Multiple sequence alignment - TraesCS4D01G242600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G242600 chr4D 100.000 3880 0 0 1 3880 405304181 405308060 0.000000e+00 7166
1 TraesCS4D01G242600 chr4D 96.798 531 10 6 3355 3880 405314554 405315082 0.000000e+00 880
2 TraesCS4D01G242600 chr4D 95.413 545 15 9 3343 3880 384242006 384242547 0.000000e+00 859
3 TraesCS4D01G242600 chr4B 95.634 2565 95 12 792 3354 503558135 503560684 0.000000e+00 4100
4 TraesCS4D01G242600 chr4A 95.213 2235 82 11 1134 3354 63008352 63010575 0.000000e+00 3511
5 TraesCS4D01G242600 chr4A 94.017 234 8 2 792 1022 63007785 63008015 2.220000e-92 350
6 TraesCS4D01G242600 chr7D 96.798 531 13 3 3353 3880 268989345 268989874 0.000000e+00 883
7 TraesCS4D01G242600 chr7D 96.597 529 15 2 3355 3880 268996966 268997494 0.000000e+00 874
8 TraesCS4D01G242600 chr2D 96.241 532 10 6 3355 3880 509319649 509319122 0.000000e+00 863
9 TraesCS4D01G242600 chr2D 95.709 536 17 5 3351 3880 26553428 26552893 0.000000e+00 857
10 TraesCS4D01G242600 chr5D 95.888 535 14 6 3352 3880 415744833 415744301 0.000000e+00 859
11 TraesCS4D01G242600 chr1D 96.045 531 15 3 3355 3880 114140750 114140221 0.000000e+00 859
12 TraesCS4D01G242600 chr3D 95.238 546 15 9 3341 3880 327625534 327624994 0.000000e+00 854
13 TraesCS4D01G242600 chr2A 75.590 975 185 29 1912 2870 147462205 147461268 2.140000e-117 433
14 TraesCS4D01G242600 chr1B 84.615 130 15 5 16 141 5582054 5581926 1.460000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G242600 chr4D 405304181 405308060 3879 False 7166.0 7166 100.000 1 3880 1 chr4D.!!$F2 3879
1 TraesCS4D01G242600 chr4D 405314554 405315082 528 False 880.0 880 96.798 3355 3880 1 chr4D.!!$F3 525
2 TraesCS4D01G242600 chr4D 384242006 384242547 541 False 859.0 859 95.413 3343 3880 1 chr4D.!!$F1 537
3 TraesCS4D01G242600 chr4B 503558135 503560684 2549 False 4100.0 4100 95.634 792 3354 1 chr4B.!!$F1 2562
4 TraesCS4D01G242600 chr4A 63007785 63010575 2790 False 1930.5 3511 94.615 792 3354 2 chr4A.!!$F1 2562
5 TraesCS4D01G242600 chr7D 268989345 268989874 529 False 883.0 883 96.798 3353 3880 1 chr7D.!!$F1 527
6 TraesCS4D01G242600 chr7D 268996966 268997494 528 False 874.0 874 96.597 3355 3880 1 chr7D.!!$F2 525
7 TraesCS4D01G242600 chr2D 509319122 509319649 527 True 863.0 863 96.241 3355 3880 1 chr2D.!!$R2 525
8 TraesCS4D01G242600 chr2D 26552893 26553428 535 True 857.0 857 95.709 3351 3880 1 chr2D.!!$R1 529
9 TraesCS4D01G242600 chr5D 415744301 415744833 532 True 859.0 859 95.888 3352 3880 1 chr5D.!!$R1 528
10 TraesCS4D01G242600 chr1D 114140221 114140750 529 True 859.0 859 96.045 3355 3880 1 chr1D.!!$R1 525
11 TraesCS4D01G242600 chr3D 327624994 327625534 540 True 854.0 854 95.238 3341 3880 1 chr3D.!!$R1 539
12 TraesCS4D01G242600 chr2A 147461268 147462205 937 True 433.0 433 75.590 1912 2870 1 chr2A.!!$R1 958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.035247 GGTGCCGTAATGGGTTGGTA 60.035 55.000 0.00 0.00 38.63 3.25 F
382 383 0.038166 TGCCCCATTGACTTCTGGAC 59.962 55.000 0.00 0.00 34.24 4.02 F
1241 1471 0.040336 CACGCGATCGCCTACTACAT 60.040 55.000 32.63 6.72 39.84 2.29 F
1897 2127 2.358898 GCGGTATCTTCAATGCCATTGT 59.641 45.455 16.55 0.69 41.02 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2130 0.393402 GTGCCCTGATGAGATGTGCA 60.393 55.000 0.00 0.0 0.00 4.57 R
1934 2164 1.528776 GATCTCCGGGTACGCTCCT 60.529 63.158 0.00 0.0 39.22 3.69 R
2159 2398 2.571757 CTGAGGAAGCGGCGTACA 59.428 61.111 9.37 0.0 0.00 2.90 R
3326 3579 0.255890 GGGGTGCTGGCTATCTTGAA 59.744 55.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.334054 GTGCCCTCCTCCCTGCTT 61.334 66.667 0.00 0.00 0.00 3.91
29 30 1.995626 GTGCCCTCCTCCCTGCTTA 60.996 63.158 0.00 0.00 0.00 3.09
30 31 1.004758 TGCCCTCCTCCCTGCTTAT 59.995 57.895 0.00 0.00 0.00 1.73
31 32 0.267658 TGCCCTCCTCCCTGCTTATA 59.732 55.000 0.00 0.00 0.00 0.98
32 33 1.132397 TGCCCTCCTCCCTGCTTATAT 60.132 52.381 0.00 0.00 0.00 0.86
33 34 1.280421 GCCCTCCTCCCTGCTTATATG 59.720 57.143 0.00 0.00 0.00 1.78
34 35 1.912043 CCCTCCTCCCTGCTTATATGG 59.088 57.143 0.00 0.00 0.00 2.74
35 36 2.625639 CCTCCTCCCTGCTTATATGGT 58.374 52.381 0.00 0.00 0.00 3.55
36 37 2.304180 CCTCCTCCCTGCTTATATGGTG 59.696 54.545 0.00 0.00 0.00 4.17
37 38 2.975489 CTCCTCCCTGCTTATATGGTGT 59.025 50.000 0.00 0.00 0.00 4.16
38 39 2.705658 TCCTCCCTGCTTATATGGTGTG 59.294 50.000 0.00 0.00 0.00 3.82
39 40 2.498167 CTCCCTGCTTATATGGTGTGC 58.502 52.381 0.00 0.00 0.00 4.57
40 41 2.105477 CTCCCTGCTTATATGGTGTGCT 59.895 50.000 0.00 0.00 0.00 4.40
41 42 3.313791 TCCCTGCTTATATGGTGTGCTA 58.686 45.455 0.00 0.00 0.00 3.49
42 43 3.324846 TCCCTGCTTATATGGTGTGCTAG 59.675 47.826 0.00 0.00 0.00 3.42
43 44 3.557898 CCCTGCTTATATGGTGTGCTAGG 60.558 52.174 0.00 0.00 0.00 3.02
44 45 3.324846 CCTGCTTATATGGTGTGCTAGGA 59.675 47.826 0.00 0.00 0.00 2.94
45 46 4.562347 CCTGCTTATATGGTGTGCTAGGAG 60.562 50.000 0.00 0.00 0.00 3.69
46 47 3.324846 TGCTTATATGGTGTGCTAGGAGG 59.675 47.826 0.00 0.00 0.00 4.30
47 48 3.307059 GCTTATATGGTGTGCTAGGAGGG 60.307 52.174 0.00 0.00 0.00 4.30
48 49 1.734655 ATATGGTGTGCTAGGAGGGG 58.265 55.000 0.00 0.00 0.00 4.79
49 50 0.341961 TATGGTGTGCTAGGAGGGGT 59.658 55.000 0.00 0.00 0.00 4.95
50 51 1.274703 ATGGTGTGCTAGGAGGGGTG 61.275 60.000 0.00 0.00 0.00 4.61
51 52 2.269241 GTGTGCTAGGAGGGGTGC 59.731 66.667 0.00 0.00 0.00 5.01
52 53 3.009115 TGTGCTAGGAGGGGTGCC 61.009 66.667 0.00 0.00 0.00 5.01
53 54 4.162690 GTGCTAGGAGGGGTGCCG 62.163 72.222 0.00 0.00 0.00 5.69
54 55 4.715130 TGCTAGGAGGGGTGCCGT 62.715 66.667 0.00 0.00 0.00 5.68
55 56 2.443390 GCTAGGAGGGGTGCCGTA 60.443 66.667 0.00 0.00 0.00 4.02
56 57 2.062177 GCTAGGAGGGGTGCCGTAA 61.062 63.158 0.00 0.00 0.00 3.18
57 58 1.408453 GCTAGGAGGGGTGCCGTAAT 61.408 60.000 0.00 0.00 0.00 1.89
58 59 0.393077 CTAGGAGGGGTGCCGTAATG 59.607 60.000 0.00 0.00 0.00 1.90
59 60 1.052124 TAGGAGGGGTGCCGTAATGG 61.052 60.000 0.00 0.00 42.50 3.16
60 61 2.192175 GAGGGGTGCCGTAATGGG 59.808 66.667 0.00 0.00 38.63 4.00
61 62 2.612746 AGGGGTGCCGTAATGGGT 60.613 61.111 0.00 0.00 38.63 4.51
62 63 2.206182 GAGGGGTGCCGTAATGGGTT 62.206 60.000 0.00 0.00 38.63 4.11
63 64 2.049767 GGGGTGCCGTAATGGGTTG 61.050 63.158 0.00 0.00 38.63 3.77
64 65 2.049767 GGGTGCCGTAATGGGTTGG 61.050 63.158 0.00 0.00 38.63 3.77
65 66 1.303806 GGTGCCGTAATGGGTTGGT 60.304 57.895 0.00 0.00 38.63 3.67
66 67 0.035247 GGTGCCGTAATGGGTTGGTA 60.035 55.000 0.00 0.00 38.63 3.25
67 68 1.409101 GGTGCCGTAATGGGTTGGTAT 60.409 52.381 0.00 0.00 38.63 2.73
68 69 2.158784 GGTGCCGTAATGGGTTGGTATA 60.159 50.000 0.00 0.00 38.63 1.47
69 70 3.543665 GTGCCGTAATGGGTTGGTATAA 58.456 45.455 0.00 0.00 38.63 0.98
70 71 3.946558 GTGCCGTAATGGGTTGGTATAAA 59.053 43.478 0.00 0.00 38.63 1.40
71 72 4.581409 GTGCCGTAATGGGTTGGTATAAAT 59.419 41.667 0.00 0.00 38.63 1.40
72 73 4.580995 TGCCGTAATGGGTTGGTATAAATG 59.419 41.667 0.00 0.00 38.63 2.32
73 74 4.557895 GCCGTAATGGGTTGGTATAAATGC 60.558 45.833 0.00 0.00 38.63 3.56
74 75 4.825085 CCGTAATGGGTTGGTATAAATGCT 59.175 41.667 0.00 0.00 0.00 3.79
75 76 5.998981 CCGTAATGGGTTGGTATAAATGCTA 59.001 40.000 0.00 0.00 0.00 3.49
76 77 6.657541 CCGTAATGGGTTGGTATAAATGCTAT 59.342 38.462 0.00 0.00 0.00 2.97
77 78 7.361713 CCGTAATGGGTTGGTATAAATGCTATG 60.362 40.741 0.00 0.00 0.00 2.23
78 79 6.916360 AATGGGTTGGTATAAATGCTATGG 57.084 37.500 0.00 0.00 0.00 2.74
79 80 5.654901 TGGGTTGGTATAAATGCTATGGA 57.345 39.130 0.00 0.00 0.00 3.41
80 81 6.212840 TGGGTTGGTATAAATGCTATGGAT 57.787 37.500 0.00 0.00 0.00 3.41
81 82 6.009589 TGGGTTGGTATAAATGCTATGGATG 58.990 40.000 0.00 0.00 0.00 3.51
82 83 5.418840 GGGTTGGTATAAATGCTATGGATGG 59.581 44.000 0.00 0.00 0.00 3.51
83 84 6.010219 GGTTGGTATAAATGCTATGGATGGT 58.990 40.000 0.00 0.00 0.00 3.55
84 85 6.151144 GGTTGGTATAAATGCTATGGATGGTC 59.849 42.308 0.00 0.00 0.00 4.02
85 86 5.487433 TGGTATAAATGCTATGGATGGTCG 58.513 41.667 0.00 0.00 0.00 4.79
86 87 4.332819 GGTATAAATGCTATGGATGGTCGC 59.667 45.833 0.00 0.00 0.00 5.19
87 88 2.346766 AAATGCTATGGATGGTCGCA 57.653 45.000 0.00 0.00 34.83 5.10
88 89 2.574006 AATGCTATGGATGGTCGCAT 57.426 45.000 0.00 0.00 42.56 4.73
89 90 1.817357 ATGCTATGGATGGTCGCATG 58.183 50.000 0.00 0.00 39.60 4.06
90 91 0.886043 TGCTATGGATGGTCGCATGC 60.886 55.000 7.91 7.91 0.00 4.06
91 92 0.886043 GCTATGGATGGTCGCATGCA 60.886 55.000 19.57 1.73 37.32 3.96
92 93 0.870393 CTATGGATGGTCGCATGCAC 59.130 55.000 19.57 14.38 35.79 4.57
93 94 0.879839 TATGGATGGTCGCATGCACG 60.880 55.000 19.57 1.83 35.79 5.34
94 95 2.511373 GGATGGTCGCATGCACGA 60.511 61.111 19.57 12.37 40.36 4.35
95 96 1.889105 GGATGGTCGCATGCACGAT 60.889 57.895 19.57 16.35 45.06 3.73
96 97 1.439353 GGATGGTCGCATGCACGATT 61.439 55.000 19.57 0.00 45.06 3.34
97 98 0.316442 GATGGTCGCATGCACGATTG 60.316 55.000 19.57 0.00 45.06 2.67
98 99 0.744057 ATGGTCGCATGCACGATTGA 60.744 50.000 19.57 2.18 45.06 2.57
99 100 1.060937 GGTCGCATGCACGATTGAC 59.939 57.895 19.57 14.82 45.06 3.18
100 101 1.361668 GGTCGCATGCACGATTGACT 61.362 55.000 19.57 0.00 45.06 3.41
101 102 0.247419 GTCGCATGCACGATTGACTG 60.247 55.000 19.57 0.00 45.06 3.51
