Multiple sequence alignment - TraesCS4D01G242400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G242400 chr4D 100.000 5139 0 0 1 5139 405058264 405053126 0.000000e+00 9491.0
1 TraesCS4D01G242400 chr4B 94.798 2826 103 28 2204 4994 502970963 502968147 0.000000e+00 4364.0
2 TraesCS4D01G242400 chr4B 95.560 1126 33 4 824 1949 502972069 502970961 0.000000e+00 1786.0
3 TraesCS4D01G242400 chr4B 95.520 625 22 5 1 623 502995927 502995307 0.000000e+00 994.0
4 TraesCS4D01G242400 chr4B 89.781 274 23 2 1939 2207 661374847 661375120 3.810000e-91 346.0
5 TraesCS4D01G242400 chr4B 84.568 162 6 4 4996 5139 502968062 502967902 5.360000e-30 143.0
6 TraesCS4D01G242400 chr4B 96.226 53 1 1 641 692 502995315 502995263 9.170000e-13 86.1
7 TraesCS4D01G242400 chr4A 95.505 1090 38 6 862 1949 62554137 62553057 0.000000e+00 1731.0
8 TraesCS4D01G242400 chr4A 91.340 843 51 9 3720 4550 62552098 62551266 0.000000e+00 1133.0
9 TraesCS4D01G242400 chr4A 92.122 622 28 4 4537 5139 62551201 62550582 0.000000e+00 857.0
10 TraesCS4D01G242400 chr4A 88.500 600 44 12 2204 2793 62553059 62552475 0.000000e+00 702.0
11 TraesCS4D01G242400 chr4A 93.411 258 15 2 426 682 62554537 62554281 1.040000e-101 381.0
12 TraesCS4D01G242400 chr4A 88.213 263 29 2 3463 3723 62552441 62552179 3.860000e-81 313.0
13 TraesCS4D01G242400 chr4A 96.196 184 7 0 79 262 62556961 62556778 8.360000e-78 302.0
14 TraesCS4D01G242400 chr4A 96.094 128 4 1 250 377 62554662 62554536 1.880000e-49 207.0
15 TraesCS4D01G242400 chr4A 97.531 81 2 0 1 81 62557121 62557041 6.940000e-29 139.0
16 TraesCS4D01G242400 chr5D 86.698 639 76 8 57 689 408441186 408441821 0.000000e+00 701.0
17 TraesCS4D01G242400 chr5D 90.909 264 19 2 1948 2206 472804739 472805002 2.940000e-92 350.0
18 TraesCS4D01G242400 chr5A 85.622 619 82 6 56 671 514300971 514301585 1.210000e-180 643.0
19 TraesCS4D01G242400 chr5B 85.099 604 78 8 57 655 489988948 489989544 1.580000e-169 606.0
20 TraesCS4D01G242400 chr5B 91.288 264 18 2 1948 2206 326580437 326580700 6.330000e-94 355.0
21 TraesCS4D01G242400 chr5B 90.909 264 19 2 1948 2206 508061714 508061977 2.940000e-92 350.0
22 TraesCS4D01G242400 chr6A 92.045 264 16 1 1948 2206 70420800 70420537 2.920000e-97 366.0
23 TraesCS4D01G242400 chr7D 91.321 265 18 2 1948 2207 445953834 445954098 1.760000e-94 357.0
24 TraesCS4D01G242400 chr1B 91.288 264 18 2 1948 2206 505094212 505094475 6.330000e-94 355.0
25 TraesCS4D01G242400 chr1B 90.909 264 19 2 1948 2206 58253324 58253061 2.940000e-92 350.0
26 TraesCS4D01G242400 chr3B 88.153 287 29 1 1925 2206 754259522 754259808 2.290000e-88 337.0
27 TraesCS4D01G242400 chr3B 76.492 553 120 9 56 604 155522605 155523151 5.030000e-75 292.0
28 TraesCS4D01G242400 chr3D 85.211 142 21 0 298 439 590444445 590444586 4.150000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G242400 chr4D 405053126 405058264 5138 True 9491.000000 9491 100.000000 1 5139 1 chr4D.!!$R1 5138
1 TraesCS4D01G242400 chr4B 502967902 502972069 4167 True 2097.666667 4364 91.642000 824 5139 3 chr4B.!!$R1 4315
2 TraesCS4D01G242400 chr4B 502995263 502995927 664 True 540.050000 994 95.873000 1 692 2 chr4B.!!$R2 691
3 TraesCS4D01G242400 chr4A 62550582 62557121 6539 True 640.555556 1731 93.212444 1 5139 9 chr4A.!!$R1 5138
4 TraesCS4D01G242400 chr5D 408441186 408441821 635 False 701.000000 701 86.698000 57 689 1 chr5D.!!$F1 632
5 TraesCS4D01G242400 chr5A 514300971 514301585 614 False 643.000000 643 85.622000 56 671 1 chr5A.!!$F1 615
6 TraesCS4D01G242400 chr5B 489988948 489989544 596 False 606.000000 606 85.099000 57 655 1 chr5B.!!$F2 598
7 TraesCS4D01G242400 chr3B 155522605 155523151 546 False 292.000000 292 76.492000 56 604 1 chr3B.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 2988 0.179097 GCTTCGAGCCCAGACCTTAG 60.179 60.0 0.00 0.00 34.48 2.18 F
900 3120 0.865769 GCGACTCAAACACACGGAAT 59.134 50.0 0.00 0.00 0.00 3.01 F
2610 4834 0.809636 CACACACACACCGCTTCTCA 60.810 55.0 0.00 0.00 0.00 3.27 F
2912 5148 0.179121 CTAGGACAACCGCATGCGTA 60.179 55.0 35.55 19.61 41.83 4.42 F
3995 6357 0.672401 CGCGGCCAAGGAGAAACTTA 60.672 55.0 2.24 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2189 4411 0.893447 CGTTACTCCCTCCGTCCTTT 59.107 55.000 0.00 0.00 0.00 3.11 R
2897 5133 0.937304 ATCATACGCATGCGGTTGTC 59.063 50.000 39.95 0.00 44.69 3.18 R
3443 5706 1.043022 ACCGACGTGTTTAGAGGGTT 58.957 50.000 0.00 0.00 0.00 4.11 R
4024 6386 1.250840 GCCATTTCTTCCGCTTGGGT 61.251 55.000 0.00 0.00 37.00 4.51 R
4925 7366 1.066143 ACACGCAACCTTAGGATGAGG 60.066 52.381 12.87 5.69 40.24 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 278 6.817765 TTCTCTTGAATTATGGAACCACAC 57.182 37.500 0.00 0.00 0.00 3.82
444 2658 5.740513 GCAGAGGTTGGAGAGGTGATAATAC 60.741 48.000 0.00 0.00 0.00 1.89
505 2719 2.664851 TTCACCTGCTCGGTTGCG 60.665 61.111 0.00 0.00 46.37 4.85
522 2738 2.409012 TGCGCGTTTACTCTGAAATGA 58.591 42.857 8.43 0.00 0.00 2.57
560 2777 0.460284 CCTCACGGTGTGCCTGATAC 60.460 60.000 8.17 0.00 32.98 2.24
581 2798 3.397955 ACCATAGACTCTTTGGTTGGGTT 59.602 43.478 13.82 0.00 41.68 4.11
639 2857 1.974236 GGTGATGGTAGGGATCTCTGG 59.026 57.143 4.99 0.00 0.00 3.86
671 2889 7.012989 GCTGGACCCTATGAAAATTACGTAATT 59.987 37.037 24.43 24.43 37.49 1.40
704 2922 8.945481 TTTTTATAATGTACCGCACTTAGCTA 57.055 30.769 0.00 0.00 42.61 3.32
705 2923 8.945481 TTTTATAATGTACCGCACTTAGCTAA 57.055 30.769 5.94 5.94 42.61 3.09
708 2926 7.852971 ATAATGTACCGCACTTAGCTAAAAA 57.147 32.000 7.74 0.00 42.61 1.94
709 2927 6.753107 AATGTACCGCACTTAGCTAAAAAT 57.247 33.333 7.74 0.00 42.61 1.82
