Multiple sequence alignment - TraesCS4D01G240700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G240700 chr4D 100.000 4762 0 0 1 4762 403144755 403149516 0.000000e+00 8794.0
1 TraesCS4D01G240700 chr4D 90.845 142 13 0 3615 3756 22947019 22946878 1.750000e-44 191.0
2 TraesCS4D01G240700 chr4D 86.709 158 19 2 3453 3609 22947268 22947112 1.760000e-39 174.0
3 TraesCS4D01G240700 chr4A 85.862 1839 122 75 2870 4615 60670033 60671826 0.000000e+00 1829.0
4 TraesCS4D01G240700 chr4A 83.318 1061 77 36 113 1144 60667351 60668340 0.000000e+00 887.0
5 TraesCS4D01G240700 chr4A 88.375 757 53 19 1189 1921 60668325 60669070 0.000000e+00 878.0
6 TraesCS4D01G240700 chr4A 90.909 495 31 8 1993 2486 602454130 602454611 0.000000e+00 652.0
7 TraesCS4D01G240700 chr4A 88.844 493 38 5 1993 2485 60669107 60669582 1.480000e-164 590.0
8 TraesCS4D01G240700 chr4A 91.429 350 16 8 2138 2486 78527745 78528081 7.220000e-128 468.0
9 TraesCS4D01G240700 chr4A 93.060 317 12 5 2570 2876 60669687 60670003 5.620000e-124 455.0
10 TraesCS4D01G240700 chr4A 91.336 277 21 3 2565 2839 602454715 602454990 4.500000e-100 375.0
11 TraesCS4D01G240700 chr4A 90.975 277 22 3 2565 2839 78528185 78528460 2.090000e-98 370.0
12 TraesCS4D01G240700 chr4A 86.913 298 16 12 1636 1923 602453813 602454097 3.580000e-81 313.0
13 TraesCS4D01G240700 chr4A 86.709 158 19 2 3453 3609 579430514 579430670 1.760000e-39 174.0
14 TraesCS4D01G240700 chr4A 88.028 142 17 0 3615 3756 579430781 579430922 8.200000e-38 169.0
15 TraesCS4D01G240700 chr4B 84.835 1820 106 72 2892 4602 499900623 499902381 0.000000e+00 1676.0
16 TraesCS4D01G240700 chr4B 90.444 879 51 12 1993 2870 499899658 499900504 0.000000e+00 1127.0
17 TraesCS4D01G240700 chr4B 88.667 750 35 20 1184 1921 499898911 499899622 0.000000e+00 869.0
18 TraesCS4D01G240700 chr4B 90.782 358 21 6 794 1149 499898586 499898933 7.220000e-128 468.0
19 TraesCS4D01G240700 chr4B 91.234 308 23 4 2565 2870 590972639 590972944 2.650000e-112 416.0
20 TraesCS4D01G240700 chr4B 85.606 132 7 3 4612 4740 499902429 499902551 1.390000e-25 128.0
21 TraesCS4D01G240700 chr7D 91.498 494 29 6 1993 2486 592377226 592377706 0.000000e+00 667.0
22 TraesCS4D01G240700 chr7D 90.447 492 32 5 1995 2486 371382528 371383004 6.720000e-178 634.0
23 TraesCS4D01G240700 chr7D 91.232 422 24 4 2065 2486 584430348 584430756 3.220000e-156 562.0
24 TraesCS4D01G240700 chr2D 91.313 495 29 5 1993 2486 638528762 638529243 0.000000e+00 664.0
25 TraesCS4D01G240700 chr2D 91.232 422 23 5 2065 2486 500208901 500208494 3.220000e-156 562.0
26 TraesCS4D01G240700 chr2D 91.857 307 23 2 2565 2870 638529347 638529652 1.220000e-115 427.0
27 TraesCS4D01G240700 chr2D 87.205 297 16 10 1635 1922 638528444 638528727 7.690000e-83 318.0
28 TraesCS4D01G240700 chr2A 90.505 495 33 9 1993 2486 657883247 657883728 4.020000e-180 641.0
29 TraesCS4D01G240700 chr2A 88.294 299 14 13 1635 1923 657882928 657883215 5.900000e-89 339.0
30 TraesCS4D01G240700 chr2A 97.143 35 1 0 367 401 717937987 717937953 5.150000e-05 60.2
31 TraesCS4D01G240700 chrUn 90.505 495 31 9 1993 2485 16239350 16238870 1.450000e-179 640.0
32 TraesCS4D01G240700 chrUn 90.968 310 25 3 2565 2873 16238768 16238461 9.530000e-112 414.0
33 TraesCS4D01G240700 chrUn 85.479 303 18 15 1631 1922 16239672 16239385 4.660000e-75 292.0
34 TraesCS4D01G240700 chrUn 88.889 45 5 0 362 406 94175771 94175815 6.660000e-04 56.5
35 TraesCS4D01G240700 chr6B 90.081 494 36 4 1993 2486 245115160 245114680 3.130000e-176 628.0
36 TraesCS4D01G240700 chr6B 90.675 311 26 3 2565 2873 517991659 517991350 1.230000e-110 411.0
37 TraesCS4D01G240700 chr6B 82.143 168 22 5 3453 3616 577184685 577184522 2.310000e-28 137.0
38 TraesCS4D01G240700 chr6B 89.899 99 10 0 1520 1618 577186467 577186369 1.390000e-25 128.0
39 TraesCS4D01G240700 chr5B 89.676 494 37 4 1993 2486 481736463 481736942 6.770000e-173 617.0
40 TraesCS4D01G240700 chr3D 90.995 422 24 5 2065 2486 577670780 577670373 1.500000e-154 556.0
41 TraesCS4D01G240700 chr2B 90.635 299 26 2 2571 2868 325885333 325885036 3.450000e-106 396.0
42 TraesCS4D01G240700 chr7B 87.625 299 14 11 1635 1923 16885289 16885574 4.600000e-85 326.0
43 TraesCS4D01G240700 chr3B 87.333 300 15 12 1635 1923 412291978 412292265 5.940000e-84 322.0
44 TraesCS4D01G240700 chr5A 86.174 311 20 13 1635 1935 525542508 525542211 9.950000e-82 315.0
45 TraesCS4D01G240700 chr5A 80.112 357 46 21 2870 3216 557715491 557715832 4.760000e-60 243.0
46 TraesCS4D01G240700 chr6D 80.168 358 44 20 2870 3216 167990963 167991304 4.760000e-60 243.0
47 TraesCS4D01G240700 chr6D 80.170 353 43 20 2870 3211 168004618 168004954 6.160000e-59 239.0
48 TraesCS4D01G240700 chr6D 90.909 99 9 0 1520 1618 386293250 386293152 2.990000e-27 134.0
49 TraesCS4D01G240700 chr6D 81.548 168 23 5 3453 3616 386291562 386291399 1.080000e-26 132.0
50 TraesCS4D01G240700 chr6A 81.437 167 25 3 3453 3616 531395162 531394999 1.080000e-26 132.0
51 TraesCS4D01G240700 chr6A 88.889 99 11 0 1520 1618 531397007 531396909 6.470000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G240700 chr4D 403144755 403149516 4761 False 8794.000000 8794 100.000000 1 4762 1 chr4D.!!$F1 4761
1 TraesCS4D01G240700 chr4A 60667351 60671826 4475 False 927.800000 1829 87.891800 113 4615 5 chr4A.!!$F1 4502
2 TraesCS4D01G240700 chr4A 602453813 602454990 1177 False 446.666667 652 89.719333 1636 2839 3 chr4A.!!$F4 1203
3 TraesCS4D01G240700 chr4A 78527745 78528460 715 False 419.000000 468 91.202000 2138 2839 2 chr4A.!!$F2 701
4 TraesCS4D01G240700 chr4B 499898586 499902551 3965 False 853.600000 1676 88.066800 794 4740 5 chr4B.!!$F2 3946
5 TraesCS4D01G240700 chr2D 638528444 638529652 1208 False 469.666667 664 90.125000 1635 2870 3 chr2D.!!$F1 1235
6 TraesCS4D01G240700 chr2A 657882928 657883728 800 False 490.000000 641 89.399500 1635 2486 2 chr2A.!!$F1 851
7 TraesCS4D01G240700 chrUn 16238461 16239672 1211 True 448.666667 640 88.984000 1631 2873 3 chrUn.!!$R1 1242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 447 0.112412 TGGGTGAGCTTTTTCCTCCC 59.888 55.0 3.17 3.17 33.58 4.30 F
431 448 0.405973 GGGTGAGCTTTTTCCTCCCT 59.594 55.0 2.94 0.00 31.66 4.20 F
1122 1151 0.467804 GCTTCCCATCTCCTCCTGAC 59.532 60.0 0.00 0.00 0.00 3.51 F
1259 1288 0.835276 TCTGCACCCATGATCTCTGG 59.165 55.0 0.00 7.66 0.00 3.86 F
2384 2444 1.158007 AAGGTGTTCCAATCCCCACT 58.842 50.0 0.00 0.00 35.89 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1397 0.401738 TCCTCCAACCCTGAGCAAAG 59.598 55.000 0.00 0.00 0.00 2.77 R
2426 2486 0.689055 ATGTCTCCTCAGCTGCAACA 59.311 50.000 9.47 8.70 0.00 3.33 R
3016 3241 2.736995 GCCTTGTAGTGCGCGTCA 60.737 61.111 8.43 3.08 0.00 4.35 R
3181 3434 1.347707 GGAACTCCCACTGTCATGTCA 59.652 52.381 0.00 0.00 34.14 3.58 R
3811 4094 0.671251 ATTCATCGTCGCCCTCTCTC 59.329 55.000 0.00 0.00 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.157940 GCCAGCATGAATAGAGAATAGGA 57.842 43.478 0.00 0.00 39.69 2.94
23 24 5.177326 GCCAGCATGAATAGAGAATAGGAG 58.823 45.833 0.00 0.00 39.69 3.69
24 25 5.732633 CCAGCATGAATAGAGAATAGGAGG 58.267 45.833 0.00 0.00 39.69 4.30
25 26 5.177326 CAGCATGAATAGAGAATAGGAGGC 58.823 45.833 0.00 0.00 39.69 4.70