102 103 0.670239 TCGCATGCACGATTGACTGT 60.670 50.000 19.57 0.00 37.09 3.55
103 104 0.998669 CGCATGCACGATTGACTGTA 59.001 50.000 19.57 0.00 34.06 2.74
104 105 1.267038 CGCATGCACGATTGACTGTAC 60.267 52.381 19.57 0.00 34.06 2.90
105 106 1.731709 GCATGCACGATTGACTGTACA 59.268 47.619 14.21 0.00 0.00 2.90
106 107 2.352651 GCATGCACGATTGACTGTACAT 59.647 45.455 14.21 0.00 0.00 2.29
107 108 3.786489 GCATGCACGATTGACTGTACATG 60.786 47.826 14.21 0.00 40.96 3.21
108 109 2.345876 TGCACGATTGACTGTACATGG 58.654 47.619 0.00 0.00 0.00 3.66
109 110 1.062587 GCACGATTGACTGTACATGGC 59.937 52.381 0.00 0.00 0.00 4.40
110 111 2.621338 CACGATTGACTGTACATGGCT 58.379 47.619 0.00 0.00 0.00 4.75
111 112 3.780902 CACGATTGACTGTACATGGCTA 58.219 45.455 0.00 0.00 0.00 3.93
112 113 4.371786 CACGATTGACTGTACATGGCTAT 58.628 43.478 0.00 0.00 0.00 2.97
113 114 4.811024 CACGATTGACTGTACATGGCTATT 59.189 41.667 0.00 0.00 0.00 1.73
114 115 5.983118 CACGATTGACTGTACATGGCTATTA 59.017 40.000 0.00 0.00 0.00 0.98
115 116 5.983720 ACGATTGACTGTACATGGCTATTAC 59.016 40.000 0.00 0.00 0.00 1.89
116 117 6.183360 ACGATTGACTGTACATGGCTATTACT 60.183 38.462 0.00 0.00 0.00 2.24
117 118 7.013942 ACGATTGACTGTACATGGCTATTACTA 59.986 37.037 0.00 0.00 0.00 1.82
118 119 7.326305 CGATTGACTGTACATGGCTATTACTAC 59.674 40.741 0.00 0.00 0.00 2.73
119 120 7.655521 TTGACTGTACATGGCTATTACTACT 57.344 36.000 0.00 0.00 0.00 2.57
120 121 7.655521 TGACTGTACATGGCTATTACTACTT 57.344 36.000 0.00 0.00 0.00 2.24
121 122 7.489160 TGACTGTACATGGCTATTACTACTTG 58.511 38.462 0.00 0.00 0.00 3.16
122 123 7.123697 TGACTGTACATGGCTATTACTACTTGT 59.876 37.037 0.00 0.00 0.00 3.16
123 124 8.529424 ACTGTACATGGCTATTACTACTTGTA 57.471 34.615 0.00 0.00 0.00 2.41
124 125 8.630917 ACTGTACATGGCTATTACTACTTGTAG 58.369 37.037 0.00 6.28 32.08 2.74
125 126 8.529424 TGTACATGGCTATTACTACTTGTAGT 57.471 34.615 16.31 16.31 32.08 2.73
126 127 8.974238 TGTACATGGCTATTACTACTTGTAGTT 58.026 33.333 17.12 4.88 32.08 2.24
127 128 9.245962 GTACATGGCTATTACTACTTGTAGTTG 57.754 37.037 17.12 10.03 32.08 3.16
128 129 6.761714 ACATGGCTATTACTACTTGTAGTTGC 59.238 38.462 17.12 15.04 38.27 4.17
130 131 4.743644 GGCTATTACTACTTGTAGTTGCCG 59.256 45.833 17.12 7.03 44.39 5.69
131 132 4.208666 GCTATTACTACTTGTAGTTGCCGC 59.791 45.833 17.12 11.87 35.09 6.53
132 133 3.663995 TTACTACTTGTAGTTGCCGCA 57.336 42.857 17.12 0.00 32.08 5.69
133 134 2.762535 ACTACTTGTAGTTGCCGCAT 57.237 45.000 7.55 0.00 0.00 4.73
134 135 3.053831 ACTACTTGTAGTTGCCGCATT 57.946 42.857 7.55 0.00 0.00 3.56
135 136 3.408634 ACTACTTGTAGTTGCCGCATTT 58.591 40.909 7.55 0.00 0.00 2.32
136 137 2.989422 ACTTGTAGTTGCCGCATTTC 57.011 45.000 0.00 0.00 0.00 2.17
137 138 2.226330 ACTTGTAGTTGCCGCATTTCA 58.774 42.857 0.00 0.00 0.00 2.69
138 139 2.031157 ACTTGTAGTTGCCGCATTTCAC 60.031 45.455 0.00 0.00 0.00 3.18
139 140 1.890876 TGTAGTTGCCGCATTTCACT 58.109 45.000 0.00 0.00 0.00 3.41
140 141 3.046968 TGTAGTTGCCGCATTTCACTA 57.953 42.857 0.00 0.00 0.00 2.74
141 142 3.000041 TGTAGTTGCCGCATTTCACTAG 59.000 45.455 3.39 0.00 0.00 2.57
142 143 2.472695 AGTTGCCGCATTTCACTAGA 57.527 45.000 0.00 0.00 0.00 2.43
143 144 2.991250 AGTTGCCGCATTTCACTAGAT 58.009 42.857 0.00 0.00 0.00 1.98
144 145 3.347216 AGTTGCCGCATTTCACTAGATT 58.653 40.909 0.00 0.00 0.00 2.40
145 146 4.513442 AGTTGCCGCATTTCACTAGATTA 58.487 39.130 0.00 0.00 0.00 1.75
146 147 5.126067 AGTTGCCGCATTTCACTAGATTAT 58.874 37.500 0.00 0.00 0.00 1.28
147 148 6.288294 AGTTGCCGCATTTCACTAGATTATA 58.712 36.000 0.00 0.00 0.00 0.98
148 149 6.936900 AGTTGCCGCATTTCACTAGATTATAT 59.063 34.615 0.00 0.00 0.00 0.86
149 150 6.968131 TGCCGCATTTCACTAGATTATATC 57.032 37.500 0.00 0.00 0.00 1.63
150 151 6.463360 TGCCGCATTTCACTAGATTATATCA 58.537 36.000 0.00 0.00 0.00 2.15
151 152 6.368791 TGCCGCATTTCACTAGATTATATCAC 59.631 38.462 0.00 0.00 0.00 3.06
152 153 6.183360 GCCGCATTTCACTAGATTATATCACC 60.183 42.308 0.00 0.00 0.00 4.02
153 154 6.035005 CCGCATTTCACTAGATTATATCACCG 59.965 42.308 0.00 0.00 0.00 4.94
154 155 6.586463 CGCATTTCACTAGATTATATCACCGT 59.414 38.462 0.00 0.00 0.00 4.83
155 156 7.116376 CGCATTTCACTAGATTATATCACCGTT 59.884 37.037 0.00 0.00 0.00 4.44
156 157 8.223769 GCATTTCACTAGATTATATCACCGTTG 58.776 37.037 0.00 0.00 0.00 4.10
157 158 9.476202 CATTTCACTAGATTATATCACCGTTGA 57.524 33.333 0.00 0.00 35.73 3.18
158 159 9.698309 ATTTCACTAGATTATATCACCGTTGAG 57.302 33.333 0.00 0.00 34.35 3.02
159 160 7.818997 TCACTAGATTATATCACCGTTGAGT 57.181 36.000 0.00 0.00 34.35 3.41
160 161 8.913487 TCACTAGATTATATCACCGTTGAGTA 57.087 34.615 0.00 0.00 34.35 2.59
161 162 9.346005 TCACTAGATTATATCACCGTTGAGTAA 57.654 33.333 0.00 0.00 34.35 2.24
162 163 9.395707 CACTAGATTATATCACCGTTGAGTAAC 57.604 37.037 0.00 0.00 34.35 2.50
177 178 7.230466 GTTGAGTAACGGTAGTAATGAATGG 57.770 40.000 0.00 0.00 0.00 3.16
178 179 6.778834 TGAGTAACGGTAGTAATGAATGGA 57.221 37.500 0.00 0.00 0.00 3.41
179 180 7.356089 TGAGTAACGGTAGTAATGAATGGAT 57.644 36.000 0.00 0.00 0.00 3.41
180 181 7.431249 TGAGTAACGGTAGTAATGAATGGATC 58.569 38.462 0.00 0.00 0.00 3.36
181 182 7.068962 TGAGTAACGGTAGTAATGAATGGATCA 59.931 37.037 0.00 0.00 43.67 2.92
195 196 7.675161 TGAATGGATCATGGGTATACGATAT 57.325 36.000 0.00 0.00 31.50 1.63
196 197 7.726216 TGAATGGATCATGGGTATACGATATC 58.274 38.462 0.00 0.00 31.50 1.63
197 198 6.672266 ATGGATCATGGGTATACGATATCC 57.328 41.667 11.49 11.49 33.71 2.59
198 199 5.777449 TGGATCATGGGTATACGATATCCT 58.223 41.667 16.05 0.00 34.14 3.24
199 200 6.918033 TGGATCATGGGTATACGATATCCTA 58.082 40.000 16.05 0.00 34.14 2.94
200 201 7.004691 TGGATCATGGGTATACGATATCCTAG 58.995 42.308 16.05 0.00 34.14 3.02
201 202 6.071840 GGATCATGGGTATACGATATCCTAGC 60.072 46.154 0.00 0.00 31.05 3.42
202 203 5.762279 TCATGGGTATACGATATCCTAGCA 58.238 41.667 0.00 0.00 0.00 3.49
203 204 5.593095 TCATGGGTATACGATATCCTAGCAC 59.407 44.000 0.00 0.00 0.00 4.40
204 205 4.925836 TGGGTATACGATATCCTAGCACA 58.074 43.478 0.00 0.00 0.00 4.57
205 206 4.703575 TGGGTATACGATATCCTAGCACAC 59.296 45.833 0.00 0.00 0.00 3.82
206 207 4.703575 GGGTATACGATATCCTAGCACACA 59.296 45.833 0.00 0.00 0.00 3.72
207 208 5.184479 GGGTATACGATATCCTAGCACACAA 59.816 44.000 0.00 0.00 0.00 3.33
208 209 6.294899 GGGTATACGATATCCTAGCACACAAA 60.295 42.308 0.00 0.00 0.00 2.83
209 210 6.807230 GGTATACGATATCCTAGCACACAAAG 59.193 42.308 0.00 0.00 0.00 2.77
210 211 4.060038 ACGATATCCTAGCACACAAAGG 57.940 45.455 0.00 0.00 0.00 3.11
211 212 3.704566 ACGATATCCTAGCACACAAAGGA 59.295 43.478 0.00 0.00 43.38 3.36
213 214 5.163301 ACGATATCCTAGCACACAAAGGATT 60.163 40.000 8.30 0.00 45.82 3.01
214 215 5.178252 CGATATCCTAGCACACAAAGGATTG 59.822 44.000 8.30 0.00 45.82 2.67
228 229 5.738909 CAAAGGATTGTAGGATGACTGACT 58.261 41.667 0.00 0.00 0.00 3.41
229 230 6.878317 CAAAGGATTGTAGGATGACTGACTA 58.122 40.000 0.00 0.00 0.00 2.59
230 231 6.472686 AAGGATTGTAGGATGACTGACTAC 57.527 41.667 0.00 0.00 38.02 2.73
231 232 5.772004 AGGATTGTAGGATGACTGACTACT 58.228 41.667 0.00 0.00 38.27 2.57
232 233 5.830991 AGGATTGTAGGATGACTGACTACTC 59.169 44.000 0.00 0.00 38.27 2.59
233 234 5.010213 GGATTGTAGGATGACTGACTACTCC 59.990 48.000 0.00 0.00 38.27 3.85
234 235 4.864483 TGTAGGATGACTGACTACTCCT 57.136 45.455 0.00 0.00 38.27 3.69
235 236 5.970501 TGTAGGATGACTGACTACTCCTA 57.029 43.478 0.00 0.00 38.27 2.94
236 237 6.517013 TGTAGGATGACTGACTACTCCTAT 57.483 41.667 0.00 0.00 39.93 2.57
237 238 6.535540 TGTAGGATGACTGACTACTCCTATC 58.464 44.000 0.00 0.00 39.93 2.08
238 239 5.922960 AGGATGACTGACTACTCCTATCT 57.077 43.478 0.00 0.00 34.59 1.98
239 240 5.876357 AGGATGACTGACTACTCCTATCTC 58.124 45.833 0.00 0.00 34.59 2.75
240 241 4.693566 GGATGACTGACTACTCCTATCTCG 59.306 50.000 0.00 0.00 0.00 4.04
241 242 4.074627 TGACTGACTACTCCTATCTCGG 57.925 50.000 0.00 0.00 0.00 4.63
242 243 3.455177 TGACTGACTACTCCTATCTCGGT 59.545 47.826 0.00 0.00 0.00 4.69
243 244 3.810941 GACTGACTACTCCTATCTCGGTG 59.189 52.174 0.00 0.00 0.00 4.94
244 245 3.455177 ACTGACTACTCCTATCTCGGTGA 59.545 47.826 0.00 0.00 0.00 4.02
245 246 3.806380 TGACTACTCCTATCTCGGTGAC 58.194 50.000 0.00 0.00 0.00 3.67
257 258 3.271014 GGTGACGACCGACTGCTA 58.729 61.111 0.00 0.00 30.61 3.49
258 259 1.807886 GGTGACGACCGACTGCTAT 59.192 57.895 0.00 0.00 30.61 2.97
259 260 0.248539 GGTGACGACCGACTGCTATC 60.249 60.000 0.00 0.00 30.61 2.08
260 261 0.248539 GTGACGACCGACTGCTATCC 60.249 60.000 0.00 0.00 0.00 2.59
261 262 0.678684 TGACGACCGACTGCTATCCA 60.679 55.000 0.00 0.00 0.00 3.41
262 263 0.669077 GACGACCGACTGCTATCCAT 59.331 55.000 0.00 0.00 0.00 3.41
263 264 0.669077 ACGACCGACTGCTATCCATC 59.331 55.000 0.00 0.00 0.00 3.51
264 265 0.668535 CGACCGACTGCTATCCATCA 59.331 55.000 0.00 0.00 0.00 3.07
265 266 1.600663 CGACCGACTGCTATCCATCAC 60.601 57.143 0.00 0.00 0.00 3.06
266 267 1.409064 GACCGACTGCTATCCATCACA 59.591 52.381 0.00 0.00 0.00 3.58
267 268 1.410517 ACCGACTGCTATCCATCACAG 59.589 52.381 0.00 0.00 36.22 3.66
268 269 1.269988 CCGACTGCTATCCATCACAGG 60.270 57.143 0.00 0.00 34.40 4.00
269 270 1.410517 CGACTGCTATCCATCACAGGT 59.589 52.381 0.00 0.00 34.40 4.00