710 2928 5.539582 TGTACCGCACTTAGCTAAAAATG 57.460 39.130 7.74 7.54 42.61 2.32
712 2930 5.470777 TGTACCGCACTTAGCTAAAAATGTT 59.529 36.000 7.74 0.00 42.61 2.71
713 2931 4.794169 ACCGCACTTAGCTAAAAATGTTG 58.206 39.130 7.74 5.00 42.61 3.33
714 2932 4.277423 ACCGCACTTAGCTAAAAATGTTGT 59.723 37.500 7.74 5.52 42.61 3.32
715 2933 4.616802 CCGCACTTAGCTAAAAATGTTGTG 59.383 41.667 7.74 10.85 42.61 3.33
716 2934 5.448438 CGCACTTAGCTAAAAATGTTGTGA 58.552 37.500 18.65 0.00 42.61 3.58
717 2935 6.086222 CGCACTTAGCTAAAAATGTTGTGAT 58.914 36.000 18.65 0.00 42.61 3.06
718 2936 6.032775 CGCACTTAGCTAAAAATGTTGTGATG 59.967 38.462 18.65 9.54 42.61 3.07
720 2938 7.061094 GCACTTAGCTAAAAATGTTGTGATGAC 59.939 37.037 18.65 3.10 41.15 3.06
722 2940 5.689383 AGCTAAAAATGTTGTGATGACGT 57.311 34.783 0.00 0.00 0.00 4.34
723 2941 6.072112 AGCTAAAAATGTTGTGATGACGTT 57.928 33.333 0.00 0.00 0.00 3.99
724 2942 5.914635 AGCTAAAAATGTTGTGATGACGTTG 59.085 36.000 0.00 0.00 0.00 4.10
725 2943 5.912396 GCTAAAAATGTTGTGATGACGTTGA 59.088 36.000 0.00 0.00 0.00 3.18
728 2946 7.851822 AAAAATGTTGTGATGACGTTGATAC 57.148 32.000 0.00 0.00 0.00 2.24
729 2947 6.801539 AAATGTTGTGATGACGTTGATACT 57.198 33.333 0.00 0.00 0.00 2.12
730 2948 6.408858 AATGTTGTGATGACGTTGATACTC 57.591 37.500 0.00 0.00 0.00 2.59
731 2949 3.917985 TGTTGTGATGACGTTGATACTCG 59.082 43.478 0.00 0.00 0.00 4.18
732 2950 3.842732 TGTGATGACGTTGATACTCGT 57.157 42.857 0.00 0.00 43.00 4.18
733 2951 4.168922 TGTGATGACGTTGATACTCGTT 57.831 40.909 0.00 0.00 40.39 3.85
734 2952 4.552355 TGTGATGACGTTGATACTCGTTT 58.448 39.130 0.00 0.00 40.39 3.60
735 2953 4.986034 TGTGATGACGTTGATACTCGTTTT 59.014 37.500 0.00 0.00 40.39 2.43
736 2954 5.107645 TGTGATGACGTTGATACTCGTTTTG 60.108 40.000 0.00 0.00 40.39 2.44
737 2955 3.781341 TGACGTTGATACTCGTTTTGC 57.219 42.857 0.00 0.00 40.39 3.68
738 2956 3.386486 TGACGTTGATACTCGTTTTGCT 58.614 40.909 0.00 0.00 40.39 3.91
739 2957 3.183574 TGACGTTGATACTCGTTTTGCTG 59.816 43.478 0.00 0.00 40.39 4.41
740 2958 2.478894 ACGTTGATACTCGTTTTGCTGG 59.521 45.455 0.00 0.00 36.93 4.85
742 2960 3.059188 CGTTGATACTCGTTTTGCTGGTT 60.059 43.478 0.00 0.00 0.00 3.67
744 2962 4.002906 TGATACTCGTTTTGCTGGTTCT 57.997 40.909 0.00 0.00 0.00 3.01
745 2963 3.745975 TGATACTCGTTTTGCTGGTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
746 2964 1.308998 ACTCGTTTTGCTGGTTCTGG 58.691 50.000 0.00 0.00 0.00 3.86
747 2965 0.593128 CTCGTTTTGCTGGTTCTGGG 59.407 55.000 0.00 0.00 0.00 4.45
749 2967 0.310854 CGTTTTGCTGGTTCTGGGAC 59.689 55.000 0.00 0.00 0.00 4.46
750 2968 0.310854 GTTTTGCTGGTTCTGGGACG 59.689 55.000 0.00 0.00 0.00 4.79
751 2969 0.821711 TTTTGCTGGTTCTGGGACGG 60.822 55.000 0.00 0.00 0.00 4.79
752 2970 3.842925 TTGCTGGTTCTGGGACGGC 62.843 63.158 0.00 0.00 32.53 5.68
753 2971 4.021925 GCTGGTTCTGGGACGGCT 62.022 66.667 0.00 0.00 32.53 5.52
754 2972 2.750350 CTGGTTCTGGGACGGCTT 59.250 61.111 0.00 0.00 32.53 4.35
755 2973 1.376037 CTGGTTCTGGGACGGCTTC 60.376 63.158 0.00 0.00 32.53 3.86
757 2975 2.654877 GTTCTGGGACGGCTTCGA 59.345 61.111 0.00 0.00 37.63 3.71
758 2976 1.446272 GTTCTGGGACGGCTTCGAG 60.446 63.158 0.00 0.00 37.63 4.04
759 2977 3.296709 TTCTGGGACGGCTTCGAGC 62.297 63.158 0.00 0.00 41.46 5.03
768 2986 2.665603 GCTTCGAGCCCAGACCTT 59.334 61.111 0.00 0.00 34.48 3.50
769 2987 1.898154 GCTTCGAGCCCAGACCTTA 59.102 57.895 0.00 0.00 34.48 2.69
770 2988 0.179097 GCTTCGAGCCCAGACCTTAG 60.179 60.000 0.00 0.00 34.48 2.18
771 2989 1.475403 CTTCGAGCCCAGACCTTAGA 58.525 55.000 0.00 0.00 0.00 2.10
772 2990 1.825474 CTTCGAGCCCAGACCTTAGAA 59.175 52.381 0.00 0.00 0.00 2.10
774 2992 1.549170 TCGAGCCCAGACCTTAGAAAC 59.451 52.381 0.00 0.00 0.00 2.78
777 2995 3.339141 GAGCCCAGACCTTAGAAACTTG 58.661 50.000 0.00 0.00 0.00 3.16
778 2996 2.040412 AGCCCAGACCTTAGAAACTTGG 59.960 50.000 0.00 0.00 0.00 3.61
779 2997 2.224793 GCCCAGACCTTAGAAACTTGGT 60.225 50.000 0.00 0.00 35.23 3.67
780 2998 3.412386 CCCAGACCTTAGAAACTTGGTG 58.588 50.000 0.00 0.00 32.30 4.17
781 2999 3.412386 CCAGACCTTAGAAACTTGGTGG 58.588 50.000 0.00 0.00 32.30 4.61
782 3000 3.181443 CCAGACCTTAGAAACTTGGTGGT 60.181 47.826 0.00 0.00 32.30 4.16
783 3001 4.461198 CAGACCTTAGAAACTTGGTGGTT 58.539 43.478 0.00 0.00 32.30 3.67
784 3002 4.887655 CAGACCTTAGAAACTTGGTGGTTT 59.112 41.667 0.00 0.00 41.40 3.27
801 3021 5.296035 GGTGGTTTCTGGTAATAGAAATCGG 59.704 44.000 4.49 0.00 46.11 4.18
806 3026 5.455056 TCTGGTAATAGAAATCGGAGAGC 57.545 43.478 0.00 0.00 43.63 4.09
861 3081 1.646912 TTGACGATACACCCCTTCCA 58.353 50.000 0.00 0.00 0.00 3.53
865 3085 3.009695 TGACGATACACCCCTTCCAAAAT 59.990 43.478 0.00 0.00 0.00 1.82
900 3120 0.865769 GCGACTCAAACACACGGAAT 59.134 50.000 0.00 0.00 0.00 3.01
910 3130 1.559682 ACACACGGAATTGCCCTATCT 59.440 47.619 0.00 0.00 0.00 1.98
1401 3622 2.416432 GCTCTACCGCCGTCTTCCT 61.416 63.158 0.00 0.00 0.00 3.36
1441 3662 2.574399 GTGAGTCACCTCGCCTCC 59.426 66.667 12.54 0.00 41.45 4.30
1464 3685 6.818142 TCCACAGTCTACATTGTTCATACATG 59.182 38.462 0.00 0.00 33.44 3.21
1673 3895 5.324832 TTTCCTTGGAGTCCTTGAAATCT 57.675 39.130 11.33 0.00 0.00 2.40
1727 3949 3.857157 AAGCTTCCACTCAAGGTACAA 57.143 42.857 0.00 0.00 32.86 2.41
1728 3950 4.373156 AAGCTTCCACTCAAGGTACAAT 57.627 40.909 0.00 0.00 32.86 2.71
1729 3951 5.499004 AAGCTTCCACTCAAGGTACAATA 57.501 39.130 0.00 0.00 32.86 1.90
1730 3952 4.833390 AGCTTCCACTCAAGGTACAATAC 58.167 43.478 0.00 0.00 32.24 1.89
1731 3953 4.286032 AGCTTCCACTCAAGGTACAATACA 59.714 41.667 0.00 0.00 32.24 2.29
1738 3960 6.538742 CCACTCAAGGTACAATACAACCTATG 59.461 42.308 0.00 0.00 45.51 2.23
