 55.000 5.81 2.68 0.00 3.16 F
535 560 0.179026 CTGCCAGATGTCCATCCCTG 60.179 60.000 3.70 0.00 38.58 4.45 F
1483 1536 0.179121 TATTGCCTGATTCGTCGCGT 60.179 50.000 5.77 0.00 0.00 6.01 F
2377 2431 0.539901 ACGTCCAGTGCTCCACTAGT 60.540 55.000 0.00 0.00 43.43 2.57 F
2939 3022 0.181350 GATGATGGGGCCGTTCTTCT 59.819 55.000 0.00 0.00 0.00 2.85 F
3093 3176 0.877071 CCCACATTGTCAGTCAGTGC 59.123 55.000 0.00 0.00 37.29 4.40 F
3520 4184 1.073284 GGGGAGTACAAGCCACTTTGA 59.927 52.381 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1262 1315 1.621672 CCACTTCTCCTCCTGCTCCC 61.622 65.0 0.0 0.0 0.00 4.30 R
2361 2415 0.114364 TGGACTAGTGGAGCACTGGA 59.886 55.0 0.0 0.0 44.01 3.86 R
2469 2532 0.365523 CCACGACTAATCACGCAACG 59.634 55.0 0.0 0.0 0.00 4.10 R
3499 4163 0.036306 AAAGTGGCTTGTACTCCCCG 59.964 55.0 0.0 0.0 0.00 5.73 R
4328 5089 0.183492 TGCCATGTATCCCTGGAAGC 59.817 55.0 0.0 0.0 34.24 3.86 R
4465 5227 0.761187 ACCAAACAGAGCAGAGCAGA 59.239 50.0 0.0 0.0 0.00 4.26 R
5351 7418 0.179097 GTTCCAGCAGAGGATCGACC 60.179 60.0 0.0 0.0 42.67 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.040692 CGCGGATCATGCAAGATTGG 60.041 55.000 5.81 2.68 0.00 3.16
56 57 4.322801 CCCTATTCCGTGAGACAAAGTTCT 60.323 45.833 0.00 0.00 0.00 3.01
68 69 4.452455 AGACAAAGTTCTTGCTTCGTATGG 59.548 41.667 0.00 0.00 0.00 2.74
69 70 4.385825 ACAAAGTTCTTGCTTCGTATGGA 58.614 39.130 0.00 0.00 0.00 3.41
73 74 5.803020 AGTTCTTGCTTCGTATGGATTTC 57.197 39.130 0.00 0.00 0.00 2.17
110 111 2.178912 TTTTCATCCCCGTGAGTGTC 57.821 50.000 0.00 0.00 0.00 3.67
121 122 0.886043 GTGAGTGTCATGTGCTGGCA 60.886 55.000 0.00 0.00 37.05 4.92
139 140 2.281070 CACCTGCTTGCTGGTCGT 60.281 61.111 18.97 0.00 33.75 4.34
145 146 0.963225 TGCTTGCTGGTCGTAGTGTA 59.037 50.000 0.00 0.00 0.00 2.90
149 150 1.624336 TGCTGGTCGTAGTGTAAGGT 58.376 50.000 0.00 0.00 0.00 3.50
181 182 1.821759 CCACCGTGTTTGGCTCACA 60.822 57.895 0.00 0.00 35.79 3.58
182 183 1.648720 CACCGTGTTTGGCTCACAG 59.351 57.895 8.22 1.12 35.79 3.66
201 202 1.065126 AGGCTTGCCCTCTGATGTAAC 60.065 52.381 8.17 0.00 41.21 2.50
202 203 1.340017 GGCTTGCCCTCTGATGTAACA 60.340 52.381 0.00 0.00 0.00 2.41
226 227 1.231958 TTGTGGCCGTCGATTTGGTC 61.232 55.000 0.00 0.00 0.00 4.02
242 243 1.041437 GGTCGAGCCCACTAGCTAAT 58.959 55.000 2.39 0.00 45.15 1.73
249 250 2.107204 AGCCCACTAGCTAATGGAATGG 59.893 50.000 22.67 6.81 42.70 3.16
256 257 3.959495 AGCTAATGGAATGGATGGTGT 57.041 42.857 0.00 0.00 0.00 4.16
258 259 3.956199 AGCTAATGGAATGGATGGTGTTG 59.044 43.478 0.00 0.00 0.00 3.33
273 274 2.918600 GGTGTTGTTCCACGTCAAAAAC 59.081 45.455 3.68 3.68 36.16 2.43
277 278 5.119434 GTGTTGTTCCACGTCAAAAACAAAT 59.881 36.000 12.20 0.00 41.67 2.32
315 316 4.842531 TCAACAAGCTGATGGAGGAATA 57.157 40.909 0.00 0.00 0.00 1.75
360 361 2.883574 CATGCATGCAACGGAATTTCT 58.116 42.857 26.68 0.00 0.00 2.52
361 362 3.255725 CATGCATGCAACGGAATTTCTT 58.744 40.909 26.68 0.00 0.00 2.52
362 363 2.945278 TGCATGCAACGGAATTTCTTC 58.055 42.857 20.30 0.00 0.00 2.87
363 364 2.295629 TGCATGCAACGGAATTTCTTCA 59.704 40.909 20.30 0.00 32.70 3.02
364 365 3.243670 TGCATGCAACGGAATTTCTTCAA 60.244 39.130 20.30 0.00 32.70 2.69
365 366 3.365820 GCATGCAACGGAATTTCTTCAAG 59.634 43.478 14.21 0.00 32.70 3.02
390 391 6.151144 GTCAAGTACCAATAGCCTCATGTTTT 59.849 38.462 0.00 0.00 0.00 2.43
522 533 0.319297 GCAGAAACCAAAGCTGCCAG 60.319 55.000 0.00 0.00 46.94 4.85
533 558 1.527844 GCTGCCAGATGTCCATCCC 60.528 63.158 0.00 0.00 38.58 3.85
534 559 1.992519 GCTGCCAGATGTCCATCCCT 61.993 60.000 0.00 0.00 38.58 4.20
535 560 0.179026 CTGCCAGATGTCCATCCCTG 60.179 60.000 3.70 0.00 38.58 4.45
537 562 1.917495 CCAGATGTCCATCCCTGCA 59.083 57.895 3.70 0.00 38.58 4.41
539 564 1.386533 CAGATGTCCATCCCTGCAAC 58.613 55.000 3.70 0.00 38.58 4.17
624 653 4.530857 CCGTCCCCTCGCACCATC 62.531 72.222 0.00 0.00 0.00 3.51
625 654 3.770040 CGTCCCCTCGCACCATCA 61.770 66.667 0.00 0.00 0.00 3.07
626 655 2.668632 GTCCCCTCGCACCATCAA 59.331 61.111 0.00 0.00 0.00 2.57
627 656 1.745489 GTCCCCTCGCACCATCAAC 60.745 63.158 0.00 0.00 0.00 3.18
800 841 1.984570 GCCCTGCCCTTCCCTTTTC 60.985 63.158 0.00 0.00 0.00 2.29
888 929 1.523258 CCCATCGAGGCAAGCAGAG 60.523 63.158 0.00 0.00 35.39 3.35
920 961 2.588877 CGCCCATCCGTCCACATC 60.589 66.667 0.00 0.00 0.00 3.06
921 962 2.203209 GCCCATCCGTCCACATCC 60.203 66.667 0.00 0.00 0.00 3.51
922 963 2.108976 CCCATCCGTCCACATCCG 59.891 66.667 0.00 0.00 0.00 4.18
923 964 2.588877 CCATCCGTCCACATCCGC 60.589 66.667 0.00 0.00 0.00 5.54
924 965 2.186644 CATCCGTCCACATCCGCA 59.813 61.111 0.00 0.00 0.00 5.69
1479 1532 3.863424 TCGAACTTATTGCCTGATTCGTC 59.137 43.478 0.00 0.00 39.79 4.20
1483 1536 0.179121 TATTGCCTGATTCGTCGCGT 60.179 50.000 5.77 0.00 0.00 6.01
1532 1585 2.414161 GGTTGATCGTACTGCTTTTGGC 60.414 50.000 0.00 0.00 42.22 4.52
1896 1949 4.045104 GCCAATCTGTCAGATGTACGTAG 58.955 47.826 16.15 2.23 34.65 3.51
1935 1989 2.356553 GTACACAGTGCCGCCGAA 60.357 61.111 0.00 0.00 0.00 4.30
2035 2089 0.622136 ATTGCAGGTGGAGATGCTGA 59.378 50.000 0.00 0.00 42.98 4.26
2361 2415 7.549839 TCATAATACTGTTTTAGCCACTACGT 58.450 34.615 0.00 0.00 0.00 3.57
2377 2431 0.539901 ACGTCCAGTGCTCCACTAGT 60.540 55.000 0.00 0.00 43.43 2.57
2410 2464 8.166061 TGCTTATCTTATTATCCCATTGCTTCT 58.834 33.333 0.00 0.00 0.00 2.85
