Multiple sequence alignment - TraesCS4D01G242700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G242700 chr4D 100.000 4746 0 0 1 4746 405320655 405325400 0.000000e+00 8765.0
1 TraesCS4D01G242700 chr4D 98.438 64 1 0 658 721 405321247 405321310 3.880000e-21 113.0
2 TraesCS4D01G242700 chr4D 98.438 64 1 0 593 656 405321312 405321375 3.880000e-21 113.0
3 TraesCS4D01G242700 chr4D 86.022 93 13 0 1001 1093 32219518 32219610 3.020000e-17 100.0
4 TraesCS4D01G242700 chr4B 91.853 1829 78 25 2124 3904 503564178 503565983 0.000000e+00 2486.0
5 TraesCS4D01G242700 chr4B 91.133 1342 75 11 661 1985 503560769 503562083 0.000000e+00 1779.0
6 TraesCS4D01G242700 chr4B 95.294 170 4 2 1971 2136 503563365 503563534 2.820000e-67 267.0
7 TraesCS4D01G242700 chr4B 83.333 282 45 2 3033 3313 46609064 46609344 4.710000e-65 259.0
8 TraesCS4D01G242700 chr4B 93.421 152 7 3 4435 4584 503567066 503567216 6.180000e-54 222.0
9 TraesCS4D01G242700 chr4B 90.833 120 10 1 4628 4746 503567217 503567336 4.920000e-35 159.0
10 TraesCS4D01G242700 chr4B 90.244 123 6 5 3971 4088 503565988 503566109 6.360000e-34 156.0
11 TraesCS4D01G242700 chr4B 95.385 65 3 0 4384 4448 503566215 503566279 2.340000e-18 104.0
12 TraesCS4D01G242700 chr4B 96.721 61 2 0 596 656 503560769 503560829 8.400000e-18 102.0
13 TraesCS4D01G242700 chr4A 94.564 975 29 17 2775 3748 63012648 63013599 0.000000e+00 1485.0
14 TraesCS4D01G242700 chr4A 86.658 787 50 21 1537 2272 63011405 63012187 0.000000e+00 821.0
15 TraesCS4D01G242700 chr4A 91.616 489 18 11 666 1145 63010659 63011133 0.000000e+00 654.0
16 TraesCS4D01G242700 chr4A 96.438 365 13 0 2269 2633 63012270 63012634 1.890000e-168 603.0
17 TraesCS4D01G242700 chr4A 88.066 243 23 3 1213 1451 63011158 63011398 2.800000e-72 283.0
18 TraesCS4D01G242700 chr4A 82.918 281 46 2 3034 3313 570478647 570478368 7.880000e-63 252.0
19 TraesCS4D01G242700 chr4A 97.826 92 2 0 4655 4746 63014213 63014304 4.920000e-35 159.0
20 TraesCS4D01G242700 chr4A 97.531 81 2 0 4384 4464 63013797 63013877 6.400000e-29 139.0
21 TraesCS4D01G242700 chr6D 95.533 582 24 2 2 582 414244375 414243795 0.000000e+00 929.0
22 TraesCS4D01G242700 chr6D 95.017 582 28 1 1 582 349901320 349900740 0.000000e+00 913.0
23 TraesCS4D01G242700 chr6D 93.792 596 33 4 1 594 366705957 366705364 0.000000e+00 893.0
24 TraesCS4D01G242700 chr1D 95.377 584 25 2 1 583 469538468 469537886 0.000000e+00 928.0
25 TraesCS4D01G242700 chr1D 94.845 582 29 1 1 582 454781823 454781243 0.000000e+00 907.0
26 TraesCS4D01G242700 chr1D 86.022 93 13 0 1001 1093 438368548 438368640 3.020000e-17 100.0
27 TraesCS4D01G242700 chr5D 95.197 583 27 1 1 583 358215656 358215075 0.000000e+00 920.0
28 TraesCS4D01G242700 chr5D 94.854 583 27 3 1 582 14028052 14028632 0.000000e+00 907.0
29 TraesCS4D01G242700 chr5D 94.619 223 11 1 4165 4386 164651515 164651737 1.260000e-90 344.0
30 TraesCS4D01G242700 chr5D 93.478 230 12 2 4167 4394 7044417 7044189 5.880000e-89 339.0
31 TraesCS4D01G242700 chr5D 85.616 292 42 0 3433 3724 479879083 479879374 1.660000e-79 307.0
32 TraesCS4D01G242700 chr5D 82.716 162 28 0 2799 2960 479878469 479878630 1.380000e-30 145.0
33 TraesCS4D01G242700 chr3D 94.388 588 29 4 1 586 475028636 475029221 0.000000e+00 900.0
34 TraesCS4D01G242700 chr3D 94.118 68 4 0 3904 3971 610998821 610998888 2.340000e-18 104.0
35 TraesCS4D01G242700 chr2D 94.655 580 30 1 1 580 619534272 619533694 0.000000e+00 898.0
36 TraesCS4D01G242700 chr2D 95.455 220 9 1 4167 4385 650216758 650216539 2.720000e-92 350.0
37 TraesCS4D01G242700 chr2D 84.667 300 46 0 3431 3730 154181725 154181426 2.780000e-77 300.0
38 TraesCS4D01G242700 chr2D 85.333 150 18 4 969 1115 154184155 154184007 8.230000e-33 152.0
39 TraesCS4D01G242700 chr6B 88.500 600 60 6 1 594 586664697 586665293 0.000000e+00 717.0
40 TraesCS4D01G242700 chr3B 86.935 597 69 5 3 594 401959927 401960519 0.000000e+00 662.0
41 TraesCS4D01G242700 chr2B 77.860 944 183 17 2797 3730 211625005 211624078 3.210000e-156 562.0
42 TraesCS4D01G242700 chr2B 84.564 149 17 6 969 1115 211627021 211626877 4.950000e-30 143.0
43 TraesCS4D01G242700 chr7D 95.000 220 11 0 4167 4386 578394690 578394909 3.520000e-91 346.0
44 TraesCS4D01G242700 chr7D 93.103 232 14 2 4154 4385 265001418 265001189 5.880000e-89 339.0
45 TraesCS4D01G242700 chr3A 93.833 227 13 1 4160 4385 207980078 207980304 1.640000e-89 340.0
46 TraesCS4D01G242700 chr3A 92.704 233 17 0 4165 4397 743837874 743838106 2.120000e-88 337.0
47 TraesCS4D01G242700 chr2A 93.805 226 14 0 4167 4392 141901246 141901021 1.640000e-89 340.0
48 TraesCS4D01G242700 chr2A 93.805 226 14 0 4167 4392 753534059 753533834 1.640000e-89 340.0
49 TraesCS4D01G242700 chr2A 84.424 321 47 2 3431 3748 146788573 146788893 3.570000e-81 313.0
50 TraesCS4D01G242700 chr2A 86.466 133 16 2 984 1115 146786061 146786192 1.380000e-30 145.0
51 TraesCS4D01G242700 chr2A 94.737 38 2 0 4578 4615 229987779 229987816 5.130000e-05 60.2
52 TraesCS4D01G242700 chr5A 85.763 295 42 0 3433 3727 598519700 598519994 3.570000e-81 313.0
53 TraesCS4D01G242700 chr5A 82.716 162 28 0 2799 2960 598519054 598519215 1.380000e-30 145.0
54 TraesCS4D01G242700 chr1B 82.624 282 47 2 3033 3313 594139888 594140168 1.020000e-61 248.0
55 TraesCS4D01G242700 chr1B 86.022 93 13 0 1001 1093 594138226 594138318 3.020000e-17 100.0
56 TraesCS4D01G242700 chr5B 82.716 162 28 0 2799 2960 587601053 587601214 1.380000e-30 145.0
57 TraesCS4D01G242700 chr1A 86.022 93 13 0 1001 1093 535062223 535062315 3.020000e-17 100.0
58 TraesCS4D01G242700 chr6A 78.947 133 19 7 1064 1190 481044600 481044729 1.090000e-11 82.4
59 TraesCS4D01G242700 chr6A 80.556 108 13 5 4439 4542 127876337 127876440 5.090000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G242700 chr4D 405320655 405325400 4745 False 8765.000 8765 100.000000 1 4746 1 chr4D.!!$F2 4745
1 TraesCS4D01G242700 chr4B 503560769 503567336 6567 False 659.375 2486 93.110500 596 4746 8 chr4B.!!$F2 4150
2 TraesCS4D01G242700 chr4A 63010659 63014304 3645 False 592.000 1485 93.242714 666 4746 7 chr4A.!!$F1 4080
3 TraesCS4D01G242700 chr6D 414243795 414244375 580 True 929.000 929 95.533000 2 582 1 chr6D.!!$R3 580
4 TraesCS4D01G242700 chr6D 349900740 349901320 580 True 913.000 913 95.017000 1 582 1 chr6D.!!$R1 581
5 TraesCS4D01G242700 chr6D 366705364 366705957 593 True 893.000 893 93.792000 1 594 1 chr6D.!!$R2 593
6 TraesCS4D01G242700 chr1D 469537886 469538468 582 True 928.000 928 95.377000 1 583 1 chr1D.!!$R2 582
7 TraesCS4D01G242700 chr1D 454781243 454781823 580 True 907.000 907 94.845000 1 582 1 chr1D.!!$R1 581
8 TraesCS4D01G242700 chr5D 358215075 358215656 581 True 920.000 920 95.197000 1 583 1 chr5D.!!$R2 582
9 TraesCS4D01G242700 chr5D 14028052 14028632 580 False 907.000 907 94.854000 1 582 1 chr5D.!!$F1 581
10 TraesCS4D01G242700 chr5D 479878469 479879374 905 False 226.000 307 84.166000 2799 3724 2 chr5D.!!$F3 925
11 TraesCS4D01G242700 chr3D 475028636 475029221 585 False 900.000 900 94.388000 1 586 1 chr3D.!!$F1 585
