AutoCloner

Multiple sequence alignment - TraesCS4D01G239400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G239400	chr4D	100.000	3195	0	0	1	3195	401524060	401527254	0.000000e+00	5901.0
1	TraesCS4D01G239400	chr4D	95.427	831	26	5	1	829	346281955	346281135	0.000000e+00	1314.0
2	TraesCS4D01G239400	chr4A	93.659	1640	48	17	827	2433	59268653	59270269	0.000000e+00	2401.0
3	TraesCS4D01G239400	chr4A	78.763	485	90	11	1549	2025	578383004	578382525	2.390000e-81	313.0
4	TraesCS4D01G239400	chr4B	93.333	1530	51	18	828	2333	496523841	496525343	0.000000e+00	2213.0
5	TraesCS4D01G239400	chr4B	100.000	36	0	0	2396	2431	496525343	496525378	2.060000e-07	67.6
6	TraesCS4D01G239400	chr6D	97.222	828	16	4	1	826	365438851	365439673	0.000000e+00	1395.0
7	TraesCS4D01G239400	chr6D	96.527	835	20	5	1	833	51478703	51477876	0.000000e+00	1373.0
8	TraesCS4D01G239400	chr6D	95.699	837	22	6	1	829	340208630	340209460	0.000000e+00	1334.0
9	TraesCS4D01G239400	chr6D	95.585	838	24	6	1	830	237093459	237094291	0.000000e+00	1330.0
10	TraesCS4D01G239400	chr6D	85.965	57	6	2	3001	3057	18531184	18531238	3.440000e-05	60.2
11	TraesCS4D01G239400	chr7D	96.510	831	19	5	1	826	106887850	106887025	0.000000e+00	1365.0
12	TraesCS4D01G239400	chr7D	83.799	716	90	18	2468	3172	488126211	488125511	0.000000e+00	656.0
13	TraesCS4D01G239400	chr1D	96.261	829	24	4	1	827	398923427	398922604	0.000000e+00	1352.0
14	TraesCS4D01G239400	chr3D	95.899	829	27	4	1	827	115944495	115943672	0.000000e+00	1336.0
15	TraesCS4D01G239400	chr2D	95.657	829	24	7	1	826	606062259	606061440	0.000000e+00	1321.0
16	TraesCS4D01G239400	chr6A	83.255	639	74	15	2573	3192	334510197	334510821	1.000000e-154	556.0
17	TraesCS4D01G239400	chr6A	81.696	672	92	22	2453	3108	528928410	528927754	6.070000e-147	531.0
18	TraesCS4D01G239400	chr7B	79.573	656	70	29	2549	3195	453763767	453764367	8.250000e-111	411.0
19	TraesCS4D01G239400	chrUn	84.241	349	44	8	2651	2993	50986519	50986862	2.380000e-86	329.0
20	TraesCS4D01G239400	chrUn	89.655	203	11	5	2470	2668	50986311	50986507	1.900000e-62	250.0
21	TraesCS4D01G239400	chr2B	94.286	35	1	1	3009	3043	599823093	599823126	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G239400	chr4D	401524060	401527254	3194	False	5901.0	5901	100.0000	1	3195	1	chr4D.!!$F1	3194
1	TraesCS4D01G239400	chr4D	346281135	346281955	820	True	1314.0	1314	95.4270	1	829	1	chr4D.!!$R1	828
