Multiple sequence alignment - TraesCS4D01G239600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G239600 chr4D 100.000 4682 0 0 1 4682 401642250 401637569 0.000000e+00 8647
1 TraesCS4D01G239600 chr4B 94.621 3272 119 17 318 3574 497233449 497230220 0.000000e+00 5014
2 TraesCS4D01G239600 chr4B 88.226 603 49 13 4084 4680 497229611 497229025 0.000000e+00 701
3 TraesCS4D01G239600 chr4B 90.816 392 28 5 3591 3977 497230088 497229700 6.940000e-143 518
4 TraesCS4D01G239600 chr4A 94.277 1625 74 11 808 2418 59323875 59322256 0.000000e+00 2468
5 TraesCS4D01G239600 chr4A 91.793 1316 82 13 2474 3775 59322259 59320956 0.000000e+00 1808
6 TraesCS4D01G239600 chr4A 82.015 923 107 42 3773 4667 59320819 59319928 0.000000e+00 730
7 TraesCS4D01G239600 chr4A 85.580 638 37 24 209 819 59325572 59324963 6.660000e-173 617
8 TraesCS4D01G239600 chr7D 88.776 98 9 2 29 126 231583866 231583961 8.230000e-23 119
9 TraesCS4D01G239600 chr7D 88.776 98 9 2 29 126 231584338 231584243 8.230000e-23 119
10 TraesCS4D01G239600 chr7B 88.776 98 9 2 29 126 622430379 622430284 8.230000e-23 119
11 TraesCS4D01G239600 chr5D 88.776 98 9 2 29 126 346433099 346433194 8.230000e-23 119
12 TraesCS4D01G239600 chr5D 88.776 98 9 2 29 126 503257187 503257092 8.230000e-23 119
13 TraesCS4D01G239600 chr3D 88.776 98 9 2 29 126 158941644 158941549 8.230000e-23 119
14 TraesCS4D01G239600 chr3D 88.776 98 9 2 29 126 589252590 589252495 8.230000e-23 119
15 TraesCS4D01G239600 chr2D 88.776 98 9 2 29 126 591993251 591993346 8.230000e-23 119
16 TraesCS4D01G239600 chr6D 88.542 96 9 2 31 126 449386509 449386416 1.060000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G239600 chr4D 401637569 401642250 4681 True 8647.000000 8647 100.00000 1 4682 1 chr4D.!!$R1 4681
1 TraesCS4D01G239600 chr4B 497229025 497233449 4424 True 2077.666667 5014 91.22100 318 4680 3 chr4B.!!$R1 4362
2 TraesCS4D01G239600 chr4A 59319928 59325572 5644 True 1405.750000 2468 88.41625 209 4667 4 chr4A.!!$R1 4458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 359 0.025513 GACAGCAATGACGTCGATGC 59.974 55.0 28.11 28.11 39.06 3.91 F
609 626 1.017177 GTACAGGAAATCGCCGTGCA 61.017 55.0 0.00 0.00 0.00 4.57 F
1473 2623 1.032657 TCTGGAGTAGCTCTCGGTGC 61.033 60.0 0.00 0.00 43.60 5.01 F
3179 4333 1.226746 GACACTCAAACGACCTTGGG 58.773 55.0 0.00 0.00 32.68 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 2523 0.179000 AGGAAAGATGCTCCGCGATT 59.821 50.000 8.23 0.0 38.08 3.34 R
1785 2936 1.134699 TGCCAATAGAACTCGAGGCAG 60.135 52.381 18.41 0.0 46.25 4.85 R
3318 4472 0.252421 TCTGACAGTCCTGCCCTGAT 60.252 55.000 1.59 0.0 34.04 2.90 R
4292 5815 0.034616 ACTCTGAGCACAACTCCTGC 59.965 55.000 4.19 0.0 45.61 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.575244 TCTATGGTGAGGGTGTTATTGATT 57.425 37.500 0.00 0.00 0.00 2.57
24 25 6.356556 TCTATGGTGAGGGTGTTATTGATTG 58.643 40.000 0.00 0.00 0.00 2.67
25 26 4.380843 TGGTGAGGGTGTTATTGATTGT 57.619 40.909 0.00 0.00 0.00 2.71
26 27 4.078537 TGGTGAGGGTGTTATTGATTGTG 58.921 43.478 0.00 0.00 0.00 3.33
27 28 4.202514 TGGTGAGGGTGTTATTGATTGTGA 60.203 41.667 0.00 0.00 0.00 3.58
28 29 4.764823 GGTGAGGGTGTTATTGATTGTGAA 59.235 41.667 0.00 0.00 0.00 3.18
29 30 5.335661 GGTGAGGGTGTTATTGATTGTGAAC 60.336 44.000 0.00 0.00 0.00 3.18
30 31 4.764823 TGAGGGTGTTATTGATTGTGAACC 59.235 41.667 0.00 0.00 0.00 3.62
31 32 4.998051 AGGGTGTTATTGATTGTGAACCT 58.002 39.130 0.00 0.00 0.00 3.50
32 33 5.393866 AGGGTGTTATTGATTGTGAACCTT 58.606 37.500 0.00 0.00 0.00 3.50
33 34 6.548321 AGGGTGTTATTGATTGTGAACCTTA 58.452 36.000 0.00 0.00 0.00 2.69
34 35 7.182060 AGGGTGTTATTGATTGTGAACCTTAT 58.818 34.615 0.00 0.00 0.00 1.73
35 36 7.122650 AGGGTGTTATTGATTGTGAACCTTATG 59.877 37.037 0.00 0.00 0.00 1.90
36 37 6.751888 GGTGTTATTGATTGTGAACCTTATGC 59.248 38.462 0.00 0.00 0.00 3.14
37 38 7.312154 GTGTTATTGATTGTGAACCTTATGCA 58.688 34.615 0.00 0.00 0.00 3.96
38 39 7.812191 GTGTTATTGATTGTGAACCTTATGCAA 59.188 33.333 0.00 0.00 0.00 4.08
39 40 8.028354 TGTTATTGATTGTGAACCTTATGCAAG 58.972 33.333 0.00 0.00 0.00 4.01
40 41 6.839124 ATTGATTGTGAACCTTATGCAAGA 57.161 33.333 0.00 0.00 33.20 3.02
41 42 6.647334 TTGATTGTGAACCTTATGCAAGAA 57.353 33.333 0.00 0.00 33.20 2.52
42 43 6.258230 TGATTGTGAACCTTATGCAAGAAG 57.742 37.500 0.00 0.00 33.20 2.85
44 45 4.365514 TGTGAACCTTATGCAAGAAGGA 57.634 40.909 28.58 10.82 45.52 3.36
45 46 4.922206 TGTGAACCTTATGCAAGAAGGAT 58.078 39.130 28.58 20.67 45.52 3.24
46 47 4.943705 TGTGAACCTTATGCAAGAAGGATC 59.056 41.667 28.58 25.87 45.52 3.36
47 48 4.336713 GTGAACCTTATGCAAGAAGGATCC 59.663 45.833 28.58 18.54 45.52 3.36
48 49 4.018506 TGAACCTTATGCAAGAAGGATCCA 60.019 41.667 28.58 20.53 45.52 3.41
49 50 4.162040 ACCTTATGCAAGAAGGATCCAG 57.838 45.455 28.58 8.96 45.52 3.86
50 51 3.782523 ACCTTATGCAAGAAGGATCCAGA 59.217 43.478 28.58 0.00 45.52 3.86
51 52 4.141528 ACCTTATGCAAGAAGGATCCAGAG 60.142 45.833 28.58 7.83 45.52 3.35
52 53 4.102210 CCTTATGCAAGAAGGATCCAGAGA 59.898 45.833 20.99 0.00 45.52 3.10
53 54 3.842007 ATGCAAGAAGGATCCAGAGAG 57.158 47.619 15.82 1.67 0.00 3.20
54 55 2.825223 TGCAAGAAGGATCCAGAGAGA 58.175 47.619 15.82 0.00 0.00 3.10
55 56 3.382278 TGCAAGAAGGATCCAGAGAGAT 58.618 45.455 15.82 0.00 0.00 2.75
56 57 3.779183 TGCAAGAAGGATCCAGAGAGATT 59.221 43.478 15.82 0.00 0.00 2.40
57 58 4.128643 GCAAGAAGGATCCAGAGAGATTG 58.871 47.826 15.82 9.54 0.00 2.67
58 59 4.383989 GCAAGAAGGATCCAGAGAGATTGT 60.384 45.833 15.82 0.00 0.00 2.71
59 60 5.163364 GCAAGAAGGATCCAGAGAGATTGTA 60.163 44.000 15.82 0.00 0.00 2.41
60 61 6.514947 CAAGAAGGATCCAGAGAGATTGTAG 58.485 44.000 15.82 0.00 0.00 2.74
61 62 6.024563 AGAAGGATCCAGAGAGATTGTAGA 57.975 41.667 15.82 0.00 0.00 2.59
62 63 6.439487 AGAAGGATCCAGAGAGATTGTAGAA 58.561 40.000 15.82 0.00 0.00 2.10
63 64 6.900186 AGAAGGATCCAGAGAGATTGTAGAAA 59.100 38.462 15.82 0.00 0.00 2.52
64 65 6.729690 AGGATCCAGAGAGATTGTAGAAAG 57.270 41.667 15.82 0.00 0.00 2.62
65 66 5.602145 AGGATCCAGAGAGATTGTAGAAAGG 59.398 44.000 15.82 0.00 0.00 3.11
66 67 5.221621 GGATCCAGAGAGATTGTAGAAAGGG 60.222 48.000 6.95 0.00 0.00 3.95
67 68 4.947883 TCCAGAGAGATTGTAGAAAGGGA 58.052 43.478 0.00 0.00 0.00 4.20
68 69 5.533112 TCCAGAGAGATTGTAGAAAGGGAT 58.467 41.667 0.00 0.00 0.00 3.85
69 70 6.683537 TCCAGAGAGATTGTAGAAAGGGATA 58.316 40.000 0.00 0.00 0.00 2.59
70 71 6.780031 TCCAGAGAGATTGTAGAAAGGGATAG 59.220 42.308 0.00 0.00 0.00 2.08
71 72 6.014669 CCAGAGAGATTGTAGAAAGGGATAGG 60.015 46.154 0.00 0.00 0.00 2.57
72 73 6.780031 CAGAGAGATTGTAGAAAGGGATAGGA 59.220 42.308 0.00 0.00 0.00 2.94
73 74 7.454380 CAGAGAGATTGTAGAAAGGGATAGGAT 59.546 40.741 0.00 0.00 0.00 3.24