2416 2470 1.767759 ATCCCATTGCTTCTTTCCGG 58.232 50.000 0.00 0.00 0.00 5.14
2419 2473 1.892474 CCCATTGCTTCTTTCCGGAAA 59.108 47.619 27.33 27.33 0.00 3.13
2430 2484 6.620949 GCTTCTTTCCGGAAACAAGATTAGTC 60.621 42.308 35.26 19.68 30.91 2.59
2433 2487 4.106029 TCCGGAAACAAGATTAGTCTCG 57.894 45.455 0.00 0.00 32.15 4.04
2436 2490 3.596214 GGAAACAAGATTAGTCTCGGCA 58.404 45.455 0.00 0.00 32.15 5.69
2448 2502 2.496070 AGTCTCGGCACTTAACATGCTA 59.504 45.455 6.86 0.00 42.93 3.49
2449 2503 2.603560 GTCTCGGCACTTAACATGCTAC 59.396 50.000 6.86 0.00 42.93 3.58
2453 2507 1.396996 GGCACTTAACATGCTACCGTG 59.603 52.381 6.86 0.00 42.93 4.94
2458 2512 4.328983 CACTTAACATGCTACCGTGGTTAG 59.671 45.833 0.00 0.00 32.13 2.34
2459 2513 1.734163 AACATGCTACCGTGGTTAGC 58.266 50.000 0.00 5.32 37.35 3.09
2485 2548 0.294887 GAGCGTTGCGTGATTAGTCG 59.705 55.000 0.00 0.00 0.00 4.18
2489 2552 1.425412 GTTGCGTGATTAGTCGTGGT 58.575 50.000 0.00 0.00 0.00 4.16
2552 2615 1.446099 TCAGCGACTTGACGGCATC 60.446 57.895 0.00 0.00 0.00 3.91
2588 2651 2.084546 GATTGGGTCCCTTTTGTCTCG 58.915 52.381 10.00 0.00 0.00 4.04
2724 2803 5.531122 TTCGTAGGGAGATGAGTAATTGG 57.469 43.478 0.00 0.00 0.00 3.16
2754 2833 0.462581 CGGGTCCACCACAGATCATG 60.463 60.000 0.00 0.00 40.22 3.07
2779 2861 1.672356 ATCCATAGATTGGCGCGGC 60.672 57.895 27.61 27.61 46.01 6.53
2926 3008 0.251033 ATGTGGCGGATGGGATGATG 60.251 55.000 0.00 0.00 0.00 3.07
2932 3015 2.034687 GATGGGATGATGGGGCCG 59.965 66.667 0.00 0.00 0.00 6.13
2939 3022 0.181350 GATGATGGGGCCGTTCTTCT 59.819 55.000 0.00 0.00 0.00 2.85
2951 3034 3.304057 GCCGTTCTTCTTTTCTTCCACAG 60.304 47.826 0.00 0.00 0.00 3.66
2964 3047 5.032327 TCTTCCACAGTAGCTCGATACTA 57.968 43.478 0.00 0.00 34.21 1.82
2965 3048 4.815308 TCTTCCACAGTAGCTCGATACTAC 59.185 45.833 14.76 14.76 40.28 2.73
2967 3050 5.541953 TCCACAGTAGCTCGATACTACTA 57.458 43.478 21.39 8.95 46.68 1.82
2968 3051 5.295950 TCCACAGTAGCTCGATACTACTAC 58.704 45.833 21.39 12.33 46.68 2.73
2969 3052 5.055144 CCACAGTAGCTCGATACTACTACA 58.945 45.833 21.39 0.00 46.68 2.74
2970 3053 5.050227 CCACAGTAGCTCGATACTACTACAC 60.050 48.000 21.39 3.55 46.68 2.90
2971 3054 5.522824 CACAGTAGCTCGATACTACTACACA 59.477 44.000 21.39 0.00 46.68 3.72
2972 3055 5.523188 ACAGTAGCTCGATACTACTACACAC 59.477 44.000 21.39 2.40 46.68 3.82
2973 3056 5.754406 CAGTAGCTCGATACTACTACACACT 59.246 44.000 21.39 4.28 46.68 3.55
2974 3057 6.922407 CAGTAGCTCGATACTACTACACACTA 59.078 42.308 21.39 0.00 46.68 2.74
2975 3058 7.115236 CAGTAGCTCGATACTACTACACACTAG 59.885 44.444 21.39 8.58 46.68 2.57
2976 3059 4.751098 AGCTCGATACTACTACACACTAGC 59.249 45.833 0.00 0.00 0.00 3.42
2977 3060 4.751098 GCTCGATACTACTACACACTAGCT 59.249 45.833 0.00 0.00 0.00 3.32
2978 3061 5.107375 GCTCGATACTACTACACACTAGCTC 60.107 48.000 0.00 0.00 0.00 4.09
2979 3062 5.295950 TCGATACTACTACACACTAGCTCC 58.704 45.833 0.00 0.00 0.00 4.70
2980 3063 5.055144 CGATACTACTACACACTAGCTCCA 58.945 45.833 0.00 0.00 0.00 3.86
2981 3064 5.701750 CGATACTACTACACACTAGCTCCAT 59.298 44.000 0.00 0.00 0.00 3.41
2982 3065 6.872547 CGATACTACTACACACTAGCTCCATA 59.127 42.308 0.00 0.00 0.00 2.74
2983 3066 7.148606 CGATACTACTACACACTAGCTCCATAC 60.149 44.444 0.00 0.00 0.00 2.39
2984 3067 6.003859 ACTACTACACACTAGCTCCATACT 57.996 41.667 0.00 0.00 0.00 2.12
2985 3068 7.134362 ACTACTACACACTAGCTCCATACTA 57.866 40.000 0.00 0.00 0.00 1.82
3035 3118 6.492007 AAATAGCTTTGCCATATGATCTCG 57.508 37.500 3.65 0.00 0.00 4.04
3073 3156 4.394729 ACCCGTCAATGATTGTTAGTTGT 58.605 39.130 4.93 0.00 0.00 3.32
3080 3163 6.009589 TCAATGATTGTTAGTTGTCCCACAT 58.990 36.000 4.93 0.00 0.00 3.21
3093 3176 0.877071 CCCACATTGTCAGTCAGTGC 59.123 55.000 0.00 0.00 37.29 4.40
3094 3177 0.877071 CCACATTGTCAGTCAGTGCC 59.123 55.000 0.00 0.00 37.29 5.01
3095 3178 1.596603 CACATTGTCAGTCAGTGCCA 58.403 50.000 0.00 0.00 37.29 4.92
3096 3179 1.534163 CACATTGTCAGTCAGTGCCAG 59.466 52.381 0.00 0.00 37.29 4.85
3097 3180 1.141657 ACATTGTCAGTCAGTGCCAGT 59.858 47.619 0.00 0.00 37.29 4.00
3098 3181 1.534163 CATTGTCAGTCAGTGCCAGTG 59.466 52.381 0.00 0.00 0.00 3.66
3239 3322 2.234908 GACCTGTGCCAGTGAGATACTT 59.765 50.000 0.00 0.00 37.60 2.24
3240 3323 2.639839 ACCTGTGCCAGTGAGATACTTT 59.360 45.455 0.00 0.00 37.60 2.66
3268 3916 8.309163 TGTCAATTTTAAATCATTGCAGGTTC 57.691 30.769 7.47 0.00 31.47 3.62
3280 3931 6.061441 TCATTGCAGGTTCTGTTCTAAAAGA 58.939 36.000 0.00 0.00 33.43 2.52
3308 3959 5.736951 AATCTTCTAGTTCTGTGAGCTGT 57.263 39.130 0.00 0.00 0.00 4.40
3359 4013 7.721402 TCTGTTCTAGAGGAAAATGATCTAGC 58.279 38.462 4.03 0.00 41.44 3.42
3383 4043 7.339721 AGCAGTAGTAGTTCTGAGCATTTACTA 59.660 37.037 8.28 0.00 34.02 1.82
3390 4050 9.635520 GTAGTTCTGAGCATTTACTAGTTTGTA 57.364 33.333 0.00 0.00 0.00 2.41
3442 4106 9.549984 AAAGTACTCCCTCTCTAAAGAAATACT 57.450 33.333 0.00 0.00 0.00 2.12
3465 4129 8.596781 ACTATAAGAGTGTTTAGATCACCACT 57.403 34.615 0.00 0.82 40.67 4.00
3466 4130 9.036980 ACTATAAGAGTGTTTAGATCACCACTT 57.963 33.333 0.00 0.00 38.23 3.16
3467 4131 9.877178 CTATAAGAGTGTTTAGATCACCACTTT 57.123 33.333 0.00 0.00 38.23 2.66
3469 4133 9.877178 ATAAGAGTGTTTAGATCACCACTTTAG 57.123 33.333 0.00 0.00 38.23 1.85
3470 4134 7.304497 AGAGTGTTTAGATCACCACTTTAGT 57.696 36.000 0.00 0.00 38.23 2.24