270 271 2.800985 CGACTGCTATCCATCACAGGTG 60.801 54.545 0.00 0.00 34.40 4.00
271 272 2.169352 GACTGCTATCCATCACAGGTGT 59.831 50.000 0.00 0.00 34.40 4.16
272 273 2.093288 ACTGCTATCCATCACAGGTGTG 60.093 50.000 3.56 3.56 46.91 3.82
284 285 2.440409 ACAGGTGTGAGATCCAAATGC 58.560 47.619 0.00 0.00 0.00 3.56
285 286 2.224843 ACAGGTGTGAGATCCAAATGCA 60.225 45.455 0.00 0.00 0.00 3.96
286 287 2.163010 CAGGTGTGAGATCCAAATGCAC 59.837 50.000 0.00 0.00 0.00 4.57
287 288 1.131126 GGTGTGAGATCCAAATGCACG 59.869 52.381 0.00 0.00 32.39 5.34
288 289 0.804364 TGTGAGATCCAAATGCACGC 59.196 50.000 0.00 0.00 32.39 5.34
289 290 0.804364 GTGAGATCCAAATGCACGCA 59.196 50.000 0.00 0.00 0.00 5.24
290 291 0.804364 TGAGATCCAAATGCACGCAC 59.196 50.000 0.00 0.00 0.00 5.34
291 292 1.089920 GAGATCCAAATGCACGCACT 58.910 50.000 0.00 0.00 0.00 4.40
292 293 1.470098 GAGATCCAAATGCACGCACTT 59.530 47.619 0.00 0.00 0.00 3.16
293 294 1.200716 AGATCCAAATGCACGCACTTG 59.799 47.619 6.24 6.24 33.55 3.16
294 295 1.199789 GATCCAAATGCACGCACTTGA 59.800 47.619 14.29 1.98 35.47 3.02
295 296 0.310543 TCCAAATGCACGCACTTGAC 59.689 50.000 14.29 0.00 35.47 3.18
296 297 0.311790 CCAAATGCACGCACTTGACT 59.688 50.000 14.29 0.00 35.47 3.41
297 298 1.664016 CCAAATGCACGCACTTGACTC 60.664 52.381 14.29 0.00 35.47 3.36
298 299 0.235665 AAATGCACGCACTTGACTCG 59.764 50.000 0.00 0.00 0.00 4.18
299 300 0.880278 AATGCACGCACTTGACTCGT 60.880 50.000 0.00 0.00 36.84 4.18
300 301 0.880278 ATGCACGCACTTGACTCGTT 60.880 50.000 0.00 0.00 33.84 3.85
301 302 1.083401 GCACGCACTTGACTCGTTG 60.083 57.895 0.00 0.00 33.84 4.10
302 303 1.564622 CACGCACTTGACTCGTTGG 59.435 57.895 0.00 0.00 33.84 3.77
303 304 1.143183 ACGCACTTGACTCGTTGGT 59.857 52.632 0.00 0.00 31.89 3.67
304 305 1.151777 ACGCACTTGACTCGTTGGTG 61.152 55.000 0.00 0.00 31.89 4.17
305 306 0.874175 CGCACTTGACTCGTTGGTGA 60.874 55.000 0.00 0.00 0.00 4.02
306 307 0.861837 GCACTTGACTCGTTGGTGAG 59.138 55.000 0.00 0.00 41.86 3.51
314 315 0.464452 CTCGTTGGTGAGTATCCCCC 59.536 60.000 0.00 0.00 0.00 5.40
315 316 0.042131 TCGTTGGTGAGTATCCCCCT 59.958 55.000 0.00 0.00 0.00 4.79
316 317 0.178068 CGTTGGTGAGTATCCCCCTG 59.822 60.000 0.00 0.00 0.00 4.45
317 318 1.580059 GTTGGTGAGTATCCCCCTGA 58.420 55.000 0.00 0.00 0.00 3.86
318 319 2.127708 GTTGGTGAGTATCCCCCTGAT 58.872 52.381 0.00 0.00 37.49 2.90
319 320 3.314693 GTTGGTGAGTATCCCCCTGATA 58.685 50.000 0.00 0.00 34.76 2.15
320 321 3.910627 GTTGGTGAGTATCCCCCTGATAT 59.089 47.826 0.00 0.00 38.21 1.63
321 322 3.791320 TGGTGAGTATCCCCCTGATATC 58.209 50.000 0.00 0.00 38.21 1.63
322 323 3.406152 TGGTGAGTATCCCCCTGATATCT 59.594 47.826 3.98 0.00 38.21 1.98
323 324 3.772025 GGTGAGTATCCCCCTGATATCTG 59.228 52.174 3.98 3.30 38.21 2.90
324 325 4.511112 GGTGAGTATCCCCCTGATATCTGA 60.511 50.000 10.93 0.00 38.21 3.27
325 326 4.464597 GTGAGTATCCCCCTGATATCTGAC 59.535 50.000 10.93 0.82 38.21 3.51
326 327 3.697045 GAGTATCCCCCTGATATCTGACG 59.303 52.174 10.93 1.32 38.21 4.35
327 328 1.270907 ATCCCCCTGATATCTGACGC 58.729 55.000 10.93 0.00 0.00 5.19
328 329 0.188587 TCCCCCTGATATCTGACGCT 59.811 55.000 10.93 0.00 0.00 5.07
329 330 1.051812 CCCCCTGATATCTGACGCTT 58.948 55.000 10.93 0.00 0.00 4.68
330 331 1.417890 CCCCCTGATATCTGACGCTTT 59.582 52.381 10.93 0.00 0.00 3.51
331 332 2.487934 CCCCTGATATCTGACGCTTTG 58.512 52.381 10.93 0.00 0.00 2.77
332 333 2.487934 CCCTGATATCTGACGCTTTGG 58.512 52.381 10.93 0.00 0.00 3.28
333 334 2.487934 CCTGATATCTGACGCTTTGGG 58.512 52.381 10.93 0.00 0.00 4.12
334 335 2.158900 CCTGATATCTGACGCTTTGGGT 60.159 50.000 10.93 0.00 0.00 4.51
335 336 3.535561 CTGATATCTGACGCTTTGGGTT 58.464 45.455 3.98 0.00 0.00 4.11
336 337 3.270027 TGATATCTGACGCTTTGGGTTG 58.730 45.455 3.98 0.00 0.00 3.77
337 338 3.055458 TGATATCTGACGCTTTGGGTTGA 60.055 43.478 3.98 0.00 0.00 3.18
338 339 2.270352 ATCTGACGCTTTGGGTTGAA 57.730 45.000 0.00 0.00 0.00 2.69
339 340 1.593196 TCTGACGCTTTGGGTTGAAG 58.407 50.000 0.00 0.00 0.00 3.02
340 341 1.134220 TCTGACGCTTTGGGTTGAAGT 60.134 47.619 0.00 0.00 0.00 3.01
341 342 1.676006 CTGACGCTTTGGGTTGAAGTT 59.324 47.619 0.00 0.00 0.00 2.66
342 343 2.096248 TGACGCTTTGGGTTGAAGTTT 58.904 42.857 0.00 0.00 0.00 2.66
343 344 2.098443 TGACGCTTTGGGTTGAAGTTTC 59.902 45.455 0.00 0.00 0.00 2.78
344 345 2.096248 ACGCTTTGGGTTGAAGTTTCA 58.904 42.857 0.00 0.00 34.92 2.69
345 346 2.494073 ACGCTTTGGGTTGAAGTTTCAA 59.506 40.909 3.28 3.28 44.31 2.69
355 356 2.980568 TGAAGTTTCAACCTGACGTGT 58.019 42.857 0.00 0.00 33.55 4.49
356 357 3.340034 TGAAGTTTCAACCTGACGTGTT 58.660 40.909 0.00 0.00 33.55 3.32
357 358 3.126171 TGAAGTTTCAACCTGACGTGTTG 59.874 43.478 10.18 10.18 43.46 3.33
358 359 2.706890 AGTTTCAACCTGACGTGTTGT 58.293 42.857 14.63 0.00 42.82 3.32
359 360 7.092517 TGAAGTTTCAACCTGACGTGTTGTC 62.093 44.000 14.63 7.25 42.82 3.18
366 367 3.340789 GACGTGTTGTCCCTTGCC 58.659 61.111 0.00 0.00 42.04 4.52
367 368 2.203294 ACGTGTTGTCCCTTGCCC 60.203 61.111 0.00 0.00 0.00 5.36
368 369 2.983592 CGTGTTGTCCCTTGCCCC 60.984 66.667 0.00 0.00 0.00 5.80
369 370 2.197324 GTGTTGTCCCTTGCCCCA 59.803 61.111 0.00 0.00 0.00 4.96
370 371 1.228862 GTGTTGTCCCTTGCCCCAT 60.229 57.895 0.00 0.00 0.00 4.00
371 372 0.831711 GTGTTGTCCCTTGCCCCATT 60.832 55.000 0.00 0.00 0.00 3.16
372 373 0.831288 TGTTGTCCCTTGCCCCATTG 60.831 55.000 0.00 0.00 0.00 2.82
373 374 0.541764 GTTGTCCCTTGCCCCATTGA 60.542 55.000 0.00 0.00 0.00 2.57
374 375 0.541764 TTGTCCCTTGCCCCATTGAC 60.542 55.000 0.00 0.00 0.00 3.18
375 376 1.384191 GTCCCTTGCCCCATTGACT 59.616 57.895 0.00 0.00 0.00 3.41
376 377 0.251787 GTCCCTTGCCCCATTGACTT 60.252 55.000 0.00 0.00 0.00 3.01
377 378 0.039618 TCCCTTGCCCCATTGACTTC 59.960 55.000 0.00 0.00 0.00 3.01
378 379 0.040204 CCCTTGCCCCATTGACTTCT 59.960 55.000 0.00 0.00 0.00 2.85
379 380 1.180029 CCTTGCCCCATTGACTTCTG 58.820 55.000 0.00 0.00 0.00 3.02
380 381 1.180029 CTTGCCCCATTGACTTCTGG 58.820 55.000 0.00 0.00 0.00 3.86
381 382 0.776810 TTGCCCCATTGACTTCTGGA 59.223 50.000 0.00 0.00 34.24 3.86
382 383 0.038166 TGCCCCATTGACTTCTGGAC 59.962 55.000 0.00 0.00 34.24 4.02
383 384 0.681243 GCCCCATTGACTTCTGGACC 60.681 60.000 0.00 0.00 34.24 4.46
384 385 0.392998 CCCCATTGACTTCTGGACCG 60.393 60.000 0.00 0.00 34.24 4.79
385 386 1.026718 CCCATTGACTTCTGGACCGC 61.027 60.000 0.00 0.00 34.24 5.68
386 387 0.321564 CCATTGACTTCTGGACCGCA 60.322 55.000 0.00 0.00 34.24 5.69
387 388 0.798776 CATTGACTTCTGGACCGCAC 59.201 55.000 0.00 0.00 0.00 5.34
388 389 0.687354 ATTGACTTCTGGACCGCACT 59.313 50.000 0.00 0.00 0.00 4.40
389 390 0.468226 TTGACTTCTGGACCGCACTT 59.532 50.000 0.00 0.00 0.00 3.16
390 391 0.468226 TGACTTCTGGACCGCACTTT 59.532 50.000 0.00 0.00 0.00 2.66
391 392 1.134220 TGACTTCTGGACCGCACTTTT 60.134 47.619 0.00 0.00 0.00 2.27
392 393 1.264288 GACTTCTGGACCGCACTTTTG 59.736 52.381 0.00 0.00 0.00 2.44
393 394 1.134220 ACTTCTGGACCGCACTTTTGA 60.134 47.619 0.00 0.00 0.00 2.69
394 395 1.532868 CTTCTGGACCGCACTTTTGAG 59.467 52.381 0.00 0.00 0.00 3.02
395 396 0.468226 TCTGGACCGCACTTTTGAGT 59.532 50.000 0.00 0.00 0.00 3.41
396 397 0.588252 CTGGACCGCACTTTTGAGTG 59.412 55.000 2.29 2.29 42.32 3.51
397 398 0.817634 TGGACCGCACTTTTGAGTGG 60.818 55.000 8.46 0.00 44.52 4.00
398 399 1.282875 GACCGCACTTTTGAGTGGC 59.717 57.895 8.46 1.04 43.10 5.01
399 400 1.152963 ACCGCACTTTTGAGTGGCT 60.153 52.632 8.46 0.00 43.10 4.75
400 401 1.283793 CCGCACTTTTGAGTGGCTG 59.716 57.895 8.46 0.00 39.97 4.85
401 402 1.283793 CGCACTTTTGAGTGGCTGG 59.716 57.895 8.46 0.00 39.97 4.85
402 403 1.662044 GCACTTTTGAGTGGCTGGG 59.338 57.895 8.46 0.00 39.97 4.45
403 404 1.662044 CACTTTTGAGTGGCTGGGC 59.338 57.895 0.00 0.00 36.24 5.36
413 414 2.037847 GGCTGGGCCTTTGGATGT 59.962 61.111 4.53 0.00 46.69 3.06
414 415 2.353610 GGCTGGGCCTTTGGATGTG 61.354 63.158 4.53 0.00 46.69 3.21
415 416 3.010413 GCTGGGCCTTTGGATGTGC 62.010 63.158 4.53 0.00 0.00 4.57
416 417 2.283821 TGGGCCTTTGGATGTGCC 60.284 61.111 4.53 0.00 43.26 5.01
417 418 2.283821 GGGCCTTTGGATGTGCCA 60.284 61.111 0.84 0.00 45.83 4.92
436 437 4.772886 CCATATGGCCCTAGGTATAACC 57.227 50.000 9.29 1.68 38.99 2.85
448 449 3.832615 GGTATAACCTCGTCAACCCAT 57.167 47.619 0.00 0.00 34.73 4.00
449 450 3.463944 GGTATAACCTCGTCAACCCATG 58.536 50.000 0.00 0.00 34.73 3.66
450 451 3.133362 GGTATAACCTCGTCAACCCATGA 59.867 47.826 0.00 0.00 34.73 3.07
451 452 3.992943 ATAACCTCGTCAACCCATGAA 57.007 42.857 0.00 0.00 40.50 2.57
452 453 1.892209 AACCTCGTCAACCCATGAAC 58.108 50.000 0.00 0.00 40.50 3.18
453 454 0.762418 ACCTCGTCAACCCATGAACA 59.238 50.000 0.00 0.00 40.50 3.18
454 455 1.351017 ACCTCGTCAACCCATGAACAT 59.649 47.619 0.00 0.00 40.50 2.71
455 456 2.224769 ACCTCGTCAACCCATGAACATT 60.225 45.455 0.00 0.00 40.50 2.71
456 457 2.819608 CCTCGTCAACCCATGAACATTT 59.180 45.455 0.00 0.00 40.50 2.32
457 458 4.006989 CCTCGTCAACCCATGAACATTTA 58.993 43.478 0.00 0.00 40.50 1.40
458 459 4.640201 CCTCGTCAACCCATGAACATTTAT 59.360 41.667 0.00 0.00 40.50 1.40
459 460 5.125417 CCTCGTCAACCCATGAACATTTATT 59.875 40.000 0.00 0.00 40.50 1.40
460 461 6.189677 TCGTCAACCCATGAACATTTATTC 57.810 37.500 0.00 0.00 40.50 1.75