2	TraesCS4D01G239400	chr4A	59268653	59270269	1616	False	2401.0	2401	93.6590	827	2433	1	chr4A.!!$F1	1606
3	TraesCS4D01G239400	chr4B	496523841	496525378	1537	False	1140.3	2213	96.6665	828	2431	2	chr4B.!!$F1	1603
4	TraesCS4D01G239400	chr6D	365438851	365439673	822	False	1395.0	1395	97.2220	1	826	1	chr6D.!!$F4	825
5	TraesCS4D01G239400	chr6D	51477876	51478703	827	True	1373.0	1373	96.5270	1	833	1	chr6D.!!$R1	832
6	TraesCS4D01G239400	chr6D	340208630	340209460	830	False	1334.0	1334	95.6990	1	829	1	chr6D.!!$F3	828
7	TraesCS4D01G239400	chr6D	237093459	237094291	832	False	1330.0	1330	95.5850	1	830	1	chr6D.!!$F2	829
8	TraesCS4D01G239400	chr7D	106887025	106887850	825	True	1365.0	1365	96.5100	1	826	1	chr7D.!!$R1	825
9	TraesCS4D01G239400	chr7D	488125511	488126211	700	True	656.0	656	83.7990	2468	3172	1	chr7D.!!$R2	704
10	TraesCS4D01G239400	chr1D	398922604	398923427	823	True	1352.0	1352	96.2610	1	827	1	chr1D.!!$R1	826
11	TraesCS4D01G239400	chr3D	115943672	115944495	823	True	1336.0	1336	95.8990	1	827	1	chr3D.!!$R1	826
12	TraesCS4D01G239400	chr2D	606061440	606062259	819	True	1321.0	1321	95.6570	1	826	1	chr2D.!!$R1	825
13	TraesCS4D01G239400	chr6A	334510197	334510821	624	False	556.0	556	83.2550	2573	3192	1	chr6A.!!$F1	619
14	TraesCS4D01G239400	chr6A	528927754	528928410	656	True	531.0	531	81.6960	2453	3108	1	chr6A.!!$R1	655
15	TraesCS4D01G239400	chr7B	453763767	453764367	600	False	411.0	411	79.5730	2549	3195	1	chr7B.!!$F1	646
16	TraesCS4D01G239400	chrUn	50986311	50986862	551	False	289.5	329	86.9480	2470	2993	2	chrUn.!!$F1	523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
606	618	1.651987	GACTAGGCGCTGCACATTAA	58.348	50.0	7.64	0.0	0.0	1.40	F
1090	1125	0.334676	CACCTCACCTCTCCTCTCCT	59.665	60.0	0.00	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2117	2169	0.829333	TACTAATTAACCGGCGGGCA	59.171	50.0	31.78	14.74	36.48	5.36	R
2906	3015	0.179084	CGAGGGATGCATTGTACCGT	60.179	55.0	0.00	0.00	0.00	4.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
110	112	6.964807	TCAAAGCATATGTATCCAAAGCAT	57.035	33.333	4.29	0.00	0.00	3.79
181	183	9.309224	AGGCCTACTTCATACAAATAACTTTTT	57.691	29.630	1.29	0.00	0.00	1.94
424	426	4.939255	AGGATGGATTGGTGAAGAAATGT	58.061	39.130	0.00	0.00	0.00	2.71
588	600	2.265739	CAGTGCAGCGCCTAAGGA	59.734	61.111	2.29	0.00	0.00	3.36
606	618	1.651987	GACTAGGCGCTGCACATTAA	58.348	50.000	7.64	0.00	0.00	1.40