26 27 4.224818 AGCATGAATAGAGAATAGGAGGCC 59.775 45.833 0.00 0.00 0.00 5.19
27 28 4.753233 CATGAATAGAGAATAGGAGGCCG 58.247 47.826 0.00 0.00 0.00 6.13
28 29 4.114015 TGAATAGAGAATAGGAGGCCGA 57.886 45.455 0.00 0.00 0.00 5.54
29 30 4.082845 TGAATAGAGAATAGGAGGCCGAG 58.917 47.826 0.00 0.00 0.00 4.63
30 31 1.912417 TAGAGAATAGGAGGCCGAGC 58.088 55.000 0.00 0.00 0.00 5.03
63 64 4.660938 GCCACCACCTCCACCACC 62.661 72.222 0.00 0.00 0.00 4.61
64 65 3.174987 CCACCACCTCCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
65 66 2.538141 CCACCACCTCCACCACCAT 61.538 63.158 0.00 0.00 0.00 3.55
66 67 1.002134 CACCACCTCCACCACCATC 60.002 63.158 0.00 0.00 0.00 3.51
67 68 2.268920 CCACCTCCACCACCATCG 59.731 66.667 0.00 0.00 0.00 3.84
68 69 2.436646 CACCTCCACCACCATCGC 60.437 66.667 0.00 0.00 0.00 4.58
69 70 3.717294 ACCTCCACCACCATCGCC 61.717 66.667 0.00 0.00 0.00 5.54
70 71 3.716195 CCTCCACCACCATCGCCA 61.716 66.667 0.00 0.00 0.00 5.69
71 72 2.436646 CTCCACCACCATCGCCAC 60.437 66.667 0.00 0.00 0.00 5.01
72 73 4.386951 TCCACCACCATCGCCACG 62.387 66.667 0.00 0.00 0.00 4.94
77 78 4.758251 CACCATCGCCACGGCAGA 62.758 66.667 9.11 6.95 42.06 4.26
78 79 4.457496 ACCATCGCCACGGCAGAG 62.457 66.667 9.11 0.00 42.06 3.35
79 80 4.147449 CCATCGCCACGGCAGAGA 62.147 66.667 9.11 0.00 42.06 3.10
80 81 2.887568 CATCGCCACGGCAGAGAC 60.888 66.667 9.11 0.00 42.06 3.36
81 82 4.498520 ATCGCCACGGCAGAGACG 62.499 66.667 9.11 0.00 42.06 4.18
91 92 3.680786 CAGAGACGGCCACCACGA 61.681 66.667 2.24 0.00 34.93 4.35
92 93 3.681835 AGAGACGGCCACCACGAC 61.682 66.667 2.24 0.00 34.93 4.34
93 94 4.736896 GAGACGGCCACCACGACC 62.737 72.222 2.24 0.00 34.93 4.79
102 103 2.836360 ACCACGACCGGTGTCACT 60.836 61.111 14.63 0.00 45.52 3.41
103 104 2.049433 CCACGACCGGTGTCACTC 60.049 66.667 14.63 0.00 45.52 3.51
104 105 2.725641 CACGACCGGTGTCACTCA 59.274 61.111 14.63 0.00 41.85 3.41
105 106 1.289066 CACGACCGGTGTCACTCAT 59.711 57.895 14.63 0.00 41.85 2.90
106 107 1.008875 CACGACCGGTGTCACTCATG 61.009 60.000 14.63 0.00 41.85 3.07
107 108 1.176619 ACGACCGGTGTCACTCATGA 61.177 55.000 14.63 0.00 41.85 3.07
119 120 1.376424 CTCATGACACTTGCCGCCT 60.376 57.895 0.00 0.00 0.00 5.52
121 122 2.360350 ATGACACTTGCCGCCTGG 60.360 61.111 0.00 0.00 38.77 4.45
131 132 2.269241 CCGCCTGGAGGGAAAGAC 59.731 66.667 8.83 0.00 37.49 3.01
132 133 2.269241 CGCCTGGAGGGAAAGACC 59.731 66.667 0.00 0.00 37.23 3.85
134 135 2.990479 CCTGGAGGGAAAGACCGG 59.010 66.667 0.00 0.00 40.11 5.28
166 167 2.742372 CTTCCCAGGCGAACACCG 60.742 66.667 0.00 0.00 42.21 4.94
209 210 4.275508 AGCAGCCACCACACCTGG 62.276 66.667 0.00 0.00 44.26 4.45
218 219 2.561956 CCACACCTGGTCGTCGTCT 61.562 63.158 0.00 0.00 32.03 4.18
222 223 0.939577 CACCTGGTCGTCGTCTTGTG 60.940 60.000 0.00 0.00 0.00 3.33
310 311 2.182030 GACGAAGAGTCCCTGCCG 59.818 66.667 0.00 0.00 43.95 5.69
339 346 4.214327 GCTTCGCCTAGCCTCGCT 62.214 66.667 0.00 0.00 43.41 4.93
344 351 2.203509 GCCTAGCCTCGCTCCCTA 60.204 66.667 0.00 0.00 40.44 3.53
421 438 2.936032 GGAGGGGTGGGTGAGCTT 60.936 66.667 0.00 0.00 0.00 3.74
425 442 0.178961 AGGGGTGGGTGAGCTTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
430 447 0.112412 TGGGTGAGCTTTTTCCTCCC 59.888 55.000 3.17 3.17 33.58 4.30
431 448 0.405973 GGGTGAGCTTTTTCCTCCCT 59.594 55.000 2.94 0.00 31.66 4.20
473 490 0.806102 CACCACGGCTGATCCTAACG 60.806 60.000 0.00 0.00 0.00 3.18
538 555 3.689649 CACGGCCTCAAAACTTAAGCTAT 59.310 43.478 0.00 0.00 0.00 2.97
544 561 5.566627 GCCTCAAAACTTAAGCTATTTGCCA 60.567 40.000 17.59 6.96 44.23 4.92
553 576 7.895759 ACTTAAGCTATTTGCCATCTCAAAAA 58.104 30.769 1.29 0.00 44.23 1.94
588 611 3.388024 TCTGCTCAGGTCAACTTACAACT 59.612 43.478 0.00 0.00 0.00 3.16
600 623 3.986277 ACTTACAACTACGGTCTGGTTG 58.014 45.455 15.15 15.15 43.84 3.77
673 696 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
674 697 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
675 698 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
676 699 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
677 700 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
678 701 2.675844 ACACACACACACACACACATAC 59.324 45.455 0.00 0.00 0.00 2.39
679 702 2.675348 CACACACACACACACACATACA 59.325 45.455 0.00 0.00 0.00 2.29
680 703 2.675844 ACACACACACACACACATACAC 59.324 45.455 0.00 0.00 0.00 2.90
779 804 3.643763 GTCGCAAAACAAGAGAGAGAGA 58.356 45.455 0.00 0.00 0.00 3.10
780 805 3.672867 GTCGCAAAACAAGAGAGAGAGAG 59.327 47.826 0.00 0.00 0.00 3.20
821 846 6.853872 TGAAACAGAAAAACGAATCAATACGG 59.146 34.615 0.00 0.00 0.00 4.02
829 854 2.276201 CGAATCAATACGGGCAGTTGA 58.724 47.619 0.00 0.00 36.42 3.18
843 868 3.251972 GGCAGTTGAGAAGAGAAACTTGG 59.748 47.826 0.00 0.00 39.13 3.61
948 973 5.011227 CACACCTCATCTCATCTCATCTCAT 59.989 44.000 0.00 0.00 0.00 2.90
949 974 5.244402 ACACCTCATCTCATCTCATCTCATC 59.756 44.000 0.00 0.00 0.00 2.92
950 975 5.244178 CACCTCATCTCATCTCATCTCATCA 59.756 44.000 0.00 0.00 0.00 3.07
952 977 6.153851 ACCTCATCTCATCTCATCTCATCATC 59.846 42.308 0.00 0.00 0.00 2.92
953 978 6.197364 TCATCTCATCTCATCTCATCATCG 57.803 41.667 0.00 0.00 0.00 3.84
954 979 5.711036 TCATCTCATCTCATCTCATCATCGT 59.289 40.000 0.00 0.00 0.00 3.73
955 980 5.625921 TCTCATCTCATCTCATCATCGTC 57.374 43.478 0.00 0.00 0.00 4.20
956 981 5.315348 TCTCATCTCATCTCATCATCGTCT 58.685 41.667 0.00 0.00 0.00 4.18
957 982 5.769162 TCTCATCTCATCTCATCATCGTCTT 59.231 40.000 0.00 0.00 0.00 3.01
962 987 1.414158 TCTCATCATCGTCTTCCCCC 58.586 55.000 0.00 0.00 0.00 5.40
989 1014 1.482593 CATTCCCTCCTTGCGAGTAGT 59.517 52.381 0.00 0.00 36.82 2.73
1122 1151 0.467804 GCTTCCCATCTCCTCCTGAC 59.532 60.000 0.00 0.00 0.00 3.51
1127 1156 2.043227 CCCATCTCCTCCTGACCTTAC 58.957 57.143 0.00 0.00 0.00 2.34
1145 1174 7.052142 ACCTTACGAAGAAGAAGAAGAAGAA 57.948 36.000 0.00 0.00 0.00 2.52
1146 1175 7.149307 ACCTTACGAAGAAGAAGAAGAAGAAG 58.851 38.462 0.00 0.00 0.00 2.85
1147 1176 7.014422 ACCTTACGAAGAAGAAGAAGAAGAAGA 59.986 37.037 0.00 0.00 0.00 2.87
1148 1177 7.868415 CCTTACGAAGAAGAAGAAGAAGAAGAA 59.132 37.037 0.00 0.00 0.00 2.52
1149 1178 8.804688 TTACGAAGAAGAAGAAGAAGAAGAAG 57.195 34.615 0.00 0.00 0.00 2.85
1150 1179 7.045126 ACGAAGAAGAAGAAGAAGAAGAAGA 57.955 36.000 0.00 0.00 0.00 2.87
1151 1180 7.493367 ACGAAGAAGAAGAAGAAGAAGAAGAA 58.507 34.615 0.00 0.00 0.00 2.52
1152 1181 7.651704 ACGAAGAAGAAGAAGAAGAAGAAGAAG 59.348 37.037 0.00 0.00 0.00 2.85
1153 1182 7.865385 CGAAGAAGAAGAAGAAGAAGAAGAAGA 59.135 37.037 0.00 0.00 0.00 2.87