3471 4135 8.418597 AGAGTGTTTAGATCACCACTTTAGTA 57.581 34.615 0.00 0.00 38.23 1.82
3472 4136 8.867097 AGAGTGTTTAGATCACCACTTTAGTAA 58.133 33.333 0.00 0.00 38.23 2.24
3473 4137 9.654663 GAGTGTTTAGATCACCACTTTAGTAAT 57.345 33.333 0.00 0.00 38.23 1.89
3474 4138 9.436957 AGTGTTTAGATCACCACTTTAGTAATG 57.563 33.333 0.00 0.00 34.64 1.90
3475 4139 9.216117 GTGTTTAGATCACCACTTTAGTAATGT 57.784 33.333 0.00 0.00 0.00 2.71
3481 4145 9.216117 AGATCACCACTTTAGTAATGTAAACAC 57.784 33.333 0.00 0.00 0.00 3.32
3482 4146 9.216117 GATCACCACTTTAGTAATGTAAACACT 57.784 33.333 1.41 0.00 0.00 3.55
3483 4147 8.967664 TCACCACTTTAGTAATGTAAACACTT 57.032 30.769 1.41 0.00 0.00 3.16
3484 4148 9.398538 TCACCACTTTAGTAATGTAAACACTTT 57.601 29.630 1.41 0.00 0.00 2.66
3501 4165 8.663771 AAACACTTTTATATTTCTTAACGCGG 57.336 30.769 12.47 0.00 0.00 6.46
3502 4166 6.778108 ACACTTTTATATTTCTTAACGCGGG 58.222 36.000 12.47 0.00 0.00 6.13
3503 4167 6.183360 ACACTTTTATATTTCTTAACGCGGGG 60.183 38.462 12.47 0.00 0.00 5.73
3504 4168 6.037391 CACTTTTATATTTCTTAACGCGGGGA 59.963 38.462 12.47 0.00 0.00 4.81
3505 4169 6.259387 ACTTTTATATTTCTTAACGCGGGGAG 59.741 38.462 12.47 4.67 0.00 4.30
3506 4170 3.832615 ATATTTCTTAACGCGGGGAGT 57.167 42.857 12.47 0.00 0.00 3.85
3507 4171 4.942761 ATATTTCTTAACGCGGGGAGTA 57.057 40.909 12.47 0.00 0.00 2.59
3520 4184 1.073284 GGGGAGTACAAGCCACTTTGA 59.927 52.381 0.00 0.00 0.00 2.69
3577 4257 2.028567 CCCAACGGGCATGTTTAAATGT 60.029 45.455 0.00 0.00 35.35 2.71
3718 4404 2.094286 TGCCCACAACAACAACAAGAAG 60.094 45.455 0.00 0.00 0.00 2.85
3814 4500 8.418662 TCATTGTGTGTTACTGTAGAACTACTT 58.581 33.333 12.25 3.60 37.00 2.24
3841 4532 2.949177 AACTATTGTGCCACTGGACA 57.051 45.000 0.00 0.00 0.00 4.02
3870 4561 1.334054 GCTCAAGTGCGCATTTTCAG 58.666 50.000 15.91 14.70 0.00 3.02
3882 4574 3.446799 GCATTTTCAGTGCACTGTCAAA 58.553 40.909 38.41 34.21 44.12 2.69
3898 4590 7.253750 GCACTGTCAAAACTTATTTGTTGACTG 60.254 37.037 16.04 16.04 38.81 3.51
3929 4655 1.203287 GAATTGGCAACCCTCTCTTGC 59.797 52.381 0.00 0.00 42.84 4.01
3976 4702 9.060347 CAGATCATACAGTTTGTAATTATGGCT 57.940 33.333 0.00 0.00 36.31 4.75
3991 4717 7.515004 AATTATGGCTGAGATATCCACCATA 57.485 36.000 12.17 12.17 38.74 2.74
4007 4733 4.276926 CCACCATAATAGGCTTTCAGCTTC 59.723 45.833 0.00 0.00 41.99 3.86
4093 4819 6.495181 TCTCTCACTCTGTACATTCTTCCTTT 59.505 38.462 0.00 0.00 0.00 3.11
4094 4820 7.015682 TCTCTCACTCTGTACATTCTTCCTTTT 59.984 37.037 0.00 0.00 0.00 2.27
4095 4821 7.509546 TCTCACTCTGTACATTCTTCCTTTTT 58.490 34.615 0.00 0.00 0.00 1.94
4123 4883 6.678568 TGGCCCAAAGATGAAAGAAAATTA 57.321 33.333 0.00 0.00 0.00 1.40
4375 5136 2.817844 TGCCATTGCATCTGATATCAGC 59.182 45.455 25.27 16.49 44.23 4.26
4414 5175 1.205893 GAGGTCAGTGGCCTCTAACTG 59.794 57.143 32.42 13.50 46.71 3.16
4433 5195 2.001872 TGTGCTTGCATCATCAGTACG 58.998 47.619 0.00 0.00 0.00 3.67
4448 5210 9.953697 ATCATCAGTACGTAGAAATACTTCTTC 57.046 33.333 0.00 0.00 42.17 2.87
4449 5211 9.175312 TCATCAGTACGTAGAAATACTTCTTCT 57.825 33.333 0.00 0.00 42.17 2.85
4450 5212 9.440784 CATCAGTACGTAGAAATACTTCTTCTC 57.559 37.037 0.00 0.00 42.17 2.87
4451 5213 8.789825 TCAGTACGTAGAAATACTTCTTCTCT 57.210 34.615 0.00 0.00 42.17 3.10
4452 5214 9.228949 TCAGTACGTAGAAATACTTCTTCTCTT 57.771 33.333 0.00 0.00 42.17 2.85
4463 5225 8.794335 AATACTTCTTCTCTTGGGTTTACATC 57.206 34.615 0.00 0.00 0.00 3.06
4464 5226 6.441088 ACTTCTTCTCTTGGGTTTACATCT 57.559 37.500 0.00 0.00 0.00 2.90
4465 5227 6.842676 ACTTCTTCTCTTGGGTTTACATCTT 58.157 36.000 0.00 0.00 0.00 2.40
4469 5231 4.579869 TCTCTTGGGTTTACATCTTCTGC 58.420 43.478 0.00 0.00 0.00 4.26
4471 5233 4.579869 TCTTGGGTTTACATCTTCTGCTC 58.420 43.478 0.00 0.00 0.00 4.26
4476 5238 3.620821 GGTTTACATCTTCTGCTCTGCTC 59.379 47.826 0.00 0.00 0.00 4.26
4478 5240 2.676632 ACATCTTCTGCTCTGCTCTG 57.323 50.000 0.00 0.00 0.00 3.35
4480 5242 2.302445 ACATCTTCTGCTCTGCTCTGTT 59.698 45.455 0.00 0.00 0.00 3.16
4483 5245 1.805345 CTTCTGCTCTGCTCTGTTTGG 59.195 52.381 0.00 0.00 0.00 3.28
4488 5250 1.929836 GCTCTGCTCTGTTTGGTATCG 59.070 52.381 0.00 0.00 0.00 2.92
4497 5259 5.666969 TCTGTTTGGTATCGTGTCAAAAG 57.333 39.130 0.00 0.00 33.05 2.27
4498 5260 5.120399 TCTGTTTGGTATCGTGTCAAAAGT 58.880 37.500 0.00 0.00 33.05 2.66
4499 5261 5.007234 TCTGTTTGGTATCGTGTCAAAAGTG 59.993 40.000 0.00 0.00 33.05 3.16
4500 5262 4.876679 TGTTTGGTATCGTGTCAAAAGTGA 59.123 37.500 0.00 0.00 33.05 3.41
4501 5263 5.529430 TGTTTGGTATCGTGTCAAAAGTGAT 59.471 36.000 0.00 0.00 35.80 3.06
4502 5264 6.038825 TGTTTGGTATCGTGTCAAAAGTGATT 59.961 34.615 0.00 0.00 35.80 2.57
4503 5265 6.627395 TTGGTATCGTGTCAAAAGTGATTT 57.373 33.333 0.00 0.00 35.80 2.17
4504 5266 6.627395 TGGTATCGTGTCAAAAGTGATTTT 57.373 33.333 0.00 0.00 35.80 1.82
4505 5267 6.434596 TGGTATCGTGTCAAAAGTGATTTTG 58.565 36.000 7.04 7.04 41.83 2.44
4506 5268 5.342259 GGTATCGTGTCAAAAGTGATTTTGC 59.658 40.000 8.27 5.24 40.65 3.68
4507 5269 3.701241 TCGTGTCAAAAGTGATTTTGCC 58.299 40.909 8.27 0.00 40.65 4.52
4508 5270 3.380004 TCGTGTCAAAAGTGATTTTGCCT 59.620 39.130 8.27 0.00 40.65 4.75
4518 5280 3.706086 AGTGATTTTGCCTTTGTTGAGGT 59.294 39.130 0.00 0.00 39.11 3.85
4520 5282 4.270808 GTGATTTTGCCTTTGTTGAGGTTG 59.729 41.667 0.00 0.00 39.11 3.77
4527 5289 3.320826 GCCTTTGTTGAGGTTGTGGTAAT 59.679 43.478 0.00 0.00 39.11 1.89