698	710	2.362632	AACGCCCTCGAGCTAGGT	60.363	61.111	6.99	0.00	39.41	3.08
761	774	3.699538	ACAAAAAGTCAGGGGAGTGAAAC	59.300	43.478	0.00	0.00	0.00	2.78
1077	1108	2.529136	CCTCACCCACCCACCTCA	60.529	66.667	0.00	0.00	0.00	3.86
1082	1117	2.203998	CCCACCCACCTCACCTCT	60.204	66.667	0.00	0.00	0.00	3.69
1090	1125	0.334676	CACCTCACCTCTCCTCTCCT	59.665	60.000	0.00	0.00	0.00	3.69
1337	1389	4.202196	GCGCTCAAGCTCTTCGCG	62.202	66.667	0.00	0.00	45.59	5.87
1388	1440	2.402305	GAAGCCGAGATACTCATGCTG	58.598	52.381	11.52	0.00	37.96	4.41
2140	2192	2.546584	CCCGCCGGTTAATTAGTAGGAC	60.547	54.545	1.90	0.00	0.00	3.85
2141	2193	2.101249	CCGCCGGTTAATTAGTAGGACA	59.899	50.000	1.90	0.00	0.00	4.02
2142	2194	3.378339	CGCCGGTTAATTAGTAGGACAG	58.622	50.000	1.90	0.00	0.00	3.51
2143	2195	3.181483	CGCCGGTTAATTAGTAGGACAGT	60.181	47.826	1.90	0.00	0.00	3.55
2144	2196	4.678840	CGCCGGTTAATTAGTAGGACAGTT	60.679	45.833	1.90	0.00	0.00	3.16
2227	2284	2.050691	CATGTGGCGTTTTCCTTTTCG	58.949	47.619	0.00	0.00	0.00	3.46
2228	2285	1.380524	TGTGGCGTTTTCCTTTTCGA	58.619	45.000	0.00	0.00	0.00	3.71
2300	2361	6.302269	AGAGACAGTTTTGAGAATTGATGGT	58.698	36.000	0.00	0.00	0.00	3.55
2333	2394	8.599055	TCATCAGAATCAGAAGCATAACATAC	57.401	34.615	0.00	0.00	0.00	2.39
2336	2397	5.755375	CAGAATCAGAAGCATAACATACGGT	59.245	40.000	0.00	0.00	0.00	4.83
2392	2454	9.661563	TGTTTAAGGAAATTTCTCGAGCTATAA	57.338	29.630	17.42	0.00	0.00	0.98
2433	2495	0.535335	TCCTATCGGGAACAGCACAC	59.465	55.000	0.00	0.00	41.91	3.82
2434	2496	0.249120	CCTATCGGGAACAGCACACA	59.751	55.000	0.00	0.00	37.23	3.72
2435	2497	1.359848	CTATCGGGAACAGCACACAC	58.640	55.000	0.00	0.00	0.00	3.82
2436	2498	0.682292	TATCGGGAACAGCACACACA	59.318	50.000	0.00	0.00	0.00	3.72
2437	2499	0.179032	ATCGGGAACAGCACACACAA	60.179	50.000	0.00	0.00	0.00	3.33
2438	2500	0.813610	TCGGGAACAGCACACACAAG	60.814	55.000	0.00	0.00	0.00	3.16
2439	2501	0.813610	CGGGAACAGCACACACAAGA	60.814	55.000	0.00	0.00	0.00	3.02
2440	2502	1.388547	GGGAACAGCACACACAAGAA	58.611	50.000	0.00	0.00	0.00	2.52
2441	2503	1.748493	GGGAACAGCACACACAAGAAA	59.252	47.619	0.00	0.00	0.00	2.52
2442	2504	2.479560	GGGAACAGCACACACAAGAAAC	60.480	50.000	0.00	0.00	0.00	2.78
2443	2505	2.163412	GGAACAGCACACACAAGAAACA	59.837	45.455	0.00	0.00	0.00	2.83
2444	2506	3.181487	GGAACAGCACACACAAGAAACAT	60.181	43.478	0.00	0.00	0.00	2.71
2445	2507	4.423732	GAACAGCACACACAAGAAACATT	58.576	39.130	0.00	0.00	0.00	2.71
