Multiple sequence alignment - TraesCS4D01G243300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G243300 | chr4D | 100.000 | 5493 | 0 | 0 | 994 | 6486 | 405783362 | 405777870 | 0.000000e+00 | 10144 |
1 | TraesCS4D01G243300 | chr4D | 100.000 | 536 | 0 | 0 | 1 | 536 | 405784355 | 405783820 | 0.000000e+00 | 990 |
2 | TraesCS4D01G243300 | chr4D | 97.758 | 223 | 4 | 1 | 6168 | 6389 | 258173152 | 258172930 | 3.670000e-102 | 383 |
3 | TraesCS4D01G243300 | chr4D | 94.554 | 202 | 11 | 0 | 1764 | 1965 | 405782544 | 405782343 | 4.880000e-81 | 313 |
4 | TraesCS4D01G243300 | chr4D | 94.554 | 202 | 11 | 0 | 1812 | 2013 | 405782592 | 405782391 | 4.880000e-81 | 313 |
5 | TraesCS4D01G243300 | chr4D | 92.157 | 153 | 12 | 0 | 1764 | 1916 | 405782496 | 405782344 | 3.940000e-52 | 217 |
6 | TraesCS4D01G243300 | chr4B | 96.000 | 5200 | 147 | 17 | 994 | 6163 | 505096535 | 505091367 | 0.000000e+00 | 8394 |
7 | TraesCS4D01G243300 | chr4B | 87.238 | 572 | 23 | 14 | 1 | 532 | 505097136 | 505096575 | 2.000000e-169 | 606 |
8 | TraesCS4D01G243300 | chr4B | 94.059 | 202 | 12 | 0 | 1812 | 2013 | 505095765 | 505095564 | 2.270000e-79 | 307 |
9 | TraesCS4D01G243300 | chr4B | 91.089 | 202 | 18 | 0 | 1764 | 1965 | 505095717 | 505095516 | 2.300000e-69 | 274 |
10 | TraesCS4D01G243300 | chr4B | 94.805 | 154 | 8 | 0 | 1860 | 2013 | 505095765 | 505095612 | 2.340000e-59 | 241 |
11 | TraesCS4D01G243300 | chr4B | 97.727 | 88 | 2 | 0 | 6399 | 6486 | 505091365 | 505091278 | 1.130000e-32 | 152 |
12 | TraesCS4D01G243300 | chr4A | 97.038 | 4929 | 106 | 10 | 994 | 5916 | 63552357 | 63547463 | 0.000000e+00 | 8257 |
13 | TraesCS4D01G243300 | chr4A | 86.422 | 545 | 35 | 25 | 1 | 532 | 63552919 | 63552401 | 1.580000e-155 | 560 |
14 | TraesCS4D01G243300 | chr4A | 95.312 | 192 | 9 | 0 | 5913 | 6104 | 63547282 | 63547091 | 8.170000e-79 | 305 |
15 | TraesCS4D01G243300 | chr4A | 93.069 | 202 | 14 | 0 | 1812 | 2013 | 63551590 | 63551389 | 4.920000e-76 | 296 |
16 | TraesCS4D01G243300 | chr4A | 91.089 | 202 | 18 | 0 | 1764 | 1965 | 63551542 | 63551341 | 2.300000e-69 | 274 |
17 | TraesCS4D01G243300 | chr4A | 96.591 | 88 | 3 | 0 | 6399 | 6486 | 63546831 | 63546744 | 5.240000e-31 | 147 |
18 | TraesCS4D01G243300 | chr6D | 97.817 | 229 | 4 | 1 | 6162 | 6389 | 289430778 | 289430550 | 1.700000e-105 | 394 |
19 | TraesCS4D01G243300 | chr6B | 96.943 | 229 | 5 | 2 | 6162 | 6389 | 237702045 | 237702272 | 3.670000e-102 | 383 |
20 | TraesCS4D01G243300 | chr1D | 97.758 | 223 | 2 | 3 | 6169 | 6389 | 154839666 | 154839445 | 1.320000e-101 | 381 |
21 | TraesCS4D01G243300 | chr3D | 97.309 | 223 | 5 | 1 | 6168 | 6389 | 125555594 | 125555372 | 1.710000e-100 | 377 |
22 | TraesCS4D01G243300 | chr1A | 97.321 | 224 | 3 | 3 | 6168 | 6389 | 228722399 | 228722177 | 1.710000e-100 | 377 |
23 | TraesCS4D01G243300 | chr1A | 97.321 | 224 | 3 | 3 | 6168 | 6389 | 305626528 | 305626750 | 1.710000e-100 | 377 |
24 | TraesCS4D01G243300 | chr1A | 97.321 | 224 | 3 | 3 | 6168 | 6389 | 430934973 | 430935195 | 1.710000e-100 | 377 |
25 | TraesCS4D01G243300 | chr7A | 96.491 | 228 | 7 | 1 | 6163 | 6389 | 144860589 | 144860362 | 6.140000e-100 | 375 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G243300 | chr4D | 405777870 | 405784355 | 6485 | True | 2395.400000 | 10144 | 96.253000 | 1 | 6486 | 5 | chr4D.!!$R2 | 6485 |
1 | TraesCS4D01G243300 | chr4B | 505091278 | 505097136 | 5858 | True | 1662.333333 | 8394 | 93.486333 | 1 | 6486 | 6 | chr4B.!!$R1 | 6485 |
2 | TraesCS4D01G243300 | chr4A | 63546744 | 63552919 | 6175 | True | 1639.833333 | 8257 | 93.253500 | 1 | 6486 | 6 | chr4A.!!$R1 | 6485 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
532 | 583 | 0.106894 | CACCCGCTCCTTCCTTATCC | 59.893 | 60.000 | 0.00 | 0.0 | 0.00 | 2.59 | F |
534 | 585 | 1.755384 | CCGCTCCTTCCTTATCCCC | 59.245 | 63.158 | 0.00 | 0.0 | 0.00 | 4.81 | F |
1868 | 1925 | 0.036388 | TCGGATGTCACAGGGAAAGC | 60.036 | 55.000 | 0.00 | 0.0 | 0.00 | 3.51 | F |
1916 | 1973 | 0.036388 | TCGGATGTCACAGGGAAAGC | 60.036 | 55.000 | 0.00 | 0.0 | 0.00 | 3.51 | F |
1924 | 1981 | 0.746063 | CACAGGGAAAGCAGCAAACA | 59.254 | 50.000 | 0.00 | 0.0 | 0.00 | 2.83 | F |
2428 | 2506 | 1.258982 | GATATTGCGCTTCGTCCAGTG | 59.741 | 52.381 | 9.73 | 0.0 | 0.00 | 3.66 | F |
3339 | 3417 | 1.442184 | CTCCCAGTTGTCGTCGTCG | 60.442 | 63.158 | 0.00 | 0.0 | 38.55 | 5.12 | F |
3567 | 3645 | 3.224417 | ATCTACCGAGAAAGGGAACCCC | 61.224 | 54.545 | 6.23 | 0.0 | 43.09 | 4.95 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1754 | 1811 | 0.036388 | TACTTTCCCTGCTTCTGCGG | 60.036 | 55.000 | 0.00 | 0.00 | 44.81 | 5.69 | R |
1901 | 1958 | 0.111061 | TGCTGCTTTCCCTGTGACAT | 59.889 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 | R |
3304 | 3382 | 0.250640 | GAGCATGGTCCATGGGCTAG | 60.251 | 60.000 | 29.17 | 7.57 | 41.64 | 3.42 | R |
3324 | 3402 | 0.386858 | ATGACGACGACGACAACTGG | 60.387 | 55.000 | 15.32 | 0.00 | 45.19 | 4.00 | R |
3567 | 3645 | 1.002087 | ACTTTCTGAAGTAGCGGGGTG | 59.998 | 52.381 | 0.00 | 0.00 | 44.13 | 4.61 | R |
4202 | 4280 | 2.771089 | TGCAAGAACTACAGAAGCCAG | 58.229 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 | R |
4620 | 4698 | 2.476185 | CGGCTTACCAGAAAAGAATGCG | 60.476 | 50.000 | 0.00 | 0.00 | 34.57 | 4.73 | R |
5507 | 5593 | 2.558359 | AGCAAGTTTGGTATCTGCAACC | 59.442 | 45.455 | 0.00 | 0.00 | 37.09 | 3.77 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
50 | 51 | 2.093816 | TGGCTCACACATCAGAGATCAC | 60.094 | 50.000 | 0.00 | 0.00 | 33.74 | 3.06 |
51 | 52 | 2.168106 | GGCTCACACATCAGAGATCACT | 59.832 | 50.000 | 0.00 | 0.00 | 33.74 | 3.41 |
105 | 107 | 1.695893 | GCACGACACGACCCATCATG | 61.696 | 60.000 | 0.00 | 0.00 | 0.00 | 3.07 |
106 | 108 | 1.447838 | ACGACACGACCCATCATGC | 60.448 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
110 | 112 | 3.014538 | ACGACCCATCATGCCCCA | 61.015 | 61.111 | 0.00 | 0.00 | 0.00 | 4.96 |
111 | 113 | 2.203252 | CGACCCATCATGCCCCAG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