4534 5296 4.032960 TGAGGTTGTGGTAATTGCATCT 57.967 40.909 0.00 0.00 0.00 2.90
4551 5313 5.815581 TGCATCTTCCTTTACATACTGGTT 58.184 37.500 0.00 0.00 0.00 3.67
4560 5325 6.094881 TCCTTTACATACTGGTTTGCTAATGC 59.905 38.462 0.00 0.00 40.20 3.56
4561 5326 6.095440 CCTTTACATACTGGTTTGCTAATGCT 59.905 38.462 0.00 0.00 40.48 3.79
4581 5346 3.181520 GCTACTTACGTGCATCCACTTTG 60.182 47.826 0.00 0.00 39.86 2.77
4595 5360 5.779241 TCCACTTTGGGAATTCAGACTAT 57.221 39.130 7.93 0.00 38.32 2.12
4611 5376 7.196637 TCAGACTATGAAGTAGGAGTACTCA 57.803 40.000 23.91 1.74 38.66 3.41
4612 5377 7.807198 TCAGACTATGAAGTAGGAGTACTCAT 58.193 38.462 23.91 19.76 38.66 2.90
4613 5378 8.275758 TCAGACTATGAAGTAGGAGTACTCATT 58.724 37.037 23.91 13.77 38.66 2.57
4614 5379 8.908903 CAGACTATGAAGTAGGAGTACTCATTT 58.091 37.037 23.91 9.57 38.66 2.32
4615 5380 9.127277 AGACTATGAAGTAGGAGTACTCATTTC 57.873 37.037 23.91 17.70 38.66 2.17
4616 5381 8.824756 ACTATGAAGTAGGAGTACTCATTTCA 57.175 34.615 23.91 22.11 38.66 2.69
4617 5382 9.256228 ACTATGAAGTAGGAGTACTCATTTCAA 57.744 33.333 21.81 13.43 38.66 2.69
4618 5383 9.743057 CTATGAAGTAGGAGTACTCATTTCAAG 57.257 37.037 21.81 17.04 38.66 3.02
4619 5384 7.540474 TGAAGTAGGAGTACTCATTTCAAGT 57.460 36.000 23.91 2.48 38.66 3.16
4620 5385 8.645814 TGAAGTAGGAGTACTCATTTCAAGTA 57.354 34.615 23.91 0.00 38.66 2.24
4621 5386 8.740906 TGAAGTAGGAGTACTCATTTCAAGTAG 58.259 37.037 23.91 0.00 38.66 2.57
4622 5387 7.648039 AGTAGGAGTACTCATTTCAAGTAGG 57.352 40.000 23.91 0.00 34.00 3.18
4623 5388 7.411808 AGTAGGAGTACTCATTTCAAGTAGGA 58.588 38.462 23.91 0.00 34.00 2.94
4624 5389 6.783708 AGGAGTACTCATTTCAAGTAGGAG 57.216 41.667 23.91 0.00 30.11 3.69
4625 5390 6.257586 AGGAGTACTCATTTCAAGTAGGAGT 58.742 40.000 23.91 0.00 41.37 3.85
4667 6432 2.628657 AGTAGGAGTTCTGTTCTTGCGT 59.371 45.455 0.00 0.00 0.00 5.24
4683 6448 4.624024 TCTTGCGTCTAAAGATTACAACCG 59.376 41.667 0.00 0.00 0.00 4.44
4752 6785 8.504815 GTGAATATGTCAGAATCCAATGATGAG 58.495 37.037 0.00 0.00 36.74 2.90
4760 6793 4.882427 AGAATCCAATGATGAGCAAGTCTG 59.118 41.667 0.00 0.00 0.00 3.51
4762 6795 4.025040 TCCAATGATGAGCAAGTCTGTT 57.975 40.909 0.00 0.00 0.00 3.16
4821 6854 6.873076 TGCTTTGCAGTTTTATTTGGAATAGG 59.127 34.615 0.00 0.00 33.32 2.57
4853 6902 8.085296 TGAATCTCTAGTTTCAGACTGAGTTTC 58.915 37.037 5.10 4.37 39.28 2.78
4854 6903 7.775053 ATCTCTAGTTTCAGACTGAGTTTCT 57.225 36.000 5.10 5.81 39.48 2.52
4855 6904 7.209471 TCTCTAGTTTCAGACTGAGTTTCTC 57.791 40.000 5.10 0.00 39.48 2.87
4860 6909 7.313951 AGTTTCAGACTGAGTTTCTCTTTTG 57.686 36.000 5.10 0.00 37.17 2.44
4862 6911 6.910536 TTCAGACTGAGTTTCTCTTTTGAC 57.089 37.500 5.10 0.00 0.00 3.18
4907 6956 2.030274 ACACCCTTTTCGTATTGCTTGC 60.030 45.455 0.00 0.00 0.00 4.01
4937 6986 5.639506 AGACCTACACATTTTCAGATGTTCG 59.360 40.000 0.00 0.00 38.15 3.95
5103 7161 1.756538 CCTTCAAATCCCATTTCCCCG 59.243 52.381 0.00 0.00 0.00 5.73
5354 7421 4.436998 CTGACGAGCGTGGGGGTC 62.437 72.222 0.00 0.00 39.80 4.46
5363 7430 2.786495 CGTGGGGGTCGATCCTCTG 61.786 68.421 17.44 4.40 36.78 3.35
5379 7446 2.310538 CTCTGCTGGAACCAAGGTTTT 58.689 47.619 5.87 0.00 38.60 2.43
5397 7464 4.087892 CCGGCAGGAGTGTGGAGG 62.088 72.222 0.00 0.00 41.02 4.30
5400 7467 2.664081 GGCAGGAGTGTGGAGGGAG 61.664 68.421 0.00 0.00 0.00 4.30
5424 7491 5.867716 GGAACTCTGTCAATTCGCTTTAGTA 59.132 40.000 0.00 0.00 0.00 1.82
5425 7492 6.035112 GGAACTCTGTCAATTCGCTTTAGTAG 59.965 42.308 0.00 0.00 0.00 2.57
5426 7493 6.026947 ACTCTGTCAATTCGCTTTAGTAGT 57.973 37.500 0.00 0.00 0.00 2.73
5427 7494 6.456501 ACTCTGTCAATTCGCTTTAGTAGTT 58.543 36.000 0.00 0.00 0.00 2.24
5428 7495 6.929606 ACTCTGTCAATTCGCTTTAGTAGTTT 59.070 34.615 0.00 0.00 0.00 2.66
5429 7496 8.086522 ACTCTGTCAATTCGCTTTAGTAGTTTA 58.913 33.333 0.00 0.00 0.00 2.01
5430 7497 8.462143 TCTGTCAATTCGCTTTAGTAGTTTAG 57.538 34.615 0.00 0.00 0.00 1.85
5432 7499 6.647481 TGTCAATTCGCTTTAGTAGTTTAGCA 59.353 34.615 0.00 0.00 33.29 3.49
5433 7500 7.333423 TGTCAATTCGCTTTAGTAGTTTAGCAT 59.667 33.333 0.00 0.00 33.29 3.79
5436 7551 9.031360 CAATTCGCTTTAGTAGTTTAGCATCTA 57.969 33.333 0.00 0.00 33.29 1.98
5455 7570 0.955178 ACTCGTCAGTCAGGTCTGTG 59.045 55.000 0.00 0.00 36.85 3.66
5513 7628 3.720949 ACTTTGCGTAGTACAGTGTCA 57.279 42.857 0.00 0.00 0.00 3.58
5556 7671 3.451178 AGAGGTGTATGTAAGGCGAATGT 59.549 43.478 0.00 0.00 0.00 2.71
5557 7672 3.531538 AGGTGTATGTAAGGCGAATGTG 58.468 45.455 0.00 0.00 0.00 3.21
5558 7673 2.031683 GGTGTATGTAAGGCGAATGTGC 59.968 50.000 0.00 0.00 0.00 4.57
5594 7709 8.231837 CCTGAGATTAATTGGCAATTTTGTTTG 58.768 33.333 28.56 14.12 32.38 2.93
5615 7730 3.054582 TGCTGCTTCTTCCAAGATCTGAT 60.055 43.478 0.00 0.00 34.49 2.90
5620 7735 4.813697 GCTTCTTCCAAGATCTGATGGTAC 59.186 45.833 12.27 0.00 37.94 3.34
5628 7743 4.207891 AGATCTGATGGTACGCAACTTT 57.792 40.909 0.00 0.00 0.00 2.66
5630 7745 4.393062 AGATCTGATGGTACGCAACTTTTG 59.607 41.667 0.00 0.00 0.00 2.44
5658 7773 3.681897 AGAATCATGTCTTGCACGAGAAC 59.318 43.478 0.00 0.00 0.00 3.01
5695 7810 6.800543 TCATCTAGAGTGATGAACTACAAGC 58.199 40.000 0.00 0.00 46.60 4.01
5734 7849 3.768406 TGCTTTGTTGGCGCTAAATATG 58.232 40.909 8.12 2.93 0.00 1.78
5735 7850 2.535574 GCTTTGTTGGCGCTAAATATGC 59.464 45.455 8.12 9.21 0.00 3.14
5978 8096 0.827368 CCCTCTTCTTTCCTCCTCCG 59.173 60.000 0.00 0.00 0.00 4.63