74 75 8.683445 AGAGAGATTGTAGAAAGGGATAGGATA 58.317 37.037 0.00 0.00 0.00 2.59
75 76 8.893563 AGAGATTGTAGAAAGGGATAGGATAG 57.106 38.462 0.00 0.00 0.00 2.08
76 77 8.461033 AGAGATTGTAGAAAGGGATAGGATAGT 58.539 37.037 0.00 0.00 0.00 2.12
77 78 8.658840 AGATTGTAGAAAGGGATAGGATAGTC 57.341 38.462 0.00 0.00 0.00 2.59
78 79 7.676468 AGATTGTAGAAAGGGATAGGATAGTCC 59.324 40.741 0.00 0.00 36.58 3.85
79 80 6.289482 TGTAGAAAGGGATAGGATAGTCCA 57.711 41.667 0.00 0.00 39.61 4.02
80 81 6.315714 TGTAGAAAGGGATAGGATAGTCCAG 58.684 44.000 0.00 0.00 39.61 3.86
81 82 5.426325 AGAAAGGGATAGGATAGTCCAGT 57.574 43.478 0.00 0.00 39.61 4.00
82 83 5.793967 AGAAAGGGATAGGATAGTCCAGTT 58.206 41.667 0.00 0.00 39.61 3.16
83 84 6.935036 AGAAAGGGATAGGATAGTCCAGTTA 58.065 40.000 0.00 0.00 39.61 2.24
84 85 7.549141 AGAAAGGGATAGGATAGTCCAGTTAT 58.451 38.462 0.00 0.00 39.61 1.89
85 86 8.019652 AGAAAGGGATAGGATAGTCCAGTTATT 58.980 37.037 0.00 0.00 39.61 1.40
86 87 8.582891 AAAGGGATAGGATAGTCCAGTTATTT 57.417 34.615 0.00 0.00 39.61 1.40
87 88 7.800300 AGGGATAGGATAGTCCAGTTATTTC 57.200 40.000 0.00 0.00 39.61 2.17
88 89 7.313731 AGGGATAGGATAGTCCAGTTATTTCA 58.686 38.462 0.00 0.00 39.61 2.69
89 90 7.794683 AGGGATAGGATAGTCCAGTTATTTCAA 59.205 37.037 0.00 0.00 39.61 2.69
90 91 8.097662 GGGATAGGATAGTCCAGTTATTTCAAG 58.902 40.741 0.00 0.00 39.61 3.02
91 92 8.871125 GGATAGGATAGTCCAGTTATTTCAAGA 58.129 37.037 0.00 0.00 39.61 3.02
92 93 9.921637 GATAGGATAGTCCAGTTATTTCAAGAG 57.078 37.037 0.00 0.00 39.61 2.85
93 94 7.979786 AGGATAGTCCAGTTATTTCAAGAGA 57.020 36.000 0.00 0.00 39.61 3.10
94 95 7.787028 AGGATAGTCCAGTTATTTCAAGAGAC 58.213 38.462 0.00 0.00 39.61 3.36
95 96 7.621683 AGGATAGTCCAGTTATTTCAAGAGACT 59.378 37.037 0.00 0.00 39.61 3.24
96 97 8.261522 GGATAGTCCAGTTATTTCAAGAGACTT 58.738 37.037 0.00 0.00 36.28 3.01
97 98 9.092876 GATAGTCCAGTTATTTCAAGAGACTTG 57.907 37.037 5.29 5.29 35.18 3.16
98 99 6.831976 AGTCCAGTTATTTCAAGAGACTTGT 58.168 36.000 10.56 0.00 29.31 3.16
99 100 7.283329 AGTCCAGTTATTTCAAGAGACTTGTT 58.717 34.615 10.56 2.05 29.31 2.83
100 101 7.227512 AGTCCAGTTATTTCAAGAGACTTGTTG 59.772 37.037 10.56 1.88 29.31 3.33
101 102 7.012421 GTCCAGTTATTTCAAGAGACTTGTTGT 59.988 37.037 10.56 2.43 0.00 3.32
102 103 8.208224 TCCAGTTATTTCAAGAGACTTGTTGTA 58.792 33.333 10.56 1.68 0.00 2.41
103 104 8.836413 CCAGTTATTTCAAGAGACTTGTTGTAA 58.164 33.333 10.56 6.37 0.00 2.41
136 137 7.865706 ACTTGAGAAAGAAATATAATGCCGT 57.134 32.000 0.00 0.00 0.00 5.68
137 138 8.958119 ACTTGAGAAAGAAATATAATGCCGTA 57.042 30.769 0.00 0.00 0.00 4.02
138 139 8.827677 ACTTGAGAAAGAAATATAATGCCGTAC 58.172 33.333 0.00 0.00 0.00 3.67
139 140 8.725405 TTGAGAAAGAAATATAATGCCGTACA 57.275 30.769 0.00 0.00 0.00 2.90
140 141 8.365399 TGAGAAAGAAATATAATGCCGTACAG 57.635 34.615 0.00 0.00 0.00 2.74
141 142 7.042051 TGAGAAAGAAATATAATGCCGTACAGC 60.042 37.037 0.00 0.00 0.00 4.40
142 143 6.992715 AGAAAGAAATATAATGCCGTACAGCT 59.007 34.615 2.20 0.00 0.00 4.24
143 144 7.499232 AGAAAGAAATATAATGCCGTACAGCTT 59.501 33.333 2.20 0.00 0.00 3.74
144 145 6.545504 AGAAATATAATGCCGTACAGCTTG 57.454 37.500 2.20 0.00 0.00 4.01
145 146 6.055588 AGAAATATAATGCCGTACAGCTTGT 58.944 36.000 2.20 0.00 0.00 3.16
146 147 6.542370 AGAAATATAATGCCGTACAGCTTGTT 59.458 34.615 2.20 0.00 0.00 2.83
147 148 5.924475 ATATAATGCCGTACAGCTTGTTC 57.076 39.130 2.20 0.00 0.00 3.18
148 149 1.890876 AATGCCGTACAGCTTGTTCA 58.109 45.000 2.20 0.00 0.00 3.18
149 150 1.890876 ATGCCGTACAGCTTGTTCAA 58.109 45.000 2.20 0.00 0.00 2.69
150 151 1.669604 TGCCGTACAGCTTGTTCAAA 58.330 45.000 2.20 0.00 0.00 2.69
151 152 1.332375 TGCCGTACAGCTTGTTCAAAC 59.668 47.619 2.20 0.00 0.00 2.93
152 153 1.334689 GCCGTACAGCTTGTTCAAACC 60.335 52.381 0.00 0.00 0.00 3.27
153 154 1.944024 CCGTACAGCTTGTTCAAACCA 59.056 47.619 0.00 0.00 0.00 3.67
154 155 2.032030 CCGTACAGCTTGTTCAAACCAG 60.032 50.000 0.00 0.00 0.00 4.00
155 156 2.602217 CGTACAGCTTGTTCAAACCAGC 60.602 50.000 10.15 10.15 45.18 4.85
156 157 1.473258 ACAGCTTGTTCAAACCAGCA 58.527 45.000 17.92 0.00 46.69 4.41
157 158 1.824230 ACAGCTTGTTCAAACCAGCAA 59.176 42.857 17.92 0.00 46.69 3.91
158 159 2.233431 ACAGCTTGTTCAAACCAGCAAA 59.767 40.909 17.92 0.00 46.69 3.68
159 160 3.260740 CAGCTTGTTCAAACCAGCAAAA 58.739 40.909 17.92 0.00 46.69 2.44
160 161 3.683822 CAGCTTGTTCAAACCAGCAAAAA 59.316 39.130 17.92 0.00 46.69 1.94
161 162 4.333372 CAGCTTGTTCAAACCAGCAAAAAT 59.667 37.500 17.92 0.00 46.69 1.82
162 163 4.943093 AGCTTGTTCAAACCAGCAAAAATT 59.057 33.333 17.92 0.00 46.69 1.82
163 164 5.415389 AGCTTGTTCAAACCAGCAAAAATTT 59.585 32.000 17.92 0.00 46.69 1.82
164 165 6.597280 AGCTTGTTCAAACCAGCAAAAATTTA 59.403 30.769 17.92 0.00 46.69 1.40
165 166 7.282901 AGCTTGTTCAAACCAGCAAAAATTTAT 59.717 29.630 17.92 0.00 46.69 1.40
166 167 7.914871 GCTTGTTCAAACCAGCAAAAATTTATT 59.085 29.630 12.58 0.00 44.48 1.40
167 168 9.437045 CTTGTTCAAACCAGCAAAAATTTATTC 57.563 29.630 0.00 0.00 0.00 1.75
168 169 8.729805 TGTTCAAACCAGCAAAAATTTATTCT 57.270 26.923 0.00 0.00 0.00 2.40
169 170 8.825745 TGTTCAAACCAGCAAAAATTTATTCTC 58.174 29.630 0.00 0.00 0.00 2.87
170 171 7.961325 TCAAACCAGCAAAAATTTATTCTCC 57.039 32.000 0.00 0.00 0.00 3.71
171 172 6.934083 TCAAACCAGCAAAAATTTATTCTCCC 59.066 34.615 0.00 0.00 0.00 4.30
172 173 5.072040 ACCAGCAAAAATTTATTCTCCCG 57.928 39.130 0.00 0.00 0.00 5.14
173 174 4.081697 ACCAGCAAAAATTTATTCTCCCGG 60.082 41.667 0.00 0.00 0.00 5.73
174 175 4.081697 CCAGCAAAAATTTATTCTCCCGGT 60.082 41.667 0.00 0.00 0.00 5.28
175 176 5.102313 CAGCAAAAATTTATTCTCCCGGTC 58.898 41.667 0.00 0.00 0.00 4.79
176 177 4.159693 AGCAAAAATTTATTCTCCCGGTCC 59.840 41.667 0.00 0.00 0.00 4.46
177 178 4.081917 GCAAAAATTTATTCTCCCGGTCCA 60.082 41.667 0.00 0.00 0.00 4.02
178 179 5.567823 GCAAAAATTTATTCTCCCGGTCCAA 60.568 40.000 0.00 0.00 0.00 3.53
179 180 5.914898 AAAATTTATTCTCCCGGTCCAAG 57.085 39.130 0.00 0.00 0.00 3.61
180 181 4.586306 AATTTATTCTCCCGGTCCAAGT 57.414 40.909 0.00 0.00 0.00 3.16
181 182 3.622166 TTTATTCTCCCGGTCCAAGTC 57.378 47.619 0.00 0.00 0.00 3.01
182 183 2.544844 TATTCTCCCGGTCCAAGTCT 57.455 50.000 0.00 0.00 0.00 3.24
183 184 1.196012 ATTCTCCCGGTCCAAGTCTC 58.804 55.000 0.00 0.00 0.00 3.36
184 185 0.114560 TTCTCCCGGTCCAAGTCTCT 59.885 55.000 0.00 0.00 0.00 3.10
185 186 0.997363 TCTCCCGGTCCAAGTCTCTA 59.003 55.000 0.00 0.00 0.00 2.43
186 187 1.569548 TCTCCCGGTCCAAGTCTCTAT 59.430 52.381 0.00 0.00 0.00 1.98
187 188 1.683917 CTCCCGGTCCAAGTCTCTATG 59.316 57.143 0.00 0.00 0.00 2.23
188 189 1.006758 TCCCGGTCCAAGTCTCTATGT 59.993 52.381 0.00 0.00 0.00 2.29
189 190 1.409427 CCCGGTCCAAGTCTCTATGTC 59.591 57.143 0.00 0.00 0.00 3.06
190 191 1.409427 CCGGTCCAAGTCTCTATGTCC 59.591 57.143 0.00 0.00 0.00 4.02