2446	2508	4.032703	ACAGCACACACAAGAAACATTC	57.967	40.909	0.00	0.00	0.00	2.67
2447	2509	3.443329	ACAGCACACACAAGAAACATTCA	59.557	39.130	0.00	0.00	0.00	2.57
2448	2510	4.098349	ACAGCACACACAAGAAACATTCAT	59.902	37.500	0.00	0.00	0.00	2.57
2449	2511	4.678287	CAGCACACACAAGAAACATTCATC	59.322	41.667	0.00	0.00	0.00	2.92
2450	2512	3.665409	GCACACACAAGAAACATTCATCG	59.335	43.478	0.00	0.00	0.00	3.84
2451	2513	3.665409	CACACACAAGAAACATTCATCGC	59.335	43.478	0.00	0.00	0.00	4.58
2452	2514	3.314913	ACACACAAGAAACATTCATCGCA	59.685	39.130	0.00	0.00	0.00	5.10
2453	2515	3.665409	CACACAAGAAACATTCATCGCAC	59.335	43.478	0.00	0.00	0.00	5.34
2454	2516	3.314913	ACACAAGAAACATTCATCGCACA	59.685	39.130	0.00	0.00	0.00	4.57
2455	2517	4.202000	ACACAAGAAACATTCATCGCACAA	60.202	37.500	0.00	0.00	0.00	3.33
2456	2518	4.380678	CACAAGAAACATTCATCGCACAAG	59.619	41.667	0.00	0.00	0.00	3.16
2457	2519	4.275689	ACAAGAAACATTCATCGCACAAGA	59.724	37.500	0.00	0.00	0.00	3.02
2458	2520	4.675190	AGAAACATTCATCGCACAAGAG	57.325	40.909	0.00	0.00	0.00	2.85
2459	2521	3.438087	AGAAACATTCATCGCACAAGAGG	59.562	43.478	0.00	0.00	0.00	3.69
2460	2522	2.768253	ACATTCATCGCACAAGAGGA	57.232	45.000	0.00	0.00	0.00	3.71
2461	2523	3.057969	ACATTCATCGCACAAGAGGAA	57.942	42.857	0.00	0.00	43.61	3.36
2462	2524	3.411446	ACATTCATCGCACAAGAGGAAA	58.589	40.909	0.00	0.00	42.89	3.13
2463	2525	4.012374	ACATTCATCGCACAAGAGGAAAT	58.988	39.130	0.00	0.00	42.89	2.17
2464	2526	4.095483	ACATTCATCGCACAAGAGGAAATC	59.905	41.667	0.00	0.00	42.89	2.17
2465	2527	2.270923	TCATCGCACAAGAGGAAATCG	58.729	47.619	0.00	0.00	0.00	3.34
2466	2528	2.094234	TCATCGCACAAGAGGAAATCGA	60.094	45.455	0.00	0.00	0.00	3.59
2533	2596	2.202440	CTTCGTGACGCGTCCGAT	60.202	61.111	35.67	9.57	42.13	4.18
2571	2635	2.279120	GGTGCTCATCTCTCGCGG	60.279	66.667	6.13	0.00	0.00	6.46
2588	2652	2.584391	GGAACTCCCGTCAGCCACT	61.584	63.158	0.00	0.00	0.00	4.00
2609	2673	4.600111	ACTAACCACCAAACCTTATCTCCA	59.400	41.667	0.00	0.00	0.00	3.86
2661	2758	4.507710	TCCTTCTCTCCAAAACATGATCG	58.492	43.478	0.00	0.00	0.00	3.69
2784	2886	0.865111	TCGGCGTTGTGATGAAACAG	59.135	50.000	6.85	0.00	0.00	3.16
2786	2888	1.660052	CGGCGTTGTGATGAAACAGTG	60.660	52.381	0.00	0.00	0.00	3.66
2839	2941	2.358247	GCACCCGTCGATGGTTGT	60.358	61.111	20.86	10.94	32.46	3.32
2843	2945	2.569657	CCGTCGATGGTTGTCGGA	59.430	61.111	15.98	0.00	43.22	4.55
2845	2953	2.158959	CGTCGATGGTTGTCGGAGC	61.159	63.158	0.00	0.00	41.74	4.70