5979 8097 0.176910 CCTCTTCTTTCCTCCTCCGC 59.823 60.000 0.00 0.00 0.00 5.54
5980 8098 0.176910 CTCTTCTTTCCTCCTCCGCC 59.823 60.000 0.00 0.00 0.00 6.13
6053 8171 2.134933 GGAGGGTCTTCGCCTAGGG 61.135 68.421 11.72 0.44 0.00 3.53
6171 8296 2.428890 GAGTACTGGAGGTGTGATCAGG 59.571 54.545 0.00 0.00 0.00 3.86
6173 8298 0.178891 ACTGGAGGTGTGATCAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
6174 8299 1.078823 ACTGGAGGTGTGATCAGGGTA 59.921 52.381 0.00 0.00 0.00 3.69
6175 8300 2.293184 ACTGGAGGTGTGATCAGGGTAT 60.293 50.000 0.00 0.00 0.00 2.73
6176 8301 2.103771 CTGGAGGTGTGATCAGGGTATG 59.896 54.545 0.00 0.00 0.00 2.39
6177 8302 1.417890 GGAGGTGTGATCAGGGTATGG 59.582 57.143 0.00 0.00 0.00 2.74
6258 8388 2.057922 AGGGAAGACAGTGACAACCAT 58.942 47.619 0.00 0.00 0.00 3.55
6314 8444 2.158900 GCCCAAGCAAGCTCATACTCTA 60.159 50.000 0.00 0.00 39.53 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.040692 CCAATCTTGCATGATCCGCG 60.041 55.000 14.85 0.00 0.00 6.46
11 12 0.313043 CCCAATCTTGCATGATCCGC 59.687 55.000 14.85 0.00 0.00 5.54
12 13 0.956633 CCCCAATCTTGCATGATCCG 59.043 55.000 14.85 9.55 0.00 4.18
29 30 0.751452 GTCTCACGGAATAGGGTCCC 59.249 60.000 0.00 0.00 33.74 4.46
56 57 5.647658 ACTCAATGAAATCCATACGAAGCAA 59.352 36.000 0.00 0.00 34.45 3.91
68 69 8.871686 AAAACAACCTTGTACTCAATGAAATC 57.128 30.769 0.00 0.00 41.31 2.17
69 70 9.313118 GAAAAACAACCTTGTACTCAATGAAAT 57.687 29.630 0.00 0.00 41.31 2.17
73 74 7.382218 GGATGAAAAACAACCTTGTACTCAATG 59.618 37.037 0.00 0.00 41.31 2.82
121 122 1.754380 TACGACCAGCAAGCAGGTGT 61.754 55.000 14.13 13.49 44.16 4.16
125 126 0.319900 ACACTACGACCAGCAAGCAG 60.320 55.000 0.00 0.00 0.00 4.24
149 150 0.323629 CGGTGGCTTCCTGGTTCTAA 59.676 55.000 0.00 0.00 0.00 2.10
164 165 1.648720 CTGTGAGCCAAACACGGTG 59.351 57.895 6.58 6.58 40.61 4.94
181 182 1.065126 GTTACATCAGAGGGCAAGCCT 60.065 52.381 11.40 0.00 36.10 4.58
182 183 1.340017 TGTTACATCAGAGGGCAAGCC 60.340 52.381 1.52 1.52 0.00 4.35
191 192 3.738982 CCACAACACCTGTTACATCAGA 58.261 45.455 0.00 0.00 35.47 3.27
201 202 3.345808 CGACGGCCACAACACCTG 61.346 66.667 2.24 0.00 0.00 4.00
202 203 2.391724 AATCGACGGCCACAACACCT 62.392 55.000 2.24 0.00 0.00 4.00
226 227 1.040646 TCCATTAGCTAGTGGGCTCG 58.959 55.000 29.11 8.84 42.97 5.03
242 243 2.158400 TGGAACAACACCATCCATTCCA 60.158 45.455 0.00 0.00 42.48 3.53
249 250 1.588674 TGACGTGGAACAACACCATC 58.411 50.000 0.00 0.00 44.16 3.51
256 257 7.884816 TTTATTTGTTTTTGACGTGGAACAA 57.115 28.000 0.00 1.88 44.16 2.83
258 259 8.384365 ACATTTTATTTGTTTTTGACGTGGAAC 58.616 29.630 0.00 0.00 0.00 3.62
277 278 9.013229 AGCTTGTTGAAGTATCATCACATTTTA 57.987 29.630 0.00 0.00 35.53 1.52
345 346 4.278170 TGACTTGAAGAAATTCCGTTGCAT 59.722 37.500 0.00 0.00 0.00 3.96
360 361 5.012664 TGAGGCTATTGGTACTTGACTTGAA 59.987 40.000 0.00 0.00 0.00 2.69
361 362 4.530553 TGAGGCTATTGGTACTTGACTTGA 59.469 41.667 0.00 0.00 0.00 3.02
362 363 4.832248 TGAGGCTATTGGTACTTGACTTG 58.168 43.478 0.00 0.00 0.00 3.16
363 364 5.045578 ACATGAGGCTATTGGTACTTGACTT 60.046 40.000 0.00 0.00 0.00 3.01
364 365 4.471386 ACATGAGGCTATTGGTACTTGACT 59.529 41.667 0.00 0.00 0.00 3.41
365 366 4.770795 ACATGAGGCTATTGGTACTTGAC 58.229 43.478 0.00 0.00 0.00 3.18
522 533 1.718757 GCGTTGCAGGGATGGACATC 61.719 60.000 3.72 3.72 37.11 3.06
533 558 1.280746 CTGACTGTTGGCGTTGCAG 59.719 57.895 0.00 0.00 36.41 4.41
534 559 1.436195 GACTGACTGTTGGCGTTGCA 61.436 55.000 0.00 0.00 0.00 4.08
535 560 1.279840 GACTGACTGTTGGCGTTGC 59.720 57.895 0.00 0.00 0.00 4.17
537 562 0.814010 GGTGACTGACTGTTGGCGTT 60.814 55.000 0.00 0.00 0.00 4.84
539 564 1.961277 GGGTGACTGACTGTTGGCG 60.961 63.158 0.00 0.00 0.00 5.69
624 653 0.670162 CTGGACTGCTTGGTTGGTTG 59.330 55.000 0.00 0.00 0.00 3.77
625 654 0.258774 ACTGGACTGCTTGGTTGGTT 59.741 50.000 0.00 0.00 0.00 3.67
626 655 0.179018 GACTGGACTGCTTGGTTGGT 60.179 55.000 0.00 0.00 0.00 3.67
627 656 0.179020 TGACTGGACTGCTTGGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
792 827 0.908180 GTCGGAGGAGGGAAAAGGGA 60.908 60.000 0.00 0.00 0.00 4.20
800 841 4.452733 GCGTTGGTCGGAGGAGGG 62.453 72.222 0.00 0.00 40.26 4.30
869 910 2.515523 CTGCTTGCCTCGATGGGG 60.516 66.667 3.56 0.00 36.00 4.96
994 1035 4.847516 CCGCGCGGACATCGAAGA 62.848 66.667 44.86 0.00 42.43 2.87
1262 1315 1.621672 CCACTTCTCCTCCTGCTCCC 61.622 65.000 0.00 0.00 0.00 4.30
1479 1532 1.913317 TCATCAATCACTCTGACGCG 58.087 50.000 3.53 3.53 0.00 6.01
1483 1536 3.776417 TCCACCATCATCAATCACTCTGA 59.224 43.478 0.00 0.00 0.00 3.27
1532 1585 2.107031 TCCCCTGTTGCATCATCCATAG 59.893 50.000 0.00 0.00 0.00 2.23
1755 1808 4.457496 CGTCGGCTGGTGGCATCT 62.457 66.667 0.00 0.00 44.01 2.90
1782 1835 2.028876 TCTCGCGGATGTCCTTGATAA 58.971 47.619 6.13 0.00 0.00 1.75
1896 1949 1.809619 TTATCTGCACTGGACGCGC 60.810 57.895 5.73 0.00 0.00 6.86
1935 1989 5.237779 CACAAGTTCACCACGGTTATTAAGT 59.762 40.000 0.00 0.00 0.00 2.24
2035 2089 0.348370 ATCCCCTCCATCTTCACCCT 59.652 55.000 0.00 0.00 0.00 4.34
2142 2196 3.880846 CGGCTGCCGCATTTCCTC 61.881 66.667 29.58 0.00 41.17 3.71
2361 2415 0.114364 TGGACTAGTGGAGCACTGGA 59.886 55.000 0.00 0.00 44.01 3.86
2377 2431 7.811282 TGGGATAATAAGATAAGCAAAGTGGA 58.189 34.615 0.00 0.00 0.00 4.02
2410 2464 4.927425 CGAGACTAATCTTGTTTCCGGAAA 59.073 41.667 25.67 25.67 34.34 3.13