12 TraesCS4D01G242700 chr2D 619533694 619534272 578 True 898.000 898 94.655000 1 580 1 chr2D.!!$R1 579
13 TraesCS4D01G242700 chr2D 154181426 154184155 2729 True 226.000 300 85.000000 969 3730 2 chr2D.!!$R3 2761
14 TraesCS4D01G242700 chr6B 586664697 586665293 596 False 717.000 717 88.500000 1 594 1 chr6B.!!$F1 593
15 TraesCS4D01G242700 chr3B 401959927 401960519 592 False 662.000 662 86.935000 3 594 1 chr3B.!!$F1 591
16 TraesCS4D01G242700 chr2B 211624078 211627021 2943 True 352.500 562 81.212000 969 3730 2 chr2B.!!$R1 2761
17 TraesCS4D01G242700 chr2A 146786061 146788893 2832 False 229.000 313 85.445000 984 3748 2 chr2A.!!$F2 2764
18 TraesCS4D01G242700 chr5A 598519054 598519994 940 False 229.000 313 84.239500 2799 3727 2 chr5A.!!$F1 928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1000 0.033781 GAGCAGAGCAGAGCATAGGG 59.966 60.000 0.0 0.0 0.00 3.53 F
2256 4999 1.005215 ACCCTTTCATCCTTGAGGCAG 59.995 52.381 0.0 0.0 32.27 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 5196 0.17899 GGTCAAGGCAAAGGTCCACT 60.179 55.0 0.0 0.0 0.0 4.00 R
3961 7281 0.03213 TCCTCACAGACGAGCAACAC 59.968 55.0 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 4.526770 TCGAGGACGAGCGTGATA 57.473 55.556 0.00 0.00 43.81 2.15
138 139 3.385755 GTGAAAATATTGAGCCCCTGCAT 59.614 43.478 0.00 0.00 41.13 3.96
168 169 3.530535 GGCCACATTTGAACAGTTTGTT 58.469 40.909 0.00 0.00 44.37 2.83
180 181 2.223711 ACAGTTTGTTCAATTCCACCGC 60.224 45.455 0.00 0.00 0.00 5.68
527 539 2.586425 CATTGCCCTATCCAAACGGAT 58.414 47.619 0.00 0.00 45.62 4.18
571 583 3.726595 TTTAGGATCGCGCGGTGGG 62.727 63.158 31.69 0.24 0.00 4.61
594 606 2.104331 CCTTACGACGGCAGCGAT 59.896 61.111 0.00 0.00 0.00 4.58
639 651 3.461773 ACCGATGGTGGGAGCGAG 61.462 66.667 0.00 0.00 32.98 5.03
640 652 3.147595 CCGATGGTGGGAGCGAGA 61.148 66.667 0.00 0.00 0.00 4.04
641 653 2.105128 CGATGGTGGGAGCGAGAC 59.895 66.667 0.00 0.00 0.00 3.36
642 654 2.710902 CGATGGTGGGAGCGAGACA 61.711 63.158 0.00 0.00 0.00 3.41
643 655 1.826024 GATGGTGGGAGCGAGACAT 59.174 57.895 0.00 0.00 0.00 3.06
644 656 0.531532 GATGGTGGGAGCGAGACATG 60.532 60.000 0.00 0.00 0.00 3.21
645 657 1.976132 ATGGTGGGAGCGAGACATGG 61.976 60.000 0.00 0.00 0.00 3.66
646 658 2.660064 GGTGGGAGCGAGACATGGT 61.660 63.158 0.00 0.00 0.00 3.55
647 659 1.153549 GTGGGAGCGAGACATGGTC 60.154 63.158 0.00 0.00 0.00 4.02
650 662 4.823276 GAGCGAGACATGGTCCAG 57.177 61.111 0.00 0.00 32.18 3.86
651 663 1.142748 GAGCGAGACATGGTCCAGG 59.857 63.158 0.92 0.92 32.18 4.45
652 664 2.187946 GCGAGACATGGTCCAGGG 59.812 66.667 8.67 0.00 32.18 4.45
653 665 2.187946 CGAGACATGGTCCAGGGC 59.812 66.667 8.67 4.50 32.18 5.19
654 666 2.187946 GAGACATGGTCCAGGGCG 59.812 66.667 8.67 0.00 32.18 6.13
655 667 2.607750 AGACATGGTCCAGGGCGT 60.608 61.111 8.67 0.00 32.18 5.68
656 668 2.436646 GACATGGTCCAGGGCGTG 60.437 66.667 8.67 0.00 0.00 5.34
665 677 2.665000 CAGGGCGTGGATGTGAGT 59.335 61.111 0.00 0.00 0.00 3.41
666 678 1.742880 CAGGGCGTGGATGTGAGTG 60.743 63.158 0.00 0.00 0.00 3.51
667 679 2.436646 GGGCGTGGATGTGAGTGG 60.437 66.667 0.00 0.00 0.00 4.00
668 680 2.347490 GGCGTGGATGTGAGTGGT 59.653 61.111 0.00 0.00 0.00 4.16
669 681 2.034879 GGCGTGGATGTGAGTGGTG 61.035 63.158 0.00 0.00 0.00 4.17
670 682 1.005037 GCGTGGATGTGAGTGGTGA 60.005 57.895 0.00 0.00 0.00 4.02
671 683 1.016130 GCGTGGATGTGAGTGGTGAG 61.016 60.000 0.00 0.00 0.00 3.51
799 824 1.097547 CCATCCATCGCTTTCCGCTT 61.098 55.000 0.00 0.00 36.73 4.68
805 830 0.955428 ATCGCTTTCCGCTTGCTCAA 60.955 50.000 0.00 0.00 36.73 3.02
817 842 2.611518 CTTGCTCAAGAGTCCGGTAAG 58.388 52.381 0.00 0.00 40.79 2.34
847 872 1.142965 GCCTCGCTCCTTCTTCTCC 59.857 63.158 0.00 0.00 0.00 3.71
967 996 0.614294 ACAAGAGCAGAGCAGAGCAT 59.386 50.000 0.00 0.00 0.00 3.79
969 998 2.159071 ACAAGAGCAGAGCAGAGCATAG 60.159 50.000 0.00 0.00 0.00 2.23
970 999 1.042229 AGAGCAGAGCAGAGCATAGG 58.958 55.000 0.00 0.00 0.00 2.57
971 1000 0.033781 GAGCAGAGCAGAGCATAGGG 59.966 60.000 0.00 0.00 0.00 3.53
974 1003 1.702182 CAGAGCAGAGCATAGGGAGA 58.298 55.000 0.00 0.00 0.00 3.71
975 1004 1.614903 CAGAGCAGAGCATAGGGAGAG 59.385 57.143 0.00 0.00 0.00 3.20
976 1005 1.498576 AGAGCAGAGCATAGGGAGAGA 59.501 52.381 0.00 0.00 0.00 3.10
977 1006 1.888512 GAGCAGAGCATAGGGAGAGAG 59.111 57.143 0.00 0.00 0.00 3.20
978 1007 1.498576 AGCAGAGCATAGGGAGAGAGA 59.501 52.381 0.00 0.00 0.00 3.10
979 1008 1.888512 GCAGAGCATAGGGAGAGAGAG 59.111 57.143 0.00 0.00 0.00 3.20
983 1012 3.328931 AGAGCATAGGGAGAGAGAGAGAG 59.671 52.174 0.00 0.00 0.00 3.20
988 1017 3.421394 AGGGAGAGAGAGAGAGAGAGA 57.579 52.381 0.00 0.00 0.00 3.10
1132 1161 1.341581 GGTCAGCTACTCCTCCTCTGT 60.342 57.143 0.00 0.00 0.00 3.41
1148 1303 3.070018 CTCTGTTCCGATTTGTTGCTCT 58.930 45.455 0.00 0.00 0.00 4.09
1149 1304 3.067106 TCTGTTCCGATTTGTTGCTCTC 58.933 45.455 0.00 0.00 0.00 3.20
1150 1305 2.807967 CTGTTCCGATTTGTTGCTCTCA 59.192 45.455 0.00 0.00 0.00 3.27
1151 1306 3.411446 TGTTCCGATTTGTTGCTCTCAT 58.589 40.909 0.00 0.00 0.00 2.90
1152 1307 4.574892 TGTTCCGATTTGTTGCTCTCATA 58.425 39.130 0.00 0.00 0.00 2.15
1153 1308 4.631377 TGTTCCGATTTGTTGCTCTCATAG 59.369 41.667 0.00 0.00 0.00 2.23
1154 1309 4.471904 TCCGATTTGTTGCTCTCATAGT 57.528 40.909 0.00 0.00 0.00 2.12
1155 1310 4.433615 TCCGATTTGTTGCTCTCATAGTC 58.566 43.478 0.00 0.00 0.00 2.59
1173 1328 4.972751 AGTCTTTTCCTTTCAGAGCTCT 57.027 40.909 11.45 11.45 0.00 4.09
1202 1357 7.716799 AATACTCATGATCACCCTCTATCTC 57.283 40.000 0.00 0.00 0.00 2.75
1205 1360 4.928263 TCATGATCACCCTCTATCTCGAT 58.072 43.478 0.00 0.00 0.00 3.59
1339 2011 5.348164 GGTTGGATGATCCGGTTTAATTTG 58.652 41.667 7.03 0.00 40.17 2.32
1392 2067 1.317613 GCCTGTGATTTGGTGACACA 58.682 50.000 8.08 0.00 42.67 3.72
1453 2128 7.933215 AAACTCAAAACACTAGTACCAGTTT 57.067 32.000 0.00 0.00 35.87 2.66
1512 2254 6.421377 TTGCTTGTACTACTAACGATCGTA 57.579 37.500 23.04 4.53 0.00 3.43
1513 2255 5.799960 TGCTTGTACTACTAACGATCGTAC 58.200 41.667 23.04 14.34 0.00 3.67
1530 2272 7.074502 CGATCGTACTCCTACTTTACAATACC 58.925 42.308 7.03 0.00 0.00 2.73
1541 2283 8.294577 CCTACTTTACAATACCAAAACCTGAAC 58.705 37.037 0.00 0.00 0.00 3.18
1548 2290 8.936070 ACAATACCAAAACCTGAACTTTTTAC 57.064 30.769 0.00 0.00 0.00 2.01
1583 2325 4.280019 ACCTCGGTTGGGGTTGCC 62.280 66.667 0.00 0.00 30.80 4.52
1652 2394 2.032071 CCGAGGGCCTTGTTCGTT 59.968 61.111 19.53 0.00 32.73 3.85
1697 2439 2.147387 GGTGAGGACGGGGGCATAT 61.147 63.158 0.00 0.00 0.00 1.78
1788 2535 3.002791 CACTACACAGGTACCATGCTTG 58.997 50.000 15.94 5.55 0.00 4.01
1850 2597 5.705905 AGCACCAACTATTTAGAAGTCAACC 59.294 40.000 0.00 0.00 0.00 3.77
1851 2598 5.705905 GCACCAACTATTTAGAAGTCAACCT 59.294 40.000 0.00 0.00 0.00 3.50
1907 2680 7.315142 TGATGAAATTTGGTAGTTGCAGATTC 58.685 34.615 0.00 0.00 0.00 2.52
2221 4964 3.329386 TCATGCTGAGTTTAGTGCTCAC 58.671 45.455 0.00 0.00 37.98 3.51
2256 4999 1.005215 ACCCTTTCATCCTTGAGGCAG 59.995 52.381 0.00 0.00 32.27 4.85
2366 5196 2.368548 TGCTGCAGTTGGAAGAGAAGTA 59.631 45.455 16.64 0.00 0.00 2.24
2417 5247 2.591715 GCGGACAACTGCACTGGT 60.592 61.111 0.00 0.00 46.56 4.00
2426 5256 1.673665 CTGCACTGGTCTCCAAGGC 60.674 63.158 0.00 4.95 34.54 4.35