461 462 5.943416 TCGTCAACCCATGAACATTTATTCT 59.057 36.000 0.00 0.00 40.50 2.40
462 463 7.106890 TCGTCAACCCATGAACATTTATTCTA 58.893 34.615 0.00 0.00 40.50 2.10
463 464 7.608376 TCGTCAACCCATGAACATTTATTCTAA 59.392 33.333 0.00 0.00 40.50 2.10
464 465 7.696453 CGTCAACCCATGAACATTTATTCTAAC 59.304 37.037 0.00 0.00 40.50 2.34
465 466 8.519526 GTCAACCCATGAACATTTATTCTAACA 58.480 33.333 0.00 0.00 40.50 2.41
466 467 8.519526 TCAACCCATGAACATTTATTCTAACAC 58.480 33.333 0.00 0.00 34.30 3.32
467 468 8.303156 CAACCCATGAACATTTATTCTAACACA 58.697 33.333 0.00 0.00 0.00 3.72
468 469 7.826690 ACCCATGAACATTTATTCTAACACAC 58.173 34.615 0.00 0.00 0.00 3.82
469 470 7.450014 ACCCATGAACATTTATTCTAACACACA 59.550 33.333 0.00 0.00 0.00 3.72
470 471 8.469200 CCCATGAACATTTATTCTAACACACAT 58.531 33.333 0.00 0.00 0.00 3.21
471 472 9.292846 CCATGAACATTTATTCTAACACACATG 57.707 33.333 0.00 0.00 0.00 3.21
474 475 9.891828 TGAACATTTATTCTAACACACATGAAC 57.108 29.630 0.00 0.00 0.00 3.18
475 476 9.891828 GAACATTTATTCTAACACACATGAACA 57.108 29.630 0.00 0.00 0.00 3.18
477 478 9.677567 ACATTTATTCTAACACACATGAACAAC 57.322 29.630 0.00 0.00 0.00 3.32
478 479 9.676195 CATTTATTCTAACACACATGAACAACA 57.324 29.630 0.00 0.00 0.00 3.33
482 483 8.801715 ATTCTAACACACATGAACAACAATTC 57.198 30.769 0.00 0.00 0.00 2.17
483 484 7.566760 TCTAACACACATGAACAACAATTCT 57.433 32.000 0.00 0.00 0.00 2.40
484 485 8.669946 TCTAACACACATGAACAACAATTCTA 57.330 30.769 0.00 0.00 0.00 2.10
485 486 9.114952 TCTAACACACATGAACAACAATTCTAA 57.885 29.630 0.00 0.00 0.00 2.10
486 487 9.729023 CTAACACACATGAACAACAATTCTAAA 57.271 29.630 0.00 0.00 0.00 1.85
487 488 8.994429 AACACACATGAACAACAATTCTAAAA 57.006 26.923 0.00 0.00 0.00 1.52
488 489 8.994429 ACACACATGAACAACAATTCTAAAAA 57.006 26.923 0.00 0.00 0.00 1.94
553 554 8.996988 TGTAGTGAACAATTTTCAAATACGAC 57.003 30.769 0.00 0.00 34.29 4.34
554 555 8.613482 TGTAGTGAACAATTTTCAAATACGACA 58.387 29.630 0.00 0.00 34.29 4.35
555 556 7.908193 AGTGAACAATTTTCAAATACGACAC 57.092 32.000 0.00 0.00 0.00 3.67
556 557 6.631238 AGTGAACAATTTTCAAATACGACACG 59.369 34.615 0.00 0.00 0.00 4.49
557 558 6.629649 GTGAACAATTTTCAAATACGACACGA 59.370 34.615 0.00 0.00 0.00 4.35
558 559 7.164498 GTGAACAATTTTCAAATACGACACGAA 59.836 33.333 0.00 0.00 0.00 3.85
559 560 6.963017 ACAATTTTCAAATACGACACGAAC 57.037 33.333 0.00 0.00 0.00 3.95
560 561 5.910723 ACAATTTTCAAATACGACACGAACC 59.089 36.000 0.00 0.00 0.00 3.62
561 562 5.676532 ATTTTCAAATACGACACGAACCA 57.323 34.783 0.00 0.00 0.00 3.67
562 563 5.676532 TTTTCAAATACGACACGAACCAT 57.323 34.783 0.00 0.00 0.00 3.55
563 564 5.676532 TTTCAAATACGACACGAACCATT 57.323 34.783 0.00 0.00 0.00 3.16
564 565 5.676532 TTCAAATACGACACGAACCATTT 57.323 34.783 0.00 0.00 0.00 2.32
565 566 5.676532 TCAAATACGACACGAACCATTTT 57.323 34.783 0.00 0.00 0.00 1.82
566 567 6.062434 TCAAATACGACACGAACCATTTTT 57.938 33.333 0.00 0.00 0.00 1.94
596 597 8.970691 ACATGAACAATTAGTTTTAGATGCAC 57.029 30.769 0.00 0.00 41.51 4.57
597 598 7.750458 ACATGAACAATTAGTTTTAGATGCACG 59.250 33.333 0.00 0.00 41.51 5.34
598 599 7.428282 TGAACAATTAGTTTTAGATGCACGA 57.572 32.000 0.00 0.00 41.51 4.35
599 600 7.866729 TGAACAATTAGTTTTAGATGCACGAA 58.133 30.769 0.00 0.00 41.51 3.85
600 601 7.801315 TGAACAATTAGTTTTAGATGCACGAAC 59.199 33.333 0.00 0.00 41.51 3.95
601 602 7.197071 ACAATTAGTTTTAGATGCACGAACA 57.803 32.000 0.00 0.00 0.00 3.18
602 603 7.816640 ACAATTAGTTTTAGATGCACGAACAT 58.183 30.769 0.00 0.00 0.00 2.71
603 604 8.296713 ACAATTAGTTTTAGATGCACGAACATT 58.703 29.630 0.00 0.00 0.00 2.71
604 605 9.128107 CAATTAGTTTTAGATGCACGAACATTT 57.872 29.630 0.00 0.00 0.00 2.32
605 606 9.691362 AATTAGTTTTAGATGCACGAACATTTT 57.309 25.926 0.00 0.00 0.00 1.82
606 607 9.691362 ATTAGTTTTAGATGCACGAACATTTTT 57.309 25.926 0.00 0.00 0.00 1.94
609 610 9.691362 AGTTTTAGATGCACGAACATTTTTATT 57.309 25.926 0.00 0.00 0.00 1.40
614 615 8.586570 AGATGCACGAACATTTTTATTTTTGA 57.413 26.923 0.00 0.00 0.00 2.69
615 616 9.206870 AGATGCACGAACATTTTTATTTTTGAT 57.793 25.926 0.00 0.00 0.00 2.57
683 684 8.975663 AATTATTAAAGGACACTAGTAAGCCC 57.024 34.615 0.00 0.00 0.00 5.19
684 685 7.499200 TTATTAAAGGACACTAGTAAGCCCA 57.501 36.000 0.00 0.00 0.00 5.36
685 686 6.576778 ATTAAAGGACACTAGTAAGCCCAT 57.423 37.500 0.00 0.00 0.00 4.00
686 687 4.929146 AAAGGACACTAGTAAGCCCATT 57.071 40.909 0.00 0.00 0.00 3.16
687 688 4.929146 AAGGACACTAGTAAGCCCATTT 57.071 40.909 0.00 0.00 0.00 2.32
688 689 4.489306 AGGACACTAGTAAGCCCATTTC 57.511 45.455 0.00 0.00 0.00 2.17
689 690 4.104831 AGGACACTAGTAAGCCCATTTCT 58.895 43.478 0.00 0.00 0.00 2.52
690 691 5.278061 AGGACACTAGTAAGCCCATTTCTA 58.722 41.667 0.00 0.00 0.00 2.10
691 692 5.724854 AGGACACTAGTAAGCCCATTTCTAA 59.275 40.000 0.00 0.00 0.00 2.10
692 693 6.214819 AGGACACTAGTAAGCCCATTTCTAAA 59.785 38.462 0.00 0.00 0.00 1.85
693 694 6.882678 GGACACTAGTAAGCCCATTTCTAAAA 59.117 38.462 0.00 0.00 0.00 1.52
694 695 7.556635 GGACACTAGTAAGCCCATTTCTAAAAT 59.443 37.037 0.00 0.00 0.00 1.82
695 696 9.609346 GACACTAGTAAGCCCATTTCTAAAATA 57.391 33.333 0.00 0.00 0.00 1.40
696 697 9.969001 ACACTAGTAAGCCCATTTCTAAAATAA 57.031 29.630 0.00 0.00 0.00 1.40
743 744 8.541133 TTGTTTACAAAAATTGCTAATAGGCC 57.459 30.769 0.00 0.00 32.11 5.19
744 745 6.809196 TGTTTACAAAAATTGCTAATAGGCCG 59.191 34.615 0.00 0.00 0.00 6.13
745 746 3.780902 ACAAAAATTGCTAATAGGCCGC 58.219 40.909 0.00 0.00 0.00 6.53
746 747 3.194542 ACAAAAATTGCTAATAGGCCGCA 59.805 39.130 0.00 0.00 0.00 5.69
747 748 3.436700 AAAATTGCTAATAGGCCGCAC 57.563 42.857 1.34 0.00 32.71 5.34
748 749 2.051334 AATTGCTAATAGGCCGCACA 57.949 45.000 1.34 0.00 32.71 4.57
749 750 1.597742 ATTGCTAATAGGCCGCACAG 58.402 50.000 1.34 0.00 32.71 3.66
750 751 0.251916 TTGCTAATAGGCCGCACAGT 59.748 50.000 1.34 0.00 32.71 3.55
751 752 1.116308 TGCTAATAGGCCGCACAGTA 58.884 50.000 0.00 0.00 0.00 2.74
752 753 1.068588 TGCTAATAGGCCGCACAGTAG 59.931 52.381 0.00 0.00 0.00 2.57
753 754 1.605712 GCTAATAGGCCGCACAGTAGG 60.606 57.143 0.00 0.00 0.00 3.18
760 761 4.393155 CGCACAGTAGGCAGCCCA 62.393 66.667 8.22 0.00 0.00 5.36
761 762 2.273449 GCACAGTAGGCAGCCCAT 59.727 61.111 8.22 0.00 0.00 4.00
762 763 1.379044 GCACAGTAGGCAGCCCATT 60.379 57.895 8.22 0.00 0.00 3.16
763 764 0.107214 GCACAGTAGGCAGCCCATTA 60.107 55.000 8.22 0.00 0.00 1.90
764 765 1.681780 GCACAGTAGGCAGCCCATTAA 60.682 52.381 8.22 0.00 0.00 1.40
765 766 2.936202 CACAGTAGGCAGCCCATTAAT 58.064 47.619 8.22 0.00 0.00 1.40
766 767 2.620115 CACAGTAGGCAGCCCATTAATG 59.380 50.000 8.22 8.58 0.00 1.90
767 768 2.242196 ACAGTAGGCAGCCCATTAATGT 59.758 45.455 8.22 7.15 0.00 2.71
768 769 3.290710 CAGTAGGCAGCCCATTAATGTT 58.709 45.455 8.22 0.00 0.00 2.71
769 770 3.701040 CAGTAGGCAGCCCATTAATGTTT 59.299 43.478 8.22 0.00 0.00 2.83
770 771 4.160252 CAGTAGGCAGCCCATTAATGTTTT 59.840 41.667 8.22 0.00 0.00 2.43
771 772 4.777366 AGTAGGCAGCCCATTAATGTTTTT 59.223 37.500 8.22 0.00 0.00 1.94
786 787 2.094904 TTTTTATGCCGCGAGCTCC 58.905 52.632 8.23 0.00 44.23 4.70
787 788 1.373590 TTTTTATGCCGCGAGCTCCC 61.374 55.000 8.23 0.00 44.23 4.30
788 789 3.750373 TTTATGCCGCGAGCTCCCC 62.750 63.158 8.23 0.00 44.23 4.81
805 806 0.949105 CCCGTCTCACCGGTTTTCTG 60.949 60.000 2.97 0.00 46.66 3.02
823 824 0.463654 TGCCTCCATGTATTGCGGAC 60.464 55.000 0.00 0.00 0.00 4.79
829 830 1.152963 ATGTATTGCGGACAGGGCC 60.153 57.895 0.00 0.00 0.00 5.80
881 882 2.095161 AGAAAAGTAGAGCGACTGACCG 60.095 50.000 0.00 0.00 0.00 4.79
969 971 0.672401 GAACACGCCGAAATCCCTCA 60.672 55.000 0.00 0.00 0.00 3.86
1022 1027 2.105128 AGCACTGCCGTATCTCGC 59.895 61.111 0.00 0.00 38.35 5.03
1024 1029 2.655364 CACTGCCGTATCTCGCCG 60.655 66.667 0.00 0.00 38.35 6.46
1241 1471 0.040336 CACGCGATCGCCTACTACAT 60.040 55.000 32.63 6.72 39.84 2.29
1782 2012 2.890474 GTCCGCCGCATCGTCAAT 60.890 61.111 0.00 0.00 0.00 2.57
1857 2087 4.591929 AGTAAGAAACTCCTAGCTCGTCT 58.408 43.478 0.00 0.00 30.33 4.18
1897 2127 2.358898 GCGGTATCTTCAATGCCATTGT 59.641 45.455 16.55 0.69 41.02 2.71
1900 2130 4.142403 CGGTATCTTCAATGCCATTGTTGT 60.142 41.667 16.55 5.26 41.02 3.32
1907 2137 2.373540 ATGCCATTGTTGTGCACATC 57.626 45.000 22.39 20.44 37.92 3.06
2225 2464 2.844146 CTGTTCGTGAACGCGACC 59.156 61.111 15.93 4.00 43.94 4.79
2837 3076 4.537433 GAGCCCCTACAGCCGCTG 62.537 72.222 19.08 19.08 37.52 5.18
2922 3162 2.602568 CCCCTGCTTTGCTGCCTT 60.603 61.111 0.00 0.00 0.00 4.35
3162 3411 3.807631 ATGTGCGTCAGTGCGTGGT 62.808 57.895 8.39 0.00 37.81 4.16
3163 3412 3.269347 GTGCGTCAGTGCGTGGTT 61.269 61.111 8.39 0.00 37.81 3.67
3164 3413 3.268603 TGCGTCAGTGCGTGGTTG 61.269 61.111 8.39 0.00 37.81 3.77
3165 3414 4.666532 GCGTCAGTGCGTGGTTGC 62.667 66.667 8.39 0.00 0.00 4.17
3166 3415 2.967076 CGTCAGTGCGTGGTTGCT 60.967 61.111 0.00 0.00 35.36 3.91
3169 3418 0.941542 GTCAGTGCGTGGTTGCTTTA 59.058 50.000 0.00 0.00 35.36 1.85
3176 3425 2.739913 TGCGTGGTTGCTTTACTGTATC 59.260 45.455 0.00 0.00 35.36 2.24
3185 3434 4.820897 TGCTTTACTGTATCTGACACTGG 58.179 43.478 0.00 0.00 33.31 4.00
3271 3524 1.905215 AGTGCACAGCAGAGTCCTATT 59.095 47.619 21.04 0.00 40.08 1.73
3276 3529 3.866066 GCACAGCAGAGTCCTATTGTGAA 60.866 47.826 14.98 0.00 37.76 3.18