191 192 2.100197 CGGTCCAAGTCTCTATGTCCA 58.900 52.381 0.00 0.00 0.00 4.02
192 193 2.496070 CGGTCCAAGTCTCTATGTCCAA 59.504 50.000 0.00 0.00 0.00 3.53
193 194 3.676324 CGGTCCAAGTCTCTATGTCCAAC 60.676 52.174 0.00 0.00 0.00 3.77
194 195 3.260884 GGTCCAAGTCTCTATGTCCAACA 59.739 47.826 0.00 0.00 0.00 3.33
195 196 4.499183 GTCCAAGTCTCTATGTCCAACAG 58.501 47.826 0.00 0.00 0.00 3.16
196 197 3.515502 TCCAAGTCTCTATGTCCAACAGG 59.484 47.826 0.00 0.00 0.00 4.00
197 198 3.265791 CAAGTCTCTATGTCCAACAGGC 58.734 50.000 0.00 0.00 0.00 4.85
198 199 1.834263 AGTCTCTATGTCCAACAGGCC 59.166 52.381 0.00 0.00 0.00 5.19
199 200 1.134371 GTCTCTATGTCCAACAGGCCC 60.134 57.143 0.00 0.00 0.00 5.80
200 201 0.181350 CTCTATGTCCAACAGGCCCC 59.819 60.000 0.00 0.00 0.00 5.80
201 202 1.153168 CTATGTCCAACAGGCCCCG 60.153 63.158 0.00 0.00 0.00 5.73
202 203 3.338275 TATGTCCAACAGGCCCCGC 62.338 63.158 0.00 0.00 0.00 6.13
204 205 3.712907 GTCCAACAGGCCCCGCTA 61.713 66.667 0.00 0.00 0.00 4.26
205 206 2.931105 TCCAACAGGCCCCGCTAA 60.931 61.111 0.00 0.00 0.00 3.09
206 207 2.750237 CCAACAGGCCCCGCTAAC 60.750 66.667 0.00 0.00 0.00 2.34
207 208 3.124921 CAACAGGCCCCGCTAACG 61.125 66.667 0.00 0.00 39.67 3.18
249 250 3.444751 TCGTGACGAGAGGAGAGAG 57.555 57.895 2.39 0.00 0.00 3.20
279 285 1.149987 GTCCGTGCGTGTGGAAATTA 58.850 50.000 0.00 0.00 35.67 1.40
281 287 1.801771 TCCGTGCGTGTGGAAATTAAG 59.198 47.619 0.00 0.00 0.00 1.85
282 288 1.533731 CCGTGCGTGTGGAAATTAAGT 59.466 47.619 0.00 0.00 0.00 2.24
283 289 2.570169 CGTGCGTGTGGAAATTAAGTG 58.430 47.619 0.00 0.00 0.00 3.16
284 290 2.032377 CGTGCGTGTGGAAATTAAGTGT 60.032 45.455 0.00 0.00 0.00 3.55
285 291 3.184783 CGTGCGTGTGGAAATTAAGTGTA 59.815 43.478 0.00 0.00 0.00 2.90
286 292 4.318903 CGTGCGTGTGGAAATTAAGTGTAA 60.319 41.667 0.00 0.00 0.00 2.41
288 294 6.146898 GTGCGTGTGGAAATTAAGTGTAATT 58.853 36.000 0.00 0.00 40.88 1.40
289 295 6.304683 GTGCGTGTGGAAATTAAGTGTAATTC 59.695 38.462 0.00 0.00 38.69 2.17
290 296 6.017026 TGCGTGTGGAAATTAAGTGTAATTCA 60.017 34.615 0.00 0.00 38.69 2.57
291 297 6.858993 GCGTGTGGAAATTAAGTGTAATTCAA 59.141 34.615 0.00 0.00 38.69 2.69
292 298 7.060633 GCGTGTGGAAATTAAGTGTAATTCAAG 59.939 37.037 0.00 0.00 38.69 3.02
293 299 8.073768 CGTGTGGAAATTAAGTGTAATTCAAGT 58.926 33.333 0.00 0.00 38.69 3.16
294 300 9.394477 GTGTGGAAATTAAGTGTAATTCAAGTC 57.606 33.333 0.00 0.00 38.69 3.01
295 301 8.573035 TGTGGAAATTAAGTGTAATTCAAGTCC 58.427 33.333 0.00 0.00 38.69 3.85
296 302 8.573035 GTGGAAATTAAGTGTAATTCAAGTCCA 58.427 33.333 6.37 6.37 38.94 4.02
297 303 8.792633 TGGAAATTAAGTGTAATTCAAGTCCAG 58.207 33.333 6.37 0.00 37.66 3.86
298 304 8.793592 GGAAATTAAGTGTAATTCAAGTCCAGT 58.206 33.333 0.00 0.00 38.69 4.00
299 305 9.827411 GAAATTAAGTGTAATTCAAGTCCAGTC 57.173 33.333 0.00 0.00 38.69 3.51
300 306 8.918202 AATTAAGTGTAATTCAAGTCCAGTCA 57.082 30.769 0.00 0.00 35.41 3.41
301 307 8.918202 ATTAAGTGTAATTCAAGTCCAGTCAA 57.082 30.769 0.00 0.00 0.00 3.18
302 308 6.867662 AAGTGTAATTCAAGTCCAGTCAAG 57.132 37.500 0.00 0.00 0.00 3.02
303 309 5.930135 AGTGTAATTCAAGTCCAGTCAAGT 58.070 37.500 0.00 0.00 0.00 3.16
304 310 5.992217 AGTGTAATTCAAGTCCAGTCAAGTC 59.008 40.000 0.00 0.00 0.00 3.01
305 311 5.179555 GTGTAATTCAAGTCCAGTCAAGTCC 59.820 44.000 0.00 0.00 0.00 3.85
306 312 2.930826 TTCAAGTCCAGTCAAGTCCC 57.069 50.000 0.00 0.00 0.00 4.46
307 313 1.056660 TCAAGTCCAGTCAAGTCCCC 58.943 55.000 0.00 0.00 0.00 4.81
308 314 1.059913 CAAGTCCAGTCAAGTCCCCT 58.940 55.000 0.00 0.00 0.00 4.79
309 315 2.158219 TCAAGTCCAGTCAAGTCCCCTA 60.158 50.000 0.00 0.00 0.00 3.53
310 316 2.637872 CAAGTCCAGTCAAGTCCCCTAA 59.362 50.000 0.00 0.00 0.00 2.69
311 317 2.986050 AGTCCAGTCAAGTCCCCTAAA 58.014 47.619 0.00 0.00 0.00 1.85
312 318 3.323775 AGTCCAGTCAAGTCCCCTAAAA 58.676 45.455 0.00 0.00 0.00 1.52
313 319 3.720002 AGTCCAGTCAAGTCCCCTAAAAA 59.280 43.478 0.00 0.00 0.00 1.94
353 359 0.025513 GACAGCAATGACGTCGATGC 59.974 55.000 28.11 28.11 39.06 3.91
356 362 1.086067 AGCAATGACGTCGATGCCTG 61.086 55.000 30.22 14.74 39.59 4.85
358 364 1.815421 AATGACGTCGATGCCTGGC 60.815 57.895 12.87 12.87 0.00 4.85
370 376 4.828296 CCTGGCCCCTGCATGACC 62.828 72.222 0.00 0.00 40.13 4.02
439 445 2.232452 CAGTCTCTCCGTGTGGATTCTT 59.768 50.000 0.00 0.00 45.33 2.52
601 618 1.480219 CGCTCGCCGTACAGGAAATC 61.480 60.000 7.77 0.00 45.00 2.17
605 622 2.522638 GCCGTACAGGAAATCGCCG 61.523 63.158 7.77 0.00 45.00 6.46
608 625 1.713830 GTACAGGAAATCGCCGTGC 59.286 57.895 0.00 0.00 0.00 5.34
609 626 1.017177 GTACAGGAAATCGCCGTGCA 61.017 55.000 0.00 0.00 0.00 4.57
909 2051 3.258123 CCAAAATCATCCGAACCCAAACT 59.742 43.478 0.00 0.00 0.00 2.66
1425 2575 1.577468 TCGTAATGTGCTATTGCGGG 58.423 50.000 18.52 0.46 43.34 6.13
1473 2623 1.032657 TCTGGAGTAGCTCTCGGTGC 61.033 60.000 0.00 0.00 43.60 5.01
1503 2653 4.749976 ACAAACCTGTGTTTTAATGCGTT 58.250 34.783 0.00 0.00 41.92 4.84
1670 2821 4.018870 TGTCCATGCTTTGGTATCCAGTAA 60.019 41.667 6.22 0.00 46.52 2.24
1791 2942 2.399916 AGTTCTGCTGAATCTGCCTC 57.600 50.000 9.40 0.00 34.40 4.70
1832 2983 4.864916 TGCATGCTATCGAAACTCTTTC 57.135 40.909 20.33 0.00 36.32 2.62
1862 3013 6.728089 TTTGGATTCTGCATATTTGGCATA 57.272 33.333 0.00 0.00 41.06 3.14
2016 3168 8.091385 TGCATTGACATAATATCATGACTGAC 57.909 34.615 0.00 0.00 33.22 3.51
2030 3182 6.997655 TCATGACTGACAGTTAATCTTCTGT 58.002 36.000 10.01 0.00 45.81 3.41
2079 3231 6.097129 TGGAACTTTGTTTTACCTACCCAAAG 59.903 38.462 8.44 8.44 44.61 2.77
2136 3288 5.590663 GTGTCTATCAGTATCCAGTGTCTCA 59.409 44.000 0.00 0.00 0.00 3.27
2517 3671 5.189180 GGTGAACTTATCCATGCTTCTTCT 58.811 41.667 0.00 0.00 0.00 2.85
2518 3672 5.649831 GGTGAACTTATCCATGCTTCTTCTT 59.350 40.000 0.00 0.00 0.00 2.52
2585 3739 2.580783 CCAATGAGGGGTTTCTTAGGGA 59.419 50.000 0.00 0.00 0.00 4.20
2769 3923 1.935199 GCTCTTCTCATGAAGCAGCTC 59.065 52.381 11.42 0.00 46.81 4.09
3028 4182 3.106054 ACTGATCATGAGACTTCTGGCT 58.894 45.455 0.09 0.00 0.00 4.75
3133 4287 2.002586 CCGCACAACCAATCTCTAGTG 58.997 52.381 0.00 0.00 0.00 2.74
3176 4330 2.223971 ACATCGACACTCAAACGACCTT 60.224 45.455 0.00 0.00 38.79 3.50
3179 4333 1.226746 GACACTCAAACGACCTTGGG 58.773 55.000 0.00 0.00 32.68 4.12
3318 4472 8.606754 TTCAAGATTATGATGAATTTCCCCAA 57.393 30.769 0.00 0.00 0.00 4.12
3398 4552 2.181125 TCCCTAGTTTGATGTACGCCA 58.819 47.619 0.00 0.00 0.00 5.69
3424 4581 7.903995 ATGTTTCTGTTCTTTTTCTGCAAAA 57.096 28.000 0.00 0.00 33.12 2.44
3468 4627 3.194116 AGCTGCCAATTTTGTATGTCCAG 59.806 43.478 0.00 0.00 0.00 3.86
3470 4629 4.157656 GCTGCCAATTTTGTATGTCCAGTA 59.842 41.667 0.00 0.00 0.00 2.74
3505 4664 3.483808 TCATGTGCACAAGTGGAGTTA 57.516 42.857 25.72 0.00 0.00 2.24