1154 1183 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1155 1184 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1156 1185 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1157 1186 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1158 1187 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1159 1188 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1160 1189 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1161 1190 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1162 1191 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1163 1192 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1164 1193 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1165 1194 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1166 1195 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1167 1196 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1168 1197 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1169 1198 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1170 1199 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1171 1200 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1172 1201 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1173 1202 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1174 1203 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1175 1204 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1176 1205 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1177 1206 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1178 1207 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1179 1208 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1180 1209 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1181 1210 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1182 1211 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1183 1212 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1184 1213 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1185 1214 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1186 1215 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1187 1216 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1188 1217 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1189 1218 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1190 1219 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1191 1220 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1192 1221 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1193 1222 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1194 1223 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1195 1224 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1196 1225 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1197 1226 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1198 1227 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1199 1228 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1200 1229 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1201 1230 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1202 1231 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1215 1244 8.406730 AGAAGAAGAAGAAGAAATTCTGCAAT 57.593 30.769 3.48 0.00 37.10 3.56
1256 1285 2.928334 ACATTCTGCACCCATGATCTC 58.072 47.619 0.00 0.00 0.00 2.75
1258 1287 2.704464 TTCTGCACCCATGATCTCTG 57.296 50.000 0.00 0.00 0.00 3.35
1259 1288 0.835276 TCTGCACCCATGATCTCTGG 59.165 55.000 0.00 7.66 0.00 3.86
1357 1397 7.530010 TCATCTCTAATAAGTGCTTTGTTTGC 58.470 34.615 0.00 0.00 0.00 3.68
1431 1471 3.681855 CGTACACATACCTCTCAACTCG 58.318 50.000 0.00 0.00 0.00 4.18
1433 1473 2.171840 ACACATACCTCTCAACTCGCT 58.828 47.619 0.00 0.00 0.00 4.93
1487 1527 9.376075 CTAGCTGAATCTCACTGAAATTTTCTA 57.624 33.333 10.33 0.00 0.00 2.10
1621 1662 3.303263 GCGAAGTCATCCTCTAGTACGAC 60.303 52.174 0.00 0.00 0.00 4.34
1789 1844 4.157289 CCTCCTTGTAAGTCGTTGCTACTA 59.843 45.833 0.00 0.00 0.00 1.82
1790 1845 5.051891 TCCTTGTAAGTCGTTGCTACTAC 57.948 43.478 0.00 0.00 0.00 2.73
1791 1846 4.763793 TCCTTGTAAGTCGTTGCTACTACT 59.236 41.667 0.00 0.00 32.16 2.57
1823 1878 8.987890 TCTTCCTTGTTTCTTTCAAACTTTTTG 58.012 29.630 0.00 0.00 0.00 2.44
1831 1886 5.486526 TCTTTCAAACTTTTTGTGCACCAT 58.513 33.333 15.69 0.00 0.00 3.55
1874 1929 6.352516 AGTAGGAAAAGTAAGATGCAGATGG 58.647 40.000 0.00 0.00 0.00 3.51
1875 1930 4.530875 AGGAAAAGTAAGATGCAGATGGG 58.469 43.478 0.00 0.00 0.00 4.00
1876 1931 3.067320 GGAAAAGTAAGATGCAGATGGGC 59.933 47.826 0.00 0.00 0.00 5.36
1923 1981 4.486125 AAACATTGTTTTCTGGGCACTT 57.514 36.364 8.97 0.00 0.00 3.16
1924 1982 4.486125 AACATTGTTTTCTGGGCACTTT 57.514 36.364 0.00 0.00 0.00 2.66
1927 1985 5.356426 ACATTGTTTTCTGGGCACTTTTAC 58.644 37.500 0.00 0.00 0.00 2.01
1928 1986 3.701532 TGTTTTCTGGGCACTTTTACG 57.298 42.857 0.00 0.00 0.00 3.18
1935 1993 5.172460 TCTGGGCACTTTTACGTTTTAAC 57.828 39.130 0.00 0.00 0.00 2.01
1936 1994 4.036616 TCTGGGCACTTTTACGTTTTAACC 59.963 41.667 0.00 0.00 0.00 2.85
1937 1995 3.952967 TGGGCACTTTTACGTTTTAACCT 59.047 39.130 0.00 0.00 0.00 3.50
1939 1997 4.741185 GGGCACTTTTACGTTTTAACCTTG 59.259 41.667 0.00 0.00 0.00 3.61
1940 1998 5.342433 GGCACTTTTACGTTTTAACCTTGT 58.658 37.500 0.00 0.00 0.00 3.16
1941 1999 5.456497 GGCACTTTTACGTTTTAACCTTGTC 59.544 40.000 0.00 0.00 0.00 3.18
1944 2002 7.253519 GCACTTTTACGTTTTAACCTTGTCAAG 60.254 37.037 5.53 5.53 0.00 3.02
1946 2004 8.680001 ACTTTTACGTTTTAACCTTGTCAAGAT 58.320 29.630 14.42 5.25 0.00 2.40
1948 2006 9.934190 TTTTACGTTTTAACCTTGTCAAGATAC 57.066 29.630 14.42 0.00 0.00 2.24
1949 2007 8.891671 TTACGTTTTAACCTTGTCAAGATACT 57.108 30.769 14.42 0.00 0.00 2.12
1953 2011 9.755064 CGTTTTAACCTTGTCAAGATACTATTG 57.245 33.333 14.42 0.00 0.00 1.90
1959 2017 8.788325 ACCTTGTCAAGATACTATTGTTTACC 57.212 34.615 14.42 0.00 0.00 2.85
1960 2018 7.548075 ACCTTGTCAAGATACTATTGTTTACCG 59.452 37.037 14.42 0.00 0.00 4.02
1961 2019 7.548075 CCTTGTCAAGATACTATTGTTTACCGT 59.452 37.037 14.42 0.00 0.00 4.83
1962 2020 8.470040 TTGTCAAGATACTATTGTTTACCGTC 57.530 34.615 0.00 0.00 0.00 4.79
1963 2021 6.748658 TGTCAAGATACTATTGTTTACCGTCG 59.251 38.462 0.00 0.00 0.00 5.12
1964 2022 5.745294 TCAAGATACTATTGTTTACCGTCGC 59.255 40.000 0.00 0.00 0.00 5.19
1965 2023 5.252969 AGATACTATTGTTTACCGTCGCA 57.747 39.130 0.00 0.00 0.00 5.10
1966 2024 5.653507 AGATACTATTGTTTACCGTCGCAA 58.346 37.500 0.00 0.00 0.00 4.85
1967 2025 6.101332 AGATACTATTGTTTACCGTCGCAAA 58.899 36.000 0.00 0.00 0.00 3.68
1968 2026 6.591062 AGATACTATTGTTTACCGTCGCAAAA 59.409 34.615 0.00 0.00 0.00 2.44
1969 2027 5.616488 ACTATTGTTTACCGTCGCAAAAT 57.384 34.783 0.00 0.00 0.00 1.82
1970 2028 6.004408 ACTATTGTTTACCGTCGCAAAATT 57.996 33.333 0.00 0.00 0.00 1.82
1971 2029 7.131498 ACTATTGTTTACCGTCGCAAAATTA 57.869 32.000 0.00 0.00 0.00 1.40
1972 2030 7.754625 ACTATTGTTTACCGTCGCAAAATTAT 58.245 30.769 0.00 0.00 0.00 1.28
1973 2031 8.881743 ACTATTGTTTACCGTCGCAAAATTATA 58.118 29.630 0.00 0.00 0.00 0.98
1974 2032 7.958112 ATTGTTTACCGTCGCAAAATTATAC 57.042 32.000 0.00 0.00 0.00 1.47
1975 2033 5.867166 TGTTTACCGTCGCAAAATTATACC 58.133 37.500 0.00 0.00 0.00 2.73
1976 2034 4.775440 TTACCGTCGCAAAATTATACCG 57.225 40.909 0.00 0.00 0.00 4.02
1977 2035 2.620242 ACCGTCGCAAAATTATACCGT 58.380 42.857 0.00 0.00 0.00 4.83
1978 2036 3.002102 ACCGTCGCAAAATTATACCGTT 58.998 40.909 0.00 0.00 0.00 4.44
1979 2037 3.181518 ACCGTCGCAAAATTATACCGTTG 60.182 43.478 0.00 0.00 0.00 4.10
1980 2038 2.774074 CGTCGCAAAATTATACCGTTGC 59.226 45.455 1.04 1.04 42.29 4.17
1981 2039 3.484557 CGTCGCAAAATTATACCGTTGCT 60.485 43.478 8.26 0.00 43.28 3.91
1982 2040 4.259890 CGTCGCAAAATTATACCGTTGCTA 60.260 41.667 8.26 0.00 43.28 3.49
1983 2041 5.561993 GTCGCAAAATTATACCGTTGCTAA 58.438 37.500 8.26 0.00 43.28 3.09
1984 2042 6.196571 GTCGCAAAATTATACCGTTGCTAAT 58.803 36.000 8.26 0.00 43.28 1.73
1985 2043 6.689669 GTCGCAAAATTATACCGTTGCTAATT 59.310 34.615 8.26 0.00 43.28 1.40