1762 3984 9.950496 ATGATGATTTACATGGTTATCTCTACC 57.050 33.333 0.00 0.00 39.56 3.18
1880 4102 4.154195 CACAGCTAAGATAAGGTTTTGCGT 59.846 41.667 0.00 0.00 31.78 5.24
1953 4175 9.664777 ATTTATTCCTATTTAGGTTTTACCCCC 57.335 33.333 3.62 0.00 44.02 5.40
1954 4176 6.938246 ATTCCTATTTAGGTTTTACCCCCT 57.062 37.500 3.62 0.00 44.02 4.79
1955 4177 5.981494 TCCTATTTAGGTTTTACCCCCTC 57.019 43.478 3.62 0.00 44.02 4.30
1956 4178 4.728350 TCCTATTTAGGTTTTACCCCCTCC 59.272 45.833 3.62 0.00 44.02 4.30
1957 4179 3.657398 ATTTAGGTTTTACCCCCTCCG 57.343 47.619 0.00 0.00 39.75 4.63
1958 4180 2.043307 TTAGGTTTTACCCCCTCCGT 57.957 50.000 0.00 0.00 39.75 4.69
1959 4181 2.938428 TAGGTTTTACCCCCTCCGTA 57.062 50.000 0.00 0.00 39.75 4.02
1960 4182 1.279496 AGGTTTTACCCCCTCCGTAC 58.721 55.000 0.00 0.00 39.75 3.67
1961 4183 1.203351 AGGTTTTACCCCCTCCGTACT 60.203 52.381 0.00 0.00 39.75 2.73
1962 4184 1.630369 GGTTTTACCCCCTCCGTACTT 59.370 52.381 0.00 0.00 30.04 2.24
1963 4185 2.040278 GGTTTTACCCCCTCCGTACTTT 59.960 50.000 0.00 0.00 30.04 2.66
1964 4186 3.076621 GTTTTACCCCCTCCGTACTTTG 58.923 50.000 0.00 0.00 0.00 2.77
1965 4187 2.323999 TTACCCCCTCCGTACTTTGA 57.676 50.000 0.00 0.00 0.00 2.69
1966 4188 2.323999 TACCCCCTCCGTACTTTGAA 57.676 50.000 0.00 0.00 0.00 2.69
1967 4189 0.981943 ACCCCCTCCGTACTTTGAAG 59.018 55.000 0.00 0.00 0.00 3.02
1968 4190 1.272807 CCCCCTCCGTACTTTGAAGA 58.727 55.000 0.00 0.00 0.00 2.87
1969 4191 1.066358 CCCCCTCCGTACTTTGAAGAC 60.066 57.143 0.00 0.00 0.00 3.01
1970 4192 1.900486 CCCCTCCGTACTTTGAAGACT 59.100 52.381 0.00 0.00 0.00 3.24
1971 4193 2.353803 CCCCTCCGTACTTTGAAGACTG 60.354 54.545 0.00 0.00 0.00 3.51
1972 4194 2.299297 CCCTCCGTACTTTGAAGACTGT 59.701 50.000 0.00 0.00 0.00 3.55
1973 4195 3.508793 CCCTCCGTACTTTGAAGACTGTA 59.491 47.826 0.00 0.00 0.00 2.74
1974 4196 4.483311 CCTCCGTACTTTGAAGACTGTAC 58.517 47.826 0.00 0.00 33.89 2.90
1975 4197 4.217983 CCTCCGTACTTTGAAGACTGTACT 59.782 45.833 0.00 0.00 34.75 2.73
1976 4198 5.278858 CCTCCGTACTTTGAAGACTGTACTT 60.279 44.000 0.00 0.00 34.75 2.24
1977 4199 6.152932 TCCGTACTTTGAAGACTGTACTTT 57.847 37.500 0.00 0.00 34.75 2.66
1978 4200 6.211515 TCCGTACTTTGAAGACTGTACTTTC 58.788 40.000 0.00 0.00 34.75 2.62
1979 4201 5.981315 CCGTACTTTGAAGACTGTACTTTCA 59.019 40.000 0.00 0.00 34.75 2.69
1980 4202 6.477688 CCGTACTTTGAAGACTGTACTTTCAA 59.522 38.462 9.27 9.27 34.75 2.69
1981 4203 7.335491 CGTACTTTGAAGACTGTACTTTCAAC 58.665 38.462 11.68 4.18 34.75 3.18
1982 4204 7.222224 CGTACTTTGAAGACTGTACTTTCAACT 59.778 37.037 11.68 5.80 34.75 3.16
1983 4205 7.923414 ACTTTGAAGACTGTACTTTCAACTT 57.077 32.000 11.68 0.00 0.00 2.66
1984 4206 8.336801 ACTTTGAAGACTGTACTTTCAACTTT 57.663 30.769 11.68 1.49 0.00 2.66
1985 4207 8.237267 ACTTTGAAGACTGTACTTTCAACTTTG 58.763 33.333 11.68 7.40 0.00 2.77
1986 4208 7.681939 TTGAAGACTGTACTTTCAACTTTGT 57.318 32.000 9.27 0.00 0.00 2.83
1987 4209 7.681939 TGAAGACTGTACTTTCAACTTTGTT 57.318 32.000 0.00 0.00 0.00 2.83
1988 4210 7.526608 TGAAGACTGTACTTTCAACTTTGTTG 58.473 34.615 4.25 4.25 0.00 3.33
1989 4211 6.436843 AGACTGTACTTTCAACTTTGTTGG 57.563 37.500 10.05 0.00 0.00 3.77
1990 4212 6.177610 AGACTGTACTTTCAACTTTGTTGGA 58.822 36.000 10.05 0.00 0.00 3.53
1991 4213 6.657541 AGACTGTACTTTCAACTTTGTTGGAA 59.342 34.615 10.05 7.19 0.00 3.53
1992 4214 7.175990 AGACTGTACTTTCAACTTTGTTGGAAA 59.824 33.333 10.05 8.44 0.00 3.13
1998 4220 7.832503 CTTTCAACTTTGTTGGAAAGTCAAT 57.167 32.000 10.05 0.00 40.64 2.57
1999 4221 8.255394 CTTTCAACTTTGTTGGAAAGTCAATT 57.745 30.769 10.05 0.00 40.64 2.32
2000 4222 8.614469 TTTCAACTTTGTTGGAAAGTCAATTT 57.386 26.923 10.05 0.00 39.36 1.82
2001 4223 8.614469 TTCAACTTTGTTGGAAAGTCAATTTT 57.386 26.923 10.05 0.00 39.36 1.82
2002 4224 8.614469 TCAACTTTGTTGGAAAGTCAATTTTT 57.386 26.923 10.05 0.00 39.36 1.94
2058 4280 9.985730 ACACCAATATTTATGCCATCAAATTAG 57.014 29.630 0.00 0.00 0.00 1.73
2059 4281 9.985730 CACCAATATTTATGCCATCAAATTAGT 57.014 29.630 0.00 0.00 0.00 2.24
2068 4290 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
2069 4291 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
2070 4292 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
2071 4293 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
2072 4294 8.786898 GCCATCAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
2144 4366 9.562583 TTAATATATTTTTGCACAAACTCGGTC 57.437 29.630 2.68 0.00 0.00 4.79
2145 4367 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
2146 4368 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
2147 4369 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
2148 4370 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
2149 4371 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
2150 4372 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
2151 4373 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
2152 4374 3.690139 TGCACAAACTCGGTCAAACTTTA 59.310 39.130 0.00 0.00 0.00 1.85
2153 4375 4.201871 TGCACAAACTCGGTCAAACTTTAG 60.202 41.667 0.00 0.00 0.00 1.85
2154 4376 4.201881 GCACAAACTCGGTCAAACTTTAGT 60.202 41.667 0.00 0.00 0.00 2.24
2155 4377 5.675323 GCACAAACTCGGTCAAACTTTAGTT 60.675 40.000 0.00 0.00 40.50 2.24
2167 4389 5.847111 AAACTTTAGTTTGACCCTCCAAC 57.153 39.130 7.05 0.00 45.55 3.77
2168 4390 4.513406 ACTTTAGTTTGACCCTCCAACA 57.487 40.909 0.00 0.00 0.00 3.33
2169 4391 4.862371 ACTTTAGTTTGACCCTCCAACAA 58.138 39.130 0.00 0.00 0.00 2.83
2170 4392 5.265989 ACTTTAGTTTGACCCTCCAACAAA 58.734 37.500 0.00 0.00 0.00 2.83
2171 4393 5.359860 ACTTTAGTTTGACCCTCCAACAAAG 59.640 40.000 0.00 0.00 34.86 2.77