2561 5394 4.819105 TCCTTCACCACAGGTACTATTG 57.181 45.455 0.00 0.00 36.02 1.90
2563 5396 3.055094 CCTTCACCACAGGTACTATTGCT 60.055 47.826 0.00 0.00 36.02 3.91
2619 5452 8.874816 GCTCTGTCCTAAGTCAAACTTTATAAG 58.125 37.037 0.00 0.00 39.51 1.73
2711 5857 8.421002 TCTCAATGATGAATCTAACGGTATTGA 58.579 33.333 0.00 0.00 34.49 2.57
2722 5868 7.781548 TCTAACGGTATTGATAAGAAAAGGC 57.218 36.000 0.00 0.00 0.00 4.35
2735 5890 5.428184 AAGAAAAGGCTAGTATGCAGAGT 57.572 39.130 0.00 0.00 34.04 3.24
2743 5898 8.894768 AAGGCTAGTATGCAGAGTAATAAAAG 57.105 34.615 0.00 0.00 34.04 2.27
2745 5900 6.128795 GGCTAGTATGCAGAGTAATAAAAGCG 60.129 42.308 0.00 0.00 34.04 4.68
2746 5901 5.659048 AGTATGCAGAGTAATAAAAGCGC 57.341 39.130 0.00 0.00 0.00 5.92
2747 5902 5.360591 AGTATGCAGAGTAATAAAAGCGCT 58.639 37.500 2.64 2.64 0.00 5.92
2748 5903 4.542662 ATGCAGAGTAATAAAAGCGCTG 57.457 40.909 12.58 0.00 34.08 5.18
2753 5908 3.197983 AGAGTAATAAAAGCGCTGGGAGT 59.802 43.478 12.58 0.00 0.00 3.85
2754 5909 3.939592 GAGTAATAAAAGCGCTGGGAGTT 59.060 43.478 12.58 5.59 0.00 3.01
2755 5910 4.332828 AGTAATAAAAGCGCTGGGAGTTT 58.667 39.130 12.58 10.24 0.00 2.66
2759 5914 0.465460 AAAGCGCTGGGAGTTTCACA 60.465 50.000 12.58 0.00 0.00 3.58
2763 5918 1.401539 GCGCTGGGAGTTTCACATTTC 60.402 52.381 0.00 0.00 0.00 2.17
2770 5925 3.230976 GGAGTTTCACATTTCCCTGGTT 58.769 45.455 0.00 0.00 0.00 3.67
3317 6620 2.159476 GCAGTTCGTCGACTGGTATGTA 60.159 50.000 14.70 0.00 45.59 2.29
3326 6629 5.049612 CGTCGACTGGTATGTACATCTATGT 60.050 44.000 12.68 7.82 44.48 2.29
3336 6645 9.395707 GGTATGTACATCTATGTAGTTTCTTCG 57.604 37.037 12.68 0.00 43.32 3.79
3365 6674 4.183865 TCACCTGACATTGAGATTTAGCG 58.816 43.478 0.00 0.00 0.00 4.26
3393 6702 4.325028 TGCAATGCATGACTCTGTTTTT 57.675 36.364 2.72 0.00 31.71 1.94
3397 6706 6.930164 TGCAATGCATGACTCTGTTTTTAATT 59.070 30.769 2.72 0.00 31.71 1.40
3398 6707 7.095565 TGCAATGCATGACTCTGTTTTTAATTG 60.096 33.333 2.72 0.00 31.71 2.32
3413 6722 7.118971 TGTTTTTAATTGTGTTCTTGCTTTGCT 59.881 29.630 0.00 0.00 0.00 3.91
3748 7057 2.792890 CGAAGGCGATGAGTACTGAGTG 60.793 54.545 0.00 0.00 40.82 3.51
3756 7065 4.097135 CGATGAGTACTGAGTGGATCAAGT 59.903 45.833 0.00 0.00 37.52 3.16
3757 7066 4.790765 TGAGTACTGAGTGGATCAAGTG 57.209 45.455 0.00 0.00 37.52 3.16
3760 7069 2.175878 ACTGAGTGGATCAAGTGTGC 57.824 50.000 0.00 0.00 37.52 4.57
3762 7071 0.950555 TGAGTGGATCAAGTGTGCGC 60.951 55.000 0.00 0.00 34.02 6.09
3763 7072 0.671781 GAGTGGATCAAGTGTGCGCT 60.672 55.000 9.73 0.00 0.00 5.92
3765 7074 0.671781 GTGGATCAAGTGTGCGCTCT 60.672 55.000 9.73 1.27 0.00 4.09
3770 7084 3.375299 GGATCAAGTGTGCGCTCTTATTT 59.625 43.478 13.75 2.90 0.00 1.40
3821 7138 4.503714 TGTTCTTCTCTGTCCCTGTTTT 57.496 40.909 0.00 0.00 0.00 2.43
3822 7139 4.199310 TGTTCTTCTCTGTCCCTGTTTTG 58.801 43.478 0.00 0.00 0.00 2.44
3823 7140 2.851195 TCTTCTCTGTCCCTGTTTTGC 58.149 47.619 0.00 0.00 0.00 3.68
3871 7191 7.067615 TGGTTAGCAGAGTACAAAAATTGTCAA 59.932 33.333 0.00 0.00 44.12 3.18
3881 7201 6.976636 ACAAAAATTGTCAAATTGGTTCGT 57.023 29.167 11.49 0.00 40.56 3.85
3886 7206 2.020720 TGTCAAATTGGTTCGTGTGCT 58.979 42.857 0.00 0.00 0.00 4.40
3888 7208 2.032799 GTCAAATTGGTTCGTGTGCTCA 59.967 45.455 0.00 0.00 0.00 4.26
3894 7214 1.299926 GTTCGTGTGCTCAGACGGT 60.300 57.895 17.39 0.00 46.37 4.83
3904 7224 2.047274 CAGACGGTTCGGTGCCAT 60.047 61.111 0.00 0.00 0.00 4.40
3905 7225 2.100631 CAGACGGTTCGGTGCCATC 61.101 63.158 0.00 0.00 0.00 3.51
3906 7226 2.047655 GACGGTTCGGTGCCATCA 60.048 61.111 0.00 0.00 0.00 3.07
3907 7227 2.047274 ACGGTTCGGTGCCATCAG 60.047 61.111 0.00 0.00 0.00 2.90
3908 7228 2.264480 CGGTTCGGTGCCATCAGA 59.736 61.111 0.00 0.00 0.00 3.27
3909 7229 1.375396 CGGTTCGGTGCCATCAGAA 60.375 57.895 0.00 0.00 0.00 3.02
3910 7230 0.744414 CGGTTCGGTGCCATCAGAAT 60.744 55.000 0.00 0.00 0.00 2.40
3911 7231 1.463674 GGTTCGGTGCCATCAGAATT 58.536 50.000 0.00 0.00 0.00 2.17
3912 7232 1.818674 GGTTCGGTGCCATCAGAATTT 59.181 47.619 0.00 0.00 0.00 1.82
3913 7233 2.415893 GGTTCGGTGCCATCAGAATTTG 60.416 50.000 0.00 0.00 0.00 2.32
3914 7234 0.810648 TCGGTGCCATCAGAATTTGC 59.189 50.000 0.00 0.00 0.00 3.68
3915 7235 0.179129 CGGTGCCATCAGAATTTGCC 60.179 55.000 0.00 0.00 0.00 4.52
3916 7236 0.896923 GGTGCCATCAGAATTTGCCA 59.103 50.000 0.00 0.00 0.00 4.92
3917 7237 1.275856 GGTGCCATCAGAATTTGCCAA 59.724 47.619 0.00 0.00 0.00 4.52
3918 7238 2.613691 GTGCCATCAGAATTTGCCAAG 58.386 47.619 0.00 0.00 0.00 3.61
3919 7239 2.028748 GTGCCATCAGAATTTGCCAAGT 60.029 45.455 0.00 0.00 0.00 3.16
3920 7240 2.028839 TGCCATCAGAATTTGCCAAGTG 60.029 45.455 0.00 0.00 0.00 3.16
3921 7241 2.675889 GCCATCAGAATTTGCCAAGTGG 60.676 50.000 0.00 0.00 38.53 4.00
3922 7242 2.827322 CCATCAGAATTTGCCAAGTGGA 59.173 45.455 0.18 0.00 37.39 4.02
3923 7243 3.119245 CCATCAGAATTTGCCAAGTGGAG 60.119 47.826 0.18 0.00 37.39 3.86
3924 7244 2.517959 TCAGAATTTGCCAAGTGGAGG 58.482 47.619 0.18 0.00 37.39 4.30
3925 7245 2.158475 TCAGAATTTGCCAAGTGGAGGT 60.158 45.455 0.18 0.00 37.39 3.85
3926 7246 2.629617 CAGAATTTGCCAAGTGGAGGTT 59.370 45.455 0.18 0.00 37.39 3.50
3927 7247 3.070015 CAGAATTTGCCAAGTGGAGGTTT 59.930 43.478 0.18 0.00 37.39 3.27
3928 7248 4.280677 CAGAATTTGCCAAGTGGAGGTTTA 59.719 41.667 0.18 0.00 37.39 2.01
3929 7249 4.280929 AGAATTTGCCAAGTGGAGGTTTAC 59.719 41.667 0.18 0.00 37.39 2.01
3930 7250 1.600023 TTGCCAAGTGGAGGTTTACG 58.400 50.000 0.18 0.00 37.39 3.18
3931 7251 0.470766 TGCCAAGTGGAGGTTTACGT 59.529 50.000 0.18 0.00 37.39 3.57
3932 7252 1.693062 TGCCAAGTGGAGGTTTACGTA 59.307 47.619 0.18 0.00 37.39 3.57
3933 7253 2.104451 TGCCAAGTGGAGGTTTACGTAA 59.896 45.455 3.29 3.29 37.39 3.18
3934 7254 3.140623 GCCAAGTGGAGGTTTACGTAAA 58.859 45.455 16.59 16.59 37.39 2.01
3935 7255 3.565063 GCCAAGTGGAGGTTTACGTAAAA 59.435 43.478 21.67 3.84 37.39 1.52
3936 7256 4.555313 GCCAAGTGGAGGTTTACGTAAAAC 60.555 45.833 25.24 25.24 41.36 2.43
3937 7257 4.818005 CCAAGTGGAGGTTTACGTAAAACT 59.182 41.667 33.01 33.01 45.27 2.66
3964 7284 6.099579 CGTAAGTCTACGTATGTGTAGTGT 57.900 41.667 0.00 0.00 44.79 3.55
3965 7285 6.537566 CGTAAGTCTACGTATGTGTAGTGTT 58.462 40.000 0.00 4.58 44.79 3.32
3966 7286 6.463890 CGTAAGTCTACGTATGTGTAGTGTTG 59.536 42.308 0.00 0.00 44.79 3.33
3967 7287 4.730657 AGTCTACGTATGTGTAGTGTTGC 58.269 43.478 0.00 0.00 42.01 4.17
3968 7288 4.458295 AGTCTACGTATGTGTAGTGTTGCT 59.542 41.667 0.00 0.00 42.01 3.91
3969 7289 4.792189 GTCTACGTATGTGTAGTGTTGCTC 59.208 45.833 0.00 0.00 42.01 4.26
3981 7301 0.750249 TGTTGCTCGTCTGTGAGGAA 59.250 50.000 3.45 3.45 42.96 3.36
4032 7352 9.284594 TGAACGAAGAGTTTTTGTAAGAAATTG 57.715 29.630 0.00 0.00 44.35 2.32
4033 7353 7.679659 ACGAAGAGTTTTTGTAAGAAATTGC 57.320 32.000 0.00 0.00 0.00 3.56
4037 7363 6.515832 AGAGTTTTTGTAAGAAATTGCAGGG 58.484 36.000 0.00 0.00 0.00 4.45
4055 7381 4.559502 GCAGGGATGACTTCCTTTGTTTTC 60.560 45.833 7.28 0.00 44.75 2.29
4097 7451 7.690228 TGTAGACCATACGATGCAAATTTTAC 58.310 34.615 0.00 0.00 0.00 2.01
4098 7452 6.131544 AGACCATACGATGCAAATTTTACC 57.868 37.500 0.00 0.00 0.00 2.85
4165 7520 1.537202 AGCTGCCTTGTCGATTTTCAC 59.463 47.619 0.00 0.00 0.00 3.18