1986 2044 7.851963 GTCGCAAAATTATACCGTTGCTAATTA 59.148 33.333 8.26 0.00 43.28 1.40
1987 2045 8.561212 TCGCAAAATTATACCGTTGCTAATTAT 58.439 29.630 8.26 0.00 43.28 1.28
1988 2046 8.837059 CGCAAAATTATACCGTTGCTAATTATC 58.163 33.333 8.26 0.00 43.28 1.75
1989 2047 9.672086 GCAAAATTATACCGTTGCTAATTATCA 57.328 29.630 3.56 0.00 42.41 2.15
2003 2061 8.317776 TGCTAATTATCAGGGGCTTAATTTTT 57.682 30.769 0.00 0.00 30.44 1.94
2062 2120 5.356751 GCTTGGACATATGTGTGATTTGGTA 59.643 40.000 14.43 0.00 39.09 3.25
2080 2138 2.683362 GGTAGACAAAATAGCCAGGTGC 59.317 50.000 0.00 0.00 41.71 5.01
2105 2163 2.022238 GCCCTGCTGTATAAACACCCC 61.022 57.143 0.00 0.00 0.00 4.95
2116 2174 4.901197 ATAAACACCCCAAAATTCCACC 57.099 40.909 0.00 0.00 0.00 4.61
2194 2252 3.018423 ACTTGGCCTTTCAGAAACAGT 57.982 42.857 3.32 0.00 0.00 3.55
2290 2349 4.765339 GGCCAAGTTTCTACTGTATTTGGT 59.235 41.667 0.00 0.00 32.29 3.67
2318 2377 5.961272 AGTCGTTGGTTTGTTGATCTTTTT 58.039 33.333 0.00 0.00 0.00 1.94
2384 2444 1.158007 AAGGTGTTCCAATCCCCACT 58.842 50.000 0.00 0.00 35.89 4.00
2426 2486 3.347216 CAAGATCTTCAACACCCCGAAT 58.653 45.455 4.57 0.00 0.00 3.34
2579 2694 9.433153 CACACATATATACTCTCTTTGCATCAT 57.567 33.333 0.00 0.00 0.00 2.45
2630 2746 8.240682 TGTAAAATTCATGTTCCTGGAATTACG 58.759 33.333 13.07 2.37 39.58 3.18
2732 2860 6.742109 TGTATCCTTATCTGCTTACGGTTAC 58.258 40.000 0.00 0.00 0.00 2.50
2773 2901 2.714250 TCTGAACCCAAACAGGTATGGT 59.286 45.455 0.00 0.00 40.05 3.55
2776 2904 4.850680 TGAACCCAAACAGGTATGGTATC 58.149 43.478 0.00 0.00 40.05 2.24
2876 3015 7.950512 TCAGGCAAGAAAATTCTCAACAAATA 58.049 30.769 0.00 0.00 36.28 1.40
2879 3018 7.332678 AGGCAAGAAAATTCTCAACAAATATGC 59.667 33.333 0.00 0.00 36.28 3.14
2881 3020 8.378421 GCAAGAAAATTCTCAACAAATATGCTC 58.622 33.333 0.00 0.00 36.28 4.26
2885 3024 9.630098 GAAAATTCTCAACAAATATGCTCTTGA 57.370 29.630 0.00 0.00 0.00 3.02
2886 3025 9.985730 AAAATTCTCAACAAATATGCTCTTGAA 57.014 25.926 0.00 0.00 0.00 2.69
2887 3026 8.976986 AATTCTCAACAAATATGCTCTTGAAC 57.023 30.769 0.00 0.00 0.00 3.18
2888 3027 7.750229 TTCTCAACAAATATGCTCTTGAACT 57.250 32.000 0.00 0.00 0.00 3.01
2889 3028 8.846943 TTCTCAACAAATATGCTCTTGAACTA 57.153 30.769 0.00 0.00 0.00 2.24
2915 3139 4.916041 ATTGTCCAGAATCCACTGAAGA 57.084 40.909 0.00 0.00 39.94 2.87
2919 3143 5.272402 TGTCCAGAATCCACTGAAGATAGA 58.728 41.667 0.00 0.00 39.94 1.98
2920 3144 5.901853 TGTCCAGAATCCACTGAAGATAGAT 59.098 40.000 0.00 0.00 39.94 1.98
2921 3145 7.069344 TGTCCAGAATCCACTGAAGATAGATA 58.931 38.462 0.00 0.00 39.94 1.98
2922 3146 7.232330 TGTCCAGAATCCACTGAAGATAGATAG 59.768 40.741 0.00 0.00 39.94 2.08
2923 3147 7.450014 GTCCAGAATCCACTGAAGATAGATAGA 59.550 40.741 0.00 0.00 39.94 1.98
2951 3176 6.479660 GGTTTTTCATCATGTTGATTGTGTGT 59.520 34.615 7.29 0.00 34.28 3.72
2968 3193 1.544246 GTGTATTTTGTGCAGGGACCC 59.456 52.381 0.59 0.59 0.00 4.46
2980 3205 2.412112 GGACCCTACTACTGCGCG 59.588 66.667 0.00 0.00 0.00 6.86
3016 3241 2.025418 GTTCGGGCGTGACATCGTT 61.025 57.895 0.00 0.00 0.00 3.85
3022 3247 2.386491 CGTGACATCGTTGACGCG 59.614 61.111 15.14 15.14 42.89 6.01
3129 3354 5.049828 CCAACAACAATTTGGTTTCTCTCC 58.950 41.667 0.78 0.00 39.03 3.71
3139 3364 4.982241 TGGTTTCTCTCCTGTCAGAAAT 57.018 40.909 0.00 0.00 40.04 2.17
3161 3410 3.507233 TGCTCATTTGTGAACCTGATTCC 59.493 43.478 0.00 0.00 36.36 3.01
3167 3420 3.634397 TGTGAACCTGATTCCTCATCC 57.366 47.619 0.00 0.00 36.36 3.51
3181 3434 2.172082 CCTCATCCTGGTGACATGACAT 59.828 50.000 0.00 0.00 41.51 3.06
3182 3435 3.203716 CTCATCCTGGTGACATGACATG 58.796 50.000 14.02 14.02 41.51 3.21
3183 3436 2.839425 TCATCCTGGTGACATGACATGA 59.161 45.455 22.19 0.00 41.51 3.07
3184 3437 2.768253 TCCTGGTGACATGACATGAC 57.232 50.000 22.19 16.03 41.51 3.06
3185 3438 1.977129 TCCTGGTGACATGACATGACA 59.023 47.619 22.19 18.49 41.51 3.58
3271 3524 1.655329 GCTACATCCTCGAGGTCCG 59.345 63.158 30.17 20.86 40.25 4.79
3281 3544 1.298413 CGAGGTCCGTGCTGATACG 60.298 63.158 0.00 0.00 43.35 3.06
3286 3549 1.133790 GGTCCGTGCTGATACGTACTT 59.866 52.381 0.00 0.00 42.24 2.24
3287 3550 2.355756 GGTCCGTGCTGATACGTACTTA 59.644 50.000 0.00 0.00 42.24 2.24
3288 3551 3.357897 GTCCGTGCTGATACGTACTTAC 58.642 50.000 0.00 0.00 42.24 2.34
3289 3552 3.064545 GTCCGTGCTGATACGTACTTACT 59.935 47.826 0.00 0.00 42.24 2.24
3290 3553 3.064408 TCCGTGCTGATACGTACTTACTG 59.936 47.826 0.00 0.00 42.24 2.74
3291 3554 3.360533 CGTGCTGATACGTACTTACTGG 58.639 50.000 0.00 0.00 39.13 4.00
3292 3555 3.064408 CGTGCTGATACGTACTTACTGGA 59.936 47.826 0.00 0.00 39.13 3.86
3293 3556 4.349501 GTGCTGATACGTACTTACTGGAC 58.650 47.826 0.00 2.59 0.00 4.02
3305 3568 6.359087 CGTACTTACTGGACTGTATTATTCGC 59.641 42.308 0.00 0.00 0.00 4.70
3306 3569 6.216801 ACTTACTGGACTGTATTATTCGCA 57.783 37.500 0.00 0.00 0.00 5.10
3340 3603 4.116747 ACTGACTGAATCTGGTTCGATC 57.883 45.455 0.00 0.00 39.80 3.69
3341 3604 3.111838 CTGACTGAATCTGGTTCGATCG 58.888 50.000 9.36 9.36 39.80 3.69
3342 3605 2.752903 TGACTGAATCTGGTTCGATCGA 59.247 45.455 15.15 15.15 39.80 3.59
3352 3628 1.261619 GGTTCGATCGATGGTTGATGC 59.738 52.381 20.18 1.33 0.00 3.91
3623 3899 3.850098 CTTCAAGTGGGGCGTGGCT 62.850 63.158 0.00 0.00 0.00 4.75
3766 4049 1.761667 CCCTCCTCCTCTGAGCCAG 60.762 68.421 0.00 0.00 37.29 4.85
3780 4063 1.673337 GCCAGCAGCAGATGACACA 60.673 57.895 0.00 0.00 42.97 3.72
3781 4064 1.919956 GCCAGCAGCAGATGACACAC 61.920 60.000 0.00 0.00 42.97 3.82
3782 4065 1.632948 CCAGCAGCAGATGACACACG 61.633 60.000 0.00 0.00 31.30 4.49
3784 4067 2.319841 GCAGCAGATGACACACGCA 61.320 57.895 0.00 0.00 0.00 5.24
3785 4068 1.494628 CAGCAGATGACACACGCAC 59.505 57.895 0.00 0.00 0.00 5.34
3786 4069 1.069596 AGCAGATGACACACGCACA 59.930 52.632 0.00 0.00 0.00 4.57
3790 4073 2.280119 ATGACACACGCACACGCT 60.280 55.556 0.00 0.00 45.53 5.07
3791 4074 1.831389 GATGACACACGCACACGCTT 61.831 55.000 0.00 0.00 45.53 4.68
3792 4075 1.436195 ATGACACACGCACACGCTTT 61.436 50.000 0.00 0.00 45.53 3.51
3794 4077 1.762222 GACACACGCACACGCTTTCT 61.762 55.000 0.00 0.00 45.53 2.52
3795 4078 1.351707 CACACGCACACGCTTTCTT 59.648 52.632 0.00 0.00 45.53 2.52
3797 4080 1.082756 CACGCACACGCTTTCTTCC 60.083 57.895 0.00 0.00 45.53 3.46
3798 4081 1.227556 ACGCACACGCTTTCTTCCT 60.228 52.632 0.00 0.00 45.53 3.36
3799 4082 1.222115 ACGCACACGCTTTCTTCCTC 61.222 55.000 0.00 0.00 45.53 3.71
3801 4084 1.668919 CGCACACGCTTTCTTCCTCTA 60.669 52.381 0.00 0.00 35.30 2.43
3802 4085 1.727335 GCACACGCTTTCTTCCTCTAC 59.273 52.381 0.00 0.00 34.30 2.59
3804 4087 2.028930 CACACGCTTTCTTCCTCTACCT 60.029 50.000 0.00 0.00 0.00 3.08
3806 4089 1.473278 ACGCTTTCTTCCTCTACCTCG 59.527 52.381 0.00 0.00 0.00 4.63
3807 4090 1.202313 CGCTTTCTTCCTCTACCTCGG 60.202 57.143 0.00 0.00 0.00 4.63
3810 4093 3.358118 CTTTCTTCCTCTACCTCGGAGT 58.642 50.000 4.02 0.00 0.00 3.85
3811 4094 2.421751 TCTTCCTCTACCTCGGAGTG 57.578 55.000 4.02 0.00 0.00 3.51
3812 4095 1.914108 TCTTCCTCTACCTCGGAGTGA 59.086 52.381 4.02 0.00 0.00 3.41
3813 4096 2.092861 TCTTCCTCTACCTCGGAGTGAG 60.093 54.545 4.02 8.27 44.83 3.51
3822 4119 2.438614 CGGAGTGAGAGAGGGCGA 60.439 66.667 0.00 0.00 0.00 5.54
3827 4124 1.064946 GTGAGAGAGGGCGACGATG 59.935 63.158 0.00 0.00 0.00 3.84
3828 4125 1.077716 TGAGAGAGGGCGACGATGA 60.078 57.895 0.00 0.00 0.00 2.92