3283 3536 3.003480 GAGTCCTATTGTGAACAGTGGC 58.997 50.000 0.00 0.00 0.00 5.01
3302 3555 2.481471 GCCAGCGGCTAATCCCAAC 61.481 63.158 0.26 0.00 46.69 3.77
3436 3689 4.900054 AGTATACTAGCAACGAGGGGAAAT 59.100 41.667 2.75 0.00 0.00 2.17
3460 3713 5.423931 TGAGTGCATCTACATACCCTTGTAA 59.576 40.000 0.00 0.00 31.96 2.41
3600 3853 1.093159 GCGACGTCTCCTCCTTCTTA 58.907 55.000 14.70 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.348775 ATAAGCAGGGAGGAGGGCAC 61.349 60.000 0.00 0.00 0.00 5.01
13 14 1.280421 CATATAAGCAGGGAGGAGGGC 59.720 57.143 0.00 0.00 0.00 5.19
14 15 1.912043 CCATATAAGCAGGGAGGAGGG 59.088 57.143 0.00 0.00 0.00 4.30
15 16 2.304180 CACCATATAAGCAGGGAGGAGG 59.696 54.545 0.00 0.00 0.00 4.30
16 17 2.975489 ACACCATATAAGCAGGGAGGAG 59.025 50.000 0.00 0.00 0.00 3.69
17 18 2.705658 CACACCATATAAGCAGGGAGGA 59.294 50.000 0.00 0.00 0.00 3.71
18 19 2.811873 GCACACCATATAAGCAGGGAGG 60.812 54.545 0.00 0.00 0.00 4.30
19 20 2.105477 AGCACACCATATAAGCAGGGAG 59.895 50.000 0.00 0.00 0.00 4.30
20 21 2.126882 AGCACACCATATAAGCAGGGA 58.873 47.619 0.00 0.00 0.00 4.20
21 22 2.645838 AGCACACCATATAAGCAGGG 57.354 50.000 0.00 0.00 0.00 4.45
22 23 3.324846 TCCTAGCACACCATATAAGCAGG 59.675 47.826 0.00 0.00 0.00 4.85
23 24 4.562347 CCTCCTAGCACACCATATAAGCAG 60.562 50.000 0.00 0.00 0.00 4.24
24 25 3.324846 CCTCCTAGCACACCATATAAGCA 59.675 47.826 0.00 0.00 0.00 3.91
25 26 3.307059 CCCTCCTAGCACACCATATAAGC 60.307 52.174 0.00 0.00 0.00 3.09
26 27 3.261897 CCCCTCCTAGCACACCATATAAG 59.738 52.174 0.00 0.00 0.00 1.73
27 28 3.248024 CCCCTCCTAGCACACCATATAA 58.752 50.000 0.00 0.00 0.00 0.98
28 29 2.181419 ACCCCTCCTAGCACACCATATA 59.819 50.000 0.00 0.00 0.00 0.86
29 30 1.061346 ACCCCTCCTAGCACACCATAT 60.061 52.381 0.00 0.00 0.00 1.78
30 31 0.341961 ACCCCTCCTAGCACACCATA 59.658 55.000 0.00 0.00 0.00 2.74
31 32 1.082954 ACCCCTCCTAGCACACCAT 59.917 57.895 0.00 0.00 0.00 3.55
32 33 1.918293 CACCCCTCCTAGCACACCA 60.918 63.158 0.00 0.00 0.00 4.17
33 34 2.990479 CACCCCTCCTAGCACACC 59.010 66.667 0.00 0.00 0.00 4.16
34 35 2.269241 GCACCCCTCCTAGCACAC 59.731 66.667 0.00 0.00 0.00 3.82
35 36 3.009115 GGCACCCCTCCTAGCACA 61.009 66.667 0.00 0.00 0.00 4.57
36 37 4.162690 CGGCACCCCTCCTAGCAC 62.163 72.222 0.00 0.00 0.00 4.40
37 38 2.808761 TTACGGCACCCCTCCTAGCA 62.809 60.000 0.00 0.00 0.00 3.49
38 39 1.408453 ATTACGGCACCCCTCCTAGC 61.408 60.000 0.00 0.00 0.00 3.42
39 40 0.393077 CATTACGGCACCCCTCCTAG 59.607 60.000 0.00 0.00 0.00 3.02
40 41 1.052124 CCATTACGGCACCCCTCCTA 61.052 60.000 0.00 0.00 0.00 2.94
41 42 2.375345 CCATTACGGCACCCCTCCT 61.375 63.158 0.00 0.00 0.00 3.69
42 43 2.192175 CCATTACGGCACCCCTCC 59.808 66.667 0.00 0.00 0.00 4.30
43 44 2.192175 CCCATTACGGCACCCCTC 59.808 66.667 0.00 0.00 0.00 4.30
44 45 2.235761 AACCCATTACGGCACCCCT 61.236 57.895 0.00 0.00 0.00 4.79
45 46 2.049767 CAACCCATTACGGCACCCC 61.050 63.158 0.00 0.00 0.00 4.95
46 47 2.049767 CCAACCCATTACGGCACCC 61.050 63.158 0.00 0.00 0.00 4.61
47 48 0.035247 TACCAACCCATTACGGCACC 60.035 55.000 0.00 0.00 0.00 5.01
48 49 2.047002 ATACCAACCCATTACGGCAC 57.953 50.000 0.00 0.00 0.00 5.01
49 50 3.928005 TTATACCAACCCATTACGGCA 57.072 42.857 0.00 0.00 0.00 5.69
50 51 4.557895 GCATTTATACCAACCCATTACGGC 60.558 45.833 0.00 0.00 0.00 5.68
51 52 4.825085 AGCATTTATACCAACCCATTACGG 59.175 41.667 0.00 0.00 0.00 4.02
52 53 7.361713 CCATAGCATTTATACCAACCCATTACG 60.362 40.741 0.00 0.00 0.00 3.18
53 54 7.668052 TCCATAGCATTTATACCAACCCATTAC 59.332 37.037 0.00 0.00 0.00 1.89
54 55 7.760607 TCCATAGCATTTATACCAACCCATTA 58.239 34.615 0.00 0.00 0.00 1.90
55 56 6.619464 TCCATAGCATTTATACCAACCCATT 58.381 36.000 0.00 0.00 0.00 3.16
56 57 6.212840 TCCATAGCATTTATACCAACCCAT 57.787 37.500 0.00 0.00 0.00 4.00
57 58 5.654901 TCCATAGCATTTATACCAACCCA 57.345 39.130 0.00 0.00 0.00 4.51
58 59 5.418840 CCATCCATAGCATTTATACCAACCC 59.581 44.000 0.00 0.00 0.00 4.11
59 60 6.010219 ACCATCCATAGCATTTATACCAACC 58.990 40.000 0.00 0.00 0.00 3.77
60 61 6.128282 CGACCATCCATAGCATTTATACCAAC 60.128 42.308 0.00 0.00 0.00 3.77
61 62 5.937540 CGACCATCCATAGCATTTATACCAA 59.062 40.000 0.00 0.00 0.00 3.67
62 63 5.487433 CGACCATCCATAGCATTTATACCA 58.513 41.667 0.00 0.00 0.00 3.25
63 64 4.332819 GCGACCATCCATAGCATTTATACC 59.667 45.833 0.00 0.00 0.00 2.73
64 65 4.935205 TGCGACCATCCATAGCATTTATAC 59.065 41.667 0.00 0.00 32.43 1.47
65 66 5.159273 TGCGACCATCCATAGCATTTATA 57.841 39.130 0.00 0.00 32.43 0.98
66 67 4.019792 TGCGACCATCCATAGCATTTAT 57.980 40.909 0.00 0.00 32.43 1.40
67 68 3.483808 TGCGACCATCCATAGCATTTA 57.516 42.857 0.00 0.00 32.43 1.40
68 69 2.346766 TGCGACCATCCATAGCATTT 57.653 45.000 0.00 0.00 32.43 2.32
69 70 2.156917 CATGCGACCATCCATAGCATT 58.843 47.619 0.00 0.00 44.97 3.56
71 72 0.886043 GCATGCGACCATCCATAGCA 60.886 55.000 0.00 0.00 42.28 3.49
72 73 0.886043 TGCATGCGACCATCCATAGC 60.886 55.000 14.09 0.00 0.00 2.97
73 74 0.870393 GTGCATGCGACCATCCATAG 59.130 55.000 14.09 0.00 0.00 2.23
74 75 0.879839 CGTGCATGCGACCATCCATA 60.880 55.000 14.09 0.00 0.00 2.74
75 76 2.182181 CGTGCATGCGACCATCCAT 61.182 57.895 14.09 0.00 0.00 3.41
76 77 2.591929 ATCGTGCATGCGACCATCCA 62.592 55.000 14.09 0.00 43.99 3.41
77 78 1.439353 AATCGTGCATGCGACCATCC 61.439 55.000 14.09 0.00 43.99 3.51
78 79 0.316442 CAATCGTGCATGCGACCATC 60.316 55.000 14.09 0.00 43.99 3.51
79 80 0.744057 TCAATCGTGCATGCGACCAT 60.744 50.000 14.09 4.02 43.99 3.55
80 81 1.375268 TCAATCGTGCATGCGACCA 60.375 52.632 14.09 1.61 43.99 4.02
81 82 1.060937 GTCAATCGTGCATGCGACC 59.939 57.895 14.09 2.31 43.99 4.79
82 83 0.247419 CAGTCAATCGTGCATGCGAC 60.247 55.000 14.09 12.71 43.99 5.19
83 84 0.670239 ACAGTCAATCGTGCATGCGA 60.670 50.000 14.09 5.38 45.32 5.10
84 85 0.998669 TACAGTCAATCGTGCATGCG 59.001 50.000 14.09 0.00 0.00 4.73
85 86 1.731709 TGTACAGTCAATCGTGCATGC 59.268 47.619 11.82 11.82 0.00 4.06
86 87 3.931824 CATGTACAGTCAATCGTGCATG 58.068 45.455 0.33 0.00 45.41 4.06
87 88 2.938451 CCATGTACAGTCAATCGTGCAT 59.062 45.455 0.33 0.00 38.74 3.96
88 89 2.345876 CCATGTACAGTCAATCGTGCA 58.654 47.619 0.33 0.00 32.20 4.57
89 90 1.062587 GCCATGTACAGTCAATCGTGC 59.937 52.381 0.33 0.00 0.00 5.34
90 91 2.621338 AGCCATGTACAGTCAATCGTG 58.379 47.619 0.33 0.00 0.00 4.35
91 92 4.672587 ATAGCCATGTACAGTCAATCGT 57.327 40.909 0.33 0.00 0.00 3.73
92 93 6.216569 AGTAATAGCCATGTACAGTCAATCG 58.783 40.000 0.33 0.00 0.00 3.34
93 94 8.361139 AGTAGTAATAGCCATGTACAGTCAATC 58.639 37.037 0.33 0.00 0.00 2.67
94 95 8.251383 AGTAGTAATAGCCATGTACAGTCAAT 57.749 34.615 0.33 0.00 0.00 2.57
95 96 7.655521 AGTAGTAATAGCCATGTACAGTCAA 57.344 36.000 0.33 0.00 0.00 3.18
96 97 7.123697 ACAAGTAGTAATAGCCATGTACAGTCA 59.876 37.037 0.33 0.00 0.00 3.41
97 98 7.490000 ACAAGTAGTAATAGCCATGTACAGTC 58.510 38.462 0.33 0.00 0.00 3.51
98 99 7.419711 ACAAGTAGTAATAGCCATGTACAGT 57.580 36.000 0.33 0.00 0.00 3.55
99 100 8.630917 ACTACAAGTAGTAATAGCCATGTACAG 58.369 37.037 10.97 0.00 43.98 2.74
100 101 8.529424 ACTACAAGTAGTAATAGCCATGTACA 57.471 34.615 10.97 0.00 43.98 2.90
101 102 9.245962 CAACTACAAGTAGTAATAGCCATGTAC 57.754 37.037 12.84 0.00 44.96 2.90
102 103 7.924412 GCAACTACAAGTAGTAATAGCCATGTA 59.076 37.037 12.84 0.00 44.96 2.29
103 104 6.761714 GCAACTACAAGTAGTAATAGCCATGT 59.238 38.462 12.84 0.00 44.96 3.21
104 105 6.202954 GGCAACTACAAGTAGTAATAGCCATG 59.797 42.308 24.90 15.15 44.96 3.66
105 106 6.289064 GGCAACTACAAGTAGTAATAGCCAT 58.711 40.000 24.90 6.30 44.96 4.40
106 107 5.667466 GGCAACTACAAGTAGTAATAGCCA 58.333 41.667 24.90 0.00 44.96 4.75
107 108 4.743644 CGGCAACTACAAGTAGTAATAGCC 59.256 45.833 22.48 22.48 44.96 3.93
108 109 4.208666 GCGGCAACTACAAGTAGTAATAGC 59.791 45.833 12.84 13.38 44.96 2.97
109 110 5.345702 TGCGGCAACTACAAGTAGTAATAG 58.654 41.667 12.84 7.21 44.96 1.73
110 111 5.327616 TGCGGCAACTACAAGTAGTAATA 57.672 39.130 12.84 0.00 44.96 0.98
111 112 4.196626 TGCGGCAACTACAAGTAGTAAT 57.803 40.909 12.84 0.00 44.96 1.89
112 113 3.663995 TGCGGCAACTACAAGTAGTAA 57.336 42.857 12.84 0.00 44.96 2.24
113 114 3.880047 ATGCGGCAACTACAAGTAGTA 57.120 42.857 6.82 0.00 44.96 1.82
115 116 3.435327 TGAAATGCGGCAACTACAAGTAG 59.565 43.478 6.82 5.72 39.04 2.57
116 117 3.187637 GTGAAATGCGGCAACTACAAGTA 59.812 43.478 6.82 0.00 0.00 2.24
117 118 2.031157 GTGAAATGCGGCAACTACAAGT 60.031 45.455 6.82 0.00 0.00 3.16
118 119 2.226437 AGTGAAATGCGGCAACTACAAG 59.774 45.455 6.82 0.00 0.00 3.16
119 120 2.226330 AGTGAAATGCGGCAACTACAA 58.774 42.857 6.82 0.00 0.00 2.41
120 121 1.890876 AGTGAAATGCGGCAACTACA 58.109 45.000 6.82 2.57 0.00 2.74
121 122 3.259064 TCTAGTGAAATGCGGCAACTAC 58.741 45.455 6.82 4.37 0.00 2.73
122 123 3.603158 TCTAGTGAAATGCGGCAACTA 57.397 42.857 6.82 9.36 0.00 2.24
123 124 2.472695 TCTAGTGAAATGCGGCAACT 57.527 45.000 6.82 8.60 0.00 3.16
124 125 3.764885 AATCTAGTGAAATGCGGCAAC 57.235 42.857 6.82 0.00 0.00 4.17
125 126 6.934083 TGATATAATCTAGTGAAATGCGGCAA 59.066 34.615 6.82 0.00 0.00 4.52
126 127 6.368791 GTGATATAATCTAGTGAAATGCGGCA 59.631 38.462 4.58 4.58 0.00 5.69
127 128 6.183360 GGTGATATAATCTAGTGAAATGCGGC 60.183 42.308 0.00 0.00 0.00 6.53