2412 2466 3.119245 CCGAGACTAATCTTGTTTCCGGA 60.119 47.826 0.00 0.00 34.81 5.14
2416 2470 4.246458 AGTGCCGAGACTAATCTTGTTTC 58.754 43.478 0.00 0.00 34.81 2.78
2419 2473 3.963428 AAGTGCCGAGACTAATCTTGT 57.037 42.857 0.00 0.00 34.81 3.16
2430 2484 1.933853 GGTAGCATGTTAAGTGCCGAG 59.066 52.381 8.69 0.00 43.50 4.63
2433 2487 1.396996 CACGGTAGCATGTTAAGTGCC 59.603 52.381 11.48 0.23 43.50 5.01
2436 2490 3.412237 AACCACGGTAGCATGTTAAGT 57.588 42.857 0.00 0.00 0.00 2.24
2469 2532 0.365523 CCACGACTAATCACGCAACG 59.634 55.000 0.00 0.00 0.00 4.10
2489 2552 0.677288 AGTCAACGACATTCGGGTGA 59.323 50.000 0.03 0.84 45.59 4.02
2552 2615 3.501062 CCCAATCTGATCGTGGATTCATG 59.499 47.826 9.47 0.00 34.05 3.07
2588 2651 1.067846 GCCATTTCAAAACTCCCGGAC 60.068 52.381 0.73 0.00 0.00 4.79
2663 2727 1.678635 ATGCCATCCCCACAACACG 60.679 57.895 0.00 0.00 0.00 4.49
2666 2730 1.102978 GTACATGCCATCCCCACAAC 58.897 55.000 0.00 0.00 0.00 3.32
2724 2803 0.391263 GTGGACCCGGTTGATCAGAC 60.391 60.000 0.00 0.00 0.00 3.51
2798 2880 2.673368 CCATTAACCTCTCGTGTTGCTC 59.327 50.000 0.00 0.00 0.00 4.26
2926 3008 1.540267 GAAGAAAAGAAGAACGGCCCC 59.460 52.381 0.00 0.00 0.00 5.80
2932 3015 5.760743 AGCTACTGTGGAAGAAAAGAAGAAC 59.239 40.000 0.00 0.00 0.00 3.01
2939 3022 4.537135 ATCGAGCTACTGTGGAAGAAAA 57.463 40.909 0.00 0.00 0.00 2.29
2951 3034 6.128849 GCTAGTGTGTAGTAGTATCGAGCTAC 60.129 46.154 17.28 17.28 39.14 3.58
2964 3047 6.003859 AGTAGTATGGAGCTAGTGTGTAGT 57.996 41.667 0.00 0.00 0.00 2.73
2965 3048 7.218614 AGTAGTAGTATGGAGCTAGTGTGTAG 58.781 42.308 0.00 0.00 0.00 2.74
2966 3049 7.134362 AGTAGTAGTATGGAGCTAGTGTGTA 57.866 40.000 0.00 0.00 0.00 2.90
2967 3050 6.003859 AGTAGTAGTATGGAGCTAGTGTGT 57.996 41.667 0.00 0.00 0.00 3.72
2968 3051 5.177881 CGAGTAGTAGTATGGAGCTAGTGTG 59.822 48.000 0.00 0.00 0.00 3.82
2969 3052 5.163322 ACGAGTAGTAGTATGGAGCTAGTGT 60.163 44.000 0.00 0.00 0.00 3.55
2970 3053 5.299148 ACGAGTAGTAGTATGGAGCTAGTG 58.701 45.833 0.00 0.00 0.00 2.74
2971 3054 5.549742 ACGAGTAGTAGTATGGAGCTAGT 57.450 43.478 0.00 0.00 0.00 2.57
2984 3067 1.871080 GCCTACGGCTACGAGTAGTA 58.129 55.000 11.39 0.00 46.69 1.82
2985 3068 2.700329 GCCTACGGCTACGAGTAGT 58.300 57.895 11.39 0.00 46.69 2.73
3035 3118 4.275689 TGACGGGTTCAAATCATATCATGC 59.724 41.667 0.00 0.00 0.00 4.06
3073 3156 1.543208 GCACTGACTGACAATGTGGGA 60.543 52.381 0.00 0.00 0.00 4.37
3080 3163 0.815213 GCACTGGCACTGACTGACAA 60.815 55.000 0.00 0.00 37.50 3.18
3239 3322 8.991026 CCTGCAATGATTTAAAATTGACAGAAA 58.009 29.630 22.31 4.88 38.62 2.52
3240 3323 8.149647 ACCTGCAATGATTTAAAATTGACAGAA 58.850 29.630 22.31 5.94 38.62 3.02
3289 3940 4.250116 ACACAGCTCACAGAACTAGAAG 57.750 45.455 0.00 0.00 0.00 2.85
3359 4013 8.679100 ACTAGTAAATGCTCAGAACTACTACTG 58.321 37.037 0.00 0.00 35.72 2.74
3416 4080 9.549984 AGTATTTCTTTAGAGAGGGAGTACTTT 57.450 33.333 0.00 0.00 32.44 2.66
3439 4103 9.696572 AGTGGTGATCTAAACACTCTTATAGTA 57.303 33.333 0.00 0.00 39.84 1.82
3440 4104 8.596781 AGTGGTGATCTAAACACTCTTATAGT 57.403 34.615 0.00 0.00 39.84 2.12
3441 4105 9.877178 AAAGTGGTGATCTAAACACTCTTATAG 57.123 33.333 4.34 0.00 42.85 1.31
3443 4107 9.877178 CTAAAGTGGTGATCTAAACACTCTTAT 57.123 33.333 4.34 0.00 42.85 1.73
3444 4108 8.867097 ACTAAAGTGGTGATCTAAACACTCTTA 58.133 33.333 4.34 5.45 42.85 2.10
3445 4109 7.736893 ACTAAAGTGGTGATCTAAACACTCTT 58.263 34.615 4.34 4.73 42.85 2.85
3446 4110 7.304497 ACTAAAGTGGTGATCTAAACACTCT 57.696 36.000 4.34 0.00 42.85 3.24
3447 4111 9.654663 ATTACTAAAGTGGTGATCTAAACACTC 57.345 33.333 4.34 0.00 42.85 3.51
3448 4112 9.436957 CATTACTAAAGTGGTGATCTAAACACT 57.563 33.333 0.00 0.00 45.34 3.55
3449 4113 9.216117 ACATTACTAAAGTGGTGATCTAAACAC 57.784 33.333 0.00 0.00 37.51 3.32
3455 4119 9.216117 GTGTTTACATTACTAAAGTGGTGATCT 57.784 33.333 0.00 0.00 0.00 2.75
3456 4120 9.216117 AGTGTTTACATTACTAAAGTGGTGATC 57.784 33.333 0.00 0.00 0.00 2.92
3457 4121 9.569122 AAGTGTTTACATTACTAAAGTGGTGAT 57.431 29.630 0.00 0.00 0.00 3.06
3458 4122 8.967664 AAGTGTTTACATTACTAAAGTGGTGA 57.032 30.769 0.00 0.00 0.00 4.02
3475 4139 9.757859 CCGCGTTAAGAAATATAAAAGTGTTTA 57.242 29.630 4.92 0.00 33.76 2.01
3476 4140 7.751793 CCCGCGTTAAGAAATATAAAAGTGTTT 59.248 33.333 4.92 0.00 0.00 2.83
3477 4141 7.245604 CCCGCGTTAAGAAATATAAAAGTGTT 58.754 34.615 4.92 0.00 0.00 3.32
3478 4142 6.183360 CCCCGCGTTAAGAAATATAAAAGTGT 60.183 38.462 4.92 0.00 0.00 3.55
3479 4143 6.037391 TCCCCGCGTTAAGAAATATAAAAGTG 59.963 38.462 4.92 0.00 0.00 3.16
3480 4144 6.114767 TCCCCGCGTTAAGAAATATAAAAGT 58.885 36.000 4.92 0.00 0.00 2.66
3481 4145 6.259387 ACTCCCCGCGTTAAGAAATATAAAAG 59.741 38.462 4.92 0.00 0.00 2.27
3482 4146 6.114767 ACTCCCCGCGTTAAGAAATATAAAA 58.885 36.000 4.92 0.00 0.00 1.52
3483 4147 5.673514 ACTCCCCGCGTTAAGAAATATAAA 58.326 37.500 4.92 0.00 0.00 1.40
3484 4148 5.280654 ACTCCCCGCGTTAAGAAATATAA 57.719 39.130 4.92 0.00 0.00 0.98
3485 4149 4.942761 ACTCCCCGCGTTAAGAAATATA 57.057 40.909 4.92 0.00 0.00 0.86
3486 4150 3.832615 ACTCCCCGCGTTAAGAAATAT 57.167 42.857 4.92 0.00 0.00 1.28
3487 4151 3.446873 TGTACTCCCCGCGTTAAGAAATA 59.553 43.478 4.92 0.00 0.00 1.40
3488 4152 2.234414 TGTACTCCCCGCGTTAAGAAAT 59.766 45.455 4.92 0.00 0.00 2.17
3489 4153 1.617850 TGTACTCCCCGCGTTAAGAAA 59.382 47.619 4.92 0.00 0.00 2.52