4166 7521 1.537202 GCTGCCTTGTCGATTTTCACT 59.463 47.619 0.00 0.00 0.00 3.41
4167 7522 2.742053 GCTGCCTTGTCGATTTTCACTA 59.258 45.455 0.00 0.00 0.00 2.74
4168 7523 3.424962 GCTGCCTTGTCGATTTTCACTAC 60.425 47.826 0.00 0.00 0.00 2.73
4169 7524 3.997021 CTGCCTTGTCGATTTTCACTACT 59.003 43.478 0.00 0.00 0.00 2.57
4170 7525 5.142061 TGCCTTGTCGATTTTCACTACTA 57.858 39.130 0.00 0.00 0.00 1.82
4171 7526 5.730550 TGCCTTGTCGATTTTCACTACTAT 58.269 37.500 0.00 0.00 0.00 2.12
4172 7527 5.810587 TGCCTTGTCGATTTTCACTACTATC 59.189 40.000 0.00 0.00 0.00 2.08
4173 7528 6.043411 GCCTTGTCGATTTTCACTACTATCT 58.957 40.000 0.00 0.00 0.00 1.98
4174 7529 6.199342 GCCTTGTCGATTTTCACTACTATCTC 59.801 42.308 0.00 0.00 0.00 2.75
4175 7530 7.484975 CCTTGTCGATTTTCACTACTATCTCT 58.515 38.462 0.00 0.00 0.00 3.10
4176 7531 7.646130 CCTTGTCGATTTTCACTACTATCTCTC 59.354 40.741 0.00 0.00 0.00 3.20
4177 7532 7.867305 TGTCGATTTTCACTACTATCTCTCT 57.133 36.000 0.00 0.00 0.00 3.10
4178 7533 7.921787 TGTCGATTTTCACTACTATCTCTCTC 58.078 38.462 0.00 0.00 0.00 3.20
4179 7534 7.771361 TGTCGATTTTCACTACTATCTCTCTCT 59.229 37.037 0.00 0.00 0.00 3.10
4180 7535 8.280497 GTCGATTTTCACTACTATCTCTCTCTC 58.720 40.741 0.00 0.00 0.00 3.20
4181 7536 7.988028 TCGATTTTCACTACTATCTCTCTCTCA 59.012 37.037 0.00 0.00 0.00 3.27
4182 7537 8.282592 CGATTTTCACTACTATCTCTCTCTCAG 58.717 40.741 0.00 0.00 0.00 3.35
4183 7538 6.935741 TTTCACTACTATCTCTCTCTCAGC 57.064 41.667 0.00 0.00 0.00 4.26
4184 7539 5.887214 TCACTACTATCTCTCTCTCAGCT 57.113 43.478 0.00 0.00 0.00 4.24
4185 7540 6.247229 TCACTACTATCTCTCTCTCAGCTT 57.753 41.667 0.00 0.00 0.00 3.74
4186 7541 7.368198 TCACTACTATCTCTCTCTCAGCTTA 57.632 40.000 0.00 0.00 0.00 3.09
4187 7542 7.214381 TCACTACTATCTCTCTCTCAGCTTAC 58.786 42.308 0.00 0.00 0.00 2.34
4188 7543 6.989759 CACTACTATCTCTCTCTCAGCTTACA 59.010 42.308 0.00 0.00 0.00 2.41
4189 7544 7.171508 CACTACTATCTCTCTCTCAGCTTACAG 59.828 44.444 0.00 0.00 0.00 2.74
4190 7545 5.376625 ACTATCTCTCTCTCAGCTTACAGG 58.623 45.833 0.00 0.00 0.00 4.00
4191 7546 3.011566 TCTCTCTCTCAGCTTACAGGG 57.988 52.381 0.00 0.00 0.00 4.45
4192 7547 1.408702 CTCTCTCTCAGCTTACAGGGC 59.591 57.143 0.00 0.00 0.00 5.19
4193 7548 0.102120 CTCTCTCAGCTTACAGGGCG 59.898 60.000 0.00 0.00 34.52 6.13
4194 7549 0.612174 TCTCTCAGCTTACAGGGCGT 60.612 55.000 0.00 0.00 34.52 5.68
4195 7550 0.459237 CTCTCAGCTTACAGGGCGTG 60.459 60.000 5.50 5.50 34.52 5.34
4196 7551 2.047274 TCAGCTTACAGGGCGTGC 60.047 61.111 7.17 0.00 34.52 5.34
4197 7552 3.490759 CAGCTTACAGGGCGTGCG 61.491 66.667 7.17 0.00 34.52 5.34
4201 7556 3.975083 CTTACAGGGCGTGCGCGTA 62.975 63.158 22.18 0.00 43.06 4.42
4202 7557 3.359515 TTACAGGGCGTGCGCGTAT 62.360 57.895 22.18 4.49 43.06 3.06
4203 7558 3.761445 TACAGGGCGTGCGCGTATC 62.761 63.158 22.18 11.01 43.06 2.24
4207 7562 4.274700 GGCGTGCGCGTATCCCTA 62.275 66.667 22.18 0.00 43.06 3.53
4208 7563 2.729862 GCGTGCGCGTATCCCTAG 60.730 66.667 22.18 0.00 40.81 3.02
4209 7564 2.050351 CGTGCGCGTATCCCTAGG 60.050 66.667 12.43 0.06 0.00 3.02
4210 7565 2.842256 CGTGCGCGTATCCCTAGGT 61.842 63.158 12.43 0.00 0.00 3.08
4211 7566 1.007618 GTGCGCGTATCCCTAGGTC 60.008 63.158 8.43 0.00 0.00 3.85
4212 7567 1.454295 TGCGCGTATCCCTAGGTCA 60.454 57.895 8.43 0.00 0.00 4.02
4213 7568 0.826256 TGCGCGTATCCCTAGGTCAT 60.826 55.000 8.43 1.72 0.00 3.06
4214 7569 0.109226 GCGCGTATCCCTAGGTCATC 60.109 60.000 8.43 0.00 0.00 2.92
4215 7570 1.244816 CGCGTATCCCTAGGTCATCA 58.755 55.000 8.29 0.00 0.00 3.07
4216 7571 1.611977 CGCGTATCCCTAGGTCATCAA 59.388 52.381 8.29 0.00 0.00 2.57
4217 7572 2.231478 CGCGTATCCCTAGGTCATCAAT 59.769 50.000 8.29 0.00 0.00 2.57
4218 7573 3.306088 CGCGTATCCCTAGGTCATCAATT 60.306 47.826 8.29 0.00 0.00 2.32
4219 7574 4.642429 GCGTATCCCTAGGTCATCAATTT 58.358 43.478 8.29 0.00 0.00 1.82
4220 7575 4.452455 GCGTATCCCTAGGTCATCAATTTG 59.548 45.833 8.29 0.00 0.00 2.32
4221 7576 5.741964 GCGTATCCCTAGGTCATCAATTTGA 60.742 44.000 8.29 0.75 0.00 2.69
4222 7577 5.696724 CGTATCCCTAGGTCATCAATTTGAC 59.303 44.000 8.29 2.20 44.27 3.18
4223 7578 5.983333 ATCCCTAGGTCATCAATTTGACT 57.017 39.130 8.29 0.00 44.39 3.41
4224 7579 7.255836 CGTATCCCTAGGTCATCAATTTGACTA 60.256 40.741 8.29 0.00 44.39 2.59
4225 7580 6.884472 TCCCTAGGTCATCAATTTGACTAA 57.116 37.500 8.29 0.00 44.39 2.24
4226 7581 7.451731 TCCCTAGGTCATCAATTTGACTAAT 57.548 36.000 8.29 1.19 44.39 1.73
4227 7582 7.509546 TCCCTAGGTCATCAATTTGACTAATC 58.490 38.462 8.29 0.00 44.39 1.75
4228 7583 7.348274 TCCCTAGGTCATCAATTTGACTAATCT 59.652 37.037 8.29 0.00 44.39 2.40
4229 7584 8.651389 CCCTAGGTCATCAATTTGACTAATCTA 58.349 37.037 8.29 0.27 44.39 1.98
4275 7630 7.576861 AAATATACCAACATAAACTTCGGGG 57.423 36.000 0.00 0.00 0.00 5.73
4276 7631 2.963599 ACCAACATAAACTTCGGGGT 57.036 45.000 0.00 0.00 0.00 4.95
4277 7632 3.232720 ACCAACATAAACTTCGGGGTT 57.767 42.857 0.00 0.00 0.00 4.11
4278 7633 3.568443 ACCAACATAAACTTCGGGGTTT 58.432 40.909 10.42 10.42 41.51 3.27
4279 7634 3.570975 ACCAACATAAACTTCGGGGTTTC 59.429 43.478 9.25 0.00 39.66 2.78
4280 7635 3.824443 CCAACATAAACTTCGGGGTTTCT 59.176 43.478 9.25 0.00 39.66 2.52
4281 7636 5.005094 CCAACATAAACTTCGGGGTTTCTA 58.995 41.667 9.25 0.00 39.66 2.10
4282 7637 5.106436 CCAACATAAACTTCGGGGTTTCTAC 60.106 44.000 9.25 0.00 39.66 2.59
4283 7638 5.494390 ACATAAACTTCGGGGTTTCTACT 57.506 39.130 9.25 0.00 39.66 2.57
4284 7639 5.872963 ACATAAACTTCGGGGTTTCTACTT 58.127 37.500 9.25 0.00 39.66 2.24
4285 7640 6.301486 ACATAAACTTCGGGGTTTCTACTTT 58.699 36.000 9.25 0.00 39.66 2.66
4286 7641 6.429078 ACATAAACTTCGGGGTTTCTACTTTC 59.571 38.462 9.25 0.00 39.66 2.62
4287 7642 4.426736 AACTTCGGGGTTTCTACTTTCA 57.573 40.909 0.00 0.00 0.00 2.69
4288 7643 4.426736 ACTTCGGGGTTTCTACTTTCAA 57.573 40.909 0.00 0.00 0.00 2.69
4289 7644 4.784177 ACTTCGGGGTTTCTACTTTCAAA 58.216 39.130 0.00 0.00 0.00 2.69
4290 7645 5.195185 ACTTCGGGGTTTCTACTTTCAAAA 58.805 37.500 0.00 0.00 0.00 2.44
4291 7646 5.298527 ACTTCGGGGTTTCTACTTTCAAAAG 59.701 40.000 0.97 0.97 41.73 2.27
4292 7647 4.139038 TCGGGGTTTCTACTTTCAAAAGG 58.861 43.478 7.37 0.00 40.31 3.11
4293 7648 3.887110 CGGGGTTTCTACTTTCAAAAGGT 59.113 43.478 7.37 0.00 40.31 3.50
4294 7649 5.065235 CGGGGTTTCTACTTTCAAAAGGTA 58.935 41.667 7.37 0.00 40.31 3.08
4295 7650 5.708697 CGGGGTTTCTACTTTCAAAAGGTAT 59.291 40.000 7.37 0.00 40.31 2.73
4296 7651 6.880529 CGGGGTTTCTACTTTCAAAAGGTATA 59.119 38.462 7.37 0.00 40.31 1.47
4297 7652 7.391275 CGGGGTTTCTACTTTCAAAAGGTATAA 59.609 37.037 7.37 0.00 40.31 0.98
4298 7653 9.251440 GGGGTTTCTACTTTCAAAAGGTATAAT 57.749 33.333 7.37 0.00 40.31 1.28
4346 7701 9.689501 TTAGGGTAATAAAATTGACAACCTAGG 57.310 33.333 7.41 7.41 0.00 3.02
4347 7702 7.705700 AGGGTAATAAAATTGACAACCTAGGT 58.294 34.615 9.21 9.21 0.00 3.08
4348 7703 8.838741 AGGGTAATAAAATTGACAACCTAGGTA 58.161 33.333 16.67 0.00 0.00 3.08
4349 7704 9.636789 GGGTAATAAAATTGACAACCTAGGTAT 57.363 33.333 16.67 6.57 0.00 2.73
4353 7708 6.673154 AAAATTGACAACCTAGGTATACGC 57.327 37.500 16.67 4.11 0.00 4.42
4354 7709 3.425577 TTGACAACCTAGGTATACGCG 57.574 47.619 16.67 3.53 0.00 6.01