112 | 114 | 2.520260 | GACCCATCATGCCCCAGC | 60.520 | 66.667 | 0.00 | 0.00 | 40.48 | 4.85 |
113 | 115 | 4.147587 | ACCCATCATGCCCCAGCC | 62.148 | 66.667 | 0.00 | 0.00 | 38.69 | 4.85 |
532 | 583 | 0.106894 | CACCCGCTCCTTCCTTATCC | 59.893 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
534 | 585 | 1.755384 | CCGCTCCTTCCTTATCCCC | 59.245 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
1071 | 1122 | 2.694760 | GCGGAGGTTCTACGACCGT | 61.695 | 63.158 | 3.47 | 0.00 | 40.79 | 4.83 |
1405 | 1462 | 4.988598 | ACGGCCACAAGTCTGCGG | 62.989 | 66.667 | 2.24 | 0.00 | 0.00 | 5.69 |
1743 | 1800 | 3.118075 | GGAAGGAGAAAGGGAAGATCAGG | 60.118 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
1754 | 1811 | 2.152830 | GAAGATCAGGGATGATGCAGC | 58.847 | 52.381 | 0.00 | 0.00 | 0.00 | 5.25 |
1755 | 1812 | 0.400975 | AGATCAGGGATGATGCAGCC | 59.599 | 55.000 | 0.00 | 0.00 | 39.48 | 4.85 |
1775 | 1832 | 2.359900 | CGCAGAAGCAGGGAAAGTAAT | 58.640 | 47.619 | 0.00 | 0.00 | 42.27 | 1.89 |
1826 | 1883 | 3.126001 | TGTCACAGGGAAAGTAGCAAG | 57.874 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
1868 | 1925 | 0.036388 | TCGGATGTCACAGGGAAAGC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1893 | 1950 | 3.818961 | AACACACAGCATGAGAAATCG | 57.181 | 42.857 | 0.00 | 0.00 | 39.69 | 3.34 |
1901 | 1958 | 1.869774 | CATGAGAAATCGGCATCGGA | 58.130 | 50.000 | 0.00 | 0.00 | 36.95 | 4.55 |
1910 | 1967 | 1.884464 | CGGCATCGGATGTCACAGG | 60.884 | 63.158 | 21.30 | 2.39 | 33.60 | 4.00 |
1916 | 1973 | 0.036388 | TCGGATGTCACAGGGAAAGC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1924 | 1981 | 0.746063 | CACAGGGAAAGCAGCAAACA | 59.254 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2241 | 2319 | 2.109834 | TGTCAATGATGTTGGGAAGGGT | 59.890 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
2428 | 2506 | 1.258982 | GATATTGCGCTTCGTCCAGTG | 59.741 | 52.381 | 9.73 | 0.00 | 0.00 | 3.66 |
2522 | 2600 | 2.307098 | AGGCCAGTTCTTTCAGTATGCT | 59.693 | 45.455 | 5.01 | 0.00 | 34.76 | 3.79 |
2900 | 2978 | 1.885233 | AGAAGAAAAAGAGGCAGCAGC | 59.115 | 47.619 | 0.00 | 0.00 | 41.10 | 5.25 |
3256 | 3334 | 4.632153 | TCTTTCACTAAGCTTGTCAGGTC | 58.368 | 43.478 | 9.86 | 0.00 | 33.66 | 3.85 |
3304 | 3382 | 2.834549 | TCTGTTCCCAGACCTGATTCTC | 59.165 | 50.000 | 0.00 | 0.00 | 42.80 | 2.87 |
3324 | 3402 | 1.708993 | TAGCCCATGGACCATGCTCC | 61.709 | 60.000 | 26.56 | 16.48 | 40.20 | 4.70 |
3339 | 3417 | 1.442184 | CTCCCAGTTGTCGTCGTCG | 60.442 | 63.158 | 0.00 | 0.00 | 38.55 | 5.12 |
3381 | 3459 | 6.705863 | AATTCAGATGGAATAACAGCTTCC | 57.294 | 37.500 | 0.00 | 0.00 | 45.46 | 3.46 |
3567 | 3645 | 3.224417 | ATCTACCGAGAAAGGGAACCCC | 61.224 | 54.545 | 6.23 | 0.00 | 43.09 | 4.95 |
3614 | 3692 | 7.451255 | ACTCCAAAATGGTCATTTGTCAGATAA | 59.549 | 33.333 | 9.37 | 0.00 | 40.57 | 1.75 |
4202 | 4280 | 9.677567 | TGATTGTAAAATTTGTAAGCAGAAGAC | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
4206 | 4284 | 4.773323 | AATTTGTAAGCAGAAGACTGGC | 57.227 | 40.909 | 0.00 | 0.00 | 43.62 | 4.85 |
5100 | 5186 | 4.657039 | AGGTGTTGTTTCTACTACTGGGAA | 59.343 | 41.667 | 0.00 | 0.00 | 32.26 | 3.97 |
5177 | 5263 | 4.225942 | AGCCAGTTTCTGATGAACTGGATA | 59.774 | 41.667 | 31.31 | 0.00 | 44.64 | 2.59 |
5315 | 5401 | 8.791327 | TGAAGAACATTATGCTACTCAAATGA | 57.209 | 30.769 | 0.00 | 0.00 | 34.26 | 2.57 |
5470 | 5556 | 4.836825 | TGAAAATGGAGGCAACAAAACAA | 58.163 | 34.783 | 0.00 | 0.00 | 41.41 | 2.83 |
5507 | 5593 | 0.872388 | GAGGTTACTGCCCGTGTTTG | 59.128 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
5595 | 5681 | 7.815383 | TCTTTCATGGTATATTCCCTTGATGT | 58.185 | 34.615 | 9.25 | 0.00 | 36.41 | 3.06 |
5656 | 5742 | 9.753674 | TCAAATGTTATCCAGTATCTTCCTTTT | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
6029 | 6299 | 4.805719 | GCAGCTACTTTGCACTTTCTTTTT | 59.194 | 37.500 | 0.00 | 0.00 | 41.17 | 1.94 |
6061 | 6331 | 2.548057 | AGTTTACCACAATGCAGACACG | 59.452 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
6079 | 6349 | 3.550275 | ACACGCACACAATGTCGTATATC | 59.450 | 43.478 | 0.00 | 0.00 | 34.31 | 1.63 |
6135 | 6607 | 4.764308 | GGGGAATGAAATGATAAGCTCTCC | 59.236 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
6156 | 6628 | 5.379187 | TCCGCTAGACTAATGTGGTGTATA | 58.621 | 41.667 | 0.00 | 0.00 | 33.50 | 1.47 |
6157 | 6629 | 5.829391 | TCCGCTAGACTAATGTGGTGTATAA | 59.171 | 40.000 | 0.00 | 0.00 | 33.50 | 0.98 |
6160 | 6632 | 7.656137 | CCGCTAGACTAATGTGGTGTATAATTT | 59.344 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
6161 | 6633 | 9.042008 | CGCTAGACTAATGTGGTGTATAATTTT | 57.958 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
6164 | 6636 | 8.519799 | AGACTAATGTGGTGTATAATTTTGGG | 57.480 | 34.615 | 0.00 | 0.00 | 0.00 | 4.12 |
6165 | 6637 | 8.113462 | AGACTAATGTGGTGTATAATTTTGGGT | 58.887 | 33.333 | 0.00 | 0.00 | 0.00 | 4.51 |
6166 | 6638 | 8.658840 | ACTAATGTGGTGTATAATTTTGGGTT | 57.341 | 30.769 | 0.00 | 0.00 | 0.00 | 4.11 |
6167 | 6639 | 9.756571 | ACTAATGTGGTGTATAATTTTGGGTTA | 57.243 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
6183 | 6655 | 9.830975 | ATTTTGGGTTAATTAGATAAATGCCAC | 57.169 | 29.630 | 0.00 | 0.00 | 0.00 | 5.01 |
6184 | 6656 | 8.602472 | TTTGGGTTAATTAGATAAATGCCACT | 57.398 | 30.769 | 0.00 | 0.00 | 0.00 | 4.00 |
6185 | 6657 | 7.817418 | TGGGTTAATTAGATAAATGCCACTC | 57.183 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6186 | 6658 | 6.775629 | TGGGTTAATTAGATAAATGCCACTCC | 59.224 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
6187 | 6659 | 6.775629 | GGGTTAATTAGATAAATGCCACTCCA | 59.224 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
6188 | 6660 | 7.286775 | GGGTTAATTAGATAAATGCCACTCCAA | 59.713 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
6189 | 6661 | 8.860088 | GGTTAATTAGATAAATGCCACTCCAAT | 58.140 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
6210 | 6682 | 7.512297 | CCAATTATGGCGATTCATAAAAATGC | 58.488 | 34.615 | 9.27 | 0.00 | 41.26 | 3.56 |
6211 | 6683 | 7.360269 | CCAATTATGGCGATTCATAAAAATGCC | 60.360 | 37.037 | 9.27 | 0.00 | 41.26 | 4.40 |