3832 4129 1.482593 AGAGAGGGCGACGATGAATTT 59.517 47.619 0.00 0.00 0.00 1.82
3833 4130 1.861575 GAGAGGGCGACGATGAATTTC 59.138 52.381 0.00 0.00 0.00 2.17
3848 4145 6.397894 CGATGAATTTCTTTCTGCAAAACGTC 60.398 38.462 0.00 0.00 35.23 4.34
3851 4148 3.963383 TTCTTTCTGCAAAACGTCTCC 57.037 42.857 0.00 0.00 0.00 3.71
3892 4190 2.160205 GGTCTAGTCTGTTTTTGGGGC 58.840 52.381 0.00 0.00 0.00 5.80
3893 4191 1.804748 GTCTAGTCTGTTTTTGGGGCG 59.195 52.381 0.00 0.00 0.00 6.13
3894 4192 1.418637 TCTAGTCTGTTTTTGGGGCGT 59.581 47.619 0.00 0.00 0.00 5.68
3895 4193 1.535462 CTAGTCTGTTTTTGGGGCGTG 59.465 52.381 0.00 0.00 0.00 5.34
3896 4194 1.299850 GTCTGTTTTTGGGGCGTGC 60.300 57.895 0.00 0.00 0.00 5.34
3897 4195 2.028925 CTGTTTTTGGGGCGTGCC 59.971 61.111 1.16 1.16 0.00 5.01
3898 4196 2.443016 TGTTTTTGGGGCGTGCCT 60.443 55.556 11.25 0.00 36.10 4.75
3899 4197 2.026945 CTGTTTTTGGGGCGTGCCTT 62.027 55.000 11.25 0.00 36.10 4.35
3900 4198 1.145156 GTTTTTGGGGCGTGCCTTT 59.855 52.632 11.25 0.00 36.10 3.11
3938 4251 5.570234 ACTCGTTCAGATAAGAGTCTTCC 57.430 43.478 9.12 2.88 39.49 3.46
3960 4273 7.591006 TCCGTGTACTCTGAAAATAATGTTC 57.409 36.000 0.00 0.00 0.00 3.18
3961 4274 7.383687 TCCGTGTACTCTGAAAATAATGTTCT 58.616 34.615 0.00 0.00 0.00 3.01
3962 4275 7.876068 TCCGTGTACTCTGAAAATAATGTTCTT 59.124 33.333 0.00 0.00 0.00 2.52
3963 4276 8.169268 CCGTGTACTCTGAAAATAATGTTCTTC 58.831 37.037 0.00 0.00 0.00 2.87
4027 4343 4.192429 TCTGTTCGATCACATGTCATGT 57.808 40.909 12.87 12.87 46.22 3.21
4028 4344 5.323371 TCTGTTCGATCACATGTCATGTA 57.677 39.130 18.00 7.68 42.70 2.29
4029 4345 5.343249 TCTGTTCGATCACATGTCATGTAG 58.657 41.667 18.00 12.36 42.70 2.74
4030 4346 5.125417 TCTGTTCGATCACATGTCATGTAGA 59.875 40.000 18.00 16.64 42.70 2.59
4031 4347 5.343249 TGTTCGATCACATGTCATGTAGAG 58.657 41.667 18.00 6.78 42.70 2.43
4032 4348 5.105756 TGTTCGATCACATGTCATGTAGAGT 60.106 40.000 18.00 4.93 42.70 3.24
4033 4349 5.582689 TCGATCACATGTCATGTAGAGTT 57.417 39.130 18.00 2.03 42.70 3.01
4034 4350 5.582550 TCGATCACATGTCATGTAGAGTTC 58.417 41.667 18.00 9.65 42.70 3.01
4035 4351 5.125417 TCGATCACATGTCATGTAGAGTTCA 59.875 40.000 18.00 0.00 42.70 3.18
4047 4363 8.191446 GTCATGTAGAGTTCACATACAGTACAT 58.809 37.037 0.00 0.00 34.88 2.29
4110 4452 2.796383 CGAACAAAATTGACGTTGGCCA 60.796 45.455 0.00 0.00 0.00 5.36
4123 4465 0.322816 TTGGCCATGCTCTGTCCTTC 60.323 55.000 6.09 0.00 0.00 3.46
4145 4487 2.562738 TCCGTCTCTCTGCATTTTGAGA 59.437 45.455 3.63 3.63 37.69 3.27
4255 4614 1.334992 ACGCGACAACTCGACGAATG 61.335 55.000 15.93 3.87 43.06 2.67
4260 4619 3.422655 CGACAACTCGACGAATGTGATA 58.577 45.455 17.66 0.00 43.06 2.15
4261 4620 3.237660 CGACAACTCGACGAATGTGATAC 59.762 47.826 17.66 5.59 43.06 2.24
4262 4621 4.413087 GACAACTCGACGAATGTGATACT 58.587 43.478 17.66 0.00 0.00 2.12
4263 4622 5.556355 ACAACTCGACGAATGTGATACTA 57.444 39.130 13.39 0.00 0.00 1.82
4279 4638 4.345257 TGATACTATCTGGCCCTCTTTGAC 59.655 45.833 0.00 0.00 0.00 3.18
4300 4677 0.320050 TTGGGCCATTCTTTTTCCGC 59.680 50.000 7.26 0.00 0.00 5.54
4305 4682 0.732538 CCATTCTTTTTCCGCACGCC 60.733 55.000 0.00 0.00 0.00 5.68
4373 4750 2.882137 GTTTCATGGACGGAACAAGGAA 59.118 45.455 0.00 0.00 0.00 3.36
4415 4792 2.022195 GATCTGCGGGTAGTGACACTA 58.978 52.381 11.37 11.37 0.00 2.74
4418 4795 1.749063 CTGCGGGTAGTGACACTATGA 59.251 52.381 18.05 0.00 32.65 2.15
4469 4854 0.915364 AGGGAGGAGAAATGCTCACC 59.085 55.000 0.00 0.00 45.81 4.02
4479 4864 4.273257 TGCTCACCGCACGTCGAA 62.273 61.111 0.00 0.00 45.47 3.71
4488 4873 0.914996 CGCACGTCGAAATTGATCGC 60.915 55.000 0.00 0.00 42.44 4.58
4506 4891 4.380841 TCGCTACATCGACCAAAGTTAT 57.619 40.909 0.00 0.00 33.02 1.89
4507 4892 4.751060 TCGCTACATCGACCAAAGTTATT 58.249 39.130 0.00 0.00 33.02 1.40
4538 4923 2.435372 GGTCCTGCACCATTGGATTA 57.565 50.000 10.37 0.00 45.98 1.75
4622 5045 7.875327 ACTACTACTGTGAACCAAAATTGTT 57.125 32.000 0.00 0.00 0.00 2.83
4675 5101 1.194547 GCAGATCAAACAGCGAAACGA 59.805 47.619 0.00 0.00 0.00 3.85
4692 5118 0.673644 CGATTCAGCAGAACCCGGTT 60.674 55.000 1.22 1.22 36.39 4.44
4693 5119 0.804989 GATTCAGCAGAACCCGGTTG 59.195 55.000 7.78 0.00 36.39 3.77
4694 5120 1.244019 ATTCAGCAGAACCCGGTTGC 61.244 55.000 7.78 6.85 36.39 4.17
4696 5122 2.032681 AGCAGAACCCGGTTGCTC 59.967 61.111 7.78 0.00 44.35 4.26
4697 5123 2.281484 GCAGAACCCGGTTGCTCA 60.281 61.111 7.78 0.00 35.05 4.26
4698 5124 2.328099 GCAGAACCCGGTTGCTCAG 61.328 63.158 7.78 0.00 35.05 3.35
4699 5125 1.071471 CAGAACCCGGTTGCTCAGT 59.929 57.895 7.78 0.00 0.00 3.41
4700 5126 1.071471 AGAACCCGGTTGCTCAGTG 59.929 57.895 7.78 0.00 0.00 3.66
4708 5134 1.370064 GTTGCTCAGTGTACCCCGT 59.630 57.895 0.00 0.00 0.00 5.28
4725 5151 1.080025 GTCGGGTCAGGACGGAAAG 60.080 63.158 0.00 0.00 0.00 2.62
4740 5166 3.268023 GGAAAGACCGATCAAGATGGT 57.732 47.619 0.00 4.55 39.12 3.55
4741 5167 4.402056 GGAAAGACCGATCAAGATGGTA 57.598 45.455 0.00 0.00 35.75 3.25
4742 5168 4.766375 GGAAAGACCGATCAAGATGGTAA 58.234 43.478 0.00 0.00 35.75 2.85
4743 5169 4.811557 GGAAAGACCGATCAAGATGGTAAG 59.188 45.833 0.00 0.00 35.75 2.34
4744 5170 4.408182 AAGACCGATCAAGATGGTAAGG 57.592 45.455 0.00 0.00 35.75 2.69
4745 5171 2.103263 AGACCGATCAAGATGGTAAGGC 59.897 50.000 0.00 0.00 35.75 4.35
4746 5172 1.141053 ACCGATCAAGATGGTAAGGCC 59.859 52.381 0.00 0.00 33.25 5.19
4747 5173 1.502231 CGATCAAGATGGTAAGGCCG 58.498 55.000 0.00 0.00 41.21 6.13
4748 5174 1.230324 GATCAAGATGGTAAGGCCGC 58.770 55.000 0.00 0.00 41.21 6.53
4749 5175 0.532862 ATCAAGATGGTAAGGCCGCG 60.533 55.000 0.00 0.00 41.21 6.46
4750 5176 1.449601 CAAGATGGTAAGGCCGCGT 60.450 57.895 4.92 0.00 41.21 6.01
4751 5177 1.024579 CAAGATGGTAAGGCCGCGTT 61.025 55.000 4.92 3.47 41.21 4.84
4752 5178 0.743345 AAGATGGTAAGGCCGCGTTC 60.743 55.000 4.92 0.00 41.21 3.95
4753 5179 2.510691 ATGGTAAGGCCGCGTTCG 60.511 61.111 4.92 0.00 41.21 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.157940 TCCTATTCTCTATTCATGCTGGC 57.842 43.478 0.00 0.00 0.00 4.85
1 2 5.732633 CCTCCTATTCTCTATTCATGCTGG 58.267 45.833 0.00 0.00 0.00 4.85
3 4 4.224818 GGCCTCCTATTCTCTATTCATGCT 59.775 45.833 0.00 0.00 0.00 3.79
5 6 4.464244 TCGGCCTCCTATTCTCTATTCATG 59.536 45.833 0.00 0.00 0.00 3.07
7 8 4.082845 CTCGGCCTCCTATTCTCTATTCA 58.917 47.826 0.00 0.00 0.00 2.57
8 9 3.119280 GCTCGGCCTCCTATTCTCTATTC 60.119 52.174 0.00 0.00 0.00 1.75
9 10 2.829120 GCTCGGCCTCCTATTCTCTATT 59.171 50.000 0.00 0.00 0.00 1.73
10 11 2.452505 GCTCGGCCTCCTATTCTCTAT 58.547 52.381 0.00 0.00 0.00 1.98
11 12 1.548128 GGCTCGGCCTCCTATTCTCTA 60.548 57.143 0.00 0.00 46.69 2.43
12 13 0.830023 GGCTCGGCCTCCTATTCTCT 60.830 60.000 0.00 0.00 46.69 3.10
13 14 1.668867 GGCTCGGCCTCCTATTCTC 59.331 63.158 0.00 0.00 46.69 2.87
14 15 3.878358 GGCTCGGCCTCCTATTCT 58.122 61.111 0.00 0.00 46.69 2.40
46 47 4.660938 GGTGGTGGAGGTGGTGGC 62.661 72.222 0.00 0.00 0.00 5.01
47 48 2.484287 GATGGTGGTGGAGGTGGTGG 62.484 65.000 0.00 0.00 0.00 4.61
48 49 1.002134 GATGGTGGTGGAGGTGGTG 60.002 63.158 0.00 0.00 0.00 4.17
49 50 2.592993 CGATGGTGGTGGAGGTGGT 61.593 63.158 0.00 0.00 0.00 4.16
50 51 2.268920 CGATGGTGGTGGAGGTGG 59.731 66.667 0.00 0.00 0.00 4.61
51 52 2.436646 GCGATGGTGGTGGAGGTG 60.437 66.667 0.00 0.00 0.00 4.00