2848	2956	2.456119	CGATGGTTGTCGGAGCTGC	61.456	63.158	0.00	0.00	37.94	5.25
2906	3015	4.717629	CTCGTTGTCGGCCGCTGA	62.718	66.667	23.51	12.10	37.69	4.26
2935	3044	3.000819	ATCCCTCGCCGGTGTTGA	61.001	61.111	16.01	10.37	0.00	3.18
2959	3068	2.125269	GCTATGCGACCCGTGGTT	60.125	61.111	0.00	0.00	35.25	3.67
2964	3073	2.898343	GCGACCCGTGGTTGTTGT	60.898	61.111	10.80	0.00	39.22	3.32
3080	3198	2.668550	GGCCCAACGACACTCCAC	60.669	66.667	0.00	0.00	0.00	4.02
3090	3208	4.994471	CACTCCACCGCAGCAGCA	62.994	66.667	0.82	0.00	42.27	4.41
3096	3214	4.609018	ACCGCAGCAGCAACGACT	62.609	61.111	8.54	0.00	42.27	4.18
3124	3243	0.530744	ATGTTGCATTGCAGCTCCAG	59.469	50.000	23.27	0.00	40.35	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
424	426	1.066002	GATCCGACGATTTGGTCCGTA	59.934	52.381	0.00	0.00	39.30	4.02
558	570	2.691927	CTGCACTGTGACTTAGATGCA	58.308	47.619	12.86	0.00	40.57	3.96
588	600	2.107950	TTTAATGTGCAGCGCCTAGT	57.892	45.000	2.29	0.00	0.00	2.57
606	618	1.078426	GAGGTAGGCGCCACACATT	60.078	57.895	31.54	16.96	0.00	2.71
761	774	3.508793	AGAATGAACTGCCCATGAAACTG	59.491	43.478	0.00	0.00	0.00	3.16
799	812	7.042389	GGCAAATTTGACAATTTTAACCTCGAA	60.042	33.333	22.31	0.00	40.09	3.71
800	813	6.422400	GGCAAATTTGACAATTTTAACCTCGA	59.578	34.615	22.31	0.00	40.09	4.04
997	1014	3.708631	CTCCCTGCTGGTATATATGGAGG	59.291	52.174	9.00	11.33	37.70	4.30
1077	1108	2.112072	TTGGGCAGGAGAGGAGAGGT	62.112	60.000	0.00	0.00	0.00	3.85
1082	1117	1.613630	GGAGTTGGGCAGGAGAGGA	60.614	63.158	0.00	0.00	0.00	3.71
1090	1125	0.256752	CATGAGATGGGAGTTGGGCA	59.743	55.000	0.00	0.00	0.00	5.36
1370	1422	0.678395	CCAGCATGAGTATCTCGGCT	59.322	55.000	0.00	8.99	41.86	5.52
2107	2159	3.440415	GGCGGGCAGTTTGGCTAC	61.440	66.667	0.00	0.00	43.20	3.58
2117	2169	0.829333	TACTAATTAACCGGCGGGCA	59.171	50.000	31.78	14.74	36.48	5.36
2140	2192	3.619038	GCTTCGATGGACTCCTAAAACTG	59.381	47.826	0.00	0.00	0.00	3.16
2141	2193	3.515901	AGCTTCGATGGACTCCTAAAACT	59.484	43.478	0.00	0.00	0.00	2.66
2142	2194	3.619038	CAGCTTCGATGGACTCCTAAAAC	59.381	47.826	0.00	0.00	0.00	2.43
2143	2195	3.513912	TCAGCTTCGATGGACTCCTAAAA	59.486	43.478	0.00	0.00	0.00	1.52
2144	2196	3.096852	TCAGCTTCGATGGACTCCTAAA	58.903	45.455	0.00	0.00	0.00	1.85
2158	2211	5.332883	CGCAGATTATGTACACATCAGCTTC	60.333	44.000	21.98	2.96	37.76	3.86
2227	2284	3.078837	TCCTTGGATACGGCAAAAAGTC	58.921	45.455	0.00	0.00	42.51	3.01
2228	2285	3.149005	TCCTTGGATACGGCAAAAAGT	57.851	42.857	0.00	0.00	42.51	2.66