3490 4154 1.255882 TGTACTCCCCGCGTTAAGAA 58.744 50.000 4.92 0.00 0.00 2.52
3491 4155 1.203052 CTTGTACTCCCCGCGTTAAGA 59.797 52.381 4.92 0.00 0.00 2.10
3492 4156 1.636988 CTTGTACTCCCCGCGTTAAG 58.363 55.000 4.92 0.87 0.00 1.85
3493 4157 0.390209 GCTTGTACTCCCCGCGTTAA 60.390 55.000 4.92 0.00 0.00 2.01
3494 4158 1.216178 GCTTGTACTCCCCGCGTTA 59.784 57.895 4.92 0.00 0.00 3.18
3495 4159 2.047560 GCTTGTACTCCCCGCGTT 60.048 61.111 4.92 0.00 0.00 4.84
3496 4160 4.078516 GGCTTGTACTCCCCGCGT 62.079 66.667 4.92 0.00 0.00 6.01
3497 4161 4.077184 TGGCTTGTACTCCCCGCG 62.077 66.667 0.00 0.00 0.00 6.46
3498 4162 2.436115 GTGGCTTGTACTCCCCGC 60.436 66.667 0.00 0.00 0.00 6.13
3499 4163 0.036306 AAAGTGGCTTGTACTCCCCG 59.964 55.000 0.00 0.00 0.00 5.73
3500 4164 1.073284 TCAAAGTGGCTTGTACTCCCC 59.927 52.381 0.00 0.00 0.00 4.81
3501 4165 2.561478 TCAAAGTGGCTTGTACTCCC 57.439 50.000 0.00 0.00 0.00 4.30
3502 4166 2.162408 GCATCAAAGTGGCTTGTACTCC 59.838 50.000 0.00 0.00 0.00 3.85
3503 4167 3.077359 AGCATCAAAGTGGCTTGTACTC 58.923 45.455 0.00 0.00 33.21 2.59
3504 4168 2.816087 CAGCATCAAAGTGGCTTGTACT 59.184 45.455 0.00 0.00 35.27 2.73
3505 4169 2.813754 TCAGCATCAAAGTGGCTTGTAC 59.186 45.455 0.00 0.00 35.27 2.90
3506 4170 3.138884 TCAGCATCAAAGTGGCTTGTA 57.861 42.857 0.00 0.00 35.27 2.41
3507 4171 1.985473 TCAGCATCAAAGTGGCTTGT 58.015 45.000 0.00 0.00 35.27 3.16
3520 4184 3.402110 TCAGAACGTCACATTTCAGCAT 58.598 40.909 0.00 0.00 0.00 3.79
3648 4334 3.721575 TGGCCCAGATACATCATAAACCT 59.278 43.478 0.00 0.00 0.00 3.50
3718 4404 3.471680 CATAAGACAGGAAAGGCTAGCC 58.528 50.000 27.19 27.19 0.00 3.93
3814 4500 2.680841 GTGGCACAATAGTTATTGCGGA 59.319 45.455 13.86 0.00 45.24 5.54
3841 4532 2.277969 CGCACTTGAGCAGATCAGATT 58.722 47.619 0.00 0.00 39.68 2.40
3870 4561 6.529829 TCAACAAATAAGTTTTGACAGTGCAC 59.470 34.615 9.40 9.40 33.83 4.57
3898 4590 4.988540 GGGTTGCCAATTCAAACTAACTTC 59.011 41.667 0.00 0.00 34.25 3.01
3929 4655 3.057104 TGTGAATGCAATGCCTCTTCAAG 60.057 43.478 13.80 0.00 0.00 3.02
3976 4702 7.237471 TGAAAGCCTATTATGGTGGATATCTCA 59.763 37.037 2.05 0.00 0.00 3.27
4020 4746 1.047002 CAACCAAATCCAGCAACCCA 58.953 50.000 0.00 0.00 0.00 4.51
4024 4750 2.382882 TGTGTCAACCAAATCCAGCAA 58.617 42.857 0.00 0.00 0.00 3.91
4099 4825 5.565455 ATTTTCTTTCATCTTTGGGCCAA 57.435 34.783 16.66 16.66 0.00 4.52
4123 4883 6.043411 GCAGGACATAATTTAACTCGACTCT 58.957 40.000 0.00 0.00 0.00 3.24
4156 4917 1.404391 GCCACAATCTGCATGGAGAAG 59.596 52.381 21.52 17.94 35.33 2.85
4328 5089 0.183492 TGCCATGTATCCCTGGAAGC 59.817 55.000 0.00 0.00 34.24 3.86
4363 5124 3.979347 AGGAACCAAGGCTGATATCAGAT 59.021 43.478 32.38 18.65 46.59 2.90
4369 5130 4.591321 ATTCAAGGAACCAAGGCTGATA 57.409 40.909 0.00 0.00 0.00 2.15
4375 5136 3.760684 CCTCAGAATTCAAGGAACCAAGG 59.239 47.826 17.76 4.53 31.44 3.61
4412 5173 2.030091 CGTACTGATGATGCAAGCACAG 59.970 50.000 0.00 2.86 30.93 3.66
4414 5175 2.002586 ACGTACTGATGATGCAAGCAC 58.997 47.619 0.00 0.00 30.93 4.40
4433 5195 8.850007 AAACCCAAGAGAAGAAGTATTTCTAC 57.150 34.615 0.32 0.00 42.80 2.59
4448 5210 4.583871 AGCAGAAGATGTAAACCCAAGAG 58.416 43.478 0.00 0.00 0.00 2.85
4449 5211 4.287067 AGAGCAGAAGATGTAAACCCAAGA 59.713 41.667 0.00 0.00 0.00 3.02
4450 5212 4.394300 CAGAGCAGAAGATGTAAACCCAAG 59.606 45.833 0.00 0.00 0.00 3.61
4451 5213 4.326826 CAGAGCAGAAGATGTAAACCCAA 58.673 43.478 0.00 0.00 0.00 4.12
4452 5214 3.869912 GCAGAGCAGAAGATGTAAACCCA 60.870 47.826 0.00 0.00 0.00 4.51
4463 5225 1.805345 CCAAACAGAGCAGAGCAGAAG 59.195 52.381 0.00 0.00 0.00 2.85
4464 5226 1.141657 ACCAAACAGAGCAGAGCAGAA 59.858 47.619 0.00 0.00 0.00 3.02
4465 5227 0.761187 ACCAAACAGAGCAGAGCAGA 59.239 50.000 0.00 0.00 0.00 4.26
4469 5231 2.926200 CACGATACCAAACAGAGCAGAG 59.074 50.000 0.00 0.00 0.00 3.35
4471 5233 2.668457 GACACGATACCAAACAGAGCAG 59.332 50.000 0.00 0.00 0.00 4.24
4476 5238 5.007234 TCACTTTTGACACGATACCAAACAG 59.993 40.000 0.00 0.00 30.55 3.16
4478 5240 5.412526 TCACTTTTGACACGATACCAAAC 57.587 39.130 0.00 0.00 30.55 2.93
4480 5242 6.627395 AAATCACTTTTGACACGATACCAA 57.373 33.333 0.00 0.00 33.38 3.67
4497 5259 4.058721 ACCTCAACAAAGGCAAAATCAC 57.941 40.909 0.00 0.00 40.34 3.06
4498 5260 4.081198 ACAACCTCAACAAAGGCAAAATCA 60.081 37.500 0.00 0.00 40.34 2.57
4499 5261 4.270808 CACAACCTCAACAAAGGCAAAATC 59.729 41.667 0.00 0.00 40.34 2.17
4500 5262 4.190772 CACAACCTCAACAAAGGCAAAAT 58.809 39.130 0.00 0.00 40.34 1.82
4501 5263 3.594134 CACAACCTCAACAAAGGCAAAA 58.406 40.909 0.00 0.00 40.34 2.44
4502 5264 2.093764 CCACAACCTCAACAAAGGCAAA 60.094 45.455 0.00 0.00 40.34 3.68
4503 5265 1.480137 CCACAACCTCAACAAAGGCAA 59.520 47.619 0.00 0.00 40.34 4.52
4504 5266 1.110442 CCACAACCTCAACAAAGGCA 58.890 50.000 0.00 0.00 40.34 4.75
4505 5267 1.111277 ACCACAACCTCAACAAAGGC 58.889 50.000 0.00 0.00 40.34 4.35
4506 5268 5.288804 CAATTACCACAACCTCAACAAAGG 58.711 41.667 0.00 0.00 42.55 3.11
4507 5269 4.744631 GCAATTACCACAACCTCAACAAAG 59.255 41.667 0.00 0.00 0.00 2.77
4508 5270 4.160439 TGCAATTACCACAACCTCAACAAA 59.840 37.500 0.00 0.00 0.00 2.83
4518 5280 6.491745 TGTAAAGGAAGATGCAATTACCACAA 59.508 34.615 0.00 0.00 0.00 3.33
4520 5282 6.509418 TGTAAAGGAAGATGCAATTACCAC 57.491 37.500 0.00 0.00 0.00 4.16