3519 4678 8.697292 ACAAGTGGAGTTAAGATTAGTAGGATC 58.303 37.037 0.00 0.00 0.00 3.36
3540 4699 6.183360 GGATCTTGCAAAGTTTATACCATGCT 60.183 38.462 0.00 0.00 46.34 3.79
3553 4712 8.594550 GTTTATACCATGCTATCTCCTTCCTTA 58.405 37.037 0.00 0.00 0.00 2.69
3554 4713 8.736097 TTATACCATGCTATCTCCTTCCTTAA 57.264 34.615 0.00 0.00 0.00 1.85
3560 4719 6.814954 TGCTATCTCCTTCCTTAAATGTCT 57.185 37.500 0.00 0.00 0.00 3.41
3585 4765 0.981277 ATGGATTTCCCTCCGTCCGT 60.981 55.000 0.00 0.00 38.21 4.69
3586 4766 1.196104 TGGATTTCCCTCCGTCCGTT 61.196 55.000 0.00 0.00 38.21 4.44
3587 4767 0.035725 GGATTTCCCTCCGTCCGTTT 60.036 55.000 0.00 0.00 0.00 3.60
3589 4769 0.958876 ATTTCCCTCCGTCCGTTTGC 60.959 55.000 0.00 0.00 0.00 3.68
3612 4886 6.086222 GCTATGTTGTTATGGTGTTCTGTTG 58.914 40.000 0.00 0.00 0.00 3.33
3619 4893 6.237901 TGTTATGGTGTTCTGTTGCTATCTT 58.762 36.000 0.00 0.00 0.00 2.40
3732 5011 0.107848 ATTAGGTTCGCAAGGGTCCG 60.108 55.000 0.00 0.00 38.47 4.79
3738 5017 1.196127 GTTCGCAAGGGTCCGTAAAAG 59.804 52.381 0.00 0.00 38.47 2.27
3739 5018 0.680618 TCGCAAGGGTCCGTAAAAGA 59.319 50.000 0.00 0.00 38.47 2.52
3740 5019 1.276989 TCGCAAGGGTCCGTAAAAGAT 59.723 47.619 0.00 0.00 38.47 2.40
3785 5206 6.418585 AAGTTACTTCGTATTTGCTAAGCC 57.581 37.500 0.00 0.00 0.00 4.35
3786 5207 5.484715 AGTTACTTCGTATTTGCTAAGCCA 58.515 37.500 0.00 0.00 0.00 4.75
3790 5211 3.733024 TCGTATTTGCTAAGCCAAACG 57.267 42.857 0.00 0.00 37.51 3.60
3868 5291 7.063780 GCAATTTGATATTCTTCACCAACAAGG 59.936 37.037 0.00 0.00 45.67 3.61
3875 5298 4.981806 TCTTCACCAACAAGGACAAAAG 57.018 40.909 0.00 0.00 41.22 2.27
3889 5312 2.751259 GACAAAAGAGGATGCATGCAGA 59.249 45.455 26.69 2.79 0.00 4.26
3921 5344 2.632996 CCGGGGAGCATTTAGATGTCTA 59.367 50.000 0.00 0.00 35.63 2.59
3927 5350 6.459923 GGGAGCATTTAGATGTCTAACTAGG 58.540 44.000 2.08 0.00 38.09 3.02
3977 5492 7.889469 AGAACTTTAACATGATTCTGTTGCAT 58.111 30.769 0.00 0.00 39.60 3.96
3978 5493 8.025445 AGAACTTTAACATGATTCTGTTGCATC 58.975 33.333 0.00 0.00 39.60 3.91
3979 5494 6.317088 ACTTTAACATGATTCTGTTGCATCG 58.683 36.000 0.00 0.00 39.60 3.84
4017 5535 6.013725 TGCCCTTTCAGAATTCAGAGTTAGTA 60.014 38.462 8.44 0.00 0.00 1.82
4018 5536 6.314152 GCCCTTTCAGAATTCAGAGTTAGTAC 59.686 42.308 8.44 0.00 0.00 2.73
4020 5538 8.097662 CCCTTTCAGAATTCAGAGTTAGTACTT 58.902 37.037 8.44 0.00 33.84 2.24
4021 5539 9.145865 CCTTTCAGAATTCAGAGTTAGTACTTC 57.854 37.037 8.44 0.00 33.84 3.01
4022 5540 9.698309 CTTTCAGAATTCAGAGTTAGTACTTCA 57.302 33.333 8.44 0.00 33.84 3.02
4026 5544 7.763528 CAGAATTCAGAGTTAGTACTTCATGCT 59.236 37.037 8.44 0.00 33.84 3.79
4027 5545 7.763528 AGAATTCAGAGTTAGTACTTCATGCTG 59.236 37.037 8.44 3.58 33.84 4.41
4028 5546 4.748892 TCAGAGTTAGTACTTCATGCTGC 58.251 43.478 0.00 0.00 33.84 5.25
4029 5547 4.220602 TCAGAGTTAGTACTTCATGCTGCA 59.779 41.667 4.13 4.13 33.84 4.41
4030 5548 5.105187 TCAGAGTTAGTACTTCATGCTGCAT 60.105 40.000 9.81 9.81 33.84 3.96
4032 5550 5.128499 AGAGTTAGTACTTCATGCTGCATCT 59.872 40.000 13.10 8.25 33.84 2.90
4033 5551 5.355596 AGTTAGTACTTCATGCTGCATCTC 58.644 41.667 13.10 0.28 0.00 2.75
4034 5552 5.128499 AGTTAGTACTTCATGCTGCATCTCT 59.872 40.000 13.10 7.41 0.00 3.10
4035 5553 4.484537 AGTACTTCATGCTGCATCTCTT 57.515 40.909 13.10 0.46 0.00 2.85
4036 5554 5.604758 AGTACTTCATGCTGCATCTCTTA 57.395 39.130 13.10 0.00 0.00 2.10
4037 5555 5.599732 AGTACTTCATGCTGCATCTCTTAG 58.400 41.667 13.10 8.06 0.00 2.18
4038 5556 4.484537 ACTTCATGCTGCATCTCTTAGT 57.515 40.909 13.10 8.65 0.00 2.24
4039 5557 4.440880 ACTTCATGCTGCATCTCTTAGTC 58.559 43.478 13.10 0.00 0.00 2.59
4040 5558 4.081254 ACTTCATGCTGCATCTCTTAGTCA 60.081 41.667 13.10 0.00 0.00 3.41
4041 5559 4.476628 TCATGCTGCATCTCTTAGTCAA 57.523 40.909 13.10 0.00 0.00 3.18
4042 5560 4.835678 TCATGCTGCATCTCTTAGTCAAA 58.164 39.130 13.10 0.00 0.00 2.69
4043 5561 4.633126 TCATGCTGCATCTCTTAGTCAAAC 59.367 41.667 13.10 0.00 0.00 2.93
4044 5562 3.338249 TGCTGCATCTCTTAGTCAAACC 58.662 45.455 0.00 0.00 0.00 3.27
4045 5563 2.349886 GCTGCATCTCTTAGTCAAACCG 59.650 50.000 0.00 0.00 0.00 4.44
4046 5564 2.932614 CTGCATCTCTTAGTCAAACCGG 59.067 50.000 0.00 0.00 0.00 5.28
4047 5565 2.565391 TGCATCTCTTAGTCAAACCGGA 59.435 45.455 9.46 0.00 0.00 5.14
4048 5566 2.930682 GCATCTCTTAGTCAAACCGGAC 59.069 50.000 9.46 0.00 38.08 4.79
4050 5568 4.822026 CATCTCTTAGTCAAACCGGACTT 58.178 43.478 9.46 0.00 45.59 3.01
4051 5569 4.516365 TCTCTTAGTCAAACCGGACTTC 57.484 45.455 9.46 0.00 45.59 3.01
4073 5591 9.744468 ACTTCACATATTTGTAACCTTGTTTTC 57.256 29.630 0.00 0.00 33.76 2.29
4077 5595 8.901748 CACATATTTGTAACCTTGTTTTCGAAG 58.098 33.333 0.00 0.00 33.76 3.79
4079 5597 9.840427 CATATTTGTAACCTTGTTTTCGAAGAT 57.160 29.630 0.00 0.00 35.04 2.40
4101 5619 6.832384 AGATCTGCTTGGTTGATATGAATGTT 59.168 34.615 0.00 0.00 0.00 2.71
4137 5658 2.482142 GGAGCTAGGTTCAGTTCGATGG 60.482 54.545 0.00 0.00 0.00 3.51
4157 5678 8.879759 TCGATGGTGACTAATTTTACAAAGATC 58.120 33.333 0.00 0.00 0.00 2.75
4161 5682 9.349713 TGGTGACTAATTTTACAAAGATCAGTT 57.650 29.630 0.00 0.00 0.00 3.16
4192 5714 1.234821 TTTTGCTGTAGGGCTTGACG 58.765 50.000 0.00 0.00 0.00 4.35
4209 5732 4.436242 TGACGATTGTTCTCCTACTGAC 57.564 45.455 0.00 0.00 0.00 3.51
4222 5745 3.006967 TCCTACTGACTCAGTTGCCTTTC 59.993 47.826 16.89 0.00 42.59 2.62
4223 5746 2.262423 ACTGACTCAGTTGCCTTTCC 57.738 50.000 5.82 0.00 42.59 3.13
4233 5756 1.270826 GTTGCCTTTCCTTCAGCTTCC 59.729 52.381 0.00 0.00 0.00 3.46
4273 5796 1.746615 ATGGTGATGCGTGAGGTGC 60.747 57.895 0.00 0.00 0.00 5.01
4296 5819 0.245539 CCATTGGCAGTGAAAGCAGG 59.754 55.000 12.01 0.00 0.00 4.85
4312 5835 1.793258 CAGGAGTTGTGCTCAGAGTG 58.207 55.000 0.00 0.00 45.88 3.51
4313 5836 1.069823 CAGGAGTTGTGCTCAGAGTGT 59.930 52.381 0.00 0.00 45.88 3.55
4314 5837 1.342819 AGGAGTTGTGCTCAGAGTGTC 59.657 52.381 0.00 0.00 45.88 3.67
4316 5839 0.747255 AGTTGTGCTCAGAGTGTCGT 59.253 50.000 0.00 0.00 0.00 4.34
4317 5840 1.954382 AGTTGTGCTCAGAGTGTCGTA 59.046 47.619 0.00 0.00 0.00 3.43
4318 5841 2.558795 AGTTGTGCTCAGAGTGTCGTAT 59.441 45.455 0.00 0.00 0.00 3.06
4319 5842 3.756963 AGTTGTGCTCAGAGTGTCGTATA 59.243 43.478 0.00 0.00 0.00 1.47
4320 5843 3.759527 TGTGCTCAGAGTGTCGTATAC 57.240 47.619 0.00 0.00 0.00 1.47
4432 5958 2.535836 ACCCTACTCTCCTTGTCCTC 57.464 55.000 0.00 0.00 0.00 3.71
4457 5984 5.934625 ACAGTAGAATAGCCAACAACTGAAG 59.065 40.000 6.57 0.00 37.04 3.02
4524 6051 5.057149 ACCTGTTCTGTACATTCTGTGAAC 58.943 41.667 13.62 13.62 35.85 3.18
4605 6132 2.615447 CGTCTTATCTACGTGCAGGGTA 59.385 50.000 11.67 4.42 35.66 3.69
4609 6136 5.240183 GTCTTATCTACGTGCAGGGTACATA 59.760 44.000 11.67 0.67 0.00 2.29
4617 6144 1.117150 GCAGGGTACATAGACGGGAA 58.883 55.000 0.00 0.00 0.00 3.97