2278	2339	6.998074	TGTACCATCAATTCTCAAAACTGTCT	59.002	34.615	0.00	0.00	0.00	3.41
2333	2394	2.616376	TCAGAACATTCCACAAACACCG	59.384	45.455	0.00	0.00	0.00	4.94
2336	2397	4.384940	TCGATCAGAACATTCCACAAACA	58.615	39.130	0.00	0.00	0.00	2.83
2339	2400	4.872124	CAGATCGATCAGAACATTCCACAA	59.128	41.667	26.47	0.00	0.00	3.33
2340	2401	4.081476	ACAGATCGATCAGAACATTCCACA	60.081	41.667	26.47	0.00	0.00	4.17
2392	2454	4.296621	ACTGAGCCTTTTACGGGTTTAT	57.703	40.909	0.00	0.00	34.32	1.40
2393	2455	3.775261	ACTGAGCCTTTTACGGGTTTA	57.225	42.857	0.00	0.00	34.32	2.01
2394	2456	2.651382	ACTGAGCCTTTTACGGGTTT	57.349	45.000	0.00	0.00	34.32	3.27
2433	2495	3.887741	TGTGCGATGAATGTTTCTTGTG	58.112	40.909	0.00	0.00	0.00	3.33
2434	2496	4.275689	TCTTGTGCGATGAATGTTTCTTGT	59.724	37.500	0.00	0.00	0.00	3.16
2435	2497	4.786507	TCTTGTGCGATGAATGTTTCTTG	58.213	39.130	0.00	0.00	0.00	3.02
2436	2498	4.083110	CCTCTTGTGCGATGAATGTTTCTT	60.083	41.667	0.00	0.00	0.00	2.52
2437	2499	3.438087	CCTCTTGTGCGATGAATGTTTCT	59.562	43.478	0.00	0.00	0.00	2.52
2438	2500	3.436704	TCCTCTTGTGCGATGAATGTTTC	59.563	43.478	0.00	0.00	0.00	2.78
2439	2501	3.411446	TCCTCTTGTGCGATGAATGTTT	58.589	40.909	0.00	0.00	0.00	2.83
2440	2502	3.057969	TCCTCTTGTGCGATGAATGTT	57.942	42.857	0.00	0.00	0.00	2.71
2441	2503	2.768253	TCCTCTTGTGCGATGAATGT	57.232	45.000	0.00	0.00	0.00	2.71
2442	2504	4.595116	GATTTCCTCTTGTGCGATGAATG	58.405	43.478	0.00	0.00	0.00	2.67
2443	2505	3.310774	CGATTTCCTCTTGTGCGATGAAT	59.689	43.478	0.00	0.00	0.00	2.57
2444	2506	2.672874	CGATTTCCTCTTGTGCGATGAA	59.327	45.455	0.00	0.00	0.00	2.57
2445	2507	2.094234	TCGATTTCCTCTTGTGCGATGA	60.094	45.455	0.00	0.00	0.00	2.92
2446	2508	2.270923	TCGATTTCCTCTTGTGCGATG	58.729	47.619	0.00	0.00	0.00	3.84
2447	2509	2.672961	TCGATTTCCTCTTGTGCGAT	57.327	45.000	0.00	0.00	0.00	4.58
2448	2510	2.672961	ATCGATTTCCTCTTGTGCGA	57.327	45.000	0.00	0.00	0.00	5.10
2449	2511	3.185188	CCATATCGATTTCCTCTTGTGCG	59.815	47.826	1.71	0.00	0.00	5.34
2450	2512	3.499918	CCCATATCGATTTCCTCTTGTGC	59.500	47.826	1.71	0.00	0.00	4.57
2451	2513	4.960938	TCCCATATCGATTTCCTCTTGTG	58.039	43.478	1.71	0.00	0.00	3.33
2452	2514	5.630415	TTCCCATATCGATTTCCTCTTGT	57.370	39.130	1.71	0.00	0.00	3.16
2453	2515	5.050091	CGTTTCCCATATCGATTTCCTCTTG	60.050	44.000	1.71	0.00	0.00	3.02
2454	2516	5.057149	CGTTTCCCATATCGATTTCCTCTT	58.943	41.667	1.71	0.00	0.00	2.85