52 53 3.717294 GGCGATGGTGGTGGAGGT 61.717 66.667 0.00 0.00 0.00 3.85
53 54 3.716195 TGGCGATGGTGGTGGAGG 61.716 66.667 0.00 0.00 0.00 4.30
54 55 2.436646 GTGGCGATGGTGGTGGAG 60.437 66.667 0.00 0.00 0.00 3.86
55 56 4.386951 CGTGGCGATGGTGGTGGA 62.387 66.667 0.00 0.00 0.00 4.02
60 61 4.758251 TCTGCCGTGGCGATGGTG 62.758 66.667 8.91 2.66 45.51 4.17
61 62 4.457496 CTCTGCCGTGGCGATGGT 62.457 66.667 8.91 0.00 45.51 3.55
62 63 4.147449 TCTCTGCCGTGGCGATGG 62.147 66.667 6.37 1.93 45.51 3.51
63 64 2.887568 GTCTCTGCCGTGGCGATG 60.888 66.667 6.37 0.00 45.51 3.84
64 65 4.498520 CGTCTCTGCCGTGGCGAT 62.499 66.667 6.37 0.00 45.51 4.58
74 75 3.680786 TCGTGGTGGCCGTCTCTG 61.681 66.667 0.00 0.00 0.00 3.35
75 76 3.681835 GTCGTGGTGGCCGTCTCT 61.682 66.667 0.00 0.00 0.00 3.10
76 77 4.736896 GGTCGTGGTGGCCGTCTC 62.737 72.222 0.00 0.00 0.00 3.36
98 99 0.950555 GCGGCAAGTGTCATGAGTGA 60.951 55.000 0.00 0.00 0.00 3.41
99 100 1.499056 GCGGCAAGTGTCATGAGTG 59.501 57.895 0.00 0.00 0.00 3.51
100 101 1.672356 GGCGGCAAGTGTCATGAGT 60.672 57.895 3.07 0.00 0.00 3.41
101 102 1.376424 AGGCGGCAAGTGTCATGAG 60.376 57.895 13.08 0.00 0.00 2.90
102 103 1.672030 CAGGCGGCAAGTGTCATGA 60.672 57.895 13.08 0.00 0.00 3.07
103 104 2.693762 CCAGGCGGCAAGTGTCATG 61.694 63.158 13.08 0.00 0.00 3.07
104 105 2.360350 CCAGGCGGCAAGTGTCAT 60.360 61.111 13.08 0.00 0.00 3.06
105 106 3.535629 CTCCAGGCGGCAAGTGTCA 62.536 63.158 13.08 0.00 0.00 3.58
106 107 2.743928 CTCCAGGCGGCAAGTGTC 60.744 66.667 13.08 0.00 0.00 3.67
107 108 4.335647 CCTCCAGGCGGCAAGTGT 62.336 66.667 13.08 0.00 0.00 3.55
110 111 3.567579 TTTCCCTCCAGGCGGCAAG 62.568 63.158 13.08 5.36 34.51 4.01
111 112 3.567579 CTTTCCCTCCAGGCGGCAA 62.568 63.158 13.08 0.00 34.51 4.52
112 113 4.033776 CTTTCCCTCCAGGCGGCA 62.034 66.667 13.08 0.00 34.51 5.69
113 114 3.717294 TCTTTCCCTCCAGGCGGC 61.717 66.667 0.00 0.00 34.51 6.53
114 115 2.269241 GTCTTTCCCTCCAGGCGG 59.731 66.667 0.00 0.00 34.51 6.13
119 120 3.327404 GGCCGGTCTTTCCCTCCA 61.327 66.667 1.90 0.00 0.00 3.86
191 192 2.670934 CAGGTGTGGTGGCTGCTC 60.671 66.667 0.00 0.00 0.00 4.26
206 207 0.939577 CACCACAAGACGACGACCAG 60.940 60.000 0.00 0.00 0.00 4.00
209 210 2.503256 GTCACCACAAGACGACGAC 58.497 57.895 0.00 0.00 0.00 4.34
281 282 1.444553 CTTCGTCCTCTCACGTGGC 60.445 63.158 17.00 0.00 40.79 5.01
293 294 2.182030 CGGCAGGGACTCTTCGTC 59.818 66.667 0.00 0.00 42.07 4.20
342 349 4.577246 GTCCCTCGCCGCTGCTAG 62.577 72.222 0.00 0.00 34.43 3.42
365 382 4.044484 CCCTAGATCGAGCCGCCG 62.044 72.222 0.00 0.00 0.00 6.46
419 436 5.529581 TGTTTGCTTTAGGGAGGAAAAAG 57.470 39.130 0.00 0.00 38.44 2.27
420 437 5.941555 TTGTTTGCTTTAGGGAGGAAAAA 57.058 34.783 0.00 0.00 38.44 1.94
421 438 5.941555 TTTGTTTGCTTTAGGGAGGAAAA 57.058 34.783 0.00 0.00 38.44 2.29
425 442 5.473039 CAGATTTTGTTTGCTTTAGGGAGG 58.527 41.667 0.00 0.00 0.00 4.30
430 447 6.756074 TGTCAACCAGATTTTGTTTGCTTTAG 59.244 34.615 0.00 0.00 29.97 1.85
431 448 6.533367 GTGTCAACCAGATTTTGTTTGCTTTA 59.467 34.615 0.00 0.00 29.97 1.85
454 471 0.806102 CGTTAGGATCAGCCGTGGTG 60.806 60.000 0.00 0.00 43.43 4.17
500 517 4.407945 AGGCCGTGTAAGAAACATATAGGT 59.592 41.667 0.00 0.00 41.10 3.08
501 518 4.957296 AGGCCGTGTAAGAAACATATAGG 58.043 43.478 0.00 0.00 41.10 2.57
503 520 5.601583 TGAGGCCGTGTAAGAAACATATA 57.398 39.130 0.00 0.00 41.10 0.86
504 521 4.481368 TGAGGCCGTGTAAGAAACATAT 57.519 40.909 0.00 0.00 41.10 1.78
505 522 3.965379 TGAGGCCGTGTAAGAAACATA 57.035 42.857 0.00 0.00 41.10 2.29
515 532 1.607148 GCTTAAGTTTTGAGGCCGTGT 59.393 47.619 4.02 0.00 0.00 4.49
564 587 5.246203 AGTTGTAAGTTGACCTGAGCAGATA 59.754 40.000 0.00 0.00 0.00 1.98
567 590 3.733337 AGTTGTAAGTTGACCTGAGCAG 58.267 45.455 0.00 0.00 0.00 4.24
573 596 3.893813 AGACCGTAGTTGTAAGTTGACCT 59.106 43.478 0.00 0.00 0.00 3.85
580 603 2.735134 GCAACCAGACCGTAGTTGTAAG 59.265 50.000 0.00 0.00 42.25 2.34
588 611 1.300311 CACACGCAACCAGACCGTA 60.300 57.895 0.00 0.00 33.39 4.02
620 643 3.840666 AGAGCCTGAAGTAACCATCTCAA 59.159 43.478 0.00 0.00 0.00 3.02
673 696 1.493022 ACAGGGGTTGTGTGTGTATGT 59.507 47.619 0.00 0.00 38.99 2.29
674 697 2.270352 ACAGGGGTTGTGTGTGTATG 57.730 50.000 0.00 0.00 38.99 2.39
779 804 8.964476 TCTGTTTCAGTTTCAAAAGATACTCT 57.036 30.769 0.00 0.00 32.61 3.24
821 846 3.251972 CCAAGTTTCTCTTCTCAACTGCC 59.748 47.826 0.00 0.00 33.63 4.85
829 854 1.141053 ACGGTGCCAAGTTTCTCTTCT 59.859 47.619 0.00 0.00 33.63 2.85
922 947 1.135721 TGAGATGAGATGAGGTGTGCG 59.864 52.381 0.00 0.00 0.00 5.34
962 987 1.117150 CAAGGAGGGAATGGCAATGG 58.883 55.000 0.00 0.00 0.00 3.16
989 1014 1.751544 CTGGCCATTGCTGCTGCTA 60.752 57.895 17.00 9.75 40.48 3.49
1122 1151 7.371936 TCTTCTTCTTCTTCTTCTTCGTAAGG 58.628 38.462 0.00 0.00 38.47 2.69
1127 1156 7.865385 TCTTCTTCTTCTTCTTCTTCTTCTTCG 59.135 37.037 0.00 0.00 0.00 3.79
1145 1174 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1146 1175 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1147 1176 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1148 1177 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1149 1178 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1150 1179 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1151 1180 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1152 1181 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1153 1182 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1154 1183 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1155 1184 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1156 1185 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1157 1186 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1158 1187 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1159 1188 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1160 1189 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1161 1190 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1162 1191 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1163 1192 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1164 1193 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1165 1194 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1166 1195 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1167 1196 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1168 1197 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1169 1198 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1170 1199 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1171 1200 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1172 1201 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1173 1202 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1174 1203 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1175 1204 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1176 1205 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1177 1206 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1178 1207 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1179 1208 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1180 1209 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
1186 1215 8.567104 GCAGAATTTCTTCTTCTTCTTCTTCTT 58.433 33.333 0.00 0.00 39.78 2.52