4355 7710 1.066002 TGACAACCTAGGTATACGCGC 59.934 52.381 16.67 0.00 0.00 6.86
4356 7711 1.066002 GACAACCTAGGTATACGCGCA 59.934 52.381 16.67 0.00 0.00 6.09
4357 7712 1.066605 ACAACCTAGGTATACGCGCAG 59.933 52.381 16.67 2.42 0.00 5.18
4358 7713 0.672342 AACCTAGGTATACGCGCAGG 59.328 55.000 16.67 6.39 0.00 4.85
4359 7714 0.179009 ACCTAGGTATACGCGCAGGA 60.179 55.000 14.41 0.00 0.00 3.86
4360 7715 0.240411 CCTAGGTATACGCGCAGGAC 59.760 60.000 5.73 0.00 0.00 3.85
4361 7716 1.236628 CTAGGTATACGCGCAGGACT 58.763 55.000 5.73 1.68 0.00 3.85
4362 7717 1.607628 CTAGGTATACGCGCAGGACTT 59.392 52.381 5.73 0.00 0.00 3.01
4363 7718 0.102481 AGGTATACGCGCAGGACTTG 59.898 55.000 5.73 0.00 0.00 3.16
4364 7719 0.179119 GGTATACGCGCAGGACTTGT 60.179 55.000 5.73 0.00 0.00 3.16
4365 7720 1.066002 GGTATACGCGCAGGACTTGTA 59.934 52.381 5.73 0.00 0.00 2.41
4366 7721 2.480073 GGTATACGCGCAGGACTTGTAA 60.480 50.000 5.73 0.00 0.00 2.41
4367 7722 2.373540 ATACGCGCAGGACTTGTAAA 57.626 45.000 5.73 0.00 0.00 2.01
4368 7723 1.421382 TACGCGCAGGACTTGTAAAC 58.579 50.000 5.73 0.00 0.00 2.01
4369 7724 0.249741 ACGCGCAGGACTTGTAAACT 60.250 50.000 5.73 0.00 0.00 2.66
4370 7725 0.163788 CGCGCAGGACTTGTAAACTG 59.836 55.000 8.75 0.00 0.00 3.16
4371 7726 1.508632 GCGCAGGACTTGTAAACTGA 58.491 50.000 0.30 0.00 32.86 3.41
4372 7727 1.871039 GCGCAGGACTTGTAAACTGAA 59.129 47.619 0.30 0.00 32.86 3.02
4373 7728 2.289547 GCGCAGGACTTGTAAACTGAAA 59.710 45.455 0.30 0.00 32.86 2.69
4374 7729 3.242936 GCGCAGGACTTGTAAACTGAAAA 60.243 43.478 0.30 0.00 32.86 2.29
4375 7730 4.527564 CGCAGGACTTGTAAACTGAAAAG 58.472 43.478 0.00 0.00 32.86 2.27
4376 7731 4.554723 CGCAGGACTTGTAAACTGAAAAGG 60.555 45.833 0.00 0.00 32.86 3.11
4377 7732 4.578928 GCAGGACTTGTAAACTGAAAAGGA 59.421 41.667 0.00 0.00 32.86 3.36
4378 7733 5.278022 GCAGGACTTGTAAACTGAAAAGGAG 60.278 44.000 0.00 0.00 32.86 3.69
4379 7734 5.239525 CAGGACTTGTAAACTGAAAAGGAGG 59.760 44.000 0.00 0.00 32.86 4.30
4380 7735 5.104067 AGGACTTGTAAACTGAAAAGGAGGT 60.104 40.000 0.00 0.00 0.00 3.85
4381 7736 6.100714 AGGACTTGTAAACTGAAAAGGAGGTA 59.899 38.462 0.00 0.00 0.00 3.08
4382 7737 6.427242 GGACTTGTAAACTGAAAAGGAGGTAG 59.573 42.308 0.00 0.00 0.00 3.18
4471 8808 2.154462 CCAGATCCAAAGTCGCAAAGT 58.846 47.619 0.00 0.00 0.00 2.66
4596 8935 4.157958 GAGACGACGCGCGGTAGT 62.158 66.667 35.22 28.28 46.49 2.73
4616 8955 1.089112 CAGAAGCGCATCCAACATGA 58.911 50.000 11.47 0.00 0.00 3.07
4617 8956 1.063616 CAGAAGCGCATCCAACATGAG 59.936 52.381 11.47 0.00 0.00 2.90
4618 8957 1.065926 AGAAGCGCATCCAACATGAGA 60.066 47.619 11.47 0.00 0.00 3.27
4619 8958 1.063174 GAAGCGCATCCAACATGAGAC 59.937 52.381 11.47 0.00 0.00 3.36
4620 8959 0.745845 AGCGCATCCAACATGAGACC 60.746 55.000 11.47 0.00 0.00 3.85
4621 8960 1.026182 GCGCATCCAACATGAGACCA 61.026 55.000 0.30 0.00 0.00 4.02
4622 8961 1.452110 CGCATCCAACATGAGACCAA 58.548 50.000 0.00 0.00 0.00 3.67
4623 8962 1.399440 CGCATCCAACATGAGACCAAG 59.601 52.381 0.00 0.00 0.00 3.61
4624 8963 1.133790 GCATCCAACATGAGACCAAGC 59.866 52.381 0.00 0.00 0.00 4.01
4625 8964 1.747355 CATCCAACATGAGACCAAGCC 59.253 52.381 0.00 0.00 0.00 4.35
4626 8965 0.321564 TCCAACATGAGACCAAGCCG 60.322 55.000 0.00 0.00 0.00 5.52
4627 8966 0.321564 CCAACATGAGACCAAGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
4628 8967 0.798776 CAACATGAGACCAAGCCGAC 59.201 55.000 0.00 0.00 0.00 4.79
4629 8968 0.321653 AACATGAGACCAAGCCGACC 60.322 55.000 0.00 0.00 0.00 4.79
4630 8969 1.296392 CATGAGACCAAGCCGACCA 59.704 57.895 0.00 0.00 0.00 4.02
4631 8970 1.021390 CATGAGACCAAGCCGACCAC 61.021 60.000 0.00 0.00 0.00 4.16
4632 8971 1.480212 ATGAGACCAAGCCGACCACA 61.480 55.000 0.00 0.00 0.00 4.17
4633 8972 1.070786 GAGACCAAGCCGACCACAA 59.929 57.895 0.00 0.00 0.00 3.33
4634 8973 0.321653 GAGACCAAGCCGACCACAAT 60.322 55.000 0.00 0.00 0.00 2.71
4635 8974 0.321653 AGACCAAGCCGACCACAATC 60.322 55.000 0.00 0.00 0.00 2.67
4636 8975 1.303317 ACCAAGCCGACCACAATCC 60.303 57.895 0.00 0.00 0.00 3.01
4637 8976 1.002134 CCAAGCCGACCACAATCCT 60.002 57.895 0.00 0.00 0.00 3.24
4638 8977 1.308069 CCAAGCCGACCACAATCCTG 61.308 60.000 0.00 0.00 0.00 3.86
4639 8978 1.675641 AAGCCGACCACAATCCTGC 60.676 57.895 0.00 0.00 0.00 4.85
4640 8979 2.045926 GCCGACCACAATCCTGCT 60.046 61.111 0.00 0.00 0.00 4.24
4641 8980 2.401766 GCCGACCACAATCCTGCTG 61.402 63.158 0.00 0.00 0.00 4.41
4642 8981 2.401766 CCGACCACAATCCTGCTGC 61.402 63.158 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 5.941555 AATCCTTGGTCGAAGATACTCTT 57.058 39.130 0.00 0.00 40.67 2.85
138 139 0.893270 CAAATGTGGCCGGGTCTTGA 60.893 55.000 2.18 0.00 0.00 3.02
168 169 1.089481 GCATCTCGCGGTGGAATTGA 61.089 55.000 6.13 0.00 0.00 2.57
473 484 1.003839 GTGTCCTGGAATGCGGTGA 60.004 57.895 0.00 0.00 0.00 4.02
594 606 1.337167 CGAATGCTCTCACCACTCACA 60.337 52.381 0.00 0.00 0.00 3.58
635 647 2.187946 CCCTGGACCATGTCTCGC 59.812 66.667 0.00 0.00 32.47 5.03
636 648 2.187946 GCCCTGGACCATGTCTCG 59.812 66.667 0.00 0.00 32.47 4.04
637 649 2.187946 CGCCCTGGACCATGTCTC 59.812 66.667 0.00 0.00 32.47 3.36
638 650 2.607750 ACGCCCTGGACCATGTCT 60.608 61.111 0.00 0.00 32.47 3.41
639 651 2.436646 CACGCCCTGGACCATGTC 60.437 66.667 0.00 0.00 0.00 3.06
640 652 4.033776 CCACGCCCTGGACCATGT 62.034 66.667 0.00 0.00 43.95 3.21
641 653 3.716195 TCCACGCCCTGGACCATG 61.716 66.667 0.00 0.00 44.99 3.66
647 659 2.124983 CTCACATCCACGCCCTGG 60.125 66.667 0.00 0.00 42.29 4.45
648 660 1.742880 CACTCACATCCACGCCCTG 60.743 63.158 0.00 0.00 0.00 4.45
649 661 2.665000 CACTCACATCCACGCCCT 59.335 61.111 0.00 0.00 0.00 5.19
650 662 2.436646 CCACTCACATCCACGCCC 60.437 66.667 0.00 0.00 0.00 6.13
651 663 2.034879 CACCACTCACATCCACGCC 61.035 63.158 0.00 0.00 0.00 5.68
652 664 1.005037 TCACCACTCACATCCACGC 60.005 57.895 0.00 0.00 0.00 5.34
653 665 0.603065 TCTCACCACTCACATCCACG 59.397 55.000 0.00 0.00 0.00 4.94
654 666 1.674221 GCTCTCACCACTCACATCCAC 60.674 57.143 0.00 0.00 0.00 4.02
655 667 0.610174 GCTCTCACCACTCACATCCA 59.390 55.000 0.00 0.00 0.00 3.41
656 668 0.610174 TGCTCTCACCACTCACATCC 59.390 55.000 0.00 0.00 0.00 3.51
657 669 2.687700 ATGCTCTCACCACTCACATC 57.312 50.000 0.00 0.00 0.00 3.06
658 670 2.676176 CGAATGCTCTCACCACTCACAT 60.676 50.000 0.00 0.00 0.00 3.21
659 671 1.337167 CGAATGCTCTCACCACTCACA 60.337 52.381 0.00 0.00 0.00 3.58
660 672 1.354040 CGAATGCTCTCACCACTCAC 58.646 55.000 0.00 0.00 0.00 3.51
661 673 0.247460 CCGAATGCTCTCACCACTCA 59.753 55.000 0.00 0.00 0.00 3.41
662 674 0.247736 ACCGAATGCTCTCACCACTC 59.752 55.000 0.00 0.00 0.00 3.51
663 675 0.687354 AACCGAATGCTCTCACCACT 59.313 50.000 0.00 0.00 0.00 4.00
664 676 1.197721 CAAACCGAATGCTCTCACCAC 59.802 52.381 0.00 0.00 0.00 4.16
665 677 1.522668 CAAACCGAATGCTCTCACCA 58.477 50.000 0.00 0.00 0.00 4.17
666 678 0.804989 CCAAACCGAATGCTCTCACC 59.195 55.000 0.00 0.00 0.00 4.02
667 679 0.169009 GCCAAACCGAATGCTCTCAC 59.831 55.000 0.00 0.00 0.00 3.51
668 680 0.250684 TGCCAAACCGAATGCTCTCA 60.251 50.000 0.00 0.00 0.00 3.27
669 681 0.169009 GTGCCAAACCGAATGCTCTC 59.831 55.000 0.00 0.00 0.00 3.20
670 682 1.244019 GGTGCCAAACCGAATGCTCT 61.244 55.000 0.00 0.00 39.81 4.09