128 129 6.035005 CGGTGATATAATCTAGTGAAATGCGG 59.965 42.308 0.00 0.00 0.00 5.69
129 130 6.586463 ACGGTGATATAATCTAGTGAAATGCG 59.414 38.462 0.00 0.00 0.00 4.73
130 131 7.891183 ACGGTGATATAATCTAGTGAAATGC 57.109 36.000 0.00 0.00 0.00 3.56
131 132 9.476202 TCAACGGTGATATAATCTAGTGAAATG 57.524 33.333 0.00 0.00 0.00 2.32
132 133 9.698309 CTCAACGGTGATATAATCTAGTGAAAT 57.302 33.333 2.20 0.00 31.85 2.17
133 134 8.692710 ACTCAACGGTGATATAATCTAGTGAAA 58.307 33.333 2.20 0.00 31.85 2.69
134 135 8.234136 ACTCAACGGTGATATAATCTAGTGAA 57.766 34.615 2.20 0.00 31.85 3.18
135 136 7.818997 ACTCAACGGTGATATAATCTAGTGA 57.181 36.000 2.20 0.00 31.85 3.41
136 137 9.395707 GTTACTCAACGGTGATATAATCTAGTG 57.604 37.037 2.20 0.00 31.85 2.74
153 154 7.037438 TCCATTCATTACTACCGTTACTCAAC 58.963 38.462 0.00 0.00 0.00 3.18
154 155 7.172868 TCCATTCATTACTACCGTTACTCAA 57.827 36.000 0.00 0.00 0.00 3.02
155 156 6.778834 TCCATTCATTACTACCGTTACTCA 57.221 37.500 0.00 0.00 0.00 3.41
156 157 7.431249 TGATCCATTCATTACTACCGTTACTC 58.569 38.462 0.00 0.00 0.00 2.59
157 158 7.356089 TGATCCATTCATTACTACCGTTACT 57.644 36.000 0.00 0.00 0.00 2.24
158 159 7.117812 CCATGATCCATTCATTACTACCGTTAC 59.882 40.741 0.00 0.00 42.62 2.50
159 160 7.158697 CCATGATCCATTCATTACTACCGTTA 58.841 38.462 0.00 0.00 42.62 3.18
160 161 5.997746 CCATGATCCATTCATTACTACCGTT 59.002 40.000 0.00 0.00 42.62 4.44
161 162 5.513094 CCCATGATCCATTCATTACTACCGT 60.513 44.000 0.00 0.00 42.62 4.83
162 163 4.937620 CCCATGATCCATTCATTACTACCG 59.062 45.833 0.00 0.00 42.62 4.02
163 164 5.880901 ACCCATGATCCATTCATTACTACC 58.119 41.667 0.00 0.00 42.62 3.18
164 165 9.601217 GTATACCCATGATCCATTCATTACTAC 57.399 37.037 0.00 0.00 42.62 2.73
165 166 8.474831 CGTATACCCATGATCCATTCATTACTA 58.525 37.037 0.00 0.00 42.62 1.82
166 167 7.180229 TCGTATACCCATGATCCATTCATTACT 59.820 37.037 0.00 0.00 42.62 2.24
167 168 7.327975 TCGTATACCCATGATCCATTCATTAC 58.672 38.462 0.00 0.00 42.62 1.89
168 169 7.489239 TCGTATACCCATGATCCATTCATTA 57.511 36.000 0.00 0.00 42.62 1.90
169 170 6.373005 TCGTATACCCATGATCCATTCATT 57.627 37.500 0.00 0.00 42.62 2.57
170 171 6.566079 ATCGTATACCCATGATCCATTCAT 57.434 37.500 0.00 0.00 46.27 2.57
171 172 7.202001 GGATATCGTATACCCATGATCCATTCA 60.202 40.741 0.00 0.00 39.12 2.57
172 173 7.015682 AGGATATCGTATACCCATGATCCATTC 59.984 40.741 14.52 0.00 0.00 2.67
173 174 6.846505 AGGATATCGTATACCCATGATCCATT 59.153 38.462 14.52 0.00 0.00 3.16
174 175 6.385443 AGGATATCGTATACCCATGATCCAT 58.615 40.000 14.52 0.00 0.00 3.41
175 176 5.777449 AGGATATCGTATACCCATGATCCA 58.223 41.667 14.52 0.00 0.00 3.41
176 177 6.071840 GCTAGGATATCGTATACCCATGATCC 60.072 46.154 5.63 3.56 0.00 3.36
177 178 6.490381 TGCTAGGATATCGTATACCCATGATC 59.510 42.308 5.63 0.00 0.00 2.92
178 179 6.265649 GTGCTAGGATATCGTATACCCATGAT 59.734 42.308 5.63 0.00 0.00 2.45
179 180 5.593095 GTGCTAGGATATCGTATACCCATGA 59.407 44.000 5.63 0.00 0.00 3.07
180 181 5.359860 TGTGCTAGGATATCGTATACCCATG 59.640 44.000 5.63 0.00 0.00 3.66
181 182 5.360144 GTGTGCTAGGATATCGTATACCCAT 59.640 44.000 5.63 0.00 0.00 4.00
182 183 4.703575 GTGTGCTAGGATATCGTATACCCA 59.296 45.833 5.63 0.00 0.00 4.51
183 184 4.703575 TGTGTGCTAGGATATCGTATACCC 59.296 45.833 5.63 1.89 0.00 3.69
184 185 5.892160 TGTGTGCTAGGATATCGTATACC 57.108 43.478 5.63 4.52 0.00 2.73
185 186 6.807230 CCTTTGTGTGCTAGGATATCGTATAC 59.193 42.308 5.63 8.66 0.00 1.47
186 187 6.717997 TCCTTTGTGTGCTAGGATATCGTATA 59.282 38.462 5.63 0.00 33.23 1.47
187 188 5.538813 TCCTTTGTGTGCTAGGATATCGTAT 59.461 40.000 5.63 0.00 33.23 3.06
188 189 4.891168 TCCTTTGTGTGCTAGGATATCGTA 59.109 41.667 5.11 5.11 33.23 3.43
189 190 3.704566 TCCTTTGTGTGCTAGGATATCGT 59.295 43.478 3.05 3.05 33.23 3.73
190 191 4.322080 TCCTTTGTGTGCTAGGATATCG 57.678 45.455 0.00 0.00 33.23 2.92
191 192 6.058183 ACAATCCTTTGTGTGCTAGGATATC 58.942 40.000 0.00 0.00 45.69 1.63
192 193 6.006275 ACAATCCTTTGTGTGCTAGGATAT 57.994 37.500 0.00 0.00 45.69 1.63
193 194 5.435686 ACAATCCTTTGTGTGCTAGGATA 57.564 39.130 0.00 0.00 45.69 2.59
195 196 3.788227 ACAATCCTTTGTGTGCTAGGA 57.212 42.857 0.00 0.00 44.36 2.94
196 197 3.941483 CCTACAATCCTTTGTGTGCTAGG 59.059 47.826 1.76 0.00 45.56 3.02
197 198 4.832248 TCCTACAATCCTTTGTGTGCTAG 58.168 43.478 1.76 0.00 45.56 3.42
198 199 4.901197 TCCTACAATCCTTTGTGTGCTA 57.099 40.909 1.76 0.00 45.56 3.49
199 200 3.788227 TCCTACAATCCTTTGTGTGCT 57.212 42.857 1.76 0.00 45.56 4.40
200 201 4.009675 TCATCCTACAATCCTTTGTGTGC 58.990 43.478 1.76 0.00 45.56 4.57
201 202 5.122869 CAGTCATCCTACAATCCTTTGTGTG 59.877 44.000 1.76 0.00 45.56 3.82
202 203 5.013079 TCAGTCATCCTACAATCCTTTGTGT 59.987 40.000 1.76 0.00 45.56 3.72
203 204 5.352569 GTCAGTCATCCTACAATCCTTTGTG 59.647 44.000 1.76 0.00 45.56 3.33
205 206 5.738909 AGTCAGTCATCCTACAATCCTTTG 58.261 41.667 0.00 0.00 38.86 2.77
206 207 6.670027 AGTAGTCAGTCATCCTACAATCCTTT 59.330 38.462 0.00 0.00 34.78 3.11
207 208 6.198639 AGTAGTCAGTCATCCTACAATCCTT 58.801 40.000 0.00 0.00 34.78 3.36
208 209 5.772004 AGTAGTCAGTCATCCTACAATCCT 58.228 41.667 0.00 0.00 34.78 3.24
209 210 5.010213 GGAGTAGTCAGTCATCCTACAATCC 59.990 48.000 0.00 0.00 34.78 3.01
210 211 5.830991 AGGAGTAGTCAGTCATCCTACAATC 59.169 44.000 0.00 0.00 38.62 2.67
211 212 5.772004 AGGAGTAGTCAGTCATCCTACAAT 58.228 41.667 0.00 0.00 38.62 2.71
212 213 5.194473 AGGAGTAGTCAGTCATCCTACAA 57.806 43.478 0.00 0.00 38.62 2.41
213 214 4.864483 AGGAGTAGTCAGTCATCCTACA 57.136 45.455 0.00 0.00 38.62 2.74
214 215 6.775708 AGATAGGAGTAGTCAGTCATCCTAC 58.224 44.000 1.53 0.00 43.53 3.18
215 216 6.295405 CGAGATAGGAGTAGTCAGTCATCCTA 60.295 46.154 0.00 1.98 44.52 2.94
216 217 5.512404 CGAGATAGGAGTAGTCAGTCATCCT 60.512 48.000 0.00 0.00 42.89 3.24
217 218 4.693566 CGAGATAGGAGTAGTCAGTCATCC 59.306 50.000 0.00 0.00 0.00 3.51
218 219 4.693566 CCGAGATAGGAGTAGTCAGTCATC 59.306 50.000 0.00 0.00 0.00 2.92
219 220 4.103469 ACCGAGATAGGAGTAGTCAGTCAT 59.897 45.833 0.00 0.00 34.73 3.06
220 221 3.455177 ACCGAGATAGGAGTAGTCAGTCA 59.545 47.826 0.00 0.00 34.73 3.41
221 222 3.810941 CACCGAGATAGGAGTAGTCAGTC 59.189 52.174 0.00 0.00 34.73 3.51
222 223 3.455177 TCACCGAGATAGGAGTAGTCAGT 59.545 47.826 0.00 0.00 34.73 3.41
223 224 3.810941 GTCACCGAGATAGGAGTAGTCAG 59.189 52.174 0.00 0.00 34.73 3.51
224 225 3.740452 CGTCACCGAGATAGGAGTAGTCA 60.740 52.174 0.00 0.00 35.63 3.41
225 226 2.801679 CGTCACCGAGATAGGAGTAGTC 59.198 54.545 0.00 0.00 35.63 2.59
226 227 2.433604 TCGTCACCGAGATAGGAGTAGT 59.566 50.000 0.00 0.00 38.40 2.73
227 228 2.801679 GTCGTCACCGAGATAGGAGTAG 59.198 54.545 0.00 0.00 45.26 2.57
228 229 2.484417 GGTCGTCACCGAGATAGGAGTA 60.484 54.545 0.00 0.00 45.26 2.59
229 230 1.666054 GTCGTCACCGAGATAGGAGT 58.334 55.000 0.00 0.00 45.26 3.85
230 231 0.945813 GGTCGTCACCGAGATAGGAG 59.054 60.000 0.00 0.00 45.26 3.69
231 232 3.091318 GGTCGTCACCGAGATAGGA 57.909 57.895 0.00 0.00 45.26 2.94
240 241 0.248539 GATAGCAGTCGGTCGTCACC 60.249 60.000 0.00 0.00 39.69 4.02
241 242 0.248539 GGATAGCAGTCGGTCGTCAC 60.249 60.000 0.00 0.00 0.00 3.67
242 243 0.678684 TGGATAGCAGTCGGTCGTCA 60.679 55.000 0.00 0.00 0.00 4.35
243 244 0.669077 ATGGATAGCAGTCGGTCGTC 59.331 55.000 0.00 0.00 0.00 4.20
244 245 0.669077 GATGGATAGCAGTCGGTCGT 59.331 55.000 0.00 0.00 0.00 4.34
245 246 0.668535 TGATGGATAGCAGTCGGTCG 59.331 55.000 0.00 0.00 0.00 4.79
246 247 1.409064 TGTGATGGATAGCAGTCGGTC 59.591 52.381 0.00 0.00 0.00 4.79
247 248 1.410517 CTGTGATGGATAGCAGTCGGT 59.589 52.381 0.00 0.00 0.00 4.69
248 249 1.269988 CCTGTGATGGATAGCAGTCGG 60.270 57.143 0.00 0.00 0.00 4.79
249 250 1.410517 ACCTGTGATGGATAGCAGTCG 59.589 52.381 0.00 0.00 0.00 4.18
250 251 2.169352 ACACCTGTGATGGATAGCAGTC 59.831 50.000 3.94 0.00 0.00 3.51
251 252 2.191400 ACACCTGTGATGGATAGCAGT 58.809 47.619 3.94 0.00 0.00 4.40
252 253 2.996249 ACACCTGTGATGGATAGCAG 57.004 50.000 3.94 0.00 0.00 4.24
263 264 2.163010 GCATTTGGATCTCACACCTGTG 59.837 50.000 0.00 0.00 46.91 3.66
264 265 2.224843 TGCATTTGGATCTCACACCTGT 60.225 45.455 0.00 0.00 0.00 4.00
265 266 2.163010 GTGCATTTGGATCTCACACCTG 59.837 50.000 0.00 0.00 0.00 4.00
266 267 2.440409 GTGCATTTGGATCTCACACCT 58.560 47.619 0.00 0.00 0.00 4.00
267 268 1.131126 CGTGCATTTGGATCTCACACC 59.869 52.381 0.00 0.00 0.00 4.16
268 269 1.466360 GCGTGCATTTGGATCTCACAC 60.466 52.381 0.00 0.00 0.00 3.82
269 270 0.804364 GCGTGCATTTGGATCTCACA 59.196 50.000 0.00 0.00 0.00 3.58
270 271 0.804364 TGCGTGCATTTGGATCTCAC 59.196 50.000 0.00 0.00 0.00 3.51
271 272 0.804364 GTGCGTGCATTTGGATCTCA 59.196 50.000 0.00 0.00 0.00 3.27
272 273 1.089920 AGTGCGTGCATTTGGATCTC 58.910 50.000 0.00 0.00 0.00 2.75
273 274 1.200716 CAAGTGCGTGCATTTGGATCT 59.799 47.619 18.87 0.00 39.13 2.75
274 275 1.199789 TCAAGTGCGTGCATTTGGATC 59.800 47.619 23.94 0.00 41.81 3.36
275 276 1.068333 GTCAAGTGCGTGCATTTGGAT 60.068 47.619 23.94 0.00 41.81 3.41
276 277 0.310543 GTCAAGTGCGTGCATTTGGA 59.689 50.000 23.94 12.05 41.81 3.53
277 278 0.311790 AGTCAAGTGCGTGCATTTGG 59.688 50.000 23.94 10.33 41.81 3.28
278 279 1.678360 GAGTCAAGTGCGTGCATTTG 58.322 50.000 20.12 20.12 42.52 2.32
279 280 0.235665 CGAGTCAAGTGCGTGCATTT 59.764 50.000 0.00 0.00 0.00 2.32