1187 1216 7.718753 TGCAGAATTTCTTCTTCTTCTTCTTCT 59.281 33.333 0.00 0.00 39.78 2.85
1188 1217 7.869800 TGCAGAATTTCTTCTTCTTCTTCTTC 58.130 34.615 0.00 0.00 39.78 2.87
1189 1218 7.814264 TGCAGAATTTCTTCTTCTTCTTCTT 57.186 32.000 0.00 0.00 39.78 2.52
1190 1219 7.814264 TTGCAGAATTTCTTCTTCTTCTTCT 57.186 32.000 0.00 0.00 39.78 2.85
1193 1222 8.610896 CGATATTGCAGAATTTCTTCTTCTTCT 58.389 33.333 0.00 0.00 39.78 2.85
1194 1223 7.375544 GCGATATTGCAGAATTTCTTCTTCTTC 59.624 37.037 10.24 0.00 39.78 2.87
1195 1224 7.192232 GCGATATTGCAGAATTTCTTCTTCTT 58.808 34.615 10.24 0.00 39.78 2.52
1196 1225 6.510799 CGCGATATTGCAGAATTTCTTCTTCT 60.511 38.462 15.30 0.00 39.78 2.85
1197 1226 5.618798 CGCGATATTGCAGAATTTCTTCTTC 59.381 40.000 15.30 0.00 39.78 2.87
1198 1227 5.505286 CGCGATATTGCAGAATTTCTTCTT 58.495 37.500 15.30 0.00 39.78 2.52
1199 1228 4.553547 GCGCGATATTGCAGAATTTCTTCT 60.554 41.667 12.10 0.00 42.59 2.85
1200 1229 3.661270 GCGCGATATTGCAGAATTTCTTC 59.339 43.478 12.10 0.00 34.15 2.87
1201 1230 3.548818 GGCGCGATATTGCAGAATTTCTT 60.549 43.478 12.10 0.00 34.15 2.52
1202 1231 2.031682 GGCGCGATATTGCAGAATTTCT 60.032 45.455 12.10 0.00 34.15 2.52
1215 1244 4.460034 TGTAAGTATCATAAGGGCGCGATA 59.540 41.667 12.10 0.00 0.00 2.92
1260 1289 1.673923 GGCAGAAAAATTGGCCAGAGC 60.674 52.381 5.11 2.45 45.70 4.09
1261 1290 2.375173 GGCAGAAAAATTGGCCAGAG 57.625 50.000 5.11 0.00 45.70 3.35
1350 1390 1.484038 ACCCTGAGCAAAGCAAACAA 58.516 45.000 0.00 0.00 0.00 2.83
1357 1397 0.401738 TCCTCCAACCCTGAGCAAAG 59.598 55.000 0.00 0.00 0.00 2.77
1418 1458 2.488545 GAGTTCAGCGAGTTGAGAGGTA 59.511 50.000 0.00 0.00 0.00 3.08
1629 1670 2.483889 CCATTAGAGAAGGCGAGGGAAC 60.484 54.545 0.00 0.00 0.00 3.62
1633 1674 2.990066 AACCATTAGAGAAGGCGAGG 57.010 50.000 0.00 0.00 0.00 4.63
1664 1705 8.025243 TGTAAGCAAACAAGTAATACAGTAGC 57.975 34.615 0.00 0.29 0.00 3.58
1708 1763 1.407989 GGGGGCTTCATCAGAGTCAAG 60.408 57.143 0.00 0.00 0.00 3.02
1894 1951 6.215845 CCCAGAAAACAATGTTTTCCTGTAG 58.784 40.000 34.53 23.17 38.74 2.74
1895 1952 5.452636 GCCCAGAAAACAATGTTTTCCTGTA 60.453 40.000 34.53 0.00 38.74 2.74
1913 1971 4.036616 GGTTAAAACGTAAAAGTGCCCAGA 59.963 41.667 0.00 0.00 0.00 3.86
1923 1981 9.328845 AGTATCTTGACAAGGTTAAAACGTAAA 57.671 29.630 15.13 0.00 0.00 2.01
1924 1982 8.891671 AGTATCTTGACAAGGTTAAAACGTAA 57.108 30.769 15.13 0.00 0.00 3.18
1927 1985 9.755064 CAATAGTATCTTGACAAGGTTAAAACG 57.245 33.333 15.13 0.00 0.00 3.60
1935 1993 7.548075 ACGGTAAACAATAGTATCTTGACAAGG 59.452 37.037 15.13 0.00 0.00 3.61
1936 1994 8.475331 ACGGTAAACAATAGTATCTTGACAAG 57.525 34.615 9.03 9.03 0.00 3.16
1937 1995 7.274033 CGACGGTAAACAATAGTATCTTGACAA 59.726 37.037 0.00 0.00 0.00 3.18
1939 1997 6.291479 GCGACGGTAAACAATAGTATCTTGAC 60.291 42.308 0.00 0.00 0.00 3.18
1940 1998 5.745294 GCGACGGTAAACAATAGTATCTTGA 59.255 40.000 0.00 0.00 0.00 3.02
1941 1999 5.517411 TGCGACGGTAAACAATAGTATCTTG 59.483 40.000 0.00 0.00 0.00 3.02
1944 2002 5.954434 TTGCGACGGTAAACAATAGTATC 57.046 39.130 0.00 0.00 0.00 2.24
1946 2004 6.724694 ATTTTGCGACGGTAAACAATAGTA 57.275 33.333 0.00 0.00 0.00 1.82
1947 2005 5.616488 ATTTTGCGACGGTAAACAATAGT 57.384 34.783 0.00 0.00 0.00 2.12
1948 2006 9.150653 GTATAATTTTGCGACGGTAAACAATAG 57.849 33.333 0.00 0.00 0.00 1.73
1949 2007 8.121708 GGTATAATTTTGCGACGGTAAACAATA 58.878 33.333 0.00 0.00 0.00 1.90
1953 2011 4.957372 CGGTATAATTTTGCGACGGTAAAC 59.043 41.667 0.00 0.00 0.00 2.01
1955 2013 4.180057 ACGGTATAATTTTGCGACGGTAA 58.820 39.130 0.00 0.00 0.00 2.85
1957 2015 2.620242 ACGGTATAATTTTGCGACGGT 58.380 42.857 0.00 0.00 0.00 4.83
1958 2016 3.347443 CAACGGTATAATTTTGCGACGG 58.653 45.455 0.00 0.00 0.00 4.79
1959 2017 2.774074 GCAACGGTATAATTTTGCGACG 59.226 45.455 0.00 0.00 35.41 5.12
1963 2021 9.672086 TGATAATTAGCAACGGTATAATTTTGC 57.328 29.630 0.00 2.69 43.85 3.68
1966 2024 9.010029 CCCTGATAATTAGCAACGGTATAATTT 57.990 33.333 4.76 0.00 32.75 1.82
1967 2025 7.610305 CCCCTGATAATTAGCAACGGTATAATT 59.390 37.037 4.76 7.69 34.42 1.40
1968 2026 7.110155 CCCCTGATAATTAGCAACGGTATAAT 58.890 38.462 4.76 0.00 0.00 1.28
1969 2027 6.469410 CCCCTGATAATTAGCAACGGTATAA 58.531 40.000 4.76 0.00 0.00 0.98
1970 2028 5.570034 GCCCCTGATAATTAGCAACGGTATA 60.570 44.000 14.12 0.00 0.00 1.47
1971 2029 4.806286 GCCCCTGATAATTAGCAACGGTAT 60.806 45.833 14.12 0.00 0.00 2.73
1972 2030 3.495453 GCCCCTGATAATTAGCAACGGTA 60.495 47.826 14.12 0.00 0.00 4.02
1973 2031 2.748465 GCCCCTGATAATTAGCAACGGT 60.748 50.000 14.12 0.00 0.00 4.83
1974 2032 1.880027 GCCCCTGATAATTAGCAACGG 59.120 52.381 4.76 7.93 0.00 4.44
1975 2033 2.851195 AGCCCCTGATAATTAGCAACG 58.149 47.619 4.76 0.00 0.00 4.10
1976 2034 6.901081 ATTAAGCCCCTGATAATTAGCAAC 57.099 37.500 4.76 0.00 0.00 4.17
1977 2035 7.912778 AAATTAAGCCCCTGATAATTAGCAA 57.087 32.000 4.76 0.00 31.03 3.91
1978 2036 7.912778 AAAATTAAGCCCCTGATAATTAGCA 57.087 32.000 2.99 2.99 31.03 3.49
2080 2138 3.081061 TGTTTATACAGCAGGGCACAAG 58.919 45.455 0.00 0.00 0.00 3.16
2105 2163 4.827284 AGTAGGTCAACTGGTGGAATTTTG 59.173 41.667 0.00 0.00 0.00 2.44
2116 2174 2.839486 TGAGCCAAGTAGGTCAACTG 57.161 50.000 0.00 0.00 40.61 3.16
2156 2214 5.266242 CCAAGTTGTTTTTCTGAAGAGACG 58.734 41.667 1.45 0.00 0.00 4.18
2254 2313 3.274095 ACTTGGCCTCTGATTTAGCTC 57.726 47.619 3.32 0.00 0.00 4.09
2290 2349 2.229062 TCAACAAACCAACGACTTTGCA 59.771 40.909 0.00 0.00 33.34 4.08
2322 2381 8.610035 GCACATAACCTACAAGGAGTAATAAAC 58.390 37.037 0.00 0.00 37.67 2.01
2384 2444 1.541147 GCAGCATTGTGCCTCTTGTTA 59.459 47.619 0.00 0.00 46.52 2.41
2426 2486 0.689055 ATGTCTCCTCAGCTGCAACA 59.311 50.000 9.47 8.70 0.00 3.33
2547 2620 9.371136 CAAAGAGAGTATATATGTGTGTGTGTT 57.629 33.333 0.00 0.00 0.00 3.32
2551 2624 8.599055 ATGCAAAGAGAGTATATATGTGTGTG 57.401 34.615 0.00 0.00 0.00 3.82
2568 2683 6.183810 ACTCATCTCCATATGATGCAAAGA 57.816 37.500 3.65 0.00 40.59 2.52
2579 2694 7.004086 ACTTGTTTTTCCAACTCATCTCCATA 58.996 34.615 0.00 0.00 0.00 2.74
2630 2746 9.547753 TCTGTCTGTATCTGCTTAAATAAATCC 57.452 33.333 0.00 0.00 0.00 3.01
2732 2860 3.006323 AGAGATAAGCCTAATCAGTGCCG 59.994 47.826 0.00 0.00 0.00 5.69
2733 2861 4.039730 TCAGAGATAAGCCTAATCAGTGCC 59.960 45.833 0.00 0.00 0.00 5.01
2773 2901 3.468770 GAGAGTGTACTCCTGCTCGATA 58.531 50.000 8.34 0.00 43.88 2.92
2902 3126 9.474313 ACCTATCTATCTATCTTCAGTGGATTC 57.526 37.037 0.00 0.00 0.00 2.52
2921 3145 9.028284 ACAATCAACATGATGAAAAACCTATCT 57.972 29.630 9.94 0.00 37.15 1.98
2922 3146 9.079833 CACAATCAACATGATGAAAAACCTATC 57.920 33.333 9.94 0.00 37.15 2.08
2923 3147 8.587608 ACACAATCAACATGATGAAAAACCTAT 58.412 29.630 9.94 0.00 37.15 2.57
2951 3176 2.916934 AGTAGGGTCCCTGCACAAAATA 59.083 45.455 26.19 0.00 38.73 1.40
2968 3193 4.925576 CCGGCCGCGCAGTAGTAG 62.926 72.222 22.85 0.00 0.00 2.57
3016 3241 2.736995 GCCTTGTAGTGCGCGTCA 60.737 61.111 8.43 3.08 0.00 4.35
3129 3354 5.366829 TCACAAATGAGCATTTCTGACAG 57.633 39.130 9.02 0.00 38.84 3.51
3139 3364 3.507233 GGAATCAGGTTCACAAATGAGCA 59.493 43.478 0.00 0.00 37.78 4.26
3161 3410 3.118519 TCATGTCATGTCACCAGGATGAG 60.119 47.826 12.54 0.00 39.69 2.90
3167 3420 3.373130 GTCATGTCATGTCATGTCACCAG 59.627 47.826 25.46 8.24 43.70 4.00
3181 3434 1.347707 GGAACTCCCACTGTCATGTCA 59.652 52.381 0.00 0.00 34.14 3.58