2172 4394 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
2173 4395 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
2174 4396 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
2175 4397 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
2176 4398 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
2177 4399 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
2178 4400 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
2179 4401 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
2180 4402 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
2181 4403 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
2182 4404 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
2183 4405 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
2184 4406 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
2185 4407 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
2186 4408 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
2187 4409 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
2188 4410 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
2189 4411 7.066525 CCAACAAAGTTGGAAGTACACTCTTTA 59.933 37.037 21.24 0.00 42.06 1.85
2190 4412 8.455682 CAACAAAGTTGGAAGTACACTCTTTAA 58.544 33.333 2.05 0.00 0.00 1.52
2191 4413 8.570068 ACAAAGTTGGAAGTACACTCTTTAAA 57.430 30.769 0.00 0.00 0.00 1.52
2192 4414 8.674607 ACAAAGTTGGAAGTACACTCTTTAAAG 58.325 33.333 9.04 9.04 0.00 1.85
2193 4415 7.803279 AAGTTGGAAGTACACTCTTTAAAGG 57.197 36.000 15.13 8.48 0.00 3.11
2194 4416 7.133133 AGTTGGAAGTACACTCTTTAAAGGA 57.867 36.000 15.13 1.82 0.00 3.36
2195 4417 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
2196 4418 5.535333 TGGAAGTACACTCTTTAAAGGACG 58.465 41.667 15.13 6.90 0.00 4.79
2197 4419 4.928020 GGAAGTACACTCTTTAAAGGACGG 59.072 45.833 15.13 5.64 0.00 4.79
2198 4420 5.279156 GGAAGTACACTCTTTAAAGGACGGA 60.279 44.000 15.13 0.00 0.00 4.69
2199 4421 5.388408 AGTACACTCTTTAAAGGACGGAG 57.612 43.478 15.13 7.51 0.00 4.63
2200 4422 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
2201 4423 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
2202 4424 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
2203 4425 2.832733 ACTCTTTAAAGGACGGAGGGAG 59.167 50.000 15.13 4.81 0.00 4.30
2204 4426 2.832733 CTCTTTAAAGGACGGAGGGAGT 59.167 50.000 15.13 0.00 0.00 3.85
2205 4427 4.021916 CTCTTTAAAGGACGGAGGGAGTA 58.978 47.826 15.13 0.00 0.00 2.59
2206 4428 4.419282 TCTTTAAAGGACGGAGGGAGTAA 58.581 43.478 15.13 0.00 0.00 2.24
2207 4429 4.221482 TCTTTAAAGGACGGAGGGAGTAAC 59.779 45.833 15.13 0.00 0.00 2.50
2208 4430 0.893447 AAAGGACGGAGGGAGTAACG 59.107 55.000 0.00 0.00 0.00 3.18
2328 4550 4.082026 GCAATTGCAAACTGGACCTAGAAT 60.082 41.667 25.36 0.00 41.59 2.40
2336 4558 6.127980 GCAAACTGGACCTAGAATAGTTTTCC 60.128 42.308 3.30 0.00 38.96 3.13
2386 4608 9.236006 ACAGCTATTGATTTTGTCATTAGTTCT 57.764 29.630 0.00 0.00 40.47 3.01
2561 4784 4.593157 TGCACACAAACGAAGAAATACAC 58.407 39.130 0.00 0.00 0.00 2.90
2610 4834 0.809636 CACACACACACCGCTTCTCA 60.810 55.000 0.00 0.00 0.00 3.27
2620 4844 1.221466 CCGCTTCTCACAAGTTGCGA 61.221 55.000 1.81 0.00 42.87 5.10
2690 4914 3.071874 TCCCAGGTAGAACTTGCATTG 57.928 47.619 0.00 0.00 0.00 2.82
2730 4957 2.288640 TGATGATCAGCATACTCCAGCG 60.289 50.000 10.16 0.00 37.34 5.18
2861 5097 3.375299 GCATACATTTCAGCTTCTTCCGT 59.625 43.478 0.00 0.00 0.00 4.69
2897 5133 9.093970 TGTATCGATATTTTTGACACAACTAGG 57.906 33.333 8.66 0.00 0.00 3.02
2912 5148 0.179121 CTAGGACAACCGCATGCGTA 60.179 55.000 35.55 19.61 41.83 4.42
2947 5183 1.067295 ACTCCAACTGAAGCATCCCA 58.933 50.000 0.00 0.00 0.00 4.37
3015 5259 2.112815 GGCCGTGCCCATGAGTTAC 61.113 63.158 0.00 0.00 44.06 2.50
3059 5305 3.953612 ACACCTTCTCAACATCAAGCAAA 59.046 39.130 0.00 0.00 0.00 3.68
3098 5344 4.207165 CCTTTTCCTTTCACACCTTCAGA 58.793 43.478 0.00 0.00 0.00 3.27
3107 5353 5.651387 TTCACACCTTCAGATCTAGAGTG 57.349 43.478 0.00 3.94 0.00 3.51
3129 5375 1.818674 CTGTTTTGTATGGACTGGGCC 59.181 52.381 0.00 0.00 0.00 5.80
3184 5430 7.624549 ACAGTAGCATCTCCTTAAGAATGAAA 58.375 34.615 3.36 0.00 37.61 2.69
3210 5456 2.170607 TCATTCCTAGGTGCCAAGCTAC 59.829 50.000 9.08 0.00 35.29 3.58
3228 5474 4.018415 AGCTACCCAAAGCATAAGAGGAAA 60.018 41.667 0.00 0.00 45.30 3.13
3264 5510 7.787904 AGTATGGTCCTGTATACCTGAACATAA 59.212 37.037 21.69 10.43 38.67 1.90
3265 5511 7.633018 ATGGTCCTGTATACCTGAACATAAT 57.367 36.000 16.49 0.00 33.56 1.28
3267 5513 7.506114 TGGTCCTGTATACCTGAACATAATTC 58.494 38.462 5.60 0.00 37.91 2.17
3268 5514 7.347222 TGGTCCTGTATACCTGAACATAATTCT 59.653 37.037 5.60 0.00 37.91 2.40
3269 5515 7.657761 GGTCCTGTATACCTGAACATAATTCTG 59.342 40.741 0.00 0.00 33.97 3.02
3271 5517 9.159254 TCCTGTATACCTGAACATAATTCTGAT 57.841 33.333 0.00 0.00 0.00 2.90
3274 5520 9.929180 TGTATACCTGAACATAATTCTGATAGC 57.071 33.333 0.00 0.00 0.00 2.97
3279 5525 8.928448 ACCTGAACATAATTCTGATAGCTAGAA 58.072 33.333 0.00 0.00 38.42 2.10
3280 5526 9.202273 CCTGAACATAATTCTGATAGCTAGAAC 57.798 37.037 0.00 0.00 37.03 3.01
3281 5527 9.755804 CTGAACATAATTCTGATAGCTAGAACA 57.244 33.333 0.00 0.00 37.03 3.18
3301 5563 3.490896 ACATATGTCGCTTCATGCTAACG 59.509 43.478 1.41 0.00 40.11 3.18
3316 5578 3.748568 TGCTAACGTTCATGCACATTACA 59.251 39.130 2.82 0.00 0.00 2.41
3334 5596 6.551227 ACATTACAGTCATGTCCTAGCTATCA 59.449 38.462 0.00 0.00 41.01 2.15
3336 5598 5.720371 ACAGTCATGTCCTAGCTATCATC 57.280 43.478 0.00 0.00 32.99 2.92
3338 5600 4.217334 CAGTCATGTCCTAGCTATCATCGT 59.783 45.833 0.00 0.00 0.00 3.73
3375 5638 3.585862 TGTCGCAACTACCAGAATTCTC 58.414 45.455 4.57 0.00 0.00 2.87