6213 | 6685 | 3.779759 | TGGCGATTCATAAAAATGCCAC | 58.220 | 40.909 | 0.00 | 0.00 | 45.35 | 5.01 |
6214 | 6686 | 3.446873 | TGGCGATTCATAAAAATGCCACT | 59.553 | 39.130 | 0.00 | 0.00 | 45.35 | 4.00 |
6215 | 6687 | 3.798337 | GGCGATTCATAAAAATGCCACTG | 59.202 | 43.478 | 0.00 | 0.00 | 40.66 | 3.66 |
6216 | 6688 | 3.243643 | GCGATTCATAAAAATGCCACTGC | 59.756 | 43.478 | 0.00 | 0.00 | 38.26 | 4.40 |
6227 | 6699 | 2.237393 | TGCCACTGCAATTTCCAAAC | 57.763 | 45.000 | 0.00 | 0.00 | 46.66 | 2.93 |
6228 | 6700 | 1.761784 | TGCCACTGCAATTTCCAAACT | 59.238 | 42.857 | 0.00 | 0.00 | 46.66 | 2.66 |
6229 | 6701 | 2.170187 | TGCCACTGCAATTTCCAAACTT | 59.830 | 40.909 | 0.00 | 0.00 | 46.66 | 2.66 |
6230 | 6702 | 3.205338 | GCCACTGCAATTTCCAAACTTT | 58.795 | 40.909 | 0.00 | 0.00 | 37.47 | 2.66 |
6231 | 6703 | 3.002553 | GCCACTGCAATTTCCAAACTTTG | 59.997 | 43.478 | 0.00 | 0.00 | 37.47 | 2.77 |
6232 | 6704 | 4.440880 | CCACTGCAATTTCCAAACTTTGA | 58.559 | 39.130 | 2.87 | 0.00 | 0.00 | 2.69 |
6233 | 6705 | 4.874966 | CCACTGCAATTTCCAAACTTTGAA | 59.125 | 37.500 | 2.87 | 0.00 | 0.00 | 2.69 |
6234 | 6706 | 5.353678 | CCACTGCAATTTCCAAACTTTGAAA | 59.646 | 36.000 | 2.87 | 3.11 | 0.00 | 2.69 |
6235 | 6707 | 6.128063 | CCACTGCAATTTCCAAACTTTGAAAA | 60.128 | 34.615 | 2.87 | 0.00 | 0.00 | 2.29 |
6236 | 6708 | 7.303998 | CACTGCAATTTCCAAACTTTGAAAAA | 58.696 | 30.769 | 2.87 | 4.27 | 0.00 | 1.94 |
6237 | 6709 | 7.969508 | CACTGCAATTTCCAAACTTTGAAAAAT | 59.030 | 29.630 | 2.87 | 6.16 | 31.56 | 1.82 |
6238 | 6710 | 7.969508 | ACTGCAATTTCCAAACTTTGAAAAATG | 59.030 | 29.630 | 2.87 | 0.43 | 31.07 | 2.32 |
6239 | 6711 | 6.750963 | TGCAATTTCCAAACTTTGAAAAATGC | 59.249 | 30.769 | 15.62 | 15.62 | 31.07 | 3.56 |
6240 | 6712 | 6.198778 | GCAATTTCCAAACTTTGAAAAATGCC | 59.801 | 34.615 | 12.80 | 6.14 | 31.07 | 4.40 |
6241 | 6713 | 7.256286 | CAATTTCCAAACTTTGAAAAATGCCA | 58.744 | 30.769 | 2.87 | 0.00 | 31.07 | 4.92 |
6242 | 6714 | 5.809719 | TTCCAAACTTTGAAAAATGCCAC | 57.190 | 34.783 | 2.87 | 0.00 | 0.00 | 5.01 |
6243 | 6715 | 5.096443 | TCCAAACTTTGAAAAATGCCACT | 57.904 | 34.783 | 2.87 | 0.00 | 0.00 | 4.00 |
6244 | 6716 | 4.874966 | TCCAAACTTTGAAAAATGCCACTG | 59.125 | 37.500 | 2.87 | 0.00 | 0.00 | 3.66 |
6245 | 6717 | 4.496175 | CCAAACTTTGAAAAATGCCACTGC | 60.496 | 41.667 | 2.87 | 0.00 | 38.26 | 4.40 |
6270 | 6742 | 6.609907 | ATTTTTGCAAACTTTGAAAAACGC | 57.390 | 29.167 | 16.90 | 0.00 | 45.39 | 4.84 |
6271 | 6743 | 3.731274 | TTGCAAACTTTGAAAAACGCC | 57.269 | 38.095 | 5.65 | 0.00 | 0.00 | 5.68 |
6272 | 6744 | 2.688507 | TGCAAACTTTGAAAAACGCCA | 58.311 | 38.095 | 5.65 | 0.00 | 0.00 | 5.69 |
6273 | 6745 | 2.413453 | TGCAAACTTTGAAAAACGCCAC | 59.587 | 40.909 | 5.65 | 0.00 | 0.00 | 5.01 |
6274 | 6746 | 2.670905 | GCAAACTTTGAAAAACGCCACT | 59.329 | 40.909 | 5.65 | 0.00 | 0.00 | 4.00 |
6275 | 6747 | 3.241963 | GCAAACTTTGAAAAACGCCACTC | 60.242 | 43.478 | 5.65 | 0.00 | 0.00 | 3.51 |
6276 | 6748 | 2.863401 | ACTTTGAAAAACGCCACTCC | 57.137 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6277 | 6749 | 2.096248 | ACTTTGAAAAACGCCACTCCA | 58.904 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
6278 | 6750 | 2.099098 | ACTTTGAAAAACGCCACTCCAG | 59.901 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
6279 | 6751 | 2.045561 | TTGAAAAACGCCACTCCAGA | 57.954 | 45.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6280 | 6752 | 1.305201 | TGAAAAACGCCACTCCAGAC | 58.695 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6281 | 6753 | 1.134220 | TGAAAAACGCCACTCCAGACT | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
6282 | 6754 | 1.947456 | GAAAAACGCCACTCCAGACTT | 59.053 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
6283 | 6755 | 1.594331 | AAAACGCCACTCCAGACTTC | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6284 | 6756 | 0.600255 | AAACGCCACTCCAGACTTCG | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
6285 | 6757 | 1.461091 | AACGCCACTCCAGACTTCGA | 61.461 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
6286 | 6758 | 1.289066 | CGCCACTCCAGACTTCGAA | 59.711 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
6287 | 6759 | 0.319555 | CGCCACTCCAGACTTCGAAA | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
6288 | 6760 | 1.872237 | CGCCACTCCAGACTTCGAAAA | 60.872 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
6289 | 6761 | 2.218603 | GCCACTCCAGACTTCGAAAAA | 58.781 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
6290 | 6762 | 2.814336 | GCCACTCCAGACTTCGAAAAAT | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
6291 | 6763 | 3.365364 | GCCACTCCAGACTTCGAAAAATG | 60.365 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
6292 | 6764 | 3.365364 | CCACTCCAGACTTCGAAAAATGC | 60.365 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
6293 | 6765 | 2.814336 | ACTCCAGACTTCGAAAAATGCC | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
6294 | 6766 | 2.813754 | CTCCAGACTTCGAAAAATGCCA | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
6295 | 6767 | 2.552315 | TCCAGACTTCGAAAAATGCCAC | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
6296 | 6768 | 2.554032 | CCAGACTTCGAAAAATGCCACT | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
6297 | 6769 | 3.558505 | CAGACTTCGAAAAATGCCACTG | 58.441 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
6298 | 6770 | 2.554032 | AGACTTCGAAAAATGCCACTGG | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
6299 | 6771 | 2.552315 | GACTTCGAAAAATGCCACTGGA | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
6300 | 6772 | 2.955660 | ACTTCGAAAAATGCCACTGGAA | 59.044 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
6301 | 6773 | 3.383185 | ACTTCGAAAAATGCCACTGGAAA | 59.617 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
6302 | 6774 | 4.039124 | ACTTCGAAAAATGCCACTGGAAAT | 59.961 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
6303 | 6775 | 3.911868 | TCGAAAAATGCCACTGGAAATG | 58.088 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
6304 | 6776 | 2.995258 | CGAAAAATGCCACTGGAAATGG | 59.005 | 45.455 | 0.00 | 0.00 | 40.50 | 3.16 |