4527 5289 5.815581 ACCAGTATGTAAAGGAAGATGCAA 58.184 37.500 0.00 0.00 0.00 4.08
4534 5296 7.362574 GCATTAGCAAACCAGTATGTAAAGGAA 60.363 37.037 0.00 0.00 41.58 3.36
4560 5325 3.370978 CCAAAGTGGATGCACGTAAGTAG 59.629 47.826 12.02 0.00 46.77 2.57
4561 5326 3.331150 CCAAAGTGGATGCACGTAAGTA 58.669 45.455 12.02 0.00 46.77 2.24
4581 5346 6.325286 ACTCCTACTTCATAGTCTGAATTCCC 59.675 42.308 2.27 0.00 42.87 3.97
4595 5360 7.540474 ACTTGAAATGAGTACTCCTACTTCA 57.460 36.000 20.11 17.66 32.96 3.02
4602 5367 6.532988 ACTCCTACTTGAAATGAGTACTCC 57.467 41.667 20.11 5.22 34.68 3.85
4607 5372 8.429641 TCTTTTGTACTCCTACTTGAAATGAGT 58.570 33.333 0.00 0.00 39.47 3.41
4608 5373 8.833231 TCTTTTGTACTCCTACTTGAAATGAG 57.167 34.615 0.00 0.00 0.00 2.90
4609 5374 8.429641 ACTCTTTTGTACTCCTACTTGAAATGA 58.570 33.333 0.00 0.00 0.00 2.57
4611 5376 9.708092 GTACTCTTTTGTACTCCTACTTGAAAT 57.292 33.333 0.00 0.00 39.55 2.17
4625 5390 9.706691 CCTACTTGAAATGAGTACTCTTTTGTA 57.293 33.333 30.70 24.69 37.17 2.41
4667 6432 8.842358 AAGAAATCACGGTTGTAATCTTTAGA 57.158 30.769 0.00 0.00 0.00 2.10
4770 6803 6.756542 GTGTGTCTGAACATGCACTGTATATA 59.243 38.462 0.00 0.00 36.98 0.86
4771 6804 5.582269 GTGTGTCTGAACATGCACTGTATAT 59.418 40.000 0.00 0.00 36.98 0.86
4819 6852 4.080695 TGAAACTAGAGATTCATGCAGCCT 60.081 41.667 0.00 0.00 32.92 4.58
4821 6854 5.006552 GTCTGAAACTAGAGATTCATGCAGC 59.993 44.000 0.00 0.00 36.48 5.25
4860 6909 7.754924 TGTTCAACTCATTCTGAAACTTTTGTC 59.245 33.333 0.00 0.00 33.52 3.18
4862 6911 7.541783 TGTGTTCAACTCATTCTGAAACTTTTG 59.458 33.333 0.00 0.00 33.52 2.44
4907 6956 4.503910 TGAAAATGTGTAGGTCTGGATCG 58.496 43.478 0.00 0.00 0.00 3.69
4937 6986 5.505173 AACAACATCACTGGCTATAATGC 57.495 39.130 0.00 0.00 0.00 3.56
5192 7259 4.717313 TCCTGCTGCTGCTGCTGG 62.717 66.667 35.27 35.27 44.29 4.85
5342 7409 4.222847 GGATCGACCCCCACGCTC 62.223 72.222 0.00 0.00 0.00 5.03
5343 7410 4.779733 AGGATCGACCCCCACGCT 62.780 66.667 0.00 0.00 40.05 5.07
5344 7411 4.222847 GAGGATCGACCCCCACGC 62.223 72.222 0.00 0.00 40.05 5.34
5345 7412 2.442272 AGAGGATCGACCCCCACG 60.442 66.667 0.00 0.00 42.67 4.94
5346 7413 3.095347 GCAGAGGATCGACCCCCAC 62.095 68.421 0.00 0.00 42.67 4.61
5347 7414 2.764128 GCAGAGGATCGACCCCCA 60.764 66.667 0.00 0.00 42.67 4.96
5348 7415 2.444895 AGCAGAGGATCGACCCCC 60.445 66.667 0.00 0.00 42.67 5.40
5349 7416 2.801631 CCAGCAGAGGATCGACCCC 61.802 68.421 0.00 0.00 42.67 4.95
5350 7417 1.330655 TTCCAGCAGAGGATCGACCC 61.331 60.000 0.00 0.00 42.67 4.46
5351 7418 0.179097 GTTCCAGCAGAGGATCGACC 60.179 60.000 0.00 0.00 42.67 4.79
5352 7419 0.179097 GGTTCCAGCAGAGGATCGAC 60.179 60.000 0.00 0.00 42.67 4.20
5353 7420 0.614697 TGGTTCCAGCAGAGGATCGA 60.615 55.000 0.00 0.00 42.67 3.59
5354 7421 0.250234 TTGGTTCCAGCAGAGGATCG 59.750 55.000 0.00 0.00 42.67 3.69
5355 7422 1.407989 CCTTGGTTCCAGCAGAGGATC 60.408 57.143 2.12 0.00 37.56 3.36
5363 7430 0.313987 CGGAAAACCTTGGTTCCAGC 59.686 55.000 5.43 0.00 43.02 4.85
5379 7446 2.997315 CTCCACACTCCTGCCGGA 60.997 66.667 5.05 0.00 37.82 5.14
5392 7459 0.487325 TGACAGAGTTCCTCCCTCCA 59.513 55.000 0.00 0.00 0.00 3.86
5397 7464 2.003301 GCGAATTGACAGAGTTCCTCC 58.997 52.381 0.00 0.00 0.00 4.30
5400 7467 4.691216 ACTAAAGCGAATTGACAGAGTTCC 59.309 41.667 0.00 0.00 0.00 3.62
5412 7479 8.414778 AGTAGATGCTAAACTACTAAAGCGAAT 58.585 33.333 0.00 0.00 44.66 3.34
5415 7482 6.357503 CGAGTAGATGCTAAACTACTAAAGCG 59.642 42.308 0.00 0.00 45.89 4.68
5416 7483 7.194962 ACGAGTAGATGCTAAACTACTAAAGC 58.805 38.462 0.00 0.00 45.89 3.51
5417 7484 8.396390 TGACGAGTAGATGCTAAACTACTAAAG 58.604 37.037 0.00 0.00 45.89 1.85
5424 7491 4.700692 TGACTGACGAGTAGATGCTAAACT 59.299 41.667 0.00 0.00 30.16 2.66
5425 7492 4.982999 TGACTGACGAGTAGATGCTAAAC 58.017 43.478 0.00 0.00 30.16 2.01
5426 7493 4.096532 CCTGACTGACGAGTAGATGCTAAA 59.903 45.833 0.00 0.00 30.16 1.85
5427 7494 3.628032 CCTGACTGACGAGTAGATGCTAA 59.372 47.826 0.00 0.00 30.16 3.09
5428 7495 3.206964 CCTGACTGACGAGTAGATGCTA 58.793 50.000 0.00 0.00 30.16 3.49
5429 7496 2.020720 CCTGACTGACGAGTAGATGCT 58.979 52.381 0.00 0.00 30.16 3.79
5430 7497 1.746220 ACCTGACTGACGAGTAGATGC 59.254 52.381 0.00 0.00 30.16 3.91
5432 7499 3.275143 CAGACCTGACTGACGAGTAGAT 58.725 50.000 0.00 0.00 39.94 1.98
5433 7500 2.038689 ACAGACCTGACTGACGAGTAGA 59.961 50.000 3.76 0.00 40.63 2.59
5436 7551 0.955178 CACAGACCTGACTGACGAGT 59.045 55.000 3.76 0.00 40.63 4.18
5513 7628 0.753262 ACTGATCGCGCCTATTCCTT 59.247 50.000 0.00 0.00 0.00 3.36
5594 7709 2.983229 TCAGATCTTGGAAGAAGCAGC 58.017 47.619 0.00 0.00 38.77 5.25
5615 7730 3.271729 TGAGTTCAAAAGTTGCGTACCA 58.728 40.909 0.00 0.00 0.00 3.25
5620 7735 4.847633 TGATTCTGAGTTCAAAAGTTGCG 58.152 39.130 0.00 0.00 0.00 4.85
5628 7743 5.049198 GTGCAAGACATGATTCTGAGTTCAA 60.049 40.000 0.00 0.00 0.00 2.69
5630 7745 4.435253 CGTGCAAGACATGATTCTGAGTTC 60.435 45.833 0.00 0.00 37.49 3.01
5734 7849 6.309251 GCTCAAATTCCTAGATGTATAGTCGC 59.691 42.308 0.00 0.00 0.00 5.19
5735 7850 7.598278 AGCTCAAATTCCTAGATGTATAGTCG 58.402 38.462 0.00 0.00 0.00 4.18
5946 8061 4.394712 GAGGGCGTGGTGGGTGAG 62.395 72.222 0.00 0.00 0.00 3.51
6171 8296 5.099042 AGAACTCCACATAACACCATACC 57.901 43.478 0.00 0.00 0.00 2.73
6258 8388 1.535028 CTTGCCGCTAAATGACACACA 59.465 47.619 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.