3409 5672 4.327087 GCCATTTATTTTTCTTGGTCGCTG 59.673 41.667 0.00 0.00 0.00 5.18
3410 5673 5.708948 CCATTTATTTTTCTTGGTCGCTGA 58.291 37.500 0.00 0.00 0.00 4.26
3443 5706 3.068024 GTCACTTGCCATCCAAAAACTCA 59.932 43.478 0.00 0.00 31.94 3.41
3445 5708 3.803778 CACTTGCCATCCAAAAACTCAAC 59.196 43.478 0.00 0.00 31.94 3.18
3448 5711 1.970640 GCCATCCAAAAACTCAACCCT 59.029 47.619 0.00 0.00 0.00 4.34
3449 5712 2.029020 GCCATCCAAAAACTCAACCCTC 60.029 50.000 0.00 0.00 0.00 4.30
3450 5713 3.500343 CCATCCAAAAACTCAACCCTCT 58.500 45.455 0.00 0.00 0.00 3.69
3451 5714 4.662278 CCATCCAAAAACTCAACCCTCTA 58.338 43.478 0.00 0.00 0.00 2.43
3452 5715 5.076873 CCATCCAAAAACTCAACCCTCTAA 58.923 41.667 0.00 0.00 0.00 2.10
3476 5741 7.975866 AACACGTCGGTATACTTTACAATAG 57.024 36.000 2.25 0.00 0.00 1.73
3556 5821 3.126343 CGGTGAACCAACTTATAAGCACC 59.874 47.826 19.75 19.75 40.73 5.01
3567 5832 5.238583 ACTTATAAGCACCTGTGACTGAAC 58.761 41.667 12.54 0.00 0.00 3.18
3592 5857 7.015195 ACAAACACCCATTTTTATCTTACAGCT 59.985 33.333 0.00 0.00 0.00 4.24
3753 6104 2.915349 ACAGCTTCATGTGAGCCTATG 58.085 47.619 16.53 12.34 30.46 2.23
3786 6141 3.195610 GGCTCCCCTTACATTTTTCCTTG 59.804 47.826 0.00 0.00 0.00 3.61
3995 6357 0.672401 CGCGGCCAAGGAGAAACTTA 60.672 55.000 2.24 0.00 0.00 2.24
4218 6580 6.259608 CCATCTCATTTCAGAACTACCATGTC 59.740 42.308 0.00 0.00 0.00 3.06
4305 6668 0.540923 TGCATGGCCCCTTTTTATGC 59.459 50.000 13.54 13.54 43.21 3.14
4308 6671 1.685355 ATGGCCCCTTTTTATGCGGC 61.685 55.000 0.00 0.00 38.96 6.53
4448 6811 3.192633 ACCTGGTTTTACGAATCAATGGC 59.807 43.478 0.00 0.00 0.00 4.40
4459 6822 5.976458 ACGAATCAATGGCCAATGTTAAAT 58.024 33.333 20.23 3.82 0.00 1.40
4463 6826 9.044150 CGAATCAATGGCCAATGTTAAATAAAT 57.956 29.630 20.23 1.22 0.00 1.40
4627 7068 2.298729 GGCTAAAACCTGATGTGGCAAA 59.701 45.455 0.00 0.00 0.00 3.68
4628 7069 3.317150 GCTAAAACCTGATGTGGCAAAC 58.683 45.455 0.00 0.00 0.00 2.93
4925 7366 5.879237 TGTGAACAGAACATTTCAACAGAC 58.121 37.500 0.00 0.00 33.58 3.51
4982 7423 8.901472 TGATTAGGACAGCTCAAGGTATATAT 57.099 34.615 0.00 0.00 0.00 0.86
4985 7426 8.958060 TTAGGACAGCTCAAGGTATATATTCT 57.042 34.615 0.00 0.00 0.00 2.40
4994 7517 9.646427 GCTCAAGGTATATATTCTAAGGTCTTG 57.354 37.037 0.00 0.00 0.00 3.02
5086 7628 3.494332 GGGCTCTGCAAAATATGAGGAT 58.506 45.455 1.15 0.00 0.00 3.24
5090 7632 6.343703 GGCTCTGCAAAATATGAGGATTTTT 58.656 36.000 1.15 0.00 36.99 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
444 2658 1.659794 CTTCCACAAAAGGGGCACG 59.340 57.895 0.00 0.00 0.00 5.34
505 2719 8.840867 CATTTTAGTTCATTTCAGAGTAAACGC 58.159 33.333 0.00 0.00 0.00 4.84
506 2720 9.878599 ACATTTTAGTTCATTTCAGAGTAAACG 57.121 29.630 0.00 0.00 0.00 3.60
522 2738 6.645415 CGTGAGGTTGAGAGTACATTTTAGTT 59.355 38.462 0.00 0.00 0.00 2.24
560 2777 3.721087 ACCCAACCAAAGAGTCTATGG 57.279 47.619 0.00 0.00 40.16 2.74
639 2857 5.659440 TTTTCATAGGGTCCAGCAAATTC 57.341 39.130 0.00 0.00 0.00 2.17
694 2912 7.061094 GTCATCACAACATTTTTAGCTAAGTGC 59.939 37.037 6.24 0.00 43.29 4.40
696 2914 7.041372 ACGTCATCACAACATTTTTAGCTAAGT 60.041 33.333 6.24 0.00 0.00 2.24
697 2915 7.298122 ACGTCATCACAACATTTTTAGCTAAG 58.702 34.615 6.24 0.00 0.00 2.18
700 2918 5.689383 ACGTCATCACAACATTTTTAGCT 57.311 34.783 0.00 0.00 0.00 3.32
701 2919 5.912396 TCAACGTCATCACAACATTTTTAGC 59.088 36.000 0.00 0.00 0.00 3.09
702 2920 9.051027 GTATCAACGTCATCACAACATTTTTAG 57.949 33.333 0.00 0.00 0.00 1.85
704 2922 7.648142 AGTATCAACGTCATCACAACATTTTT 58.352 30.769 0.00 0.00 0.00 1.94
705 2923 7.202016 AGTATCAACGTCATCACAACATTTT 57.798 32.000 0.00 0.00 0.00 1.82
708 2926 4.562789 CGAGTATCAACGTCATCACAACAT 59.437 41.667 0.00 0.00 33.17 2.71
709 2927 3.917985 CGAGTATCAACGTCATCACAACA 59.082 43.478 0.00 0.00 33.17 3.33
710 2928 3.918591 ACGAGTATCAACGTCATCACAAC 59.081 43.478 0.00 0.00 38.34 3.32
712 2930 3.842732 ACGAGTATCAACGTCATCACA 57.157 42.857 0.00 0.00 38.34 3.58
713 2931 5.305812 CAAAACGAGTATCAACGTCATCAC 58.694 41.667 0.00 0.00 41.87 3.06
714 2932 4.143200 GCAAAACGAGTATCAACGTCATCA 60.143 41.667 0.00 0.00 41.87 3.07
715 2933 4.091509 AGCAAAACGAGTATCAACGTCATC 59.908 41.667 0.00 0.00 41.87 2.92
716 2934 3.994392 AGCAAAACGAGTATCAACGTCAT 59.006 39.130 0.00 0.00 41.87 3.06
717 2935 3.183574 CAGCAAAACGAGTATCAACGTCA 59.816 43.478 0.00 0.00 41.87 4.35
718 2936 3.423123 CCAGCAAAACGAGTATCAACGTC 60.423 47.826 0.00 0.00 41.87 4.34
720 2938 2.478894 ACCAGCAAAACGAGTATCAACG 59.521 45.455 0.00 0.00 33.17 4.10
722 2940 4.213270 CAGAACCAGCAAAACGAGTATCAA 59.787 41.667 0.00 0.00 33.17 2.57
723 2941 3.745975 CAGAACCAGCAAAACGAGTATCA 59.254 43.478 0.00 0.00 33.17 2.15
724 2942 3.125316 CCAGAACCAGCAAAACGAGTATC 59.875 47.826 0.00 0.00 0.00 2.24
725 2943 3.074412 CCAGAACCAGCAAAACGAGTAT 58.926 45.455 0.00 0.00 0.00 2.12
728 2946 0.593128 CCCAGAACCAGCAAAACGAG 59.407 55.000 0.00 0.00 0.00 4.18
729 2947 0.181587 TCCCAGAACCAGCAAAACGA 59.818 50.000 0.00 0.00 0.00 3.85
730 2948 0.310854 GTCCCAGAACCAGCAAAACG 59.689 55.000 0.00 0.00 0.00 3.60
731 2949 0.310854 CGTCCCAGAACCAGCAAAAC 59.689 55.000 0.00 0.00 0.00 2.43
732 2950 0.821711 CCGTCCCAGAACCAGCAAAA 60.822 55.000 0.00 0.00 0.00 2.44
733 2951 1.228124 CCGTCCCAGAACCAGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
734 2952 2.429930 CCGTCCCAGAACCAGCAA 59.570 61.111 0.00 0.00 0.00 3.91
735 2953 4.329545 GCCGTCCCAGAACCAGCA 62.330 66.667 0.00 0.00 0.00 4.41
736 2954 3.553095 AAGCCGTCCCAGAACCAGC 62.553 63.158 0.00 0.00 0.00 4.85
737 2955 1.376037 GAAGCCGTCCCAGAACCAG 60.376 63.158 0.00 0.00 0.00 4.00