671 683 1.212751 GGTGCCAAACCGAATGCTC 59.787 57.895 0.00 0.00 39.81 4.26
691 703 1.524002 CATGTCTCGCTCCCACCAT 59.476 57.895 0.00 0.00 0.00 3.55
799 824 0.895530 CCTTACCGGACTCTTGAGCA 59.104 55.000 9.46 0.00 33.16 4.26
847 872 1.078528 GGGGGAAAAGGTTGGAGGG 59.921 63.158 0.00 0.00 0.00 4.30
967 996 4.170053 TCTCTCTCTCTCTCTCTCTCCCTA 59.830 50.000 0.00 0.00 0.00 3.53
969 998 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
970 999 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
971 1000 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
974 1003 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
975 1004 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
976 1005 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
977 1006 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
978 1007 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
979 1008 5.538053 TCATCTCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
983 1012 4.262808 CCCTCATCTCTCTCTCTCTCTCTC 60.263 54.167 0.00 0.00 0.00 3.20
988 1017 3.668821 TCTCCCTCATCTCTCTCTCTCT 58.331 50.000 0.00 0.00 0.00 3.10
1132 1161 4.832248 ACTATGAGAGCAACAAATCGGAA 58.168 39.130 0.00 0.00 0.00 4.30
1148 1303 6.212388 AGAGCTCTGAAAGGAAAAGACTATGA 59.788 38.462 17.42 0.00 0.00 2.15
1149 1304 6.313411 CAGAGCTCTGAAAGGAAAAGACTATG 59.687 42.308 35.69 5.22 46.59 2.23
1150 1305 6.405538 CAGAGCTCTGAAAGGAAAAGACTAT 58.594 40.000 35.69 0.00 46.59 2.12
1151 1306 5.788450 CAGAGCTCTGAAAGGAAAAGACTA 58.212 41.667 35.69 0.00 46.59 2.59
1152 1307 4.640364 CAGAGCTCTGAAAGGAAAAGACT 58.360 43.478 35.69 0.00 46.59 3.24
1251 1919 4.279169 CCACAATTCAAGAACACCATCAGT 59.721 41.667 0.00 0.00 0.00 3.41
1339 2011 4.208686 CTACTCGGGGGCACGCTC 62.209 72.222 0.00 0.00 42.66 5.03
1354 2029 1.939974 CAATACTTCAGGCTGCGCTA 58.060 50.000 10.34 0.00 0.00 4.26
1358 2033 0.737219 CAGGCAATACTTCAGGCTGC 59.263 55.000 10.34 0.00 46.55 5.25
1364 2039 4.218200 CACCAAATCACAGGCAATACTTCA 59.782 41.667 0.00 0.00 0.00 3.02
1453 2128 7.665145 TGTATCCTCATGAAGATTGTTTCACAA 59.335 33.333 11.99 0.00 42.95 3.33
1512 2254 7.664318 CAGGTTTTGGTATTGTAAAGTAGGAGT 59.336 37.037 0.00 0.00 0.00 3.85
1513 2255 7.881232 TCAGGTTTTGGTATTGTAAAGTAGGAG 59.119 37.037 0.00 0.00 0.00 3.69
1530 2272 5.689961 CCGATGGTAAAAAGTTCAGGTTTTG 59.310 40.000 0.00 0.00 0.00 2.44
1541 2283 4.155826 TCACTGCAATCCGATGGTAAAAAG 59.844 41.667 0.00 0.00 0.00 2.27
1548 2290 0.729116 GTGTCACTGCAATCCGATGG 59.271 55.000 0.00 0.00 0.00 3.51
1583 2325 2.995466 ACGTGTTGAATGCATCCTTG 57.005 45.000 0.00 0.00 0.00 3.61
1652 2394 2.284625 ACCGTGGGCTCCAGATCA 60.285 61.111 0.00 0.00 32.34 2.92
1697 2439 1.964608 CTGGATGGAAGAGCTGGCGA 61.965 60.000 0.00 0.00 0.00 5.54
1788 2535 1.001269 AAAAAGGTAGCCGAGGCCC 60.001 57.895 10.95 5.89 43.17 5.80
1960 2733 1.386525 AACTGTGCACAACTGGCAGG 61.387 55.000 21.98 8.94 42.85 4.85
1961 2734 0.457035 AAACTGTGCACAACTGGCAG 59.543 50.000 21.98 14.16 42.85 4.85
1964 2737 3.489059 CCAACTAAACTGTGCACAACTGG 60.489 47.826 21.98 11.66 32.24 4.00
2076 4149 5.973651 TTCAATATAACGCTTCTGAGCTG 57.026 39.130 0.00 0.00 46.96 4.24
2221 4964 5.009631 TGAAAGGGTGTTCTATTCCATGTG 58.990 41.667 0.00 0.00 0.00 3.21
2256 4999 7.878036 TGACAATTTTAGTAGTTAAACTGGGC 58.122 34.615 0.00 0.00 31.11 5.36
2366 5196 0.178990 GGTCAAGGCAAAGGTCCACT 60.179 55.000 0.00 0.00 0.00 4.00
2426 5256 3.976942 CGACAGCATTGAAAACCAAGAAG 59.023 43.478 0.00 0.00 38.31 2.85
2561 5394 9.614792 TGAAAAGTAAATAAATAGAGAGGGAGC 57.385 33.333 0.00 0.00 0.00 4.70
2619 5452 9.691362 TTGTTTTCCTATTAACTTGCTCAAATC 57.309 29.630 0.00 0.00 0.00 2.17
2657 5490 7.566760 TTTTCACATCATCTACACTTGTTGT 57.433 32.000 0.00 0.00 42.84 3.32
2703 5849 8.926710 CATACTAGCCTTTTCTTATCAATACCG 58.073 37.037 0.00 0.00 0.00 4.02
2711 5857 7.130681 ACTCTGCATACTAGCCTTTTCTTAT 57.869 36.000 0.00 0.00 0.00 1.73
2713 5859 5.428184 ACTCTGCATACTAGCCTTTTCTT 57.572 39.130 0.00 0.00 0.00 2.52
2714 5860 6.546428 TTACTCTGCATACTAGCCTTTTCT 57.454 37.500 0.00 0.00 0.00 2.52
2715 5861 8.888579 TTATTACTCTGCATACTAGCCTTTTC 57.111 34.615 0.00 0.00 0.00 2.29
2716 5862 9.681062 TTTTATTACTCTGCATACTAGCCTTTT 57.319 29.630 0.00 0.00 0.00 2.27
2719 5865 6.931840 GCTTTTATTACTCTGCATACTAGCCT 59.068 38.462 0.00 0.00 0.00 4.58
2720 5866 6.128795 CGCTTTTATTACTCTGCATACTAGCC 60.129 42.308 0.00 0.00 0.00 3.93
2721 5867 6.616682 GCGCTTTTATTACTCTGCATACTAGC 60.617 42.308 0.00 0.00 0.00 3.42
2722 5868 6.642950 AGCGCTTTTATTACTCTGCATACTAG 59.357 38.462 2.64 0.00 0.00 2.57
2735 5890 4.155280 GTGAAACTCCCAGCGCTTTTATTA 59.845 41.667 7.50 0.00 0.00 0.98
2743 5898 0.598065 AAATGTGAAACTCCCAGCGC 59.402 50.000 0.00 0.00 38.04 5.92
2745 5900 1.546029 GGGAAATGTGAAACTCCCAGC 59.454 52.381 0.99 0.00 45.57 4.85
2748 5903 2.171003 CCAGGGAAATGTGAAACTCCC 58.829 52.381 0.00 0.00 46.37 4.30
2753 5908 6.381420 TGAAACTTAACCAGGGAAATGTGAAA 59.619 34.615 0.00 0.00 0.00 2.69
2754 5909 5.894393 TGAAACTTAACCAGGGAAATGTGAA 59.106 36.000 0.00 0.00 0.00 3.18
2755 5910 5.450453 TGAAACTTAACCAGGGAAATGTGA 58.550 37.500 0.00 0.00 0.00 3.58
2759 5914 4.524328 CAGCTGAAACTTAACCAGGGAAAT 59.476 41.667 8.42 0.00 0.00 2.17
2763 5918 3.140325 TCAGCTGAAACTTAACCAGGG 57.860 47.619 15.67 0.00 0.00 4.45
3317 6620 9.871238 ATAACAACGAAGAAACTACATAGATGT 57.129 29.630 0.08 0.08 44.48 3.06
3326 6629 6.643770 GTCAGGTGATAACAACGAAGAAACTA 59.356 38.462 0.00 0.00 38.96 2.24
3334 6643 4.888917 TCAATGTCAGGTGATAACAACGA 58.111 39.130 0.00 0.00 38.96 3.85
3336 6645 6.992063 ATCTCAATGTCAGGTGATAACAAC 57.008 37.500 0.00 0.00 0.00 3.32
3393 6702 4.507388 GCAAGCAAAGCAAGAACACAATTA 59.493 37.500 0.00 0.00 0.00 1.40
3397 6706 1.477700 AGCAAGCAAAGCAAGAACACA 59.522 42.857 0.00 0.00 0.00 3.72
3398 6707 1.856597 CAGCAAGCAAAGCAAGAACAC 59.143 47.619 0.00 0.00 0.00 3.32
3748 7057 2.010145 TAAGAGCGCACACTTGATCC 57.990 50.000 11.47 0.00 0.00 3.36
3756 7065 1.164411 CCACCAAATAAGAGCGCACA 58.836 50.000 11.47 0.00 0.00 4.57
3757 7066 0.179163 GCCACCAAATAAGAGCGCAC 60.179 55.000 11.47 2.25 0.00 5.34
3760 7069 1.131126 CACTGCCACCAAATAAGAGCG 59.869 52.381 0.00 0.00 0.00 5.03
3762 7071 3.569701 ACAACACTGCCACCAAATAAGAG 59.430 43.478 0.00 0.00 0.00 2.85
3763 7072 3.317711 CACAACACTGCCACCAAATAAGA 59.682 43.478 0.00 0.00 0.00 2.10
3765 7074 2.223923 GCACAACACTGCCACCAAATAA 60.224 45.455 0.00 0.00 0.00 1.40
3770 7084 2.044551 TGCACAACACTGCCACCA 60.045 55.556 0.00 0.00 36.21 4.17
3796 7110 3.142174 CAGGGACAGAGAAGAACAAACC 58.858 50.000 0.00 0.00 0.00 3.27
3821 7138 1.900245 ACATCACAGATGCAACAGCA 58.100 45.000 6.90 0.00 43.41 4.41
3822 7139 2.726989 CGAACATCACAGATGCAACAGC 60.727 50.000 6.90 0.00 0.00 4.40
3823 7140 2.159612 CCGAACATCACAGATGCAACAG 60.160 50.000 6.90 0.00 0.00 3.16
3871 7191 1.873591 GTCTGAGCACACGAACCAATT 59.126 47.619 0.00 0.00 0.00 2.32
3881 7201 2.338620 CCGAACCGTCTGAGCACA 59.661 61.111 0.00 0.00 0.00 4.57
3886 7206 2.501223 GATGGCACCGAACCGTCTGA 62.501 60.000 0.00 0.00 39.67 3.27
3888 7208 2.264794 GATGGCACCGAACCGTCT 59.735 61.111 0.00 0.00 39.67 4.18
3894 7214 1.202114 GCAAATTCTGATGGCACCGAA 59.798 47.619 0.00 0.00 0.00 4.30