3182 3435 1.347707 TGGAACTCCCACTGTCATGTC 59.652 52.381 0.00 0.00 40.82 3.06
3183 3436 1.434188 TGGAACTCCCACTGTCATGT 58.566 50.000 0.00 0.00 40.82 3.21
3184 3437 2.224621 ACTTGGAACTCCCACTGTCATG 60.225 50.000 0.00 0.00 46.62 3.07
3185 3438 2.039084 GACTTGGAACTCCCACTGTCAT 59.961 50.000 0.00 0.00 46.62 3.06
3271 3524 4.096081 AGTCCAGTAAGTACGTATCAGCAC 59.904 45.833 0.00 0.00 0.00 4.40
3281 3544 7.167136 GTGCGAATAATACAGTCCAGTAAGTAC 59.833 40.741 0.00 0.00 0.00 2.73
3286 3549 4.647853 AGGTGCGAATAATACAGTCCAGTA 59.352 41.667 0.00 0.00 0.00 2.74
3287 3550 3.451178 AGGTGCGAATAATACAGTCCAGT 59.549 43.478 0.00 0.00 0.00 4.00
3288 3551 4.051922 GAGGTGCGAATAATACAGTCCAG 58.948 47.826 0.00 0.00 0.00 3.86
3289 3552 3.490249 CGAGGTGCGAATAATACAGTCCA 60.490 47.826 0.00 0.00 44.57 4.02
3290 3553 3.050619 CGAGGTGCGAATAATACAGTCC 58.949 50.000 0.00 0.00 44.57 3.85
3291 3554 3.486108 CACGAGGTGCGAATAATACAGTC 59.514 47.826 0.00 0.00 44.57 3.51
3292 3555 3.119245 ACACGAGGTGCGAATAATACAGT 60.119 43.478 0.00 0.00 44.57 3.55
3293 3556 3.444916 ACACGAGGTGCGAATAATACAG 58.555 45.455 0.00 0.00 44.57 2.74
3305 3568 1.299850 TCAGTTGCGACACGAGGTG 60.300 57.895 6.90 0.00 39.75 4.00
3306 3569 1.299926 GTCAGTTGCGACACGAGGT 60.300 57.895 6.90 0.00 35.88 3.85
3340 3603 1.202110 GCAGTTCAGCATCAACCATCG 60.202 52.381 0.00 0.00 0.00 3.84
3341 3604 1.814394 TGCAGTTCAGCATCAACCATC 59.186 47.619 0.00 0.00 40.11 3.51
3342 3605 1.816835 CTGCAGTTCAGCATCAACCAT 59.183 47.619 5.25 0.00 44.68 3.55
3352 3628 1.638133 CGTGATCCTCTGCAGTTCAG 58.362 55.000 14.67 3.55 44.21 3.02
3650 3926 4.415332 TCCTTCTCCGTGTCGCGC 62.415 66.667 0.00 0.00 39.71 6.86
3766 4049 2.319841 TGCGTGTGTCATCTGCTGC 61.320 57.895 0.00 0.00 0.00 5.25
3782 4065 1.727335 GTAGAGGAAGAAAGCGTGTGC 59.273 52.381 0.00 0.00 43.24 4.57
3784 4067 2.231721 GAGGTAGAGGAAGAAAGCGTGT 59.768 50.000 0.00 0.00 0.00 4.49
3785 4068 2.732597 CGAGGTAGAGGAAGAAAGCGTG 60.733 54.545 0.00 0.00 0.00 5.34
3786 4069 1.473278 CGAGGTAGAGGAAGAAAGCGT 59.527 52.381 0.00 0.00 0.00 5.07
3790 4073 3.090037 CACTCCGAGGTAGAGGAAGAAA 58.910 50.000 0.00 0.00 35.90 2.52
3791 4074 2.307980 TCACTCCGAGGTAGAGGAAGAA 59.692 50.000 0.00 0.00 35.90 2.52
3792 4075 1.914108 TCACTCCGAGGTAGAGGAAGA 59.086 52.381 0.00 0.00 35.90 2.87
3794 4077 1.914108 TCTCACTCCGAGGTAGAGGAA 59.086 52.381 12.20 0.00 42.55 3.36
3795 4078 1.487142 CTCTCACTCCGAGGTAGAGGA 59.513 57.143 16.27 0.00 42.55 3.71
3797 4080 2.484770 CCTCTCTCACTCCGAGGTAGAG 60.485 59.091 17.31 17.31 42.55 2.43
3798 4081 1.487142 CCTCTCTCACTCCGAGGTAGA 59.513 57.143 0.00 1.48 42.55 2.59
3799 4082 1.476110 CCCTCTCTCACTCCGAGGTAG 60.476 61.905 0.00 0.00 42.17 3.18
3801 4084 1.304952 CCCTCTCTCACTCCGAGGT 59.695 63.158 0.00 0.00 42.17 3.85
3802 4085 2.124693 GCCCTCTCTCACTCCGAGG 61.125 68.421 0.00 0.00 42.55 4.63
3804 4087 2.438614 CGCCCTCTCTCACTCCGA 60.439 66.667 0.00 0.00 0.00 4.55
3806 4089 2.766400 CGTCGCCCTCTCTCACTCC 61.766 68.421 0.00 0.00 0.00 3.85
3807 4090 1.098712 ATCGTCGCCCTCTCTCACTC 61.099 60.000 0.00 0.00 0.00 3.51
3810 4093 0.679960 TTCATCGTCGCCCTCTCTCA 60.680 55.000 0.00 0.00 0.00 3.27
3811 4094 0.671251 ATTCATCGTCGCCCTCTCTC 59.329 55.000 0.00 0.00 0.00 3.20
3812 4095 1.115467 AATTCATCGTCGCCCTCTCT 58.885 50.000 0.00 0.00 0.00 3.10
3813 4096 1.861575 GAAATTCATCGTCGCCCTCTC 59.138 52.381 0.00 0.00 0.00 3.20
3814 4097 1.482593 AGAAATTCATCGTCGCCCTCT 59.517 47.619 0.00 0.00 0.00 3.69
3820 4117 4.326413 TGCAGAAAGAAATTCATCGTCG 57.674 40.909 0.00 0.00 40.72 5.12
3822 4119 5.399301 CGTTTTGCAGAAAGAAATTCATCGT 59.601 36.000 0.00 0.00 40.72 3.73
3827 4124 5.399596 GGAGACGTTTTGCAGAAAGAAATTC 59.600 40.000 9.81 0.00 38.39 2.17
3828 4125 5.067805 AGGAGACGTTTTGCAGAAAGAAATT 59.932 36.000 9.81 0.00 0.00 1.82
3832 4129 2.872245 CAGGAGACGTTTTGCAGAAAGA 59.128 45.455 9.81 0.00 0.00 2.52
3833 4130 2.614057 ACAGGAGACGTTTTGCAGAAAG 59.386 45.455 1.36 1.36 0.00 2.62
3892 4190 0.934496 TGAAAGACACGAAAGGCACG 59.066 50.000 0.00 0.00 0.00 5.34
3893 4191 2.384899 GTGAAAGACACGAAAGGCAC 57.615 50.000 0.00 0.00 39.78 5.01
3938 4251 8.926710 AGAAGAACATTATTTTCAGAGTACACG 58.073 33.333 0.00 0.00 0.00 4.49
3960 4273 4.875544 TTTATCGGAATGCGGAAAGAAG 57.124 40.909 0.00 0.00 0.00 2.85
3961 4274 4.878971 TCATTTATCGGAATGCGGAAAGAA 59.121 37.500 0.00 0.00 37.03 2.52
3962 4275 4.447290 TCATTTATCGGAATGCGGAAAGA 58.553 39.130 0.00 0.00 37.03 2.52
3963 4276 4.811555 TCATTTATCGGAATGCGGAAAG 57.188 40.909 0.00 0.00 37.03 2.62
4027 4343 7.363530 GGAACCATGTACTGTATGTGAACTCTA 60.364 40.741 0.00 0.00 0.00 2.43
4028 4344 6.360370 AACCATGTACTGTATGTGAACTCT 57.640 37.500 0.00 0.00 0.00 3.24
4029 4345 5.581085 GGAACCATGTACTGTATGTGAACTC 59.419 44.000 0.00 0.00 0.00 3.01
4030 4346 5.012664 TGGAACCATGTACTGTATGTGAACT 59.987 40.000 0.00 0.00 0.00 3.01
4031 4347 5.242434 TGGAACCATGTACTGTATGTGAAC 58.758 41.667 0.00 0.00 0.00 3.18
4032 4348 5.491323 TGGAACCATGTACTGTATGTGAA 57.509 39.130 0.00 0.00 0.00 3.18
4033 4349 5.427378 CATGGAACCATGTACTGTATGTGA 58.573 41.667 21.50 0.00 46.20 3.58
4034 4350 5.739752 CATGGAACCATGTACTGTATGTG 57.260 43.478 21.50 0.00 46.20 3.21
4047 4363 1.545428 GCAGTGGAGAACATGGAACCA 60.545 52.381 0.00 0.00 0.00 3.67
4090 4412 2.815478 TGGCCAACGTCAATTTTGTTC 58.185 42.857 0.61 0.00 0.00 3.18
4110 4452 0.820871 GACGGAGAAGGACAGAGCAT 59.179 55.000 0.00 0.00 0.00 3.79
4123 4465 2.928757 CTCAAAATGCAGAGAGACGGAG 59.071 50.000 0.00 0.00 33.74 4.63
4255 4614 4.345257 TCAAAGAGGGCCAGATAGTATCAC 59.655 45.833 12.66 1.67 0.00 3.06
4260 4619 1.482593 CGTCAAAGAGGGCCAGATAGT 59.517 52.381 6.18 0.00 0.00 2.12
4261 4620 1.482593 ACGTCAAAGAGGGCCAGATAG 59.517 52.381 6.18 0.00 0.00 2.08
4262 4621 1.568504 ACGTCAAAGAGGGCCAGATA 58.431 50.000 6.18 0.00 0.00 1.98
4263 4622 0.693049 AACGTCAAAGAGGGCCAGAT 59.307 50.000 6.18 0.00 0.00 2.90
4279 4638 1.668628 CGGAAAAAGAATGGCCCAACG 60.669 52.381 0.00 0.00 0.00 4.10
4415 4792 2.353505 CGGATGGAGAAGCATCGATCAT 60.354 50.000 0.00 0.00 36.47 2.45
4418 4795 1.271934 CTCGGATGGAGAAGCATCGAT 59.728 52.381 0.00 0.00 46.23 3.59
4469 4854 0.914996 GCGATCAATTTCGACGTGCG 60.915 55.000 0.00 0.00 41.62 5.34
4474 4859 3.729217 TCGATGTAGCGATCAATTTCGAC 59.271 43.478 3.75 0.00 41.62 4.20
4488 4873 4.634004 TGGCAATAACTTTGGTCGATGTAG 59.366 41.667 0.00 0.00 0.00 2.74
4506 4891 0.754957 CAGGACCACCACTTTGGCAA 60.755 55.000 0.00 0.00 42.67 4.52
4507 4892 1.152777 CAGGACCACCACTTTGGCA 60.153 57.895 0.00 0.00 42.67 4.92
4675 5101 1.244019 GCAACCGGGTTCTGCTGAAT 61.244 55.000 10.04 0.00 34.40 2.57
4692 5118 2.632544 CGACGGGGTACACTGAGCA 61.633 63.158 11.94 0.00 0.00 4.26
4693 5119 2.181021 CGACGGGGTACACTGAGC 59.819 66.667 11.94 1.05 0.00 4.26
4694 5120 2.882876 CCGACGGGGTACACTGAG 59.117 66.667 11.94 4.05 0.00 3.35
4708 5134 1.228644 TCTTTCCGTCCTGACCCGA 60.229 57.895 0.00 0.00 0.00 5.14
4720 5146 3.268023 ACCATCTTGATCGGTCTTTCC 57.732 47.619 0.00 0.00 0.00 3.13
4723 5149 3.432326 GCCTTACCATCTTGATCGGTCTT 60.432 47.826 0.00 0.00 34.12 3.01
4725 5151 2.484889 GCCTTACCATCTTGATCGGTC 58.515 52.381 0.00 0.00 34.12 4.79
4731 5157 1.153449 CGCGGCCTTACCATCTTGA 60.153 57.895 0.00 0.00 39.03 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.