738 2956 2.747686 GAAGCCGTCCCAGAACCA 59.252 61.111 0.00 0.00 0.00 3.67
739 2957 2.434359 CGAAGCCGTCCCAGAACC 60.434 66.667 0.00 0.00 0.00 3.62
740 2958 1.446272 CTCGAAGCCGTCCCAGAAC 60.446 63.158 0.00 0.00 37.05 3.01
742 2960 3.760035 GCTCGAAGCCGTCCCAGA 61.760 66.667 0.00 0.00 34.48 3.86
751 2969 0.179097 CTAAGGTCTGGGCTCGAAGC 60.179 60.000 0.00 0.00 41.46 3.86
752 2970 1.475403 TCTAAGGTCTGGGCTCGAAG 58.525 55.000 0.00 0.00 0.00 3.79
753 2971 1.933021 TTCTAAGGTCTGGGCTCGAA 58.067 50.000 0.00 0.00 0.00 3.71
754 2972 1.549170 GTTTCTAAGGTCTGGGCTCGA 59.451 52.381 0.00 0.00 0.00 4.04
755 2973 1.550976 AGTTTCTAAGGTCTGGGCTCG 59.449 52.381 0.00 0.00 0.00 5.03
757 2975 2.040412 CCAAGTTTCTAAGGTCTGGGCT 59.960 50.000 0.00 0.00 0.00 5.19
758 2976 2.224793 ACCAAGTTTCTAAGGTCTGGGC 60.225 50.000 0.00 0.00 0.00 5.36
759 2977 3.412386 CACCAAGTTTCTAAGGTCTGGG 58.588 50.000 0.00 0.00 30.44 4.45
760 2978 3.181443 ACCACCAAGTTTCTAAGGTCTGG 60.181 47.826 0.00 0.00 30.44 3.86
761 2979 4.086706 ACCACCAAGTTTCTAAGGTCTG 57.913 45.455 0.00 0.00 30.44 3.51
762 2980 4.790718 AACCACCAAGTTTCTAAGGTCT 57.209 40.909 0.00 0.00 30.44 3.85
771 2989 6.607019 TCTATTACCAGAAACCACCAAGTTT 58.393 36.000 0.00 0.00 42.56 2.66
772 2990 6.195600 TCTATTACCAGAAACCACCAAGTT 57.804 37.500 0.00 0.00 0.00 2.66
774 2992 7.414098 CGATTTCTATTACCAGAAACCACCAAG 60.414 40.741 0.67 0.00 44.92 3.61
777 2995 5.296035 CCGATTTCTATTACCAGAAACCACC 59.704 44.000 0.67 0.00 44.92 4.61
778 2996 6.110707 TCCGATTTCTATTACCAGAAACCAC 58.889 40.000 0.67 0.00 44.92 4.16
779 2997 6.155565 TCTCCGATTTCTATTACCAGAAACCA 59.844 38.462 0.67 0.00 44.92 3.67
780 2998 6.579865 TCTCCGATTTCTATTACCAGAAACC 58.420 40.000 0.67 0.00 44.92 3.27
781 2999 6.201234 GCTCTCCGATTTCTATTACCAGAAAC 59.799 42.308 0.67 0.00 44.92 2.78
782 3000 6.127168 TGCTCTCCGATTTCTATTACCAGAAA 60.127 38.462 1.14 1.14 45.86 2.52
783 3001 5.362717 TGCTCTCCGATTTCTATTACCAGAA 59.637 40.000 0.00 0.00 32.71 3.02
784 3002 4.893524 TGCTCTCCGATTTCTATTACCAGA 59.106 41.667 0.00 0.00 0.00 3.86
785 3003 5.201713 TGCTCTCCGATTTCTATTACCAG 57.798 43.478 0.00 0.00 0.00 4.00
786 3004 5.601662 CTTGCTCTCCGATTTCTATTACCA 58.398 41.667 0.00 0.00 0.00 3.25
787 3005 4.449405 GCTTGCTCTCCGATTTCTATTACC 59.551 45.833 0.00 0.00 0.00 2.85
801 3021 6.734104 TTTGATAAAAGAGAGCTTGCTCTC 57.266 37.500 33.23 33.23 44.18 3.20
833 3053 4.039973 GGGGTGTATCGTCAATATCAGGAA 59.960 45.833 0.00 0.00 0.00 3.36
835 3055 3.578716 AGGGGTGTATCGTCAATATCAGG 59.421 47.826 0.00 0.00 0.00 3.86
900 3120 5.247110 GTGAGATAAGATGGAGATAGGGCAA 59.753 44.000 0.00 0.00 0.00 4.52
910 3130 4.164221 GGTTTGGGAGTGAGATAAGATGGA 59.836 45.833 0.00 0.00 0.00 3.41
1317 3538 3.869272 GACTTCTGCCCGCGCATG 61.869 66.667 8.75 0.00 46.11 4.06
1441 3662 6.595326 ACCATGTATGAACAATGTAGACTGTG 59.405 38.462 0.00 0.00 39.58 3.66
1673 3895 2.376518 GGATGGATTGATCAAGCCCCTA 59.623 50.000 33.77 19.77 45.78 3.53
1727 3949 9.866655 AACCATGTAAATCATCATAGGTTGTAT 57.133 29.630 0.00 0.00 35.89 2.29
1729 3951 9.866655 ATAACCATGTAAATCATCATAGGTTGT 57.133 29.630 0.00 0.00 36.79 3.32
1738 3960 8.304596 TCGGTAGAGATAACCATGTAAATCATC 58.695 37.037 0.00 0.00 36.78 2.92
1762 3984 1.797441 CGAGGACACTCTGGTCTCG 59.203 63.158 0.00 0.00 41.71 4.04
1769 3991 2.839486 TTCAAATGCGAGGACACTCT 57.161 45.000 0.00 0.00 41.71 3.24
1880 4102 1.690352 GTTATGCCCCTTAGCCTCGTA 59.310 52.381 0.00 0.00 0.00 3.43
1946 4168 2.323999 TCAAAGTACGGAGGGGGTAA 57.676 50.000 0.00 0.00 0.00 2.85
1949 4171 1.066358 GTCTTCAAAGTACGGAGGGGG 60.066 57.143 0.00 0.00 0.00 5.40
1951 4173 2.299297 ACAGTCTTCAAAGTACGGAGGG 59.701 50.000 0.00 0.00 0.00 4.30
1952 4174 3.662247 ACAGTCTTCAAAGTACGGAGG 57.338 47.619 0.00 0.00 0.00 4.30
1953 4175 5.373981 AGTACAGTCTTCAAAGTACGGAG 57.626 43.478 0.00 0.00 41.16 4.63
1954 4176 5.779529 AAGTACAGTCTTCAAAGTACGGA 57.220 39.130 0.00 0.00 41.16 4.69
1955 4177 5.981315 TGAAAGTACAGTCTTCAAAGTACGG 59.019 40.000 0.00 0.00 41.16 4.02
1956 4178 7.222224 AGTTGAAAGTACAGTCTTCAAAGTACG 59.778 37.037 11.59 0.00 41.16 3.67
1957 4179 8.421673 AGTTGAAAGTACAGTCTTCAAAGTAC 57.578 34.615 11.59 0.00 37.65 2.73
1958 4180 9.444600 AAAGTTGAAAGTACAGTCTTCAAAGTA 57.555 29.630 11.59 0.00 0.00 2.24
1959 4181 7.923414 AAGTTGAAAGTACAGTCTTCAAAGT 57.077 32.000 11.59 3.65 0.00 2.66
1960 4182 8.237267 ACAAAGTTGAAAGTACAGTCTTCAAAG 58.763 33.333 11.59 7.20 0.00 2.77
1961 4183 8.106247 ACAAAGTTGAAAGTACAGTCTTCAAA 57.894 30.769 11.59 0.00 0.00 2.69
1962 4184 7.681939 ACAAAGTTGAAAGTACAGTCTTCAA 57.318 32.000 0.00 2.30 0.00 2.69
1963 4185 7.361713 CCAACAAAGTTGAAAGTACAGTCTTCA 60.362 37.037 11.19 0.00 0.00 3.02
1964 4186 6.967199 CCAACAAAGTTGAAAGTACAGTCTTC 59.033 38.462 11.19 0.00 0.00 2.87
1965 4187 6.657541 TCCAACAAAGTTGAAAGTACAGTCTT 59.342 34.615 11.19 0.00 0.00 3.01
1966 4188 6.177610 TCCAACAAAGTTGAAAGTACAGTCT 58.822 36.000 11.19 0.00 0.00 3.24
1967 4189 6.431198 TCCAACAAAGTTGAAAGTACAGTC 57.569 37.500 11.19 0.00 0.00 3.51
1968 4190 6.827586 TTCCAACAAAGTTGAAAGTACAGT 57.172 33.333 11.19 0.00 0.00 3.55
1969 4191 7.312899 ACTTTCCAACAAAGTTGAAAGTACAG 58.687 34.615 23.17 7.32 39.93 2.74
1970 4192 7.040340 TGACTTTCCAACAAAGTTGAAAGTACA 60.040 33.333 23.79 20.98 41.21 2.90
1971 4193 7.309920 TGACTTTCCAACAAAGTTGAAAGTAC 58.690 34.615 23.79 19.79 41.21 2.73
1972 4194 7.455641 TGACTTTCCAACAAAGTTGAAAGTA 57.544 32.000 23.79 16.20 41.21 2.24
1973 4195 6.339587 TGACTTTCCAACAAAGTTGAAAGT 57.660 33.333 23.88 23.88 43.00 2.66
1974 4196 7.832503 ATTGACTTTCCAACAAAGTTGAAAG 57.167 32.000 20.37 20.37 40.27 2.62