2455	2517	4.101119	ACGTTTCCCATATCGATTTCCTCT	59.899	41.667	1.71	0.00	0.00	3.69
2456	2518	4.377897	ACGTTTCCCATATCGATTTCCTC	58.622	43.478	1.71	0.00	0.00	3.71
2457	2519	4.417426	ACGTTTCCCATATCGATTTCCT	57.583	40.909	1.71	0.00	0.00	3.36
2458	2520	5.494632	AAACGTTTCCCATATCGATTTCC	57.505	39.130	7.96	0.00	0.00	3.13
2459	2521	8.898983	TTTTAAACGTTTCCCATATCGATTTC	57.101	30.769	18.42	0.00	0.00	2.17
2460	2522	9.511144	GATTTTAAACGTTTCCCATATCGATTT	57.489	29.630	18.42	0.00	0.00	2.17
2461	2523	8.679100	TGATTTTAAACGTTTCCCATATCGATT	58.321	29.630	18.42	0.00	0.00	3.34
2462	2524	8.215926	TGATTTTAAACGTTTCCCATATCGAT	57.784	30.769	18.42	2.16	0.00	3.59
2463	2525	7.612668	TGATTTTAAACGTTTCCCATATCGA	57.387	32.000	18.42	0.00	0.00	3.59
2464	2526	7.219344	GGTTGATTTTAAACGTTTCCCATATCG	59.781	37.037	18.42	0.00	0.00	2.92
2465	2527	7.219344	CGGTTGATTTTAAACGTTTCCCATATC	59.781	37.037	18.42	13.84	36.09	1.63
2466	2528	7.030768	CGGTTGATTTTAAACGTTTCCCATAT	58.969	34.615	18.42	5.37	36.09	1.78
2588	2652	4.600111	AGTGGAGATAAGGTTTGGTGGTTA	59.400	41.667	0.00	0.00	0.00	2.85
2609	2673	2.733593	GCTCACGTTCGCGGAAGT	60.734	61.111	6.13	1.96	46.45	3.01
2661	2758	6.127842	ACGAGAGGTTAGAGATGAAGAAAGTC	60.128	42.308	0.00	0.00	0.00	3.01
2848	2956	2.601398	ATCGCCGAATGCTGCATCG	61.601	57.895	16.55	18.79	38.05	3.84
2906	3015	0.179084	CGAGGGATGCATTGTACCGT	60.179	55.000	0.00	0.00	0.00	4.83
2909	3018	1.498865	CGGCGAGGGATGCATTGTAC	61.499	60.000	0.00	0.00	0.00	2.90
2911	3020	2.514592	CGGCGAGGGATGCATTGT	60.515	61.111	0.00	0.00	0.00	2.71
2935	3044	1.450312	GGGTCGCATAGCAACAGCT	60.450	57.895	0.00	0.00	42.33	4.24
2950	3059	2.203098	CCGACAACAACCACGGGT	60.203	61.111	0.00	0.00	41.41	5.28
2959	3068	1.506309	GCATCACAGCACCGACAACA	61.506	55.000	0.00	0.00	0.00	3.33
3063	3181	2.668550	GTGGAGTGTCGTTGGGCC	60.669	66.667	0.00	0.00	0.00	5.80
3073	3191	4.994471	TGCTGCTGCGGTGGAGTG	62.994	66.667	10.62	0.00	43.34	3.51
3074	3192	4.254709	TTGCTGCTGCGGTGGAGT	62.255	61.111	10.62	0.00	43.34	3.85
3080	3198	3.782244	GAGTCGTTGCTGCTGCGG	61.782	66.667	11.21	3.55	43.34	5.69
3090	3208	1.477685	AACATCACCGGGGAGTCGTT	61.478	55.000	14.24	12.86	0.00	3.85
3096	3214	0.964860	CAATGCAACATCACCGGGGA	60.965	55.000	9.99	9.99	0.00	4.81
3172	3291	1.396648	CTGCAATGAAACATCGCCGTA	59.603	47.619	0.00	0.00	0.00	4.02
3173	3292	0.168788	CTGCAATGAAACATCGCCGT	59.831	50.000	0.00	0.00	0.00	5.68

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.