6312 | 6784 | 3.899052 | CCACTGGAAATGGCATGAAAT | 57.101 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
6314 | 6786 | 3.527533 | CACTGGAAATGGCATGAAATGG | 58.472 | 45.455 | 0.00 | 0.00 | 46.86 | 3.16 |
6327 | 6799 | 6.004408 | GCATGAAATGGCATTTTTCAAAGT | 57.996 | 33.333 | 25.02 | 4.87 | 46.86 | 2.66 |
6328 | 6800 | 6.440436 | GCATGAAATGGCATTTTTCAAAGTT | 58.560 | 32.000 | 25.02 | 4.53 | 46.86 | 2.66 |
6329 | 6801 | 6.919115 | GCATGAAATGGCATTTTTCAAAGTTT | 59.081 | 30.769 | 25.02 | 4.19 | 46.86 | 2.66 |
6330 | 6802 | 7.096394 | GCATGAAATGGCATTTTTCAAAGTTTG | 60.096 | 33.333 | 25.02 | 15.43 | 46.86 | 2.93 |
6331 | 6803 | 6.793349 | TGAAATGGCATTTTTCAAAGTTTGG | 58.207 | 32.000 | 25.02 | 0.00 | 39.46 | 3.28 |
6332 | 6804 | 6.600822 | TGAAATGGCATTTTTCAAAGTTTGGA | 59.399 | 30.769 | 25.02 | 3.83 | 39.46 | 3.53 |
6333 | 6805 | 7.121759 | TGAAATGGCATTTTTCAAAGTTTGGAA | 59.878 | 29.630 | 25.02 | 10.54 | 39.46 | 3.53 |
6334 | 6806 | 7.585579 | AATGGCATTTTTCAAAGTTTGGAAT | 57.414 | 28.000 | 15.47 | 10.36 | 0.00 | 3.01 |
6335 | 6807 | 7.585579 | ATGGCATTTTTCAAAGTTTGGAATT | 57.414 | 28.000 | 15.47 | 1.73 | 0.00 | 2.17 |
6336 | 6808 | 6.793349 | TGGCATTTTTCAAAGTTTGGAATTG | 58.207 | 32.000 | 15.47 | 13.73 | 0.00 | 2.32 |
6337 | 6809 | 5.686841 | GGCATTTTTCAAAGTTTGGAATTGC | 59.313 | 36.000 | 24.04 | 24.04 | 35.40 | 3.56 |
6338 | 6810 | 6.264088 | GCATTTTTCAAAGTTTGGAATTGCA | 58.736 | 32.000 | 25.65 | 0.00 | 35.75 | 4.08 |
6339 | 6811 | 6.415573 | GCATTTTTCAAAGTTTGGAATTGCAG | 59.584 | 34.615 | 25.65 | 12.16 | 35.75 | 4.41 |
6340 | 6812 | 7.474190 | CATTTTTCAAAGTTTGGAATTGCAGT | 58.526 | 30.769 | 15.47 | 0.00 | 0.00 | 4.40 |
6341 | 6813 | 6.419980 | TTTTCAAAGTTTGGAATTGCAGTG | 57.580 | 33.333 | 15.47 | 0.00 | 0.00 | 3.66 |
6342 | 6814 | 4.057406 | TCAAAGTTTGGAATTGCAGTGG | 57.943 | 40.909 | 15.47 | 0.00 | 0.00 | 4.00 |
6343 | 6815 | 2.531522 | AAGTTTGGAATTGCAGTGGC | 57.468 | 45.000 | 0.00 | 0.00 | 41.68 | 5.01 |
6353 | 6825 | 3.190878 | GCAGTGGCATTTCTCGGG | 58.809 | 61.111 | 0.00 | 0.00 | 40.72 | 5.14 |
6354 | 6826 | 1.377202 | GCAGTGGCATTTCTCGGGA | 60.377 | 57.895 | 0.00 | 0.00 | 40.72 | 5.14 |
6355 | 6827 | 0.749454 | GCAGTGGCATTTCTCGGGAT | 60.749 | 55.000 | 0.00 | 0.00 | 40.72 | 3.85 |
6356 | 6828 | 1.303309 | CAGTGGCATTTCTCGGGATC | 58.697 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6357 | 6829 | 0.179073 | AGTGGCATTTCTCGGGATCG | 60.179 | 55.000 | 0.00 | 0.00 | 37.82 | 3.69 |
6358 | 6830 | 1.523711 | TGGCATTTCTCGGGATCGC | 60.524 | 57.895 | 0.00 | 0.00 | 36.13 | 4.58 |
6359 | 6831 | 2.254464 | GGCATTTCTCGGGATCGCC | 61.254 | 63.158 | 3.90 | 4.56 | 36.13 | 5.54 |
6360 | 6832 | 1.523711 | GCATTTCTCGGGATCGCCA | 60.524 | 57.895 | 3.90 | 0.00 | 36.13 | 5.69 |
6361 | 6833 | 1.502163 | GCATTTCTCGGGATCGCCAG | 61.502 | 60.000 | 3.90 | 0.60 | 36.13 | 4.85 |
6362 | 6834 | 0.104855 | CATTTCTCGGGATCGCCAGA | 59.895 | 55.000 | 2.91 | 2.91 | 36.88 | 3.86 |
6363 | 6835 | 1.051812 | ATTTCTCGGGATCGCCAGAT | 58.948 | 50.000 | 7.89 | 0.00 | 37.75 | 2.90 |
6364 | 6836 | 0.830648 | TTTCTCGGGATCGCCAGATT | 59.169 | 50.000 | 7.89 | 0.00 | 37.75 | 2.40 |
6365 | 6837 | 0.830648 | TTCTCGGGATCGCCAGATTT | 59.169 | 50.000 | 7.89 | 0.00 | 37.75 | 2.17 |
6366 | 6838 | 0.104855 | TCTCGGGATCGCCAGATTTG | 59.895 | 55.000 | 2.91 | 0.00 | 37.75 | 2.32 |
6368 | 6840 | 1.334384 | TCGGGATCGCCAGATTTGGA | 61.334 | 55.000 | 6.43 | 0.00 | 46.80 | 3.53 |
6369 | 6841 | 3.242705 | TCGGGATCGCCAGATTTGGAG | 62.243 | 57.143 | 6.43 | 2.53 | 46.80 | 3.86 |
6381 | 6853 | 5.840243 | CAGATTTGGAGTGGCATTTATCA | 57.160 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
6382 | 6854 | 6.211587 | CAGATTTGGAGTGGCATTTATCAA | 57.788 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
6383 | 6855 | 6.632909 | CAGATTTGGAGTGGCATTTATCAAA | 58.367 | 36.000 | 0.00 | 0.16 | 0.00 | 2.69 |
6384 | 6856 | 7.270047 | CAGATTTGGAGTGGCATTTATCAAAT | 58.730 | 34.615 | 14.55 | 14.55 | 36.46 | 2.32 |
6385 | 6857 | 7.767198 | CAGATTTGGAGTGGCATTTATCAAATT | 59.233 | 33.333 | 15.25 | 7.82 | 34.71 | 1.82 |
6386 | 6858 | 8.980596 | AGATTTGGAGTGGCATTTATCAAATTA | 58.019 | 29.630 | 15.25 | 0.00 | 34.71 | 1.40 |
6387 | 6859 | 9.598517 | GATTTGGAGTGGCATTTATCAAATTAA | 57.401 | 29.630 | 15.25 | 0.00 | 34.71 | 1.40 |
6388 | 6860 | 8.770438 | TTTGGAGTGGCATTTATCAAATTAAC | 57.230 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
6389 | 6861 | 7.716799 | TGGAGTGGCATTTATCAAATTAACT | 57.283 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6390 | 6862 | 7.546358 | TGGAGTGGCATTTATCAAATTAACTG | 58.454 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
6391 | 6863 | 6.980397 | GGAGTGGCATTTATCAAATTAACTGG | 59.020 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
6392 | 6864 | 7.147915 | GGAGTGGCATTTATCAAATTAACTGGA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
6393 | 6865 | 8.133024 | AGTGGCATTTATCAAATTAACTGGAA | 57.867 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
6394 | 6866 | 8.592809 | AGTGGCATTTATCAAATTAACTGGAAA | 58.407 | 29.630 | 0.00 | 0.00 | 0.00 | 3.13 |
6395 | 6867 | 9.382275 | GTGGCATTTATCAAATTAACTGGAAAT | 57.618 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
6396 | 6868 | 9.381033 | TGGCATTTATCAAATTAACTGGAAATG | 57.619 | 29.630 | 15.01 | 15.01 | 36.55 | 2.32 |
6397 | 6869 | 8.829612 | GGCATTTATCAAATTAACTGGAAATGG | 58.170 | 33.333 | 17.74 | 8.84 | 34.90 | 3.16 |
6398 | 6870 | 8.337532 | GCATTTATCAAATTAACTGGAAATGGC | 58.662 | 33.333 | 17.74 | 11.97 | 34.90 | 4.40 |
6399 | 6871 | 9.603921 | CATTTATCAAATTAACTGGAAATGGCT | 57.396 | 29.630 | 13.31 | 0.00 | 32.15 | 4.75 |
6446 | 6918 | 5.316987 | CTCCAGAGTAAAGACAAATGGGTT | 58.683 | 41.667 | 0.00 | 0.00 | 0.00 | 4.11 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
80 | 82 | 2.799916 | GTCGTGTCGTGCGGAGTC | 60.800 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
81 | 83 | 4.338539 | GGTCGTGTCGTGCGGAGT | 62.339 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