280 281 0.880278 ACGAGTCAAGTGCGTGCATT 60.880 50.000 0.00 0.00 36.83 3.56
281 282 0.880278 AACGAGTCAAGTGCGTGCAT 60.880 50.000 0.00 0.00 38.39 3.96
282 283 1.520564 AACGAGTCAAGTGCGTGCA 60.521 52.632 0.00 0.00 38.39 4.57
283 284 1.083401 CAACGAGTCAAGTGCGTGC 60.083 57.895 0.00 0.00 38.39 5.34
284 285 1.151777 ACCAACGAGTCAAGTGCGTG 61.152 55.000 0.00 0.00 38.39 5.34
285 286 1.143183 ACCAACGAGTCAAGTGCGT 59.857 52.632 0.00 0.00 40.35 5.24
286 287 0.874175 TCACCAACGAGTCAAGTGCG 60.874 55.000 0.00 0.00 0.00 5.34
287 288 0.861837 CTCACCAACGAGTCAAGTGC 59.138 55.000 0.00 0.00 0.00 4.40
288 289 2.225068 ACTCACCAACGAGTCAAGTG 57.775 50.000 0.00 0.00 42.70 3.16
289 290 3.056749 GGATACTCACCAACGAGTCAAGT 60.057 47.826 0.00 0.00 42.70 3.16
290 291 3.512680 GGATACTCACCAACGAGTCAAG 58.487 50.000 0.00 0.00 42.70 3.02
291 292 2.232941 GGGATACTCACCAACGAGTCAA 59.767 50.000 0.00 0.00 42.70 3.18
292 293 1.822990 GGGATACTCACCAACGAGTCA 59.177 52.381 0.00 0.00 42.70 3.41
293 294 1.136500 GGGGATACTCACCAACGAGTC 59.864 57.143 0.00 0.00 42.70 3.36
294 295 2.239460 GGGGGATACTCACCAACGAGT 61.239 57.143 0.00 0.00 43.41 4.18
295 296 0.464452 GGGGGATACTCACCAACGAG 59.536 60.000 0.00 0.00 43.41 4.18
296 297 0.042131 AGGGGGATACTCACCAACGA 59.958 55.000 0.00 0.00 43.41 3.85
297 298 0.178068 CAGGGGGATACTCACCAACG 59.822 60.000 0.00 0.00 43.41 4.10
298 299 1.580059 TCAGGGGGATACTCACCAAC 58.420 55.000 0.00 0.00 43.41 3.77
299 300 2.587060 ATCAGGGGGATACTCACCAA 57.413 50.000 0.00 0.00 43.41 3.67
300 301 3.406152 AGATATCAGGGGGATACTCACCA 59.594 47.826 5.32 0.00 43.41 4.17
301 302 3.772025 CAGATATCAGGGGGATACTCACC 59.228 52.174 5.32 0.00 41.17 4.02
302 303 4.464597 GTCAGATATCAGGGGGATACTCAC 59.535 50.000 5.32 0.00 41.17 3.51
303 304 4.678256 GTCAGATATCAGGGGGATACTCA 58.322 47.826 5.32 0.00 41.17 3.41
304 305 3.697045 CGTCAGATATCAGGGGGATACTC 59.303 52.174 5.32 0.00 41.17 2.59
305 306 3.702792 CGTCAGATATCAGGGGGATACT 58.297 50.000 5.32 0.00 41.17 2.12
306 307 2.166664 GCGTCAGATATCAGGGGGATAC 59.833 54.545 5.32 0.00 41.17 2.24
307 308 2.043115 AGCGTCAGATATCAGGGGGATA 59.957 50.000 5.32 0.00 42.50 2.59
308 309 1.203237 AGCGTCAGATATCAGGGGGAT 60.203 52.381 5.32 0.00 40.14 3.85
309 310 0.188587 AGCGTCAGATATCAGGGGGA 59.811 55.000 5.32 0.00 0.00 4.81
310 311 1.051812 AAGCGTCAGATATCAGGGGG 58.948 55.000 5.32 0.00 0.00 5.40
311 312 2.487934 CAAAGCGTCAGATATCAGGGG 58.512 52.381 5.32 0.00 0.00 4.79
312 313 2.487934 CCAAAGCGTCAGATATCAGGG 58.512 52.381 5.32 0.00 0.00 4.45
313 314 2.158900 ACCCAAAGCGTCAGATATCAGG 60.159 50.000 5.32 0.00 0.00 3.86
314 315 3.185246 ACCCAAAGCGTCAGATATCAG 57.815 47.619 5.32 0.00 0.00 2.90
315 316 3.055458 TCAACCCAAAGCGTCAGATATCA 60.055 43.478 5.32 0.00 0.00 2.15
316 317 3.531538 TCAACCCAAAGCGTCAGATATC 58.468 45.455 0.00 0.00 0.00 1.63
317 318 3.627395 TCAACCCAAAGCGTCAGATAT 57.373 42.857 0.00 0.00 0.00 1.63
318 319 3.244422 ACTTCAACCCAAAGCGTCAGATA 60.244 43.478 0.00 0.00 0.00 1.98
319 320 2.154462 CTTCAACCCAAAGCGTCAGAT 58.846 47.619 0.00 0.00 0.00 2.90
320 321 1.134220 ACTTCAACCCAAAGCGTCAGA 60.134 47.619 0.00 0.00 0.00 3.27
321 322 1.308998 ACTTCAACCCAAAGCGTCAG 58.691 50.000 0.00 0.00 0.00 3.51
322 323 1.757682 AACTTCAACCCAAAGCGTCA 58.242 45.000 0.00 0.00 0.00 4.35
323 324 2.098443 TGAAACTTCAACCCAAAGCGTC 59.902 45.455 0.00 0.00 33.55 5.19
324 325 2.096248 TGAAACTTCAACCCAAAGCGT 58.904 42.857 0.00 0.00 33.55 5.07
325 326 2.861462 TGAAACTTCAACCCAAAGCG 57.139 45.000 0.00 0.00 33.55 4.68
334 335 3.340034 ACACGTCAGGTTGAAACTTCAA 58.660 40.909 0.69 0.69 44.31 2.69
335 336 2.980568 ACACGTCAGGTTGAAACTTCA 58.019 42.857 0.00 0.00 34.92 3.02
336 337 3.126343 ACAACACGTCAGGTTGAAACTTC 59.874 43.478 20.31 0.00 46.56 3.01
337 338 3.078837 ACAACACGTCAGGTTGAAACTT 58.921 40.909 20.31 0.00 46.56 2.66
338 339 2.676342 GACAACACGTCAGGTTGAAACT 59.324 45.455 20.31 1.93 46.56 2.66
339 340 3.047613 GACAACACGTCAGGTTGAAAC 57.952 47.619 20.31 9.75 46.56 2.78
349 350 2.258726 GGGCAAGGGACAACACGTC 61.259 63.158 0.00 0.00 44.57 4.34
350 351 2.203294 GGGCAAGGGACAACACGT 60.203 61.111 0.00 0.00 0.00 4.49
351 352 2.983592 GGGGCAAGGGACAACACG 60.984 66.667 0.00 0.00 0.00 4.49
352 353 0.831711 AATGGGGCAAGGGACAACAC 60.832 55.000 0.00 0.00 0.00 3.32
353 354 0.831288 CAATGGGGCAAGGGACAACA 60.831 55.000 0.00 0.00 0.00 3.33
354 355 0.541764 TCAATGGGGCAAGGGACAAC 60.542 55.000 0.00 0.00 0.00 3.32
355 356 0.541764 GTCAATGGGGCAAGGGACAA 60.542 55.000 0.00 0.00 0.00 3.18
356 357 1.076549 GTCAATGGGGCAAGGGACA 59.923 57.895 0.00 0.00 0.00 4.02
357 358 0.251787 AAGTCAATGGGGCAAGGGAC 60.252 55.000 0.00 0.00 0.00 4.46
358 359 0.039618 GAAGTCAATGGGGCAAGGGA 59.960 55.000 0.00 0.00 0.00 4.20
359 360 0.040204 AGAAGTCAATGGGGCAAGGG 59.960 55.000 0.00 0.00 0.00 3.95
360 361 1.180029 CAGAAGTCAATGGGGCAAGG 58.820 55.000 0.00 0.00 0.00 3.61
361 362 1.180029 CCAGAAGTCAATGGGGCAAG 58.820 55.000 0.00 0.00 32.63 4.01
362 363 0.776810 TCCAGAAGTCAATGGGGCAA 59.223 50.000 0.00 0.00 37.19 4.52
363 364 0.038166 GTCCAGAAGTCAATGGGGCA 59.962 55.000 0.00 0.00 37.19 5.36
364 365 0.681243 GGTCCAGAAGTCAATGGGGC 60.681 60.000 0.00 0.00 37.19 5.80
365 366 0.392998 CGGTCCAGAAGTCAATGGGG 60.393 60.000 0.00 0.00 37.19 4.96
366 367 1.026718 GCGGTCCAGAAGTCAATGGG 61.027 60.000 0.00 0.00 37.19 4.00
367 368 0.321564 TGCGGTCCAGAAGTCAATGG 60.322 55.000 0.00 0.00 37.97 3.16
368 369 0.798776 GTGCGGTCCAGAAGTCAATG 59.201 55.000 0.00 0.00 0.00 2.82
369 370 0.687354 AGTGCGGTCCAGAAGTCAAT 59.313 50.000 0.00 0.00 0.00 2.57
370 371 0.468226 AAGTGCGGTCCAGAAGTCAA 59.532 50.000 0.00 0.00 0.00 3.18
371 372 0.468226 AAAGTGCGGTCCAGAAGTCA 59.532 50.000 0.00 0.00 0.00 3.41
372 373 1.264288 CAAAAGTGCGGTCCAGAAGTC 59.736 52.381 0.00 0.00 0.00 3.01
373 374 1.134220 TCAAAAGTGCGGTCCAGAAGT 60.134 47.619 0.00 0.00 0.00 3.01
374 375 1.532868 CTCAAAAGTGCGGTCCAGAAG 59.467 52.381 0.00 0.00 0.00 2.85
375 376 1.134220 ACTCAAAAGTGCGGTCCAGAA 60.134 47.619 0.00 0.00 33.32 3.02
376 377 0.468226 ACTCAAAAGTGCGGTCCAGA 59.532 50.000 0.00 0.00 33.32 3.86
377 378 0.588252 CACTCAAAAGTGCGGTCCAG 59.412 55.000 0.00 0.00 46.01 3.86
378 379 2.701587 CACTCAAAAGTGCGGTCCA 58.298 52.632 0.00 0.00 46.01 4.02
386 387 4.181051 GCCCAGCCACTCAAAAGT 57.819 55.556 0.00 0.00 35.60 2.66
397 398 3.010413 GCACATCCAAAGGCCCAGC 62.010 63.158 0.00 0.00 0.00 4.85
398 399 2.353610 GGCACATCCAAAGGCCCAG 61.354 63.158 0.00 0.00 40.55 4.45
399 400 2.283821 GGCACATCCAAAGGCCCA 60.284 61.111 0.00 0.00 40.55 5.36
400 401 2.283821 TGGCACATCCAAAGGCCC 60.284 61.111 0.00 0.00 45.83 5.80
415 416 4.772886 GGTTATACCTAGGGCCATATGG 57.227 50.000 18.07 18.07 34.73 2.74
425 426 9.037058 TTCATGGGTTGACGAGGTTATACCTAG 62.037 44.444 0.00 1.33 45.15 3.02
426 427 7.315223 TTCATGGGTTGACGAGGTTATACCTA 61.315 42.308 0.00 0.00 40.94 3.08
427 428 6.574023 TTCATGGGTTGACGAGGTTATACCT 61.574 44.000 0.00 0.00 42.64 3.08
428 429 3.133362 TCATGGGTTGACGAGGTTATACC 59.867 47.826 0.00 0.00 38.99 2.73
429 430 4.395959 TCATGGGTTGACGAGGTTATAC 57.604 45.455 0.00 0.00 0.00 1.47
430 431 4.223255 TGTTCATGGGTTGACGAGGTTATA 59.777 41.667 0.00 0.00 32.84 0.98
431 432 3.008594 TGTTCATGGGTTGACGAGGTTAT 59.991 43.478 0.00 0.00 32.84 1.89
432 433 2.369203 TGTTCATGGGTTGACGAGGTTA 59.631 45.455 0.00 0.00 32.84 2.85
433 434 1.142060 TGTTCATGGGTTGACGAGGTT 59.858 47.619 0.00 0.00 32.84 3.50
434 435 0.762418 TGTTCATGGGTTGACGAGGT 59.238 50.000 0.00 0.00 32.84 3.85
435 436 2.113860 ATGTTCATGGGTTGACGAGG 57.886 50.000 0.00 0.00 32.84 4.63
436 437 5.818136 ATAAATGTTCATGGGTTGACGAG 57.182 39.130 0.00 0.00 32.84 4.18
437 438 5.943416 AGAATAAATGTTCATGGGTTGACGA 59.057 36.000 0.00 0.00 32.84 4.20
438 439 6.194796 AGAATAAATGTTCATGGGTTGACG 57.805 37.500 0.00 0.00 32.84 4.35
439 440 8.519526 TGTTAGAATAAATGTTCATGGGTTGAC 58.480 33.333 0.00 0.00 32.84 3.18
440 441 8.519526 GTGTTAGAATAAATGTTCATGGGTTGA 58.480 33.333 0.00 0.00 0.00 3.18
441 442 8.303156 TGTGTTAGAATAAATGTTCATGGGTTG 58.697 33.333 0.00 0.00 0.00 3.77
442 443 8.303876 GTGTGTTAGAATAAATGTTCATGGGTT 58.696 33.333 0.00 0.00 0.00 4.11
443 444 7.450014 TGTGTGTTAGAATAAATGTTCATGGGT 59.550 33.333 0.00 0.00 0.00 4.51
444 445 7.825681 TGTGTGTTAGAATAAATGTTCATGGG 58.174 34.615 0.00 0.00 0.00 4.00
445 446 9.292846 CATGTGTGTTAGAATAAATGTTCATGG 57.707 33.333 0.00 0.00 0.00 3.66
448 449 9.891828 GTTCATGTGTGTTAGAATAAATGTTCA 57.108 29.630 0.00 0.00 0.00 3.18
449 450 9.891828 TGTTCATGTGTGTTAGAATAAATGTTC 57.108 29.630 0.00 0.00 0.00 3.18
451 452 9.677567 GTTGTTCATGTGTGTTAGAATAAATGT 57.322 29.630 0.00 0.00 0.00 2.71
452 453 9.676195 TGTTGTTCATGTGTGTTAGAATAAATG 57.324 29.630 0.00 0.00 0.00 2.32
456 457 9.891828 GAATTGTTGTTCATGTGTGTTAGAATA 57.108 29.630 0.00 0.00 0.00 1.75
457 458 8.632679 AGAATTGTTGTTCATGTGTGTTAGAAT 58.367 29.630 0.00 0.00 0.00 2.40
458 459 7.995289 AGAATTGTTGTTCATGTGTGTTAGAA 58.005 30.769 0.00 0.00 0.00 2.10
459 460 7.566760 AGAATTGTTGTTCATGTGTGTTAGA 57.433 32.000 0.00 0.00 0.00 2.10
460 461 9.729023 TTTAGAATTGTTGTTCATGTGTGTTAG 57.271 29.630 0.00 0.00 0.00 2.34
462 463 8.994429 TTTTAGAATTGTTGTTCATGTGTGTT 57.006 26.923 0.00 0.00 0.00 3.32