4623 6151 3.056749 GGGTACATAGACGGGAAGCTATG 60.057 52.174 0.00 0.00 45.87 2.23
4671 6200 0.109532 TTTGCTCCCGGACATGAACA 59.890 50.000 0.73 0.00 0.00 3.18
4677 6206 1.633432 TCCCGGACATGAACAATTCCT 59.367 47.619 0.73 0.00 0.00 3.36
4680 6209 3.377172 CCCGGACATGAACAATTCCTTAC 59.623 47.826 0.73 0.00 0.00 2.34
4681 6210 4.006989 CCGGACATGAACAATTCCTTACA 58.993 43.478 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.069673 ACAATCAATAACACCCTCACCATAGA 60.070 38.462 0.00 0.00 0.00 1.98
1 2 6.038603 CACAATCAATAACACCCTCACCATAG 59.961 42.308 0.00 0.00 0.00 2.23
2 3 5.885352 CACAATCAATAACACCCTCACCATA 59.115 40.000 0.00 0.00 0.00 2.74
3 4 4.706476 CACAATCAATAACACCCTCACCAT 59.294 41.667 0.00 0.00 0.00 3.55
4 5 4.078537 CACAATCAATAACACCCTCACCA 58.921 43.478 0.00 0.00 0.00 4.17
5 6 4.331968 TCACAATCAATAACACCCTCACC 58.668 43.478 0.00 0.00 0.00 4.02
6 7 5.335661 GGTTCACAATCAATAACACCCTCAC 60.336 44.000 0.00 0.00 0.00 3.51
7 8 4.764823 GGTTCACAATCAATAACACCCTCA 59.235 41.667 0.00 0.00 0.00 3.86
8 9 5.010282 AGGTTCACAATCAATAACACCCTC 58.990 41.667 0.00 0.00 0.00 4.30
9 10 4.998051 AGGTTCACAATCAATAACACCCT 58.002 39.130 0.00 0.00 0.00 4.34
10 11 5.722021 AAGGTTCACAATCAATAACACCC 57.278 39.130 0.00 0.00 0.00 4.61
11 12 6.751888 GCATAAGGTTCACAATCAATAACACC 59.248 38.462 0.00 0.00 0.00 4.16
12 13 7.312154 TGCATAAGGTTCACAATCAATAACAC 58.688 34.615 0.00 0.00 0.00 3.32
13 14 7.459795 TGCATAAGGTTCACAATCAATAACA 57.540 32.000 0.00 0.00 0.00 2.41
14 15 8.243426 TCTTGCATAAGGTTCACAATCAATAAC 58.757 33.333 0.00 0.00 34.59 1.89
15 16 8.347004 TCTTGCATAAGGTTCACAATCAATAA 57.653 30.769 0.00 0.00 34.59 1.40
16 17 7.936496 TCTTGCATAAGGTTCACAATCAATA 57.064 32.000 0.00 0.00 34.59 1.90
17 18 6.839124 TCTTGCATAAGGTTCACAATCAAT 57.161 33.333 0.00 0.00 34.59 2.57
18 19 6.294675 CCTTCTTGCATAAGGTTCACAATCAA 60.295 38.462 16.64 0.00 38.98 2.57
19 20 5.183713 CCTTCTTGCATAAGGTTCACAATCA 59.816 40.000 16.64 0.00 38.98 2.57
20 21 5.415701 TCCTTCTTGCATAAGGTTCACAATC 59.584 40.000 21.57 0.00 43.42 2.67
21 22 5.324409 TCCTTCTTGCATAAGGTTCACAAT 58.676 37.500 21.57 0.00 43.42 2.71
22 23 4.724399 TCCTTCTTGCATAAGGTTCACAA 58.276 39.130 21.57 5.15 43.42 3.33
23 24 4.365514 TCCTTCTTGCATAAGGTTCACA 57.634 40.909 21.57 5.72 43.42 3.58
24 25 4.336713 GGATCCTTCTTGCATAAGGTTCAC 59.663 45.833 25.74 17.53 43.42 3.18
25 26 4.018506 TGGATCCTTCTTGCATAAGGTTCA 60.019 41.667 25.74 19.05 43.42 3.18
26 27 4.526970 TGGATCCTTCTTGCATAAGGTTC 58.473 43.478 21.57 21.21 43.42 3.62
27 28 4.228210 TCTGGATCCTTCTTGCATAAGGTT 59.772 41.667 21.57 16.09 43.42 3.50
28 29 3.782523 TCTGGATCCTTCTTGCATAAGGT 59.217 43.478 21.57 12.77 43.42 3.50
29 30 4.102210 TCTCTGGATCCTTCTTGCATAAGG 59.898 45.833 18.15 18.15 44.17 2.69
30 31 5.070180 TCTCTCTGGATCCTTCTTGCATAAG 59.930 44.000 14.23 0.00 35.16 1.73
31 32 4.964897 TCTCTCTGGATCCTTCTTGCATAA 59.035 41.667 14.23 0.00 0.00 1.90
32 33 4.550669 TCTCTCTGGATCCTTCTTGCATA 58.449 43.478 14.23 0.00 0.00 3.14
33 34 3.382278 TCTCTCTGGATCCTTCTTGCAT 58.618 45.455 14.23 0.00 0.00 3.96
34 35 2.825223 TCTCTCTGGATCCTTCTTGCA 58.175 47.619 14.23 0.00 0.00 4.08
35 36 4.128643 CAATCTCTCTGGATCCTTCTTGC 58.871 47.826 14.23 0.00 0.00 4.01
36 37 5.356291 ACAATCTCTCTGGATCCTTCTTG 57.644 43.478 14.23 9.21 0.00 3.02
37 38 6.439487 TCTACAATCTCTCTGGATCCTTCTT 58.561 40.000 14.23 0.00 0.00 2.52
38 39 6.024563 TCTACAATCTCTCTGGATCCTTCT 57.975 41.667 14.23 0.00 0.00 2.85
39 40 6.723298 TTCTACAATCTCTCTGGATCCTTC 57.277 41.667 14.23 0.00 0.00 3.46
40 41 6.099557 CCTTTCTACAATCTCTCTGGATCCTT 59.900 42.308 14.23 0.00 0.00 3.36
41 42 5.602145 CCTTTCTACAATCTCTCTGGATCCT 59.398 44.000 14.23 0.00 0.00 3.24
42 43 5.221621 CCCTTTCTACAATCTCTCTGGATCC 60.222 48.000 4.20 4.20 0.00 3.36
43 44 5.600484 TCCCTTTCTACAATCTCTCTGGATC 59.400 44.000 0.00 0.00 0.00 3.36
44 45 5.533112 TCCCTTTCTACAATCTCTCTGGAT 58.467 41.667 0.00 0.00 0.00 3.41
45 46 4.947883 TCCCTTTCTACAATCTCTCTGGA 58.052 43.478 0.00 0.00 0.00 3.86
46 47 5.885449 ATCCCTTTCTACAATCTCTCTGG 57.115 43.478 0.00 0.00 0.00 3.86
47 48 6.780031 TCCTATCCCTTTCTACAATCTCTCTG 59.220 42.308 0.00 0.00 0.00 3.35
48 49 6.928202 TCCTATCCCTTTCTACAATCTCTCT 58.072 40.000 0.00 0.00 0.00 3.10
49 50 7.790782 ATCCTATCCCTTTCTACAATCTCTC 57.209 40.000 0.00 0.00 0.00 3.20
50 51 8.461033 ACTATCCTATCCCTTTCTACAATCTCT 58.539 37.037 0.00 0.00 0.00 3.10
51 52 8.658840 ACTATCCTATCCCTTTCTACAATCTC 57.341 38.462 0.00 0.00 0.00 2.75
52 53 7.676468 GGACTATCCTATCCCTTTCTACAATCT 59.324 40.741 0.00 0.00 32.53 2.40
53 54 7.455008 TGGACTATCCTATCCCTTTCTACAATC 59.545 40.741 0.00 0.00 37.46 2.67
54 55 7.313731 TGGACTATCCTATCCCTTTCTACAAT 58.686 38.462 0.00 0.00 37.46 2.71
55 56 6.689561 TGGACTATCCTATCCCTTTCTACAA 58.310 40.000 0.00 0.00 37.46 2.41
56 57 6.125860 ACTGGACTATCCTATCCCTTTCTACA 60.126 42.308 0.00 0.00 37.46 2.74
57 58 6.316513 ACTGGACTATCCTATCCCTTTCTAC 58.683 44.000 0.00 0.00 37.46 2.59
58 59 6.547396 ACTGGACTATCCTATCCCTTTCTA 57.453 41.667 0.00 0.00 37.46 2.10
59 60 5.426325 ACTGGACTATCCTATCCCTTTCT 57.574 43.478 0.00 0.00 37.46 2.52
60 61 7.800300 ATAACTGGACTATCCTATCCCTTTC 57.200 40.000 0.00 0.00 37.46 2.62
61 62 8.582891 AAATAACTGGACTATCCTATCCCTTT 57.417 34.615 0.00 0.00 37.46 3.11
62 63 7.794683 TGAAATAACTGGACTATCCTATCCCTT 59.205 37.037 0.00 0.00 37.46 3.95
63 64 7.313731 TGAAATAACTGGACTATCCTATCCCT 58.686 38.462 0.00 0.00 37.46 4.20
64 65 7.554959 TGAAATAACTGGACTATCCTATCCC 57.445 40.000 0.00 0.00 37.46 3.85
65 66 8.871125 TCTTGAAATAACTGGACTATCCTATCC 58.129 37.037 0.00 0.00 37.46 2.59
66 67 9.921637 CTCTTGAAATAACTGGACTATCCTATC 57.078 37.037 0.00 0.00 37.46 2.08
67 68 9.661954 TCTCTTGAAATAACTGGACTATCCTAT 57.338 33.333 0.00 0.00 37.46 2.57
68 69 8.915036 GTCTCTTGAAATAACTGGACTATCCTA 58.085 37.037 0.00 0.00 37.46 2.94
69 70 7.621683 AGTCTCTTGAAATAACTGGACTATCCT 59.378 37.037 0.00 0.00 37.46 3.24
70 71 7.787028 AGTCTCTTGAAATAACTGGACTATCC 58.213 38.462 0.00 0.00 36.96 2.59
71 72 9.092876 CAAGTCTCTTGAAATAACTGGACTATC 57.907 37.037 3.73 0.00 33.30 2.08
72 73 8.598041 ACAAGTCTCTTGAAATAACTGGACTAT 58.402 33.333 15.04 0.00 33.30 2.12
73 74 7.963532 ACAAGTCTCTTGAAATAACTGGACTA 58.036 34.615 15.04 0.00 33.30 2.59
74 75 6.831976 ACAAGTCTCTTGAAATAACTGGACT 58.168 36.000 15.04 0.00 34.80 3.85
75 76 7.012421 ACAACAAGTCTCTTGAAATAACTGGAC 59.988 37.037 15.04 0.00 0.00 4.02
76 77 7.054124 ACAACAAGTCTCTTGAAATAACTGGA 58.946 34.615 15.04 0.00 0.00 3.86
77 78 7.264373 ACAACAAGTCTCTTGAAATAACTGG 57.736 36.000 15.04 0.00 0.00 4.00
110 111 9.391006 ACGGCATTATATTTCTTTCTCAAGTTA 57.609 29.630 0.00 0.00 0.00 2.24
111 112 8.281212 ACGGCATTATATTTCTTTCTCAAGTT 57.719 30.769 0.00 0.00 0.00 2.66