84 | 86 | 4.735132 | ATGGGTCGTGTCGTGCGG | 62.735 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
85 | 87 | 3.179265 | GATGGGTCGTGTCGTGCG | 61.179 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
86 | 88 | 1.447838 | ATGATGGGTCGTGTCGTGC | 60.448 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
87 | 89 | 1.695893 | GCATGATGGGTCGTGTCGTG | 61.696 | 60.000 | 0.00 | 0.00 | 42.25 | 4.35 |
153 | 157 | 4.873129 | CGGCGATGGTGGACTCGG | 62.873 | 72.222 | 0.00 | 0.00 | 35.48 | 4.63 |
286 | 300 | 4.760047 | CGCTCCCGTGGGTTCTGG | 62.760 | 72.222 | 4.53 | 0.00 | 36.47 | 3.86 |
323 | 351 | 1.404851 | CCCTGCTTCCTCGTCTCTTTC | 60.405 | 57.143 | 0.00 | 0.00 | 0.00 | 2.62 |
355 | 383 | 1.153429 | GATTTGGACCCGGGTCTCG | 60.153 | 63.158 | 44.11 | 13.47 | 44.04 | 4.04 |
409 | 437 | 4.332543 | TTCCTCCCGGCCACTCCT | 62.333 | 66.667 | 2.24 | 0.00 | 0.00 | 3.69 |
1452 | 1509 | 2.365586 | CCTCCTCCTGGGCTCACTG | 61.366 | 68.421 | 0.00 | 0.00 | 34.39 | 3.66 |
1754 | 1811 | 0.036388 | TACTTTCCCTGCTTCTGCGG | 60.036 | 55.000 | 0.00 | 0.00 | 44.81 | 5.69 |
1755 | 1812 | 1.808411 | TTACTTTCCCTGCTTCTGCG | 58.192 | 50.000 | 0.00 | 0.00 | 43.34 | 5.18 |
1775 | 1832 | 2.177394 | TTTCTCATGCTGCGTGGTTA | 57.823 | 45.000 | 20.78 | 5.00 | 0.00 | 2.85 |
1826 | 1883 | 2.731341 | GCTGATTTCTCATGCTGTGTGC | 60.731 | 50.000 | 0.00 | 0.00 | 43.25 | 4.57 |
1868 | 1925 | 1.605232 | TCTCATGCTGTGTGTTTGCTG | 59.395 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
1893 | 1950 | 1.524621 | CCCTGTGACATCCGATGCC | 60.525 | 63.158 | 8.36 | 0.00 | 0.00 | 4.40 |
1901 | 1958 | 0.111061 | TGCTGCTTTCCCTGTGACAT | 59.889 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1910 | 1967 | 1.843992 | CTGTGTGTTTGCTGCTTTCC | 58.156 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
1916 | 1973 | 1.605232 | TCTCATGCTGTGTGTTTGCTG | 59.395 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
1924 | 1981 | 2.786777 | TGCTGATTTCTCATGCTGTGT | 58.213 | 42.857 | 0.00 | 0.00 | 31.13 | 3.72 |
2091 | 2148 | 2.028476 | TCGTGTAACCACTTCCTCATGG | 60.028 | 50.000 | 0.00 | 0.00 | 39.55 | 3.66 |
2175 | 2232 | 2.637382 | TGTCACTTCTTCCATGGTAGCA | 59.363 | 45.455 | 12.58 | 0.34 | 0.00 | 3.49 |
2241 | 2319 | 5.129634 | TCTTTTTGTGTGCTGGATGAAGTA | 58.870 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2371 | 2449 | 4.082081 | GGCATTGATGTTTCCATCTGTTGA | 60.082 | 41.667 | 4.51 | 0.00 | 46.38 | 3.18 |
2405 | 2483 | 0.861837 | GGACGAAGCGCAATATCCAG | 59.138 | 55.000 | 11.47 | 0.00 | 0.00 | 3.86 |
2428 | 2506 | 4.864334 | CATCGCCCCCTGCAGGAC | 62.864 | 72.222 | 34.91 | 20.79 | 41.33 | 3.85 |
2522 | 2600 | 0.250684 | TTCATGCACCGCTTCCTTCA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2557 | 2635 | 8.436778 | TCCTAGCAAATTAATGGTATTAGCAGA | 58.563 | 33.333 | 1.69 | 0.00 | 33.24 | 4.26 |
2592 | 2670 | 1.412710 | TCCTCCAGCATAACGGATGAC | 59.587 | 52.381 | 3.92 | 0.00 | 37.82 | 3.06 |
2620 | 2698 | 5.209818 | TCTTTCGTGGTTACTGTCTCATT | 57.790 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2767 | 2845 | 7.718753 | AGTTGTTTCATCAATCTTCTTGTCTCT | 59.281 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
2892 | 2970 | 1.171308 | TTTCATTCTCAGCTGCTGCC | 58.829 | 50.000 | 24.38 | 0.00 | 40.80 | 4.85 |
2900 | 2978 | 3.997319 | TCGCAACGATTTCATTCTCAG | 57.003 | 42.857 | 0.00 | 0.00 | 0.00 | 3.35 |
3256 | 3334 | 6.494893 | TTTGAATTCAGGATCCTGTAAACG | 57.505 | 37.500 | 35.34 | 14.25 | 43.96 | 3.60 |
3304 | 3382 | 0.250640 | GAGCATGGTCCATGGGCTAG | 60.251 | 60.000 | 29.17 | 7.57 | 41.64 | 3.42 |
3324 | 3402 | 0.386858 | ATGACGACGACGACAACTGG | 60.387 | 55.000 | 15.32 | 0.00 | 45.19 | 4.00 |
3339 | 3417 | 6.327154 | TGAATTTGTGCAGAATGATGATGAC | 58.673 | 36.000 | 0.00 | 0.00 | 39.69 | 3.06 |
3381 | 3459 | 5.065090 | TGCTTGAGAATTGGTCAATGATACG | 59.935 | 40.000 | 0.00 | 0.00 | 33.49 | 3.06 |
3510 | 3588 | 2.432146 | CTCTACTTGCCATCCTGTGCTA | 59.568 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
3567 | 3645 | 1.002087 | ACTTTCTGAAGTAGCGGGGTG | 59.998 | 52.381 | 0.00 | 0.00 | 44.13 | 4.61 |
3587 | 3665 | 6.303054 | TCTGACAAATGACCATTTTGGAGTA | 58.697 | 36.000 | 5.32 | 0.00 | 40.96 | 2.59 |
4202 | 4280 | 2.771089 | TGCAAGAACTACAGAAGCCAG | 58.229 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
4206 | 4284 | 4.075763 | GCACATGCAAGAACTACAGAAG | 57.924 | 45.455 | 0.00 | 0.00 | 41.59 | 2.85 |
4620 | 4698 | 2.476185 | CGGCTTACCAGAAAAGAATGCG | 60.476 | 50.000 | 0.00 | 0.00 | 34.57 | 4.73 |
4660 | 4738 | 8.137437 | ACAAGCATGGCAATGTTAACTATTATC | 58.863 | 33.333 | 7.22 | 2.65 | 36.08 | 1.75 |
5100 | 5186 | 7.225538 | CAGCTATTTTTCTAGACATCGATTGGT | 59.774 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
5177 | 5263 | 3.055747 | GCCTGCTTTAACCTCACTAGACT | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
5315 | 5401 | 5.182001 | GCAACTCATTTATGTGGAGTTCAGT | 59.818 | 40.000 | 3.48 | 0.00 | 45.94 | 3.41 |
5416 | 5502 | 8.107196 | ACTCCCTAATGTTATCTTTCATCCTT | 57.893 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
5470 | 5556 | 7.822822 | AGTAACCTCGTTTATGTGCTTAGATTT | 59.177 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
5507 | 5593 | 2.558359 | AGCAAGTTTGGTATCTGCAACC | 59.442 | 45.455 | 0.00 | 0.00 | 37.09 | 3.77 |
5595 | 5681 | 5.949952 | TCTTACTGTATGGTAGTCTCAGCAA | 59.050 | 40.000 | 1.46 | 0.00 | 0.00 | 3.91 |
5688 | 5774 | 9.453572 | AGATATGTCAGCTTCAAAAACTGAATA | 57.546 | 29.630 | 0.00 | 0.00 | 43.20 | 1.75 |
5734 | 5820 | 3.316308 | GGTGCACAAAATATAGGAGCTGG | 59.684 | 47.826 | 20.43 | 0.00 | 0.00 | 4.85 |
5833 | 5919 | 9.364989 | CAGAAACTTACATCAGGAAAACAAAAA | 57.635 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
5836 | 5922 | 7.338196 | TCACAGAAACTTACATCAGGAAAACAA | 59.662 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
6029 | 6299 | 7.013750 | TGCATTGTGGTAAACTGTTCAAATAGA | 59.986 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
6061 | 6331 | 8.017587 | TGATAATGATATACGACATTGTGTGC | 57.982 | 34.615 | 0.00 | 0.00 | 37.32 | 4.57 |
6135 | 6607 | 8.589335 | AAATTATACACCACATTAGTCTAGCG | 57.411 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