3904 7224 2.158475 ACCTCCACTTGGCAAATTCTGA 60.158 45.455 0.00 0.00 34.44 3.27
3905 7225 2.242043 ACCTCCACTTGGCAAATTCTG 58.758 47.619 0.00 0.00 34.44 3.02
3906 7226 2.683211 ACCTCCACTTGGCAAATTCT 57.317 45.000 0.00 0.00 34.44 2.40
3907 7227 3.751479 AAACCTCCACTTGGCAAATTC 57.249 42.857 0.00 0.00 34.44 2.17
3908 7228 3.005367 CGTAAACCTCCACTTGGCAAATT 59.995 43.478 0.00 0.00 34.44 1.82
3909 7229 2.556622 CGTAAACCTCCACTTGGCAAAT 59.443 45.455 0.00 0.00 34.44 2.32
3910 7230 1.950909 CGTAAACCTCCACTTGGCAAA 59.049 47.619 0.00 0.00 34.44 3.68
3911 7231 1.134037 ACGTAAACCTCCACTTGGCAA 60.134 47.619 0.00 0.00 34.44 4.52
3912 7232 0.470766 ACGTAAACCTCCACTTGGCA 59.529 50.000 0.00 0.00 34.44 4.92
3913 7233 2.460757 TACGTAAACCTCCACTTGGC 57.539 50.000 0.00 0.00 34.44 4.52
3914 7234 4.818005 AGTTTTACGTAAACCTCCACTTGG 59.182 41.667 19.97 0.00 45.92 3.61
3915 7235 5.524646 TGAGTTTTACGTAAACCTCCACTTG 59.475 40.000 30.79 0.00 45.92 3.16
3916 7236 5.673514 TGAGTTTTACGTAAACCTCCACTT 58.326 37.500 30.79 13.75 45.92 3.16
3917 7237 5.280654 TGAGTTTTACGTAAACCTCCACT 57.719 39.130 30.79 24.60 45.92 4.00
3918 7238 5.556947 CGTTGAGTTTTACGTAAACCTCCAC 60.557 44.000 30.79 28.55 45.92 4.02
3919 7239 4.507388 CGTTGAGTTTTACGTAAACCTCCA 59.493 41.667 30.79 22.63 45.92 3.86
3920 7240 5.010249 CGTTGAGTTTTACGTAAACCTCC 57.990 43.478 30.79 20.39 45.92 4.30
3929 7249 6.047449 CGTAGACTTACGTTGAGTTTTACG 57.953 41.667 20.96 20.96 45.79 3.18
3942 7262 6.250104 GCAACACTACACATACGTAGACTTAC 59.750 42.308 0.08 0.00 41.21 2.34
3943 7263 6.149973 AGCAACACTACACATACGTAGACTTA 59.850 38.462 0.08 0.00 41.21 2.24
3944 7264 5.048224 AGCAACACTACACATACGTAGACTT 60.048 40.000 0.08 0.00 41.21 3.01
3945 7265 4.458295 AGCAACACTACACATACGTAGACT 59.542 41.667 0.08 0.00 41.21 3.24
3946 7266 4.730657 AGCAACACTACACATACGTAGAC 58.269 43.478 0.08 0.00 41.21 2.59
3947 7267 4.436451 CGAGCAACACTACACATACGTAGA 60.436 45.833 0.08 0.00 41.21 2.59
3948 7268 3.784468 CGAGCAACACTACACATACGTAG 59.216 47.826 0.08 0.00 43.76 3.51
3949 7269 3.189080 ACGAGCAACACTACACATACGTA 59.811 43.478 0.00 0.00 0.00 3.57
3950 7270 2.030540 ACGAGCAACACTACACATACGT 60.031 45.455 0.00 0.00 0.00 3.57
3951 7271 2.592194 ACGAGCAACACTACACATACG 58.408 47.619 0.00 0.00 0.00 3.06
3952 7272 3.608506 CAGACGAGCAACACTACACATAC 59.391 47.826 0.00 0.00 0.00 2.39
3953 7273 3.254903 ACAGACGAGCAACACTACACATA 59.745 43.478 0.00 0.00 0.00 2.29
3954 7274 2.035961 ACAGACGAGCAACACTACACAT 59.964 45.455 0.00 0.00 0.00 3.21
3955 7275 1.407618 ACAGACGAGCAACACTACACA 59.592 47.619 0.00 0.00 0.00 3.72
3956 7276 1.787155 CACAGACGAGCAACACTACAC 59.213 52.381 0.00 0.00 0.00 2.90
3957 7277 1.679153 TCACAGACGAGCAACACTACA 59.321 47.619 0.00 0.00 0.00 2.74
3958 7278 2.320367 CTCACAGACGAGCAACACTAC 58.680 52.381 0.00 0.00 0.00 2.73
3959 7279 1.269723 CCTCACAGACGAGCAACACTA 59.730 52.381 0.00 0.00 0.00 2.74
3960 7280 0.032678 CCTCACAGACGAGCAACACT 59.967 55.000 0.00 0.00 0.00 3.55
3961 7281 0.032130 TCCTCACAGACGAGCAACAC 59.968 55.000 0.00 0.00 0.00 3.32
3962 7282 0.750249 TTCCTCACAGACGAGCAACA 59.250 50.000 0.00 0.00 0.00 3.33
3963 7283 1.423395 CTTCCTCACAGACGAGCAAC 58.577 55.000 0.00 0.00 0.00 4.17
3964 7284 0.318441 CCTTCCTCACAGACGAGCAA 59.682 55.000 0.00 0.00 0.00 3.91
3965 7285 0.827925 ACCTTCCTCACAGACGAGCA 60.828 55.000 0.00 0.00 0.00 4.26
3966 7286 0.389166 CACCTTCCTCACAGACGAGC 60.389 60.000 0.00 0.00 0.00 5.03
3967 7287 0.244994 CCACCTTCCTCACAGACGAG 59.755 60.000 0.00 0.00 0.00 4.18
3968 7288 0.469331 ACCACCTTCCTCACAGACGA 60.469 55.000 0.00 0.00 0.00 4.20
3969 7289 1.254026 TACCACCTTCCTCACAGACG 58.746 55.000 0.00 0.00 0.00 4.18
4025 7345 3.359950 GGAAGTCATCCCTGCAATTTCT 58.640 45.455 0.00 0.00 43.00 2.52
4026 7346 3.790152 GGAAGTCATCCCTGCAATTTC 57.210 47.619 0.00 0.00 43.00 2.17
4037 7363 9.965824 TTTCATAAGAAAACAAAGGAAGTCATC 57.034 29.630 0.00 0.00 40.61 2.92
4055 7381 8.044060 TGGTCTACATTCTTTGCTTTCATAAG 57.956 34.615 0.00 0.00 34.36 1.73
4070 7396 6.942532 AATTTGCATCGTATGGTCTACATT 57.057 33.333 0.00 0.00 41.03 2.71
4097 7451 6.093495 TGAAATAAATGCTTCGTTAGGACTGG 59.907 38.462 0.00 0.00 0.00 4.00
4098 7452 7.072177 TGAAATAAATGCTTCGTTAGGACTG 57.928 36.000 0.00 0.00 0.00 3.51
4165 7520 6.650807 CCTGTAAGCTGAGAGAGAGATAGTAG 59.349 46.154 0.00 0.00 0.00 2.57
4166 7521 6.465178 CCCTGTAAGCTGAGAGAGAGATAGTA 60.465 46.154 0.00 0.00 0.00 1.82
4167 7522 5.376625 CCTGTAAGCTGAGAGAGAGATAGT 58.623 45.833 0.00 0.00 0.00 2.12
4168 7523 4.761739 CCCTGTAAGCTGAGAGAGAGATAG 59.238 50.000 0.00 0.00 0.00 2.08
4169 7524 4.724399 CCCTGTAAGCTGAGAGAGAGATA 58.276 47.826 0.00 0.00 0.00 1.98
4170 7525 3.565307 CCCTGTAAGCTGAGAGAGAGAT 58.435 50.000 0.00 0.00 0.00 2.75
4171 7526 2.948147 GCCCTGTAAGCTGAGAGAGAGA 60.948 54.545 0.00 0.00 0.00 3.10
4172 7527 1.408702 GCCCTGTAAGCTGAGAGAGAG 59.591 57.143 0.00 0.00 0.00 3.20
4173 7528 1.479709 GCCCTGTAAGCTGAGAGAGA 58.520 55.000 0.00 0.00 0.00 3.10
4174 7529 0.102120 CGCCCTGTAAGCTGAGAGAG 59.898 60.000 0.00 0.00 0.00 3.20
4175 7530 0.612174 ACGCCCTGTAAGCTGAGAGA 60.612 55.000 0.00 0.00 0.00 3.10
4176 7531 0.459237 CACGCCCTGTAAGCTGAGAG 60.459 60.000 0.00 0.00 0.00 3.20
4177 7532 1.591703 CACGCCCTGTAAGCTGAGA 59.408 57.895 0.00 0.00 0.00 3.27
4178 7533 2.103042 GCACGCCCTGTAAGCTGAG 61.103 63.158 0.00 0.00 0.00 3.35
4179 7534 2.047274 GCACGCCCTGTAAGCTGA 60.047 61.111 0.00 0.00 0.00 4.26
4180 7535 3.490759 CGCACGCCCTGTAAGCTG 61.491 66.667 0.00 0.00 0.00 4.24
4183 7538 3.975083 TACGCGCACGCCCTGTAAG 62.975 63.158 5.73 0.00 45.53 2.34
4184 7539 3.359515 ATACGCGCACGCCCTGTAA 62.360 57.895 5.73 0.00 45.53 2.41
4185 7540 3.761445 GATACGCGCACGCCCTGTA 62.761 63.158 5.73 6.59 45.53 2.74
4190 7545 4.274700 TAGGGATACGCGCACGCC 62.275 66.667 5.73 2.11 45.53 5.68
4191 7546 2.729862 CTAGGGATACGCGCACGC 60.730 66.667 5.73 4.64 45.53 5.34
4193 7548 1.007618 GACCTAGGGATACGCGCAC 60.008 63.158 14.81 0.00 37.60 5.34
4194 7549 0.826256 ATGACCTAGGGATACGCGCA 60.826 55.000 14.81 0.00 37.60 6.09
4195 7550 0.109226 GATGACCTAGGGATACGCGC 60.109 60.000 14.81 0.00 37.60 6.86
4196 7551 1.244816 TGATGACCTAGGGATACGCG 58.755 55.000 14.81 3.53 37.60 6.01
4197 7552 3.963428 ATTGATGACCTAGGGATACGC 57.037 47.619 14.81 0.00 37.60 4.42
4198 7553 5.696724 GTCAAATTGATGACCTAGGGATACG 59.303 44.000 14.81 0.00 43.11 3.06
4249 7604 8.471609 CCCCGAAGTTTATGTTGGTATATTTTT 58.528 33.333 0.00 0.00 0.00 1.94
4250 7605 7.616542 ACCCCGAAGTTTATGTTGGTATATTTT 59.383 33.333 0.00 0.00 0.00 1.82
4251 7606 7.120716 ACCCCGAAGTTTATGTTGGTATATTT 58.879 34.615 0.00 0.00 0.00 1.40
4252 7607 6.665695 ACCCCGAAGTTTATGTTGGTATATT 58.334 36.000 0.00 0.00 0.00 1.28
4253 7608 6.256643 ACCCCGAAGTTTATGTTGGTATAT 57.743 37.500 0.00 0.00 0.00 0.86
4254 7609 5.697082 ACCCCGAAGTTTATGTTGGTATA 57.303 39.130 0.00 0.00 0.00 1.47
4255 7610 4.579647 ACCCCGAAGTTTATGTTGGTAT 57.420 40.909 0.00 0.00 0.00 2.73
4256 7611 4.370094 AACCCCGAAGTTTATGTTGGTA 57.630 40.909 0.00 0.00 0.00 3.25
4257 7612 2.963599 ACCCCGAAGTTTATGTTGGT 57.036 45.000 0.00 0.00 0.00 3.67
4258 7613 3.824443 AGAAACCCCGAAGTTTATGTTGG 59.176 43.478 3.20 0.00 40.01 3.77