112 113 7.865706 ACGGCATTATATTTCTTTCTCAAGT 57.134 32.000 0.00 0.00 0.00 3.16
113 114 8.826710 TGTACGGCATTATATTTCTTTCTCAAG 58.173 33.333 0.00 0.00 0.00 3.02
114 115 8.725405 TGTACGGCATTATATTTCTTTCTCAA 57.275 30.769 0.00 0.00 0.00 3.02
115 116 7.042051 GCTGTACGGCATTATATTTCTTTCTCA 60.042 37.037 21.95 0.00 0.00 3.27
116 117 7.171678 AGCTGTACGGCATTATATTTCTTTCTC 59.828 37.037 27.85 0.00 34.17 2.87
117 118 6.992715 AGCTGTACGGCATTATATTTCTTTCT 59.007 34.615 27.85 0.00 34.17 2.52
118 119 7.190920 AGCTGTACGGCATTATATTTCTTTC 57.809 36.000 27.85 0.00 34.17 2.62
119 120 7.067008 ACAAGCTGTACGGCATTATATTTCTTT 59.933 33.333 27.85 6.51 34.17 2.52
120 121 6.542370 ACAAGCTGTACGGCATTATATTTCTT 59.458 34.615 27.85 7.03 34.17 2.52
121 122 6.055588 ACAAGCTGTACGGCATTATATTTCT 58.944 36.000 27.85 0.48 34.17 2.52
122 123 6.300354 ACAAGCTGTACGGCATTATATTTC 57.700 37.500 27.85 0.00 34.17 2.17
123 124 6.317642 TGAACAAGCTGTACGGCATTATATTT 59.682 34.615 27.85 9.21 34.17 1.40
124 125 5.820423 TGAACAAGCTGTACGGCATTATATT 59.180 36.000 27.85 9.94 34.17 1.28
125 126 5.364778 TGAACAAGCTGTACGGCATTATAT 58.635 37.500 27.85 9.19 34.17 0.86
126 127 4.760878 TGAACAAGCTGTACGGCATTATA 58.239 39.130 27.85 7.37 34.17 0.98
127 128 3.605634 TGAACAAGCTGTACGGCATTAT 58.394 40.909 27.85 11.67 34.17 1.28
128 129 3.046968 TGAACAAGCTGTACGGCATTA 57.953 42.857 27.85 5.89 34.17 1.90
129 130 1.890876 TGAACAAGCTGTACGGCATT 58.109 45.000 27.85 18.16 34.17 3.56
130 131 1.890876 TTGAACAAGCTGTACGGCAT 58.109 45.000 27.85 14.43 34.17 4.40
131 132 1.332375 GTTTGAACAAGCTGTACGGCA 59.668 47.619 27.85 3.61 34.17 5.69
132 133 1.334689 GGTTTGAACAAGCTGTACGGC 60.335 52.381 19.39 19.39 0.00 5.68
133 134 1.944024 TGGTTTGAACAAGCTGTACGG 59.056 47.619 0.00 0.00 0.00 4.02
134 135 3.253371 CTGGTTTGAACAAGCTGTACG 57.747 47.619 0.00 0.00 0.00 3.67
141 142 9.437045 GAATAAATTTTTGCTGGTTTGAACAAG 57.563 29.630 0.00 0.00 32.93 3.16
142 143 9.171877 AGAATAAATTTTTGCTGGTTTGAACAA 57.828 25.926 0.00 0.00 0.00 2.83
143 144 8.729805 AGAATAAATTTTTGCTGGTTTGAACA 57.270 26.923 0.00 0.00 0.00 3.18
144 145 8.282592 GGAGAATAAATTTTTGCTGGTTTGAAC 58.717 33.333 0.00 0.00 0.00 3.18
145 146 7.443879 GGGAGAATAAATTTTTGCTGGTTTGAA 59.556 33.333 0.00 0.00 0.00 2.69
146 147 6.934083 GGGAGAATAAATTTTTGCTGGTTTGA 59.066 34.615 0.00 0.00 0.00 2.69
147 148 6.128580 CGGGAGAATAAATTTTTGCTGGTTTG 60.129 38.462 0.00 0.00 0.00 2.93
148 149 5.931724 CGGGAGAATAAATTTTTGCTGGTTT 59.068 36.000 0.00 0.00 0.00 3.27
149 150 5.478407 CGGGAGAATAAATTTTTGCTGGTT 58.522 37.500 0.00 0.00 0.00 3.67
150 151 4.081697 CCGGGAGAATAAATTTTTGCTGGT 60.082 41.667 0.00 0.00 0.00 4.00
151 152 4.081697 ACCGGGAGAATAAATTTTTGCTGG 60.082 41.667 6.32 3.14 32.07 4.85
152 153 5.072040 ACCGGGAGAATAAATTTTTGCTG 57.928 39.130 6.32 0.00 0.00 4.41
153 154 4.159693 GGACCGGGAGAATAAATTTTTGCT 59.840 41.667 6.32 0.00 0.00 3.91
154 155 4.081917 TGGACCGGGAGAATAAATTTTTGC 60.082 41.667 6.32 0.00 0.00 3.68
155 156 5.652994 TGGACCGGGAGAATAAATTTTTG 57.347 39.130 6.32 0.00 0.00 2.44
156 157 5.778241 ACTTGGACCGGGAGAATAAATTTTT 59.222 36.000 6.32 0.00 0.00 1.94
157 158 5.330233 ACTTGGACCGGGAGAATAAATTTT 58.670 37.500 6.32 0.00 0.00 1.82
158 159 4.930696 ACTTGGACCGGGAGAATAAATTT 58.069 39.130 6.32 0.00 0.00 1.82
159 160 4.227527 AGACTTGGACCGGGAGAATAAATT 59.772 41.667 6.32 0.00 0.00 1.82
160 161 3.780850 AGACTTGGACCGGGAGAATAAAT 59.219 43.478 6.32 0.00 0.00 1.40
161 162 3.178865 AGACTTGGACCGGGAGAATAAA 58.821 45.455 6.32 0.00 0.00 1.40
162 163 2.764572 GAGACTTGGACCGGGAGAATAA 59.235 50.000 6.32 0.00 0.00 1.40
163 164 2.024273 AGAGACTTGGACCGGGAGAATA 60.024 50.000 6.32 0.00 0.00 1.75
164 165 1.196012 GAGACTTGGACCGGGAGAAT 58.804 55.000 6.32 0.00 0.00 2.40
165 166 0.114560 AGAGACTTGGACCGGGAGAA 59.885 55.000 6.32 0.00 0.00 2.87
166 167 0.997363 TAGAGACTTGGACCGGGAGA 59.003 55.000 6.32 0.00 0.00 3.71
167 168 1.683917 CATAGAGACTTGGACCGGGAG 59.316 57.143 6.32 0.06 0.00 4.30
168 169 1.006758 ACATAGAGACTTGGACCGGGA 59.993 52.381 6.32 0.00 0.00 5.14
169 170 1.409427 GACATAGAGACTTGGACCGGG 59.591 57.143 6.32 0.00 0.00 5.73
170 171 1.409427 GGACATAGAGACTTGGACCGG 59.591 57.143 0.00 0.00 0.00 5.28
171 172 2.100197 TGGACATAGAGACTTGGACCG 58.900 52.381 0.00 0.00 0.00 4.79
172 173 3.260884 TGTTGGACATAGAGACTTGGACC 59.739 47.826 0.00 0.00 0.00 4.46
173 174 4.499183 CTGTTGGACATAGAGACTTGGAC 58.501 47.826 0.00 0.00 0.00 4.02
174 175 3.515502 CCTGTTGGACATAGAGACTTGGA 59.484 47.826 0.00 0.00 34.57 3.53
175 176 3.866651 CCTGTTGGACATAGAGACTTGG 58.133 50.000 0.00 0.00 34.57 3.61
176 177 3.265791 GCCTGTTGGACATAGAGACTTG 58.734 50.000 0.00 0.00 34.57 3.16
177 178 2.237392 GGCCTGTTGGACATAGAGACTT 59.763 50.000 0.00 0.00 42.34 3.01
178 179 1.834263 GGCCTGTTGGACATAGAGACT 59.166 52.381 0.00 0.00 42.34 3.24
179 180 1.134371 GGGCCTGTTGGACATAGAGAC 60.134 57.143 0.84 0.00 45.45 3.36
180 181 1.204146 GGGCCTGTTGGACATAGAGA 58.796 55.000 0.84 0.00 45.45 3.10
181 182 0.181350 GGGGCCTGTTGGACATAGAG 59.819 60.000 0.84 0.00 45.45 2.43
182 183 1.622607 CGGGGCCTGTTGGACATAGA 61.623 60.000 3.48 0.00 45.45 1.98
183 184 1.153168 CGGGGCCTGTTGGACATAG 60.153 63.158 3.48 0.00 45.45 2.23
184 185 2.994699 CGGGGCCTGTTGGACATA 59.005 61.111 3.48 0.00 45.45 2.29
185 186 4.740822 GCGGGGCCTGTTGGACAT 62.741 66.667 15.16 0.00 45.45 3.06
187 188 3.262448 TTAGCGGGGCCTGTTGGAC 62.262 63.158 15.16 0.00 41.93 4.02
188 189 2.931105 TTAGCGGGGCCTGTTGGA 60.931 61.111 15.16 0.00 34.57 3.53
189 190 2.750237 GTTAGCGGGGCCTGTTGG 60.750 66.667 15.16 0.00 0.00 3.77
190 191 3.124921 CGTTAGCGGGGCCTGTTG 61.125 66.667 15.16 0.00 0.00 3.33
191 192 3.186656 AACGTTAGCGGGGCCTGTT 62.187 57.895 15.16 11.12 43.45 3.16
192 193 3.633116 AACGTTAGCGGGGCCTGT 61.633 61.111 15.16 3.40 43.45 4.00
193 194 3.124921 CAACGTTAGCGGGGCCTG 61.125 66.667 8.39 8.39 43.45 4.85
194 195 4.404098 CCAACGTTAGCGGGGCCT 62.404 66.667 0.84 0.00 43.45 5.19
195 196 4.397832 TCCAACGTTAGCGGGGCC 62.398 66.667 0.00 0.00 43.45 5.80
196 197 3.122971 GTCCAACGTTAGCGGGGC 61.123 66.667 0.00 0.00 43.45 5.80
197 198 1.740296 CAGTCCAACGTTAGCGGGG 60.740 63.158 0.00 4.77 43.45 5.73
198 199 1.740296 CCAGTCCAACGTTAGCGGG 60.740 63.158 0.00 0.00 43.45 6.13
199 200 1.012486 GTCCAGTCCAACGTTAGCGG 61.012 60.000 0.00 0.00 43.45 5.52
200 201 0.038526 AGTCCAGTCCAACGTTAGCG 60.039 55.000 0.00 0.00 44.93 4.26
201 202 1.429463 CAGTCCAGTCCAACGTTAGC 58.571 55.000 0.00 0.00 0.00 3.09
202 203 1.616865 TCCAGTCCAGTCCAACGTTAG 59.383 52.381 0.00 0.00 0.00 2.34
203 204 1.342174 GTCCAGTCCAGTCCAACGTTA 59.658 52.381 0.00 0.00 0.00 3.18
204 205 0.106149 GTCCAGTCCAGTCCAACGTT 59.894 55.000 0.00 0.00 0.00 3.99