6157 | 6629 | 9.830975 | GTGGCATTTATCTAATTAACCCAAAAT | 57.169 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
6160 | 6632 | 7.286775 | GGAGTGGCATTTATCTAATTAACCCAA | 59.713 | 37.037 | 0.00 | 0.00 | 0.00 | 4.12 |
6161 | 6633 | 6.775629 | GGAGTGGCATTTATCTAATTAACCCA | 59.224 | 38.462 | 0.00 | 0.00 | 0.00 | 4.51 |
6162 | 6634 | 6.775629 | TGGAGTGGCATTTATCTAATTAACCC | 59.224 | 38.462 | 0.00 | 0.00 | 0.00 | 4.11 |
6163 | 6635 | 7.817418 | TGGAGTGGCATTTATCTAATTAACC | 57.183 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
6168 | 6640 | 9.028284 | CCATAATTGGAGTGGCATTTATCTAAT | 57.972 | 33.333 | 0.00 | 0.00 | 46.92 | 1.73 |
6169 | 6641 | 8.408043 | CCATAATTGGAGTGGCATTTATCTAA | 57.592 | 34.615 | 0.00 | 0.00 | 46.92 | 2.10 |
6171 | 6643 | 6.906157 | CCATAATTGGAGTGGCATTTATCT | 57.094 | 37.500 | 0.00 | 0.00 | 46.92 | 1.98 |
6180 | 6652 | 3.213506 | TGAATCGCCATAATTGGAGTGG | 58.786 | 45.455 | 0.00 | 0.00 | 46.92 | 4.00 |
6181 | 6653 | 6.558771 | TTATGAATCGCCATAATTGGAGTG | 57.441 | 37.500 | 0.00 | 0.00 | 46.92 | 3.51 |
6182 | 6654 | 7.581213 | TTTTATGAATCGCCATAATTGGAGT | 57.419 | 32.000 | 0.00 | 0.00 | 46.92 | 3.85 |
6183 | 6655 | 8.918658 | CATTTTTATGAATCGCCATAATTGGAG | 58.081 | 33.333 | 0.00 | 0.00 | 46.92 | 3.86 |
6184 | 6656 | 7.384660 | GCATTTTTATGAATCGCCATAATTGGA | 59.615 | 33.333 | 0.00 | 0.00 | 46.92 | 3.53 |
6185 | 6657 | 7.360269 | GGCATTTTTATGAATCGCCATAATTGG | 60.360 | 37.037 | 0.00 | 0.00 | 46.66 | 3.16 |
6186 | 6658 | 7.171167 | TGGCATTTTTATGAATCGCCATAATTG | 59.829 | 33.333 | 0.00 | 0.00 | 38.40 | 2.32 |
6187 | 6659 | 7.171337 | GTGGCATTTTTATGAATCGCCATAATT | 59.829 | 33.333 | 3.22 | 0.00 | 41.12 | 1.40 |
6188 | 6660 | 6.646240 | GTGGCATTTTTATGAATCGCCATAAT | 59.354 | 34.615 | 3.22 | 0.00 | 41.12 | 1.28 |
6189 | 6661 | 5.982516 | GTGGCATTTTTATGAATCGCCATAA | 59.017 | 36.000 | 3.22 | 0.00 | 41.12 | 1.90 |
6190 | 6662 | 5.301551 | AGTGGCATTTTTATGAATCGCCATA | 59.698 | 36.000 | 3.22 | 0.00 | 41.12 | 2.74 |
6191 | 6663 | 4.099881 | AGTGGCATTTTTATGAATCGCCAT | 59.900 | 37.500 | 3.22 | 0.00 | 41.12 | 4.40 |
6192 | 6664 | 3.446873 | AGTGGCATTTTTATGAATCGCCA | 59.553 | 39.130 | 0.00 | 0.00 | 39.07 | 5.69 |
6193 | 6665 | 3.798337 | CAGTGGCATTTTTATGAATCGCC | 59.202 | 43.478 | 0.00 | 0.00 | 35.56 | 5.54 |
6194 | 6666 | 3.243643 | GCAGTGGCATTTTTATGAATCGC | 59.756 | 43.478 | 0.00 | 0.00 | 40.72 | 4.58 |
6209 | 6681 | 2.531522 | AGTTTGGAAATTGCAGTGGC | 57.468 | 45.000 | 0.00 | 0.00 | 41.68 | 5.01 |
6210 | 6682 | 4.440880 | TCAAAGTTTGGAAATTGCAGTGG | 58.559 | 39.130 | 15.47 | 0.00 | 0.00 | 4.00 |
6211 | 6683 | 6.419980 | TTTCAAAGTTTGGAAATTGCAGTG | 57.580 | 33.333 | 15.47 | 0.00 | 0.00 | 3.66 |
6212 | 6684 | 7.446001 | TTTTTCAAAGTTTGGAAATTGCAGT | 57.554 | 28.000 | 20.26 | 0.00 | 37.93 | 4.40 |
6213 | 6685 | 8.330302 | CATTTTTCAAAGTTTGGAAATTGCAG | 57.670 | 30.769 | 22.21 | 10.09 | 37.93 | 4.41 |
6216 | 6688 | 7.220491 | GTGGCATTTTTCAAAGTTTGGAAATTG | 59.780 | 33.333 | 26.17 | 26.17 | 37.93 | 2.32 |
6217 | 6689 | 7.122501 | AGTGGCATTTTTCAAAGTTTGGAAATT | 59.877 | 29.630 | 20.26 | 14.79 | 37.93 | 1.82 |
6218 | 6690 | 6.602803 | AGTGGCATTTTTCAAAGTTTGGAAAT | 59.397 | 30.769 | 20.26 | 18.72 | 37.93 | 2.17 |
6219 | 6691 | 5.942826 | AGTGGCATTTTTCAAAGTTTGGAAA | 59.057 | 32.000 | 16.59 | 16.59 | 36.38 | 3.13 |
6220 | 6692 | 5.353678 | CAGTGGCATTTTTCAAAGTTTGGAA | 59.646 | 36.000 | 15.47 | 10.54 | 0.00 | 3.53 |
6221 | 6693 | 4.874966 | CAGTGGCATTTTTCAAAGTTTGGA | 59.125 | 37.500 | 15.47 | 3.83 | 0.00 | 3.53 |
6222 | 6694 | 4.496175 | GCAGTGGCATTTTTCAAAGTTTGG | 60.496 | 41.667 | 15.47 | 0.00 | 40.72 | 3.28 |
6223 | 6695 | 4.590226 | GCAGTGGCATTTTTCAAAGTTTG | 58.410 | 39.130 | 9.44 | 9.44 | 40.72 | 2.93 |
6224 | 6696 | 4.880886 | GCAGTGGCATTTTTCAAAGTTT | 57.119 | 36.364 | 0.00 | 0.00 | 40.72 | 2.66 |
6245 | 6717 | 6.941681 | GCGTTTTTCAAAGTTTGCAAAAATTG | 59.058 | 30.769 | 22.13 | 22.79 | 37.48 | 2.32 |
6246 | 6718 | 6.088749 | GGCGTTTTTCAAAGTTTGCAAAAATT | 59.911 | 30.769 | 22.13 | 9.21 | 37.48 | 1.82 |
6247 | 6719 | 5.570973 | GGCGTTTTTCAAAGTTTGCAAAAAT | 59.429 | 32.000 | 22.13 | 2.58 | 37.48 | 1.82 |
6248 | 6720 | 4.912187 | GGCGTTTTTCAAAGTTTGCAAAAA | 59.088 | 33.333 | 22.13 | 21.83 | 37.48 | 1.94 |
6249 | 6721 | 4.024048 | TGGCGTTTTTCAAAGTTTGCAAAA | 60.024 | 33.333 | 18.29 | 18.29 | 34.31 | 2.44 |
6250 | 6722 | 3.498397 | TGGCGTTTTTCAAAGTTTGCAAA | 59.502 | 34.783 | 8.05 | 8.05 | 0.00 | 3.68 |
6251 | 6723 | 3.067106 | TGGCGTTTTTCAAAGTTTGCAA | 58.933 | 36.364 | 10.90 | 3.49 | 0.00 | 4.08 |
6252 | 6724 | 2.413453 | GTGGCGTTTTTCAAAGTTTGCA | 59.587 | 40.909 | 10.90 | 0.00 | 0.00 | 4.08 |
6253 | 6725 | 2.670905 | AGTGGCGTTTTTCAAAGTTTGC | 59.329 | 40.909 | 10.90 | 0.00 | 0.00 | 3.68 |
6254 | 6726 | 3.305897 | GGAGTGGCGTTTTTCAAAGTTTG | 59.694 | 43.478 | 9.44 | 9.44 | 0.00 | 2.93 |
6255 | 6727 | 3.056465 | TGGAGTGGCGTTTTTCAAAGTTT | 60.056 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
6256 | 6728 | 2.494073 | TGGAGTGGCGTTTTTCAAAGTT | 59.506 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
6257 | 6729 | 2.096248 | TGGAGTGGCGTTTTTCAAAGT | 58.904 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
6258 | 6730 | 2.357637 | TCTGGAGTGGCGTTTTTCAAAG | 59.642 | 45.455 | 0.00 | 0.00 | 0.00 | 2.77 |
6259 | 6731 | 2.098443 | GTCTGGAGTGGCGTTTTTCAAA | 59.902 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
6260 | 6732 | 1.673920 | GTCTGGAGTGGCGTTTTTCAA | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
6261 | 6733 | 1.134220 | AGTCTGGAGTGGCGTTTTTCA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
6262 | 6734 | 1.594331 | AGTCTGGAGTGGCGTTTTTC | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6263 | 6735 | 1.947456 | GAAGTCTGGAGTGGCGTTTTT | 59.053 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
6264 | 6736 | 1.594331 | GAAGTCTGGAGTGGCGTTTT | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
6265 | 6737 | 0.600255 | CGAAGTCTGGAGTGGCGTTT | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