4259 7614 5.704053 AGTAGAAACCCCGAAGTTTATGTTG 59.296 40.000 7.41 0.00 40.01 3.33
4260 7615 5.872963 AGTAGAAACCCCGAAGTTTATGTT 58.127 37.500 7.41 0.00 40.01 2.71
4261 7616 5.494390 AGTAGAAACCCCGAAGTTTATGT 57.506 39.130 7.41 0.00 40.01 2.29
4262 7617 6.428771 TGAAAGTAGAAACCCCGAAGTTTATG 59.571 38.462 7.41 0.00 40.01 1.90
4263 7618 6.536447 TGAAAGTAGAAACCCCGAAGTTTAT 58.464 36.000 3.20 3.36 40.01 1.40
4264 7619 5.927819 TGAAAGTAGAAACCCCGAAGTTTA 58.072 37.500 3.20 0.00 40.01 2.01
4265 7620 4.784177 TGAAAGTAGAAACCCCGAAGTTT 58.216 39.130 2.87 2.87 42.56 2.66
4266 7621 4.426736 TGAAAGTAGAAACCCCGAAGTT 57.573 40.909 0.00 0.00 0.00 2.66
4267 7622 4.426736 TTGAAAGTAGAAACCCCGAAGT 57.573 40.909 0.00 0.00 0.00 3.01
4268 7623 5.278315 CCTTTTGAAAGTAGAAACCCCGAAG 60.278 44.000 3.09 0.00 34.20 3.79
4269 7624 4.581409 CCTTTTGAAAGTAGAAACCCCGAA 59.419 41.667 3.09 0.00 34.20 4.30
4270 7625 4.139038 CCTTTTGAAAGTAGAAACCCCGA 58.861 43.478 3.09 0.00 34.20 5.14
4271 7626 3.887110 ACCTTTTGAAAGTAGAAACCCCG 59.113 43.478 3.09 0.00 34.20 5.73
4272 7627 8.640063 TTATACCTTTTGAAAGTAGAAACCCC 57.360 34.615 3.09 0.00 34.20 4.95
4320 7675 9.689501 CCTAGGTTGTCAATTTTATTACCCTAA 57.310 33.333 0.00 0.00 0.00 2.69
4321 7676 8.838741 ACCTAGGTTGTCAATTTTATTACCCTA 58.161 33.333 9.21 0.00 0.00 3.53
4322 7677 7.705700 ACCTAGGTTGTCAATTTTATTACCCT 58.294 34.615 9.21 0.00 0.00 4.34
4323 7678 7.949690 ACCTAGGTTGTCAATTTTATTACCC 57.050 36.000 9.21 0.00 0.00 3.69
4327 7682 8.833493 GCGTATACCTAGGTTGTCAATTTTATT 58.167 33.333 22.11 0.00 0.00 1.40
4328 7683 7.170320 CGCGTATACCTAGGTTGTCAATTTTAT 59.830 37.037 22.11 5.71 0.00 1.40
4329 7684 6.476380 CGCGTATACCTAGGTTGTCAATTTTA 59.524 38.462 22.11 0.00 0.00 1.52
4330 7685 5.292589 CGCGTATACCTAGGTTGTCAATTTT 59.707 40.000 22.11 0.00 0.00 1.82
4331 7686 4.807304 CGCGTATACCTAGGTTGTCAATTT 59.193 41.667 22.11 0.00 0.00 1.82
4332 7687 4.365723 CGCGTATACCTAGGTTGTCAATT 58.634 43.478 22.11 0.00 0.00 2.32
4333 7688 3.797865 GCGCGTATACCTAGGTTGTCAAT 60.798 47.826 22.11 9.64 0.00 2.57
4334 7689 2.480073 GCGCGTATACCTAGGTTGTCAA 60.480 50.000 22.11 0.75 0.00 3.18
4335 7690 1.066002 GCGCGTATACCTAGGTTGTCA 59.934 52.381 22.11 1.21 0.00 3.58
4336 7691 1.066002 TGCGCGTATACCTAGGTTGTC 59.934 52.381 22.11 9.56 0.00 3.18
4337 7692 1.066605 CTGCGCGTATACCTAGGTTGT 59.933 52.381 22.11 12.13 0.00 3.32
4338 7693 1.602165 CCTGCGCGTATACCTAGGTTG 60.602 57.143 22.11 9.15 0.00 3.77
4339 7694 0.672342 CCTGCGCGTATACCTAGGTT 59.328 55.000 22.11 10.62 0.00 3.50
4340 7695 0.179009 TCCTGCGCGTATACCTAGGT 60.179 55.000 20.57 20.57 0.00 3.08
4341 7696 0.240411 GTCCTGCGCGTATACCTAGG 59.760 60.000 7.41 7.41 0.00 3.02
4342 7697 1.236628 AGTCCTGCGCGTATACCTAG 58.763 55.000 8.43 0.00 0.00 3.02
4343 7698 1.335810 CAAGTCCTGCGCGTATACCTA 59.664 52.381 8.43 0.00 0.00 3.08
4344 7699 0.102481 CAAGTCCTGCGCGTATACCT 59.898 55.000 8.43 0.00 0.00 3.08
4345 7700 0.179119 ACAAGTCCTGCGCGTATACC 60.179 55.000 8.43 0.00 0.00 2.73
4346 7701 2.480224 TACAAGTCCTGCGCGTATAC 57.520 50.000 8.43 4.74 0.00 1.47
4347 7702 3.119388 AGTTTACAAGTCCTGCGCGTATA 60.119 43.478 8.43 0.00 0.00 1.47
4348 7703 1.997606 GTTTACAAGTCCTGCGCGTAT 59.002 47.619 8.43 0.00 0.00 3.06
4349 7704 1.000060 AGTTTACAAGTCCTGCGCGTA 60.000 47.619 8.43 0.71 0.00 4.42
4350 7705 0.249741 AGTTTACAAGTCCTGCGCGT 60.250 50.000 8.43 0.00 0.00 6.01
4351 7706 0.163788 CAGTTTACAAGTCCTGCGCG 59.836 55.000 0.00 0.00 0.00 6.86
4352 7707 1.508632 TCAGTTTACAAGTCCTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
4353 7708 4.527564 CTTTTCAGTTTACAAGTCCTGCG 58.472 43.478 0.00 0.00 0.00 5.18
4354 7709 4.578928 TCCTTTTCAGTTTACAAGTCCTGC 59.421 41.667 0.00 0.00 0.00 4.85
4355 7710 5.239525 CCTCCTTTTCAGTTTACAAGTCCTG 59.760 44.000 0.00 0.00 0.00 3.86
4356 7711 5.104067 ACCTCCTTTTCAGTTTACAAGTCCT 60.104 40.000 0.00 0.00 0.00 3.85
4357 7712 5.131067 ACCTCCTTTTCAGTTTACAAGTCC 58.869 41.667 0.00 0.00 0.00 3.85
4358 7713 6.990939 ACTACCTCCTTTTCAGTTTACAAGTC 59.009 38.462 0.00 0.00 0.00 3.01
4359 7714 6.896883 ACTACCTCCTTTTCAGTTTACAAGT 58.103 36.000 0.00 0.00 0.00 3.16
4362 7717 9.537852 TCTATACTACCTCCTTTTCAGTTTACA 57.462 33.333 0.00 0.00 0.00 2.41
4367 7722 9.495382 AGATTTCTATACTACCTCCTTTTCAGT 57.505 33.333 0.00 0.00 0.00 3.41
4368 7723 9.974980 GAGATTTCTATACTACCTCCTTTTCAG 57.025 37.037 0.00 0.00 0.00 3.02
4369 7724 9.716556 AGAGATTTCTATACTACCTCCTTTTCA 57.283 33.333 0.00 0.00 0.00 2.69
4371 7726 8.852135 CGAGAGATTTCTATACTACCTCCTTTT 58.148 37.037 0.00 0.00 32.53 2.27
4372 7727 8.219178 TCGAGAGATTTCTATACTACCTCCTTT 58.781 37.037 0.00 0.00 32.53 3.11
4373 7728 7.747690 TCGAGAGATTTCTATACTACCTCCTT 58.252 38.462 0.00 0.00 32.53 3.36
4374 7729 7.319052 TCGAGAGATTTCTATACTACCTCCT 57.681 40.000 0.00 0.00 32.53 3.69
4375 7730 7.982761 TTCGAGAGATTTCTATACTACCTCC 57.017 40.000 0.00 0.00 41.60 4.30
4379 7734 9.777575 GCCTATTTCGAGAGATTTCTATACTAC 57.222 37.037 0.00 0.00 41.60 2.73
4380 7735 8.666573 CGCCTATTTCGAGAGATTTCTATACTA 58.333 37.037 0.00 0.00 41.60 1.82
4381 7736 7.390996 TCGCCTATTTCGAGAGATTTCTATACT 59.609 37.037 0.00 0.00 41.60 2.12
4382 7737 7.528307 TCGCCTATTTCGAGAGATTTCTATAC 58.472 38.462 0.00 0.00 41.60 1.47
4471 8808 3.038945 GCCCCAGCCGCCTTAGTTA 62.039 63.158 0.00 0.00 0.00 2.24
4542 8881 2.124860 ATGCTGCATGCTGCTCGA 60.125 55.556 38.25 25.18 45.31 4.04
4547 8886 1.002359 GTCTCATCATGCTGCATGCTG 60.002 52.381 30.49 30.49 41.18 4.41
4548 8887 1.134068 AGTCTCATCATGCTGCATGCT 60.134 47.619 32.23 23.21 41.18 3.79
4560 8899 5.179368 CGTCTCTCCTCTTCATAGTCTCATC 59.821 48.000 0.00 0.00 0.00 2.92
4596 8935 1.089112 CATGTTGGATGCGCTTCTGA 58.911 50.000 21.05 8.75 0.00 3.27
4597 8936 1.063616 CTCATGTTGGATGCGCTTCTG 59.936 52.381 21.05 12.07 0.00 3.02
4616 8955 0.321653 GATTGTGGTCGGCTTGGTCT 60.322 55.000 0.00 0.00 0.00 3.85
4617 8956 1.305930 GGATTGTGGTCGGCTTGGTC 61.306 60.000 0.00 0.00 0.00 4.02
4618 8957 1.303317 GGATTGTGGTCGGCTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
4619 8958 1.002134 AGGATTGTGGTCGGCTTGG 60.002 57.895 0.00 0.00 0.00 3.61
4620 8959 1.926511 GCAGGATTGTGGTCGGCTTG 61.927 60.000 0.00 0.00 0.00 4.01
4621 8960 1.675641 GCAGGATTGTGGTCGGCTT 60.676 57.895 0.00 0.00 0.00 4.35
4622 8961 2.045926 GCAGGATTGTGGTCGGCT 60.046 61.111 0.00 0.00 0.00 5.52
4623 8962 2.045926 AGCAGGATTGTGGTCGGC 60.046 61.111 0.00 0.00 0.00 5.54
4624 8963 2.401766 GCAGCAGGATTGTGGTCGG 61.402 63.158 0.00 0.00 0.00 4.79
4625 8964 2.401766 GGCAGCAGGATTGTGGTCG 61.402 63.158 0.00 0.00 0.00 4.79
4626 8965 2.401766 CGGCAGCAGGATTGTGGTC 61.402 63.158 0.00 0.00 0.00 4.02
4627 8966 2.360350 CGGCAGCAGGATTGTGGT 60.360 61.111 0.00 0.00 0.00 4.16
4628 8967 3.136123 CCGGCAGCAGGATTGTGG 61.136 66.667 5.48 0.00 0.00 4.17
4629 8968 3.136123 CCCGGCAGCAGGATTGTG 61.136 66.667 14.05 0.00 0.00 3.33
4630 8969 3.650950 ACCCGGCAGCAGGATTGT 61.651 61.111 14.05 0.00 0.00 2.71
4631 8970 3.136123 CACCCGGCAGCAGGATTG 61.136 66.667 14.05 5.97 0.00 2.67
4642 8981 2.597217 TTTCTTGCTGGCACCCGG 60.597 61.111 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.