1975 4197 8.614469 AAATTGACTTTCCAACAAAGTTGAAA 57.386 26.923 11.19 8.66 40.27 2.69
1976 4198 8.614469 AAAATTGACTTTCCAACAAAGTTGAA 57.386 26.923 11.19 2.01 40.27 2.69
1977 4199 8.614469 AAAAATTGACTTTCCAACAAAGTTGA 57.386 26.923 11.19 0.00 40.27 3.18
2032 4254 9.985730 CTAATTTGATGGCATAAATATTGGTGT 57.014 29.630 0.00 0.00 0.00 4.16
2033 4255 9.985730 ACTAATTTGATGGCATAAATATTGGTG 57.014 29.630 14.64 0.00 0.00 4.17
2042 4264 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
2043 4265 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
2044 4266 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
2045 4267 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
2046 4268 8.786898 TGAATCTAATGCTACTAATTTGATGGC 58.213 33.333 0.00 0.00 32.33 4.40
2118 4340 9.562583 GACCGAGTTTGTGCAAAAATATATTAA 57.437 29.630 5.11 0.00 31.33 1.40
2119 4341 8.731605 TGACCGAGTTTGTGCAAAAATATATTA 58.268 29.630 5.11 0.00 31.33 0.98
2120 4342 7.598278 TGACCGAGTTTGTGCAAAAATATATT 58.402 30.769 5.11 0.00 31.33 1.28
2121 4343 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
2122 4344 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
2123 4345 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
2124 4346 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
2125 4347 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
2126 4348 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
2127 4349 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
2128 4350 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
2129 4351 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
2130 4352 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
2131 4353 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
2132 4354 5.479716 ACTAAAGTTTGACCGAGTTTGTG 57.520 39.130 0.00 0.00 0.00 3.33
2133 4355 6.505044 AAACTAAAGTTTGACCGAGTTTGT 57.495 33.333 11.03 0.00 45.55 2.83
2146 4368 4.862371 TGTTGGAGGGTCAAACTAAAGTT 58.138 39.130 0.00 0.00 40.50 2.66
2147 4369 4.513406 TGTTGGAGGGTCAAACTAAAGT 57.487 40.909 0.00 0.00 0.00 2.66
2148 4370 5.359860 ACTTTGTTGGAGGGTCAAACTAAAG 59.640 40.000 12.61 12.61 34.37 1.85
2149 4371 5.265989 ACTTTGTTGGAGGGTCAAACTAAA 58.734 37.500 0.00 0.00 0.00 1.85
2150 4372 4.862371 ACTTTGTTGGAGGGTCAAACTAA 58.138 39.130 0.00 0.00 0.00 2.24
2151 4373 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
2152 4374 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
2153 4375 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
2154 4376 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
2155 4377 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
2156 4378 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
2157 4379 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
2162 4384 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
2163 4385 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
2164 4386 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
2165 4387 8.570068 TTAAAGAGTGTACTTCCAACTTTGTT 57.430 30.769 0.00 0.00 31.02 2.83
2166 4388 8.570068 TTTAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 31.02 2.83
2167 4389 8.129211 CCTTTAAAGAGTGTACTTCCAACTTTG 58.871 37.037 16.98 0.00 31.02 2.77
2168 4390 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
2169 4391 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
2170 4392 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
2171 4393 6.073927 CGTCCTTTAAAGAGTGTACTTCCAAC 60.074 42.308 16.98 0.00 0.00 3.77
2172 4394 5.987347 CGTCCTTTAAAGAGTGTACTTCCAA 59.013 40.000 16.98 0.00 0.00 3.53
2173 4395 5.510179 CCGTCCTTTAAAGAGTGTACTTCCA 60.510 44.000 16.98 0.00 0.00 3.53
2174 4396 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
2175 4397 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
2176 4398 5.279356 CCTCCGTCCTTTAAAGAGTGTACTT 60.279 44.000 16.98 0.00 0.00 2.24
2177 4399 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
2178 4400 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
2179 4401 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
2180 4402 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
2181 4403 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
2182 4404 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
2183 4405 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
2184 4406 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
2185 4407 4.502016 GTTACTCCCTCCGTCCTTTAAAG 58.498 47.826 8.32 8.32 0.00 1.85
2186 4408 3.056607 CGTTACTCCCTCCGTCCTTTAAA 60.057 47.826 0.00 0.00 0.00 1.52
2187 4409 2.493278 CGTTACTCCCTCCGTCCTTTAA 59.507 50.000 0.00 0.00 0.00 1.52
2188 4410 2.094675 CGTTACTCCCTCCGTCCTTTA 58.905 52.381 0.00 0.00 0.00 1.85
2189 4411 0.893447 CGTTACTCCCTCCGTCCTTT 59.107 55.000 0.00 0.00 0.00 3.11
2190 4412 0.969409 CCGTTACTCCCTCCGTCCTT 60.969 60.000 0.00 0.00 0.00 3.36
2191 4413 1.379576 CCGTTACTCCCTCCGTCCT 60.380 63.158 0.00 0.00 0.00 3.85
2192 4414 1.253593 AACCGTTACTCCCTCCGTCC 61.254 60.000 0.00 0.00 0.00 4.79
2193 4415 1.403323 CTAACCGTTACTCCCTCCGTC 59.597 57.143 0.00 0.00 0.00 4.79
2194 4416 1.272147 ACTAACCGTTACTCCCTCCGT 60.272 52.381 0.00 0.00 0.00 4.69
2195 4417 1.467920 ACTAACCGTTACTCCCTCCG 58.532 55.000 0.00 0.00 0.00 4.63
2196 4418 2.827921 TCAACTAACCGTTACTCCCTCC 59.172 50.000 0.00 0.00 33.63 4.30
2197 4419 3.256631 TGTCAACTAACCGTTACTCCCTC 59.743 47.826 0.00 0.00 33.63 4.30
2198 4420 3.233507 TGTCAACTAACCGTTACTCCCT 58.766 45.455 0.00 0.00 33.63 4.20
2199 4421 3.665745 TGTCAACTAACCGTTACTCCC 57.334 47.619 0.00 0.00 33.63 4.30