6266 | 6738 | 1.006102 | CGAAGTCTGGAGTGGCGTT | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 4.84 |
6267 | 6739 | 1.461091 | TTCGAAGTCTGGAGTGGCGT | 61.461 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
6268 | 6740 | 0.319555 | TTTCGAAGTCTGGAGTGGCG | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
6269 | 6741 | 1.878953 | TTTTCGAAGTCTGGAGTGGC | 58.121 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
6270 | 6742 | 3.365364 | GCATTTTTCGAAGTCTGGAGTGG | 60.365 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
6271 | 6743 | 3.365364 | GGCATTTTTCGAAGTCTGGAGTG | 60.365 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
6272 | 6744 | 2.814336 | GGCATTTTTCGAAGTCTGGAGT | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
6273 | 6745 | 2.813754 | TGGCATTTTTCGAAGTCTGGAG | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
6274 | 6746 | 2.552315 | GTGGCATTTTTCGAAGTCTGGA | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
6275 | 6747 | 2.554032 | AGTGGCATTTTTCGAAGTCTGG | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
6276 | 6748 | 3.558505 | CAGTGGCATTTTTCGAAGTCTG | 58.441 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
6277 | 6749 | 2.554032 | CCAGTGGCATTTTTCGAAGTCT | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
6278 | 6750 | 2.552315 | TCCAGTGGCATTTTTCGAAGTC | 59.448 | 45.455 | 3.51 | 0.00 | 0.00 | 3.01 |
6279 | 6751 | 2.582052 | TCCAGTGGCATTTTTCGAAGT | 58.418 | 42.857 | 3.51 | 0.00 | 0.00 | 3.01 |
6280 | 6752 | 3.641437 | TTCCAGTGGCATTTTTCGAAG | 57.359 | 42.857 | 3.51 | 0.00 | 0.00 | 3.79 |
6281 | 6753 | 4.305769 | CATTTCCAGTGGCATTTTTCGAA | 58.694 | 39.130 | 3.51 | 0.00 | 0.00 | 3.71 |
6282 | 6754 | 3.305950 | CCATTTCCAGTGGCATTTTTCGA | 60.306 | 43.478 | 3.51 | 0.00 | 0.00 | 3.71 |
6283 | 6755 | 2.995258 | CCATTTCCAGTGGCATTTTTCG | 59.005 | 45.455 | 3.51 | 0.00 | 0.00 | 3.46 |
6292 | 6764 | 3.527533 | CATTTCATGCCATTTCCAGTGG | 58.472 | 45.455 | 1.40 | 1.40 | 39.80 | 4.00 |
6293 | 6765 | 3.527533 | CCATTTCATGCCATTTCCAGTG | 58.472 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
6294 | 6766 | 2.093341 | GCCATTTCATGCCATTTCCAGT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
6295 | 6767 | 2.093394 | TGCCATTTCATGCCATTTCCAG | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
6296 | 6768 | 1.907255 | TGCCATTTCATGCCATTTCCA | 59.093 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
6297 | 6769 | 2.695127 | TGCCATTTCATGCCATTTCC | 57.305 | 45.000 | 0.00 | 0.00 | 0.00 | 3.13 |
6298 | 6770 | 5.570234 | AAAATGCCATTTCATGCCATTTC | 57.430 | 34.783 | 2.61 | 0.00 | 0.00 | 2.17 |
6299 | 6771 | 5.477291 | TGAAAAATGCCATTTCATGCCATTT | 59.523 | 32.000 | 2.61 | 0.91 | 40.75 | 2.32 |
6300 | 6772 | 5.010933 | TGAAAAATGCCATTTCATGCCATT | 58.989 | 33.333 | 2.61 | 0.00 | 40.75 | 3.16 |
6301 | 6773 | 4.590918 | TGAAAAATGCCATTTCATGCCAT | 58.409 | 34.783 | 2.61 | 0.00 | 40.75 | 4.40 |
6302 | 6774 | 4.017177 | TGAAAAATGCCATTTCATGCCA | 57.983 | 36.364 | 2.61 | 0.00 | 40.75 | 4.92 |
6303 | 6775 | 5.048573 | ACTTTGAAAAATGCCATTTCATGCC | 60.049 | 36.000 | 2.61 | 0.00 | 43.94 | 4.40 |
6304 | 6776 | 6.004408 | ACTTTGAAAAATGCCATTTCATGC | 57.996 | 33.333 | 2.61 | 0.00 | 43.94 | 4.06 |
6305 | 6777 | 7.380065 | CCAAACTTTGAAAAATGCCATTTCATG | 59.620 | 33.333 | 2.61 | 0.00 | 43.94 | 3.07 |
6306 | 6778 | 7.284944 | TCCAAACTTTGAAAAATGCCATTTCAT | 59.715 | 29.630 | 2.61 | 0.00 | 43.94 | 2.57 |
6307 | 6779 | 6.600822 | TCCAAACTTTGAAAAATGCCATTTCA | 59.399 | 30.769 | 2.61 | 0.00 | 43.12 | 2.69 |
6308 | 6780 | 7.025485 | TCCAAACTTTGAAAAATGCCATTTC | 57.975 | 32.000 | 2.61 | 0.00 | 37.31 | 2.17 |
6309 | 6781 | 7.401955 | TTCCAAACTTTGAAAAATGCCATTT | 57.598 | 28.000 | 2.87 | 0.00 | 0.00 | 2.32 |
6310 | 6782 | 7.585579 | ATTCCAAACTTTGAAAAATGCCATT | 57.414 | 28.000 | 2.87 | 0.00 | 0.00 | 3.16 |
6311 | 6783 | 7.427214 | CAATTCCAAACTTTGAAAAATGCCAT | 58.573 | 30.769 | 2.87 | 0.00 | 0.00 | 4.40 |
6312 | 6784 | 6.679884 | GCAATTCCAAACTTTGAAAAATGCCA | 60.680 | 34.615 | 13.43 | 0.00 | 31.57 | 4.92 |
6313 | 6785 | 5.686841 | GCAATTCCAAACTTTGAAAAATGCC | 59.313 | 36.000 | 13.43 | 3.31 | 31.57 | 4.40 |
6314 | 6786 | 6.264088 | TGCAATTCCAAACTTTGAAAAATGC | 58.736 | 32.000 | 15.65 | 15.65 | 34.98 | 3.56 |
6315 | 6787 | 7.429920 | CACTGCAATTCCAAACTTTGAAAAATG | 59.570 | 33.333 | 2.87 | 2.69 | 0.00 | 2.32 |
6316 | 6788 | 7.415429 | CCACTGCAATTCCAAACTTTGAAAAAT | 60.415 | 33.333 | 2.87 | 0.00 | 0.00 | 1.82 |
6317 | 6789 | 6.128063 | CCACTGCAATTCCAAACTTTGAAAAA | 60.128 | 34.615 | 2.87 | 0.00 | 0.00 | 1.94 |
6318 | 6790 | 5.353678 | CCACTGCAATTCCAAACTTTGAAAA | 59.646 | 36.000 | 2.87 | 0.00 | 0.00 | 2.29 |
6319 | 6791 | 4.874966 | CCACTGCAATTCCAAACTTTGAAA | 59.125 | 37.500 | 2.87 | 0.00 | 0.00 | 2.69 |
6320 | 6792 | 4.440880 | CCACTGCAATTCCAAACTTTGAA | 58.559 | 39.130 | 2.87 | 0.00 | 0.00 | 2.69 |
6321 | 6793 | 3.740764 | GCCACTGCAATTCCAAACTTTGA | 60.741 | 43.478 | 2.87 | 0.00 | 37.47 | 2.69 |
6322 | 6794 | 2.545106 | GCCACTGCAATTCCAAACTTTG | 59.455 | 45.455 | 0.00 | 0.00 | 37.47 | 2.77 |
6323 | 6795 | 2.170187 | TGCCACTGCAATTCCAAACTTT | 59.830 | 40.909 | 0.00 | 0.00 | 46.66 | 2.66 |
6324 | 6796 | 1.761784 | TGCCACTGCAATTCCAAACTT | 59.238 | 42.857 | 0.00 | 0.00 | 46.66 | 2.66 |
6325 | 6797 | 1.412079 | TGCCACTGCAATTCCAAACT | 58.588 | 45.000 | 0.00 | 0.00 | 46.66 | 2.66 |
6326 | 6798 | 3.984838 | TGCCACTGCAATTCCAAAC | 57.015 | 47.368 | 0.00 | 0.00 | 46.66 | 2.93 |
6336 | 6808 | 0.749454 | ATCCCGAGAAATGCCACTGC | 60.749 | 55.000 | 0.00 | 0.00 | 38.26 | 4.40 |
6337 | 6809 | 1.303309 | GATCCCGAGAAATGCCACTG | 58.697 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
6338 | 6810 | 0.179073 | CGATCCCGAGAAATGCCACT | 60.179 | 55.000 | 0.00 | 0.00 | 38.22 | 4.00 |
6339 | 6811 | 1.776034 | GCGATCCCGAGAAATGCCAC | 61.776 | 60.000 | 0.00 | 0.00 | 38.22 | 5.01 |
6340 | 6812 | 1.523711 | GCGATCCCGAGAAATGCCA | 60.524 | 57.895 | 0.00 | 0.00 | 38.22 | 4.92 |
6341 | 6813 | 2.254464 | GGCGATCCCGAGAAATGCC | 61.254 | 63.158 | 0.00 | 0.00 | 38.22 | 4.40 |