205 206 0.759436 AGTCCAGTCCAGTCCAACGT 60.759 55.000 0.00 0.00 0.00 3.99
206 207 0.319900 CAGTCCAGTCCAGTCCAACG 60.320 60.000 0.00 0.00 0.00 4.10
207 208 0.035458 CCAGTCCAGTCCAGTCCAAC 59.965 60.000 0.00 0.00 0.00 3.77
246 247 2.654079 CGGACCAGCTTGCTCCTCT 61.654 63.158 0.00 0.00 0.00 3.69
247 248 2.125350 CGGACCAGCTTGCTCCTC 60.125 66.667 0.00 0.00 0.00 3.71
248 249 2.925170 ACGGACCAGCTTGCTCCT 60.925 61.111 0.00 0.00 0.00 3.69
249 250 2.743928 CACGGACCAGCTTGCTCC 60.744 66.667 0.00 0.00 0.00 4.70
279 285 6.357367 ACTTGACTGGACTTGAATTACACTT 58.643 36.000 0.00 0.00 0.00 3.16
281 287 5.179555 GGACTTGACTGGACTTGAATTACAC 59.820 44.000 0.00 0.00 0.00 2.90
282 288 5.305585 GGACTTGACTGGACTTGAATTACA 58.694 41.667 0.00 0.00 0.00 2.41
283 289 4.695928 GGGACTTGACTGGACTTGAATTAC 59.304 45.833 0.00 0.00 0.00 1.89
284 290 4.263331 GGGGACTTGACTGGACTTGAATTA 60.263 45.833 0.00 0.00 0.00 1.40
285 291 3.498661 GGGGACTTGACTGGACTTGAATT 60.499 47.826 0.00 0.00 0.00 2.17
286 292 2.040412 GGGGACTTGACTGGACTTGAAT 59.960 50.000 0.00 0.00 0.00 2.57
288 294 1.056660 GGGGACTTGACTGGACTTGA 58.943 55.000 0.00 0.00 0.00 3.02
289 295 1.059913 AGGGGACTTGACTGGACTTG 58.940 55.000 0.00 0.00 37.44 3.16
290 296 2.715763 TAGGGGACTTGACTGGACTT 57.284 50.000 0.00 0.00 43.67 3.01
291 297 2.715763 TTAGGGGACTTGACTGGACT 57.284 50.000 0.00 0.00 43.67 3.85
292 298 3.782656 TTTTAGGGGACTTGACTGGAC 57.217 47.619 0.00 0.00 43.67 4.02
312 318 3.317993 CGTTGGACTTGGACTGGATTTTT 59.682 43.478 0.00 0.00 0.00 1.94
313 319 2.884639 CGTTGGACTTGGACTGGATTTT 59.115 45.455 0.00 0.00 0.00 1.82
314 320 2.105821 TCGTTGGACTTGGACTGGATTT 59.894 45.455 0.00 0.00 0.00 2.17
315 321 1.697432 TCGTTGGACTTGGACTGGATT 59.303 47.619 0.00 0.00 0.00 3.01
316 322 1.002087 GTCGTTGGACTTGGACTGGAT 59.998 52.381 0.00 0.00 40.15 3.41
353 359 4.828296 GGTCATGCAGGGGCCAGG 62.828 72.222 4.39 0.00 40.13 4.45
361 367 2.433145 AGTGTCGCGGTCATGCAG 60.433 61.111 6.13 0.00 34.15 4.41
364 370 1.132199 GTACGAGTGTCGCGGTCATG 61.132 60.000 6.13 3.77 45.12 3.07
365 371 1.136147 GTACGAGTGTCGCGGTCAT 59.864 57.895 6.13 0.00 45.12 3.06
366 372 1.904852 GAGTACGAGTGTCGCGGTCA 61.905 60.000 6.13 3.16 45.12 4.02
439 445 3.199677 TCGCAAAGAAAAAGACGAAGGA 58.800 40.909 0.00 0.00 0.00 3.36
565 581 1.257675 AGCGTTTTTCACATTTTGCGC 59.742 42.857 0.00 0.00 43.29 6.09
577 594 1.562575 CCTGTACGGCGAGCGTTTTT 61.563 55.000 16.62 0.00 0.00 1.94
591 608 0.107897 ATGCACGGCGATTTCCTGTA 60.108 50.000 16.62 0.00 0.00 2.74
596 613 0.028902 GGGTTATGCACGGCGATTTC 59.971 55.000 16.62 0.00 0.00 2.17
601 618 2.125310 TGAGGGTTATGCACGGCG 60.125 61.111 4.80 4.80 0.00 6.46
605 622 1.165270 GGTGTGTGAGGGTTATGCAC 58.835 55.000 0.00 0.00 0.00 4.57
608 625 1.001520 TGTCGGTGTGTGAGGGTTATG 59.998 52.381 0.00 0.00 0.00 1.90
609 626 1.001633 GTGTCGGTGTGTGAGGGTTAT 59.998 52.381 0.00 0.00 0.00 1.89
701 726 8.630054 AAATTGCTTTGGAATACTGTACTGTA 57.370 30.769 14.12 14.12 0.00 2.74
702 727 7.309194 GGAAATTGCTTTGGAATACTGTACTGT 60.309 37.037 10.46 10.46 0.00 3.55
705 730 6.027749 CGGAAATTGCTTTGGAATACTGTAC 58.972 40.000 0.00 0.00 0.00 2.90
706 731 5.124776 CCGGAAATTGCTTTGGAATACTGTA 59.875 40.000 0.00 0.00 0.00 2.74
707 732 4.082245 CCGGAAATTGCTTTGGAATACTGT 60.082 41.667 0.00 0.00 0.00 3.55
709 734 3.447229 CCCGGAAATTGCTTTGGAATACT 59.553 43.478 0.73 0.00 0.00 2.12
710 735 3.780902 CCCGGAAATTGCTTTGGAATAC 58.219 45.455 0.73 0.00 0.00 1.89
792 818 7.519032 AATCTATGGAAGTTCAAAACGGAAA 57.481 32.000 5.01 0.00 36.23 3.13
793 819 7.447238 AGAAATCTATGGAAGTTCAAAACGGAA 59.553 33.333 5.01 0.00 36.23 4.30
794 820 6.940298 AGAAATCTATGGAAGTTCAAAACGGA 59.060 34.615 5.01 0.00 36.23 4.69
795 821 7.145932 AGAAATCTATGGAAGTTCAAAACGG 57.854 36.000 5.01 0.00 36.23 4.44
909 2051 1.134640 CGTATCGGTGTGGGGATTTCA 60.135 52.381 0.00 0.00 0.00 2.69
1176 2323 0.322975 AGATCACGAAGCTGTTGCCT 59.677 50.000 0.00 0.00 40.80 4.75
1341 2488 3.575965 ATTCAACTCAAAATCACCCGC 57.424 42.857 0.00 0.00 0.00 6.13
1342 2489 4.022416 TCCAATTCAACTCAAAATCACCCG 60.022 41.667 0.00 0.00 0.00 5.28
1375 2523 0.179000 AGGAAAGATGCTCCGCGATT 59.821 50.000 8.23 0.00 38.08 3.34
1503 2653 6.757897 AACTGGATTCAAGCGAAAATGATA 57.242 33.333 0.00 0.00 34.01 2.15
1571 2721 6.841443 TTGAAAATGTATTGCCACAAGTTG 57.159 33.333 0.00 0.00 30.84 3.16
1588 2738 4.882427 TCCGCATATTACCCGAATTGAAAA 59.118 37.500 0.00 0.00 0.00 2.29
1784 2935 1.137086 GCCAATAGAACTCGAGGCAGA 59.863 52.381 18.41 0.00 41.63 4.26
1785 2936 1.134699 TGCCAATAGAACTCGAGGCAG 60.135 52.381 18.41 0.00 46.25 4.85
1791 2942 2.004583 TTCCGTGCCAATAGAACTCG 57.995 50.000 0.00 0.00 0.00 4.18
1832 2983 9.865321 CCAAATATGCAGAATCCAAAATATAGG 57.135 33.333 0.00 0.00 0.00 2.57
1890 3041 8.540388 ACCACATTAAGTAGCTTCATTCTCTTA 58.460 33.333 0.00 0.00 0.00 2.10
2016 3168 6.492007 AATGCTCACACAGAAGATTAACTG 57.508 37.500 0.00 0.00 39.65 3.16
2079 3231 4.980434 GCACAGCATCATTCATCAAATACC 59.020 41.667 0.00 0.00 0.00 2.73
2136 3288 2.434428 CTGACTGCAAGAATCTGGCTT 58.566 47.619 11.36 0.00 37.43 4.35
2248 3400 7.442364 TCTTTAAGAGCATGTATACAATCCAGC 59.558 37.037 10.14 9.17 0.00 4.85
2434 3588 6.715280 AGAGAACATAGAGAGCATCCAAAAA 58.285 36.000 0.00 0.00 33.66 1.94
2435 3589 6.305272 AGAGAACATAGAGAGCATCCAAAA 57.695 37.500 0.00 0.00 33.66 2.44
2517 3671 9.947433 TCAACTTTACGAAATCCCTAGATAAAA 57.053 29.630 0.00 0.00 30.42 1.52
2518 3672 9.374838 GTCAACTTTACGAAATCCCTAGATAAA 57.625 33.333 0.00 0.00 30.42 1.40
2585 3739 6.409524 TGATTTTCAGAAGATGCTTTTGGT 57.590 33.333 0.00 0.00 0.00 3.67
2769 3923 0.671251 GGTAGAGCCTGAGATCCACG 59.329 60.000 0.00 0.00 0.00 4.94
3028 4182 2.241176 ACTGAATAATTTCGGCCCCTGA 59.759 45.455 0.00 0.00 41.22 3.86
3133 4287 0.819582 ATGGGCATGTTAAGTGCAGC 59.180 50.000 13.11 0.00 44.25 5.25
3176 4330 0.323816 TTGTGTGTTGAGGTTGCCCA 60.324 50.000 0.00 0.00 0.00 5.36
3179 4333 1.102978 ACCTTGTGTGTTGAGGTTGC 58.897 50.000 0.00 0.00 40.83 4.17
3318 4472 0.252421 TCTGACAGTCCTGCCCTGAT 60.252 55.000 1.59 0.00 34.04 2.90
3398 4552 7.903995 TTGCAGAAAAAGAACAGAAACATTT 57.096 28.000 0.00 0.00 0.00 2.32
3424 4581 6.041409 AGCTACATAGAATACAGTCTGCATGT 59.959 38.462 0.00 0.00 33.44 3.21
3468 4627 5.621422 CACATGAAGTGCATAGTGTGTTAC 58.379 41.667 0.00 0.00 42.15 2.50
3470 4629 4.754372 CACATGAAGTGCATAGTGTGTT 57.246 40.909 0.00 0.00 42.15 3.32
3505 4664 8.870075 AAACTTTGCAAGATCCTACTAATCTT 57.130 30.769 0.00 0.00 42.74 2.40
3519 4678 7.934457 AGATAGCATGGTATAAACTTTGCAAG 58.066 34.615 17.08 0.00 36.52 4.01
3540 4699 6.209774 TCCCAGACATTTAAGGAAGGAGATA 58.790 40.000 0.00 0.00 0.00 1.98
3585 4765 6.264292 ACAGAACACCATAACAACATAGCAAA 59.736 34.615 0.00 0.00 0.00 3.68