2200 4422 4.813027 TGATGTCAACTAACCGTTACTCC 58.187 43.478 0.00 0.00 33.63 3.85
2201 4423 6.331061 AGATGATGTCAACTAACCGTTACTC 58.669 40.000 0.00 0.00 33.63 2.59
2202 4424 6.282199 AGATGATGTCAACTAACCGTTACT 57.718 37.500 0.00 0.00 33.63 2.24
2203 4425 6.963049 AAGATGATGTCAACTAACCGTTAC 57.037 37.500 0.00 0.00 33.63 2.50
2204 4426 7.876068 AGAAAAGATGATGTCAACTAACCGTTA 59.124 33.333 0.00 0.00 33.63 3.18
2205 4427 6.710744 AGAAAAGATGATGTCAACTAACCGTT 59.289 34.615 0.00 0.00 35.88 4.44
2206 4428 6.231211 AGAAAAGATGATGTCAACTAACCGT 58.769 36.000 0.00 0.00 0.00 4.83
2207 4429 6.727824 AGAAAAGATGATGTCAACTAACCG 57.272 37.500 0.00 0.00 0.00 4.44
2208 4430 8.099364 TCAAGAAAAGATGATGTCAACTAACC 57.901 34.615 0.00 0.00 0.00 2.85
2356 4578 7.414222 AATGACAAAATCAATAGCTGTCCAT 57.586 32.000 0.00 0.00 41.93 3.41
2610 4834 1.001293 TCATGAGCTCTCGCAACTTGT 59.999 47.619 16.19 0.00 39.10 3.16
2682 4906 4.332543 TCGATGCTAAAGGTACAATGCAAG 59.667 41.667 0.00 0.00 34.07 4.01
2690 4914 6.159293 TCATCATCATCGATGCTAAAGGTAC 58.841 40.000 20.81 0.00 42.15 3.34
2730 4957 2.939103 CAGCTGGAGTACAATAAGGCAC 59.061 50.000 5.57 0.00 0.00 5.01
2876 5112 7.359262 TGTCCTAGTTGTGTCAAAAATATCG 57.641 36.000 0.00 0.00 0.00 2.92
2897 5133 0.937304 ATCATACGCATGCGGTTGTC 59.063 50.000 39.95 0.00 44.69 3.18
2912 5148 4.849813 TGGAGTTGTCATCCAAGATCAT 57.150 40.909 0.00 0.00 43.87 2.45
3040 5286 3.318839 TGGTTTGCTTGATGTTGAGAAGG 59.681 43.478 0.00 0.00 0.00 3.46
3059 5305 1.318934 AGGGCCCATTTTATCCTGGT 58.681 50.000 27.56 0.00 0.00 4.00
3098 5344 5.189736 TCCATACAAAACAGGCACTCTAGAT 59.810 40.000 0.00 0.00 34.60 1.98
3107 5353 1.818674 CCCAGTCCATACAAAACAGGC 59.181 52.381 0.00 0.00 0.00 4.85
3129 5375 7.706607 TGACTTGGTTCAGTATCTAATGAATCG 59.293 37.037 3.72 0.00 42.47 3.34
3184 5430 3.737559 TGGCACCTAGGAATGACATTT 57.262 42.857 17.98 0.00 0.00 2.32
3210 5456 6.097412 AGCTTTATTTCCTCTTATGCTTTGGG 59.903 38.462 0.00 0.00 0.00 4.12
3228 5474 3.961408 ACAGGACCATACTCGAGCTTTAT 59.039 43.478 13.61 0.00 0.00 1.40
3264 5510 7.032580 GCGACATATGTTCTAGCTATCAGAAT 58.967 38.462 10.30 0.00 34.67 2.40
3265 5511 6.207614 AGCGACATATGTTCTAGCTATCAGAA 59.792 38.462 20.03 0.00 0.00 3.02
3267 5513 5.948588 AGCGACATATGTTCTAGCTATCAG 58.051 41.667 20.03 0.00 0.00 2.90
3268 5514 5.966742 AGCGACATATGTTCTAGCTATCA 57.033 39.130 20.03 0.00 0.00 2.15
3269 5515 6.382608 TGAAGCGACATATGTTCTAGCTATC 58.617 40.000 21.03 19.29 32.75 2.08
3271 5517 5.767816 TGAAGCGACATATGTTCTAGCTA 57.232 39.130 21.03 10.24 32.75 3.32
3272 5518 4.655762 TGAAGCGACATATGTTCTAGCT 57.344 40.909 10.30 14.87 34.70 3.32
3274 5520 5.261370 GCATGAAGCGACATATGTTCTAG 57.739 43.478 10.30 3.77 0.00 2.43
3301 5563 5.300969 ACATGACTGTAATGTGCATGAAC 57.699 39.130 10.02 0.00 38.82 3.18
3316 5578 4.402829 ACGATGATAGCTAGGACATGACT 58.597 43.478 13.13 0.00 0.00 3.41
3334 5596 3.080765 TGTGGGATGGCCGACGAT 61.081 61.111 0.00 0.00 45.01 3.73
3336 5598 3.094062 ATCTGTGGGATGGCCGACG 62.094 63.158 0.00 0.00 45.01 5.12
3338 5600 2.910360 CATCTGTGGGATGGCCGA 59.090 61.111 0.00 0.00 45.85 5.54
3375 5638 8.036273 AGAAAAATAAATGGCAGCAAATTCAG 57.964 30.769 0.00 0.00 0.00 3.02
3379 5642 6.716173 ACCAAGAAAAATAAATGGCAGCAAAT 59.284 30.769 0.00 0.00 34.45 2.32
3409 5672 2.611292 GGCAAGTGACTACTGATGCATC 59.389 50.000 20.14 20.14 40.70 3.91
3410 5673 2.026915 TGGCAAGTGACTACTGATGCAT 60.027 45.455 0.00 0.00 40.70 3.96
3418 5681 4.278419 AGTTTTTGGATGGCAAGTGACTAC 59.722 41.667 0.00 0.00 0.00 2.73
3443 5706 1.043022 ACCGACGTGTTTAGAGGGTT 58.957 50.000 0.00 0.00 0.00 4.11
3445 5708 3.629398 AGTATACCGACGTGTTTAGAGGG 59.371 47.826 0.00 0.00 0.00 4.30
3448 5711 7.139896 TGTAAAGTATACCGACGTGTTTAGA 57.860 36.000 0.00 0.00 0.00 2.10
3449 5712 7.795431 TTGTAAAGTATACCGACGTGTTTAG 57.205 36.000 0.00 0.00 0.00 1.85
3450 5713 9.502145 CTATTGTAAAGTATACCGACGTGTTTA 57.498 33.333 0.00 0.00 0.00 2.01
3451 5714 8.243426 TCTATTGTAAAGTATACCGACGTGTTT 58.757 33.333 0.00 0.00 0.00 2.83
3452 5715 7.761409 TCTATTGTAAAGTATACCGACGTGTT 58.239 34.615 0.00 0.00 0.00 3.32
3476 5741 1.208052 TGGCTGCTGGTGAGAGTAATC 59.792 52.381 0.00 0.00 0.00 1.75
3540 5805 4.041691 AGTCACAGGTGCTTATAAGTTGGT 59.958 41.667 13.91 3.57 0.00 3.67
3556 5821 2.364632 TGGGTGTTTGTTCAGTCACAG 58.635 47.619 0.00 0.00 33.17 3.66
3567 5832 7.378181 AGCTGTAAGATAAAAATGGGTGTTTG 58.622 34.615 0.00 0.00 34.07 2.93
3753 6104 3.496675 GGGGAGCCCTGATACAAAC 57.503 57.895 5.38 0.00 41.34 2.93
3831 6193 5.049198 TCGCAAATAGCAGATGAAATCCATC 60.049 40.000 0.00 0.00 46.13 3.51
3849 6211 5.777802 ACCATACAAAATGACATTCGCAAA 58.222 33.333 0.05 0.00 0.00 3.68
3853 6215 6.640499 ACACAAACCATACAAAATGACATTCG 59.360 34.615 0.05 0.00 0.00 3.34
4024 6386 1.250840 GCCATTTCTTCCGCTTGGGT 61.251 55.000 0.00 0.00 37.00 4.51
4383 6746 6.705825 AGCTTTGTGTTATGAACCAAAATTCC 59.294 34.615 0.00 0.00 33.95 3.01
4459 6822 9.311916 GCAAGTGGCACATGATTTATTTATTTA 57.688 29.630 25.46 0.00 44.52 1.40
4627 7068 3.144506 CAGTGTTTCTCCTTGCATGAGT 58.855 45.455 12.09 0.00 0.00 3.41
4628 7069 3.058432 CACAGTGTTTCTCCTTGCATGAG 60.058 47.826 0.00 4.33 0.00 2.90
4925 7366 1.066143 ACACGCAACCTTAGGATGAGG 60.066 52.381 12.87 5.69 40.24 3.86
4985 7426 8.319146 CCCTCTGTAAAGAAATACAAGACCTTA 58.681 37.037 0.00 0.00 35.48 2.69
4994 7517 9.099454 CAACATACTCCCTCTGTAAAGAAATAC 57.901 37.037 0.00 0.00 0.00 1.89
5060 7583 3.716353 TCATATTTTGCAGAGCCCCTAGA 59.284 43.478 0.00 0.00 0.00 2.43
5064 7587 1.959282 CCTCATATTTTGCAGAGCCCC 59.041 52.381 0.00 0.00 0.00 5.80
5090 7632 7.824289 CCATACTACCAGATCAAGTCAAAAGAA 59.176 37.037 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.