463 464 8.994429 TTTTTAGAATTGTTGTTCATGTGTGT 57.006 26.923 0.00 0.00 0.00 3.72
528 529 8.613482 TGTCGTATTTGAAAATTGTTCACTACA 58.387 29.630 8.28 0.00 34.12 2.74
529 530 8.889000 GTGTCGTATTTGAAAATTGTTCACTAC 58.111 33.333 0.00 0.00 0.00 2.73
530 531 7.794810 CGTGTCGTATTTGAAAATTGTTCACTA 59.205 33.333 0.00 0.00 0.00 2.74
531 532 6.631238 CGTGTCGTATTTGAAAATTGTTCACT 59.369 34.615 0.00 0.00 0.00 3.41
532 533 6.629649 TCGTGTCGTATTTGAAAATTGTTCAC 59.370 34.615 0.00 0.00 0.00 3.18
533 534 6.716438 TCGTGTCGTATTTGAAAATTGTTCA 58.284 32.000 0.00 0.00 0.00 3.18
534 535 7.356962 GGTTCGTGTCGTATTTGAAAATTGTTC 60.357 37.037 0.00 0.00 0.00 3.18
535 536 6.415573 GGTTCGTGTCGTATTTGAAAATTGTT 59.584 34.615 0.00 0.00 0.00 2.83
536 537 5.910723 GGTTCGTGTCGTATTTGAAAATTGT 59.089 36.000 0.00 0.00 0.00 2.71
537 538 5.910166 TGGTTCGTGTCGTATTTGAAAATTG 59.090 36.000 0.00 0.00 0.00 2.32
538 539 6.062434 TGGTTCGTGTCGTATTTGAAAATT 57.938 33.333 0.00 0.00 0.00 1.82
539 540 5.676532 TGGTTCGTGTCGTATTTGAAAAT 57.323 34.783 0.00 0.00 0.00 1.82
540 541 5.676532 ATGGTTCGTGTCGTATTTGAAAA 57.323 34.783 0.00 0.00 0.00 2.29
541 542 5.676532 AATGGTTCGTGTCGTATTTGAAA 57.323 34.783 0.00 0.00 0.00 2.69
542 543 5.676532 AAATGGTTCGTGTCGTATTTGAA 57.323 34.783 0.00 0.00 0.00 2.69
543 544 5.676532 AAAATGGTTCGTGTCGTATTTGA 57.323 34.783 0.00 0.00 0.00 2.69
571 572 7.750458 CGTGCATCTAAAACTAATTGTTCATGT 59.250 33.333 0.00 0.00 38.03 3.21
572 573 7.962373 TCGTGCATCTAAAACTAATTGTTCATG 59.038 33.333 0.00 0.00 38.03 3.07
573 574 8.039603 TCGTGCATCTAAAACTAATTGTTCAT 57.960 30.769 0.00 0.00 38.03 2.57
574 575 7.428282 TCGTGCATCTAAAACTAATTGTTCA 57.572 32.000 0.00 0.00 38.03 3.18
575 576 7.801315 TGTTCGTGCATCTAAAACTAATTGTTC 59.199 33.333 0.00 0.00 38.03 3.18
576 577 7.644490 TGTTCGTGCATCTAAAACTAATTGTT 58.356 30.769 0.00 0.00 41.29 2.83
577 578 7.197071 TGTTCGTGCATCTAAAACTAATTGT 57.803 32.000 0.00 0.00 0.00 2.71
578 579 8.673626 AATGTTCGTGCATCTAAAACTAATTG 57.326 30.769 0.00 0.00 0.00 2.32
579 580 9.691362 AAAATGTTCGTGCATCTAAAACTAATT 57.309 25.926 0.00 0.00 0.00 1.40
580 581 9.691362 AAAAATGTTCGTGCATCTAAAACTAAT 57.309 25.926 0.00 0.00 0.00 1.73
583 584 9.691362 AATAAAAATGTTCGTGCATCTAAAACT 57.309 25.926 0.00 0.00 0.00 2.66
588 589 9.684448 TCAAAAATAAAAATGTTCGTGCATCTA 57.316 25.926 0.00 0.00 0.00 1.98
589 590 8.586570 TCAAAAATAAAAATGTTCGTGCATCT 57.413 26.923 0.00 0.00 0.00 2.90
657 658 9.404848 GGGCTTACTAGTGTCCTTTAATAATTT 57.595 33.333 5.39 0.00 0.00 1.82
658 659 8.554011 TGGGCTTACTAGTGTCCTTTAATAATT 58.446 33.333 5.39 0.00 0.00 1.40
659 660 8.097791 TGGGCTTACTAGTGTCCTTTAATAAT 57.902 34.615 5.39 0.00 0.00 1.28
660 661 7.499200 TGGGCTTACTAGTGTCCTTTAATAA 57.501 36.000 5.39 0.00 0.00 1.40
661 662 7.685849 ATGGGCTTACTAGTGTCCTTTAATA 57.314 36.000 5.39 0.00 0.00 0.98
662 663 6.576778 ATGGGCTTACTAGTGTCCTTTAAT 57.423 37.500 5.39 0.00 0.00 1.40
663 664 6.382919 AATGGGCTTACTAGTGTCCTTTAA 57.617 37.500 5.39 0.00 0.00 1.52
664 665 6.214819 AGAAATGGGCTTACTAGTGTCCTTTA 59.785 38.462 5.39 0.00 0.00 1.85
665 666 4.929146 AATGGGCTTACTAGTGTCCTTT 57.071 40.909 5.39 2.46 0.00 3.11
666 667 4.536489 AGAAATGGGCTTACTAGTGTCCTT 59.464 41.667 5.39 0.00 0.00 3.36
667 668 4.104831 AGAAATGGGCTTACTAGTGTCCT 58.895 43.478 5.39 0.00 0.00 3.85
668 669 4.489306 AGAAATGGGCTTACTAGTGTCC 57.511 45.455 5.39 0.61 0.00 4.02
669 670 7.916914 TTTTAGAAATGGGCTTACTAGTGTC 57.083 36.000 5.39 0.00 0.00 3.67
670 671 9.969001 TTATTTTAGAAATGGGCTTACTAGTGT 57.031 29.630 5.39 0.00 0.00 3.55
717 718 9.161629 GGCCTATTAGCAATTTTTGTAAACAAT 57.838 29.630 0.00 0.00 35.55 2.71
718 719 7.329717 CGGCCTATTAGCAATTTTTGTAAACAA 59.670 33.333 0.00 0.00 0.00 2.83
719 720 6.809196 CGGCCTATTAGCAATTTTTGTAAACA 59.191 34.615 0.00 0.00 0.00 2.83
720 721 6.237728 GCGGCCTATTAGCAATTTTTGTAAAC 60.238 38.462 0.00 0.00 0.00 2.01
721 722 5.808030 GCGGCCTATTAGCAATTTTTGTAAA 59.192 36.000 0.00 0.00 0.00 2.01
722 723 5.105716 TGCGGCCTATTAGCAATTTTTGTAA 60.106 36.000 0.00 0.00 38.01 2.41
723 724 4.399618 TGCGGCCTATTAGCAATTTTTGTA 59.600 37.500 0.00 0.00 38.01 2.41
724 725 3.194542 TGCGGCCTATTAGCAATTTTTGT 59.805 39.130 0.00 0.00 38.01 2.83
725 726 3.551485 GTGCGGCCTATTAGCAATTTTTG 59.449 43.478 3.66 0.00 42.93 2.44
726 727 3.194542 TGTGCGGCCTATTAGCAATTTTT 59.805 39.130 3.66 0.00 42.93 1.94
727 728 2.757868 TGTGCGGCCTATTAGCAATTTT 59.242 40.909 3.66 0.00 42.93 1.82
728 729 2.358898 CTGTGCGGCCTATTAGCAATTT 59.641 45.455 3.66 0.00 42.93 1.82
729 730 1.949525 CTGTGCGGCCTATTAGCAATT 59.050 47.619 3.66 0.00 42.93 2.32
730 731 1.134098 ACTGTGCGGCCTATTAGCAAT 60.134 47.619 3.66 0.00 42.93 3.56
731 732 0.251916 ACTGTGCGGCCTATTAGCAA 59.748 50.000 3.66 0.00 42.93 3.91
732 733 1.068588 CTACTGTGCGGCCTATTAGCA 59.931 52.381 0.00 0.00 38.71 3.49
733 734 1.605712 CCTACTGTGCGGCCTATTAGC 60.606 57.143 0.00 0.00 0.00 3.09
734 735 1.605712 GCCTACTGTGCGGCCTATTAG 60.606 57.143 0.00 0.00 40.43 1.73
735 736 0.391597 GCCTACTGTGCGGCCTATTA 59.608 55.000 0.00 0.00 40.43 0.98
736 737 1.146263 GCCTACTGTGCGGCCTATT 59.854 57.895 0.00 0.00 40.43 1.73
737 738 2.032860 CTGCCTACTGTGCGGCCTAT 62.033 60.000 16.84 0.00 45.71 2.57
738 739 2.682136 TGCCTACTGTGCGGCCTA 60.682 61.111 16.84 1.07 45.71 3.93
739 740 4.087892 CTGCCTACTGTGCGGCCT 62.088 66.667 16.84 0.00 45.71 5.19
743 744 3.687321 ATGGGCTGCCTACTGTGCG 62.687 63.158 19.68 0.00 0.00 5.34
744 745 0.107214 TAATGGGCTGCCTACTGTGC 60.107 55.000 19.68 0.00 0.00 4.57
745 746 2.418368 TTAATGGGCTGCCTACTGTG 57.582 50.000 19.68 0.00 0.00 3.66
746 747 2.242196 ACATTAATGGGCTGCCTACTGT 59.758 45.455 19.68 10.66 0.00 3.55
747 748 2.936202 ACATTAATGGGCTGCCTACTG 58.064 47.619 19.68 10.03 0.00 2.74
748 749 3.669939 AACATTAATGGGCTGCCTACT 57.330 42.857 19.68 4.60 0.00 2.57
749 750 4.736126 AAAACATTAATGGGCTGCCTAC 57.264 40.909 19.68 2.99 0.00 3.18
768 769 1.373590 GGGAGCTCGCGGCATAAAAA 61.374 55.000 15.66 0.00 44.79 1.94
769 770 1.817941 GGGAGCTCGCGGCATAAAA 60.818 57.895 15.66 0.00 44.79 1.52
770 771 2.203015 GGGAGCTCGCGGCATAAA 60.203 61.111 15.66 0.00 44.79 1.40
771 772 4.235762 GGGGAGCTCGCGGCATAA 62.236 66.667 22.90 0.00 44.79 1.90
778 779 4.500116 GTGAGACGGGGAGCTCGC 62.500 72.222 21.89 21.89 34.90 5.03
779 780 3.827898 GGTGAGACGGGGAGCTCG 61.828 72.222 7.83 0.00 33.89 5.03
780 781 3.827898 CGGTGAGACGGGGAGCTC 61.828 72.222 4.71 4.71 0.00 4.09
788 789 1.566018 GGCAGAAAACCGGTGAGACG 61.566 60.000 8.52 0.00 0.00 4.18
789 790 0.250338 AGGCAGAAAACCGGTGAGAC 60.250 55.000 8.52 0.00 0.00 3.36
790 791 0.034896 GAGGCAGAAAACCGGTGAGA 59.965 55.000 8.52 0.00 0.00 3.27
805 806 0.463654 TGTCCGCAATACATGGAGGC 60.464 55.000 0.00 0.00 31.04 4.70
846 847 0.320771 TTTTCTCTGGCTGACTCGGC 60.321 55.000 0.64 0.64 34.56 5.54
881 882 1.274703 TTGAGTGGAGGGGATCTGGC 61.275 60.000 0.00 0.00 0.00 4.85
969 971 3.049344 GGGTTTAGGAGGAGTGGATGAT 58.951 50.000 0.00 0.00 0.00 2.45
1022 1027 3.151022 GGAGCAGGAGGAGGACGG 61.151 72.222 0.00 0.00 0.00 4.79
1024 1029 1.760480 GGAGGAGCAGGAGGAGGAC 60.760 68.421 0.00 0.00 0.00 3.85
1723 1953 2.042230 GGGGGAGTAGGAGCCGAA 60.042 66.667 0.00 0.00 0.00 4.30
1848 2078 1.195115 AATGCAGGGAAGACGAGCTA 58.805 50.000 0.00 0.00 0.00 3.32
1850 2080 0.449388 CAAATGCAGGGAAGACGAGC 59.551 55.000 0.00 0.00 0.00 5.03
1857 2087 1.912763 GGTGGCCAAATGCAGGGAA 60.913 57.895 7.24 0.00 43.89 3.97
1897 2127 1.951895 GCCCTGATGAGATGTGCACAA 60.952 52.381 25.72 7.65 0.00 3.33
1900 2130 0.393402 GTGCCCTGATGAGATGTGCA 60.393 55.000 0.00 0.00 0.00 4.57
1907 2137 2.124983 CCCGTGTGCCCTGATGAG 60.125 66.667 0.00 0.00 0.00 2.90
1934 2164 1.528776 GATCTCCGGGTACGCTCCT 60.529 63.158 0.00 0.00 39.22 3.69
2030 2269 4.344865 GCCTTGGGGTTCAGCGGA 62.345 66.667 0.00 0.00 34.45 5.54
2159 2398 2.571757 CTGAGGAAGCGGCGTACA 59.428 61.111 9.37 0.00 0.00 2.90
2477 2716 3.673597 TCGCCCTCCTCCTCCTGT 61.674 66.667 0.00 0.00 0.00 4.00
3162 3411 5.011635 TCCAGTGTCAGATACAGTAAAGCAA 59.988 40.000 0.00 0.00 39.88 3.91
3163 3412 4.526650 TCCAGTGTCAGATACAGTAAAGCA 59.473 41.667 0.00 0.00 39.88 3.91
3164 3413 4.865365 GTCCAGTGTCAGATACAGTAAAGC 59.135 45.833 0.00 0.00 39.88 3.51
3165 3414 6.025749 TGTCCAGTGTCAGATACAGTAAAG 57.974 41.667 0.00 0.00 39.88 1.85
3166 3415 6.413783 TTGTCCAGTGTCAGATACAGTAAA 57.586 37.500 0.00 0.00 39.88 2.01
3169 3418 5.012046 TGAATTGTCCAGTGTCAGATACAGT 59.988 40.000 0.00 0.00 42.76 3.55
3176 3425 3.253921 TGCAATGAATTGTCCAGTGTCAG 59.746 43.478 5.02 0.00 39.88 3.51
3185 3434 6.989169 AGTACTCCTAGATGCAATGAATTGTC 59.011 38.462 5.02 0.00 39.88 3.18
3271 3524 2.591429 CTGGCGCCACTGTTCACA 60.591 61.111 29.03 0.00 0.00 3.58
3302 3555 0.677731 AAGGCACACGACCATGATGG 60.678 55.000 10.53 10.53 45.02 3.51
3326 3579 0.255890 GGGGTGCTGGCTATCTTGAA 59.744 55.000 0.00 0.00 0.00 2.69
3396 3649 9.183368 CTAGTATACTCCATAGATGCATCTTGA 57.817 37.037 32.94 23.65 38.32 3.02
3436 3689 3.774766 ACAAGGGTATGTAGATGCACTCA 59.225 43.478 0.00 0.00 25.83 3.41
3600 3853 0.850883 TCCTTCCCCCTTGCTGGATT 60.851 55.000 0.00 0.00 38.35 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.