3586 4766 5.767665 ACAGAACACCATAACAACATAGCAA 59.232 36.000 0.00 0.00 0.00 3.91
3587 4767 5.312895 ACAGAACACCATAACAACATAGCA 58.687 37.500 0.00 0.00 0.00 3.49
3589 4769 6.072508 AGCAACAGAACACCATAACAACATAG 60.073 38.462 0.00 0.00 0.00 2.23
3645 4919 5.981088 TGGCATCAGCTGAAATAAGAAAA 57.019 34.783 22.50 0.00 41.70 2.29
3783 5204 0.318955 ACAGCTGCATTTCGTTTGGC 60.319 50.000 15.27 0.00 0.00 4.52
3785 5206 0.780002 GCACAGCTGCATTTCGTTTG 59.220 50.000 15.27 1.87 43.62 2.93
3786 5207 3.184094 GCACAGCTGCATTTCGTTT 57.816 47.368 15.27 0.00 43.62 3.60
3804 5225 6.591448 TGATGACATTAGTGACTGCTAAAGTG 59.409 38.462 0.00 0.00 40.07 3.16
3853 5276 5.013547 TCTTTTGTCCTTGTTGGTGAAGAA 58.986 37.500 0.00 0.00 37.07 2.52
3858 5281 3.287222 TCCTCTTTTGTCCTTGTTGGTG 58.713 45.455 0.00 0.00 37.07 4.17
3859 5282 3.662759 TCCTCTTTTGTCCTTGTTGGT 57.337 42.857 0.00 0.00 37.07 3.67
3868 5291 2.751259 TCTGCATGCATCCTCTTTTGTC 59.249 45.455 22.97 0.00 0.00 3.18
3898 5321 0.474184 CATCTAAATGCTCCCCGGGT 59.526 55.000 21.85 0.17 0.00 5.28
3901 5324 2.918712 AGACATCTAAATGCTCCCCG 57.081 50.000 0.00 0.00 36.26 5.73
3904 5327 7.056844 ACCTAGTTAGACATCTAAATGCTCC 57.943 40.000 10.97 0.00 39.84 4.70
3977 5492 0.179468 GGGCAGCAACCTAATACCGA 59.821 55.000 0.00 0.00 0.00 4.69
3978 5493 0.180406 AGGGCAGCAACCTAATACCG 59.820 55.000 0.00 0.00 36.32 4.02
3979 5494 2.437085 AAGGGCAGCAACCTAATACC 57.563 50.000 0.00 0.00 37.35 2.73
4017 5535 4.081254 TGACTAAGAGATGCAGCATGAAGT 60.081 41.667 14.22 8.36 39.69 3.01
4018 5536 4.439968 TGACTAAGAGATGCAGCATGAAG 58.560 43.478 14.22 5.17 39.69 3.02
4020 5538 4.476628 TTGACTAAGAGATGCAGCATGA 57.523 40.909 14.22 0.00 39.69 3.07
4021 5539 4.201891 GGTTTGACTAAGAGATGCAGCATG 60.202 45.833 14.22 0.00 40.87 4.06
4022 5540 3.944015 GGTTTGACTAAGAGATGCAGCAT 59.056 43.478 7.91 7.91 0.00 3.79
4023 5541 3.338249 GGTTTGACTAAGAGATGCAGCA 58.662 45.455 4.07 0.00 0.00 4.41
4026 5544 2.565391 TCCGGTTTGACTAAGAGATGCA 59.435 45.455 0.00 0.00 0.00 3.96
4027 5545 2.930682 GTCCGGTTTGACTAAGAGATGC 59.069 50.000 0.00 0.00 32.39 3.91
4028 5546 4.457834 AGTCCGGTTTGACTAAGAGATG 57.542 45.455 0.00 0.00 43.65 2.90
4029 5547 4.527038 TGAAGTCCGGTTTGACTAAGAGAT 59.473 41.667 0.00 0.00 44.68 2.75
4030 5548 3.893200 TGAAGTCCGGTTTGACTAAGAGA 59.107 43.478 0.00 0.00 44.68 3.10
4032 5550 3.385433 TGTGAAGTCCGGTTTGACTAAGA 59.615 43.478 0.00 0.00 44.68 2.10
4033 5551 3.724374 TGTGAAGTCCGGTTTGACTAAG 58.276 45.455 0.00 0.00 44.68 2.18
4034 5552 3.823281 TGTGAAGTCCGGTTTGACTAA 57.177 42.857 0.00 0.00 44.68 2.24
4035 5553 5.670792 ATATGTGAAGTCCGGTTTGACTA 57.329 39.130 0.00 0.00 44.68 2.59
4036 5554 7.189903 ACAAATATGTGAAGTCCGGTTTGACT 61.190 38.462 12.19 1.11 42.05 3.41
4037 5555 5.048991 ACAAATATGTGAAGTCCGGTTTGAC 60.049 40.000 12.19 8.45 38.69 3.18
4038 5556 5.067273 ACAAATATGTGAAGTCCGGTTTGA 58.933 37.500 12.19 0.00 38.69 2.69
4039 5557 5.371115 ACAAATATGTGAAGTCCGGTTTG 57.629 39.130 0.00 3.22 38.69 2.93
4040 5558 6.072342 GGTTACAAATATGTGAAGTCCGGTTT 60.072 38.462 0.00 0.00 40.84 3.27
4041 5559 5.413523 GGTTACAAATATGTGAAGTCCGGTT 59.586 40.000 0.00 0.00 40.84 4.44
4042 5560 4.939439 GGTTACAAATATGTGAAGTCCGGT 59.061 41.667 0.00 0.00 40.84 5.28
4043 5561 5.183228 AGGTTACAAATATGTGAAGTCCGG 58.817 41.667 0.00 0.00 40.84 5.14
4044 5562 6.148811 ACAAGGTTACAAATATGTGAAGTCCG 59.851 38.462 0.00 0.00 40.84 4.79
4045 5563 7.448748 ACAAGGTTACAAATATGTGAAGTCC 57.551 36.000 0.00 0.00 40.84 3.85
4046 5564 9.744468 AAAACAAGGTTACAAATATGTGAAGTC 57.256 29.630 0.00 0.00 40.84 3.01
4047 5565 9.744468 GAAAACAAGGTTACAAATATGTGAAGT 57.256 29.630 0.00 0.00 40.84 3.01
4048 5566 8.901748 CGAAAACAAGGTTACAAATATGTGAAG 58.098 33.333 0.00 0.00 40.84 3.02
4049 5567 8.622157 TCGAAAACAAGGTTACAAATATGTGAA 58.378 29.630 0.00 0.00 40.84 3.18
4050 5568 8.155821 TCGAAAACAAGGTTACAAATATGTGA 57.844 30.769 0.00 0.00 40.84 3.58
4051 5569 8.789881 TTCGAAAACAAGGTTACAAATATGTG 57.210 30.769 0.00 0.00 40.84 3.21
4073 5591 5.052481 TCATATCAACCAAGCAGATCTTCG 58.948 41.667 0.00 0.00 31.27 3.79
4077 5595 6.630444 ACATTCATATCAACCAAGCAGATC 57.370 37.500 0.00 0.00 0.00 2.75
4079 5597 8.523915 AATAACATTCATATCAACCAAGCAGA 57.476 30.769 0.00 0.00 0.00 4.26
4101 5619 8.605325 AACCTAGCTCCTACTAGAACAAAATA 57.395 34.615 0.00 0.00 41.92 1.40
4137 5658 9.612620 CCAACTGATCTTTGTAAAATTAGTCAC 57.387 33.333 0.00 0.00 0.00 3.67
4157 5678 4.927425 CAGCAAAATGATTCCTTCCAACTG 59.073 41.667 0.00 0.00 0.00 3.16
4161 5682 4.706476 CCTACAGCAAAATGATTCCTTCCA 59.294 41.667 0.00 0.00 0.00 3.53
4192 5714 5.652994 ACTGAGTCAGTAGGAGAACAATC 57.347 43.478 24.36 0.00 43.46 2.67
4222 5745 0.462759 GATCACCCGGAAGCTGAAGG 60.463 60.000 0.73 0.00 0.00 3.46
4223 5746 0.250234 TGATCACCCGGAAGCTGAAG 59.750 55.000 0.73 0.00 0.00 3.02
4233 5756 2.838736 CCTCCATACTTTGATCACCCG 58.161 52.381 0.00 0.00 0.00 5.28
4292 5815 0.034616 ACTCTGAGCACAACTCCTGC 59.965 55.000 4.19 0.00 45.61 4.85
4296 5819 1.269309 ACGACACTCTGAGCACAACTC 60.269 52.381 4.19 0.00 46.45 3.01
4312 5835 3.364023 GCATTGCCATACGAGTATACGAC 59.636 47.826 0.00 0.00 37.03 4.34
4313 5836 3.254903 AGCATTGCCATACGAGTATACGA 59.745 43.478 4.70 0.00 37.03 3.43
4314 5837 3.575630 AGCATTGCCATACGAGTATACG 58.424 45.455 4.70 0.00 39.31 3.06
4316 5839 3.504520 TCGAGCATTGCCATACGAGTATA 59.495 43.478 4.70 0.00 0.00 1.47
4317 5840 2.296190 TCGAGCATTGCCATACGAGTAT 59.704 45.455 4.70 0.00 0.00 2.12
4318 5841 1.679153 TCGAGCATTGCCATACGAGTA 59.321 47.619 4.70 0.00 0.00 2.59
4319 5842 0.459899 TCGAGCATTGCCATACGAGT 59.540 50.000 4.70 0.00 0.00 4.18
4320 5843 1.570813 TTCGAGCATTGCCATACGAG 58.429 50.000 4.70 0.00 0.00 4.18
4327 5851 2.927553 AATGTCTTTCGAGCATTGCC 57.072 45.000 4.70 0.00 32.36 4.52
4392 5917 0.109132 GCGCAAAAATCCCTGTCCTG 60.109 55.000 0.30 0.00 0.00 3.86
4432 5958 5.237815 TCAGTTGTTGGCTATTCTACTGTG 58.762 41.667 13.10 0.00 36.72 3.66
4457 5984 2.838386 TATACACCGAGCGAGTGAAC 57.162 50.000 15.02 0.00 38.63 3.18
4524 6051 5.095490 GGAACATTACATTTTCGCTGGAAG 58.905 41.667 0.00 0.00 32.80 3.46
4560 6087 2.095263 ACGCGTACTAGAAAACCGCTTA 60.095 45.455 11.67 0.00 42.01 3.09
4585 6112 3.379372 TGTACCCTGCACGTAGATAAGAC 59.621 47.826 0.00 0.00 0.00 3.01
4587 6114 4.585955 ATGTACCCTGCACGTAGATAAG 57.414 45.455 0.00 0.00 0.00 1.73
4592 6119 2.286831 CGTCTATGTACCCTGCACGTAG 60.287 54.545 0.00 0.00 37.01 3.51
4605 6132 1.344763 GCCATAGCTTCCCGTCTATGT 59.655 52.381 0.00 0.00 40.10 2.29
4609 6136 1.739338 CTCGCCATAGCTTCCCGTCT 61.739 60.000 0.00 0.00 36.60 4.18
4617 6144 0.533755 GCATGGTTCTCGCCATAGCT 60.534 55.000 0.00 0.00 46.71 3.32
4623 6151 2.870372 GTGTGCATGGTTCTCGCC 59.130 61.111 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.