6342 | 6814 | 1.502163 | CTGGCGATCCCGAGAAATGC | 61.502 | 60.000 | 0.00 | 0.00 | 38.22 | 3.56 |
6343 | 6815 | 0.104855 | TCTGGCGATCCCGAGAAATG | 59.895 | 55.000 | 0.00 | 0.00 | 38.22 | 2.32 |
6344 | 6816 | 1.051812 | ATCTGGCGATCCCGAGAAAT | 58.948 | 50.000 | 0.00 | 0.00 | 38.22 | 2.17 |
6345 | 6817 | 0.830648 | AATCTGGCGATCCCGAGAAA | 59.169 | 50.000 | 0.00 | 0.00 | 38.22 | 2.52 |
6346 | 6818 | 0.830648 | AAATCTGGCGATCCCGAGAA | 59.169 | 50.000 | 0.00 | 0.00 | 38.22 | 2.87 |
6347 | 6819 | 0.104855 | CAAATCTGGCGATCCCGAGA | 59.895 | 55.000 | 0.00 | 0.00 | 38.22 | 4.04 |
6348 | 6820 | 0.882042 | CCAAATCTGGCGATCCCGAG | 60.882 | 60.000 | 0.00 | 0.00 | 35.39 | 4.63 |
6349 | 6821 | 1.146041 | CCAAATCTGGCGATCCCGA | 59.854 | 57.895 | 0.00 | 0.00 | 35.39 | 5.14 |
6350 | 6822 | 0.882042 | CTCCAAATCTGGCGATCCCG | 60.882 | 60.000 | 0.00 | 0.00 | 43.17 | 5.14 |
6351 | 6823 | 0.181350 | ACTCCAAATCTGGCGATCCC | 59.819 | 55.000 | 0.00 | 0.00 | 43.17 | 3.85 |
6352 | 6824 | 1.303309 | CACTCCAAATCTGGCGATCC | 58.697 | 55.000 | 0.00 | 0.00 | 43.17 | 3.36 |
6353 | 6825 | 1.303309 | CCACTCCAAATCTGGCGATC | 58.697 | 55.000 | 0.00 | 0.00 | 43.17 | 3.69 |
6354 | 6826 | 0.749454 | GCCACTCCAAATCTGGCGAT | 60.749 | 55.000 | 0.00 | 0.00 | 43.17 | 4.58 |
6355 | 6827 | 1.377202 | GCCACTCCAAATCTGGCGA | 60.377 | 57.895 | 0.00 | 0.00 | 43.17 | 5.54 |
6356 | 6828 | 3.190878 | GCCACTCCAAATCTGGCG | 58.809 | 61.111 | 0.00 | 0.00 | 43.17 | 5.69 |
6358 | 6830 | 4.646040 | TGATAAATGCCACTCCAAATCTGG | 59.354 | 41.667 | 0.00 | 0.00 | 45.08 | 3.86 |
6359 | 6831 | 5.840243 | TGATAAATGCCACTCCAAATCTG | 57.160 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
6360 | 6832 | 6.855763 | TTTGATAAATGCCACTCCAAATCT | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
6361 | 6833 | 9.598517 | TTAATTTGATAAATGCCACTCCAAATC | 57.401 | 29.630 | 0.00 | 0.00 | 33.33 | 2.17 |
6362 | 6834 | 9.382275 | GTTAATTTGATAAATGCCACTCCAAAT | 57.618 | 29.630 | 0.00 | 0.00 | 35.18 | 2.32 |
6363 | 6835 | 8.592809 | AGTTAATTTGATAAATGCCACTCCAAA | 58.407 | 29.630 | 0.00 | 0.00 | 0.00 | 3.28 |
6364 | 6836 | 8.034215 | CAGTTAATTTGATAAATGCCACTCCAA | 58.966 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
6365 | 6837 | 7.363705 | CCAGTTAATTTGATAAATGCCACTCCA | 60.364 | 37.037 | 0.00 | 0.00 | 31.38 | 3.86 |
6366 | 6838 | 6.980397 | CCAGTTAATTTGATAAATGCCACTCC | 59.020 | 38.462 | 0.00 | 0.00 | 31.38 | 3.85 |
6367 | 6839 | 7.771183 | TCCAGTTAATTTGATAAATGCCACTC | 58.229 | 34.615 | 0.00 | 0.00 | 31.38 | 3.51 |
6368 | 6840 | 7.716799 | TCCAGTTAATTTGATAAATGCCACT | 57.283 | 32.000 | 0.00 | 0.00 | 31.38 | 4.00 |
6369 | 6841 | 8.770438 | TTTCCAGTTAATTTGATAAATGCCAC | 57.230 | 30.769 | 0.00 | 0.00 | 31.38 | 5.01 |
6370 | 6842 | 9.381033 | CATTTCCAGTTAATTTGATAAATGCCA | 57.619 | 29.630 | 0.00 | 0.00 | 31.38 | 4.92 |
6371 | 6843 | 8.829612 | CCATTTCCAGTTAATTTGATAAATGCC | 58.170 | 33.333 | 15.63 | 0.00 | 32.88 | 4.40 |
6372 | 6844 | 8.337532 | GCCATTTCCAGTTAATTTGATAAATGC | 58.662 | 33.333 | 15.63 | 11.53 | 32.88 | 3.56 |
6373 | 6845 | 9.603921 | AGCCATTTCCAGTTAATTTGATAAATG | 57.396 | 29.630 | 14.92 | 14.92 | 33.39 | 2.32 |
6376 | 6848 | 9.474313 | AGTAGCCATTTCCAGTTAATTTGATAA | 57.526 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
6377 | 6849 | 8.902806 | CAGTAGCCATTTCCAGTTAATTTGATA | 58.097 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
6378 | 6850 | 7.615365 | TCAGTAGCCATTTCCAGTTAATTTGAT | 59.385 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
6379 | 6851 | 6.945435 | TCAGTAGCCATTTCCAGTTAATTTGA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
6380 | 6852 | 7.156876 | TCAGTAGCCATTTCCAGTTAATTTG | 57.843 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
6381 | 6853 | 7.574967 | CGTTCAGTAGCCATTTCCAGTTAATTT | 60.575 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
6382 | 6854 | 6.128007 | CGTTCAGTAGCCATTTCCAGTTAATT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
6383 | 6855 | 5.354234 | CGTTCAGTAGCCATTTCCAGTTAAT | 59.646 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
6384 | 6856 | 4.693566 | CGTTCAGTAGCCATTTCCAGTTAA | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
6385 | 6857 | 4.250464 | CGTTCAGTAGCCATTTCCAGTTA | 58.750 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
6386 | 6858 | 3.074412 | CGTTCAGTAGCCATTTCCAGTT | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
6387 | 6859 | 2.038557 | ACGTTCAGTAGCCATTTCCAGT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
6388 | 6860 | 2.699954 | ACGTTCAGTAGCCATTTCCAG | 58.300 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
6389 | 6861 | 2.851263 | ACGTTCAGTAGCCATTTCCA | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6390 | 6862 | 4.694037 | AGTAAACGTTCAGTAGCCATTTCC | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
6391 | 6863 | 5.390567 | CCAGTAAACGTTCAGTAGCCATTTC | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
6392 | 6864 | 4.454504 | CCAGTAAACGTTCAGTAGCCATTT | 59.545 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
6393 | 6865 | 4.000988 | CCAGTAAACGTTCAGTAGCCATT | 58.999 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
6394 | 6866 | 3.259876 | TCCAGTAAACGTTCAGTAGCCAT | 59.740 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
6395 | 6867 | 2.629137 | TCCAGTAAACGTTCAGTAGCCA | 59.371 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
6396 | 6868 | 3.308438 | TCCAGTAAACGTTCAGTAGCC | 57.692 | 47.619 | 0.00 | 0.00 | 0.00 | 3.93 |
6397 | 6869 | 4.927425 | TCAATCCAGTAAACGTTCAGTAGC | 59.073 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
6398 | 6870 | 5.577164 | CCTCAATCCAGTAAACGTTCAGTAG | 59.423 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6399 | 6871 | 5.475719 | CCTCAATCCAGTAAACGTTCAGTA | 58.524 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
6400 | 6872 | 4.315803 | CCTCAATCCAGTAAACGTTCAGT | 58.684 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
6401 | 6873 | 3.125316 | GCCTCAATCCAGTAAACGTTCAG | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.