Multiple sequence alignment - TraesCS4D01G238800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G238800 chr4D 100.000 3533 0 0 1 3533 400929487 400925955 0.000000e+00 6525
1 TraesCS4D01G238800 chr4D 94.032 1441 80 5 1095 2535 400827110 400828544 0.000000e+00 2180
2 TraesCS4D01G238800 chr4D 97.841 1158 22 1 1323 2480 417422532 417421378 0.000000e+00 1997
3 TraesCS4D01G238800 chr4D 93.928 527 16 3 678 1199 417423080 417422565 0.000000e+00 782
4 TraesCS4D01G238800 chr4D 92.037 427 30 4 2922 3346 294006521 294006945 6.530000e-167 597
5 TraesCS4D01G238800 chr4D 89.180 305 30 2 212 515 21890505 21890203 9.260000e-101 377
6 TraesCS4D01G238800 chr4D 88.889 279 9 9 2658 2922 417419681 417419411 1.220000e-84 324
7 TraesCS4D01G238800 chr4D 95.722 187 8 0 3347 3533 294007083 294007269 5.730000e-78 302
8 TraesCS4D01G238800 chr4D 95.722 187 8 0 3347 3533 482717307 482717121 5.730000e-78 302
9 TraesCS4D01G238800 chr4D 89.583 144 11 2 1 143 417468525 417468385 2.800000e-41 180
10 TraesCS4D01G238800 chr4B 94.424 2224 81 20 702 2911 495357008 495354814 0.000000e+00 3380
11 TraesCS4D01G238800 chr4B 93.828 1442 81 7 1095 2535 495148074 495149508 0.000000e+00 2163
12 TraesCS4D01G238800 chr4B 89.899 297 28 2 221 515 814403 814107 7.160000e-102 381
13 TraesCS4D01G238800 chr4B 88.961 154 12 3 1 153 495358724 495358575 6.020000e-43 185
14 TraesCS4D01G238800 chr4B 86.628 172 13 4 523 694 495358558 495358397 7.790000e-42 182
15 TraesCS4D01G238800 chr4A 90.419 2432 118 65 521 2922 58810743 58808397 0.000000e+00 3094
16 TraesCS4D01G238800 chr4A 93.954 1439 79 7 1095 2532 58570116 58571547 0.000000e+00 2169
17 TraesCS4D01G238800 chr4A 96.154 78 3 0 2357 2434 58793070 58792993 1.030000e-25 128
18 TraesCS4D01G238800 chr7D 91.841 429 31 4 2921 3346 563745861 563746288 2.350000e-166 595
19 TraesCS4D01G238800 chr7D 86.697 436 54 4 2922 3356 124021021 124020589 6.860000e-132 481
20 TraesCS4D01G238800 chr7D 90.132 304 29 1 213 515 201830839 201831142 9.190000e-106 394
21 TraesCS4D01G238800 chr6A 89.461 427 42 3 2922 3346 235084632 235085057 1.440000e-148 536
22 TraesCS4D01G238800 chr6A 89.180 305 29 3 214 516 36496126 36495824 9.260000e-101 377
23 TraesCS4D01G238800 chr2B 87.765 425 49 3 2924 3346 729125254 729125677 8.810000e-136 494
24 TraesCS4D01G238800 chr1B 88.107 412 46 3 2925 3334 377346036 377346446 1.470000e-133 486
25 TraesCS4D01G238800 chr3D 88.918 388 40 3 2924 3309 119416283 119416669 3.190000e-130 475
26 TraesCS4D01G238800 chr5B 88.718 390 40 4 2922 3309 246949668 246950055 1.150000e-129 473
27 TraesCS4D01G238800 chr5B 89.474 304 27 5 215 515 635258641 635258942 2.570000e-101 379
28 TraesCS4D01G238800 chr2D 85.321 436 58 6 2914 3346 37641221 37641653 2.500000e-121 446
29 TraesCS4D01G238800 chr2D 94.652 187 10 0 3347 3533 194803689 194803875 1.240000e-74 291
30 TraesCS4D01G238800 chr5D 89.109 303 32 1 214 515 521864291 521863989 3.330000e-100 375
31 TraesCS4D01G238800 chr5D 96.257 187 7 0 3347 3533 459970606 459970792 1.230000e-79 307
32 TraesCS4D01G238800 chr5D 94.118 187 11 0 3347 3533 9500210 9500396 5.770000e-73 285
33 TraesCS4D01G238800 chr3B 89.562 297 29 2 221 515 191186846 191186550 3.330000e-100 375
34 TraesCS4D01G238800 chr3B 95.699 186 8 0 3347 3532 731138045 731137860 2.060000e-77 300
35 TraesCS4D01G238800 chr3B 95.699 186 8 0 3347 3532 731208815 731208630 2.060000e-77 300
36 TraesCS4D01G238800 chr1A 88.599 307 35 0 210 516 11647928 11648234 1.200000e-99 374
37 TraesCS4D01G238800 chr5A 85.303 347 45 6 195 537 64980835 64980491 1.560000e-93 353
38 TraesCS4D01G238800 chr6B 96.257 187 7 0 3347 3533 694348462 694348276 1.230000e-79 307
39 TraesCS4D01G238800 chr7B 95.135 185 9 0 3349 3533 640008267 640008083 3.450000e-75 292


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G238800 chr4D 400925955 400929487 3532 True 6525.000000 6525 100.000000 1 3533 1 chr4D.!!$R2 3532
1 TraesCS4D01G238800 chr4D 400827110 400828544 1434 False 2180.000000 2180 94.032000 1095 2535 1 chr4D.!!$F1 1440
2 TraesCS4D01G238800 chr4D 417419411 417423080 3669 True 1034.333333 1997 93.552667 678 2922 3 chr4D.!!$R5 2244
3 TraesCS4D01G238800 chr4D 294006521 294007269 748 False 449.500000 597 93.879500 2922 3533 2 chr4D.!!$F2 611
4 TraesCS4D01G238800 chr4B 495148074 495149508 1434 False 2163.000000 2163 93.828000 1095 2535 1 chr4B.!!$F1 1440
5 TraesCS4D01G238800 chr4B 495354814 495358724 3910 True 1249.000000 3380 90.004333 1 2911 3 chr4B.!!$R2 2910
6 TraesCS4D01G238800 chr4A 58808397 58810743 2346 True 3094.000000 3094 90.419000 521 2922 1 chr4A.!!$R2 2401
7 TraesCS4D01G238800 chr4A 58570116 58571547 1431 False 2169.000000 2169 93.954000 1095 2532 1 chr4A.!!$F1 1437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 293 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.00 4.73 F
330 332 0.036765 AGGACTTTCGGCAATGCGTA 60.037 50.0 0.00 0.00 0.00 4.42 F
422 424 0.108138 CGGCTCAGTCTTCCGGAAAT 60.108 55.0 19.39 4.28 39.52 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2469 3876 0.467290 TGAACTCAACCTTGGTGCCC 60.467 55.000 0.00 0.0 0.00 5.36 R
2517 3924 6.904954 TTTAATTTTTAAACAGCGCTCTCG 57.095 33.333 7.13 0.0 39.07 4.04 R
2559 3966 1.578915 CCGTACGTTAATCCGTTGTCG 59.421 52.381 15.21 1.5 42.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.396811 AGGACGGAAGGTGGAGTTTG 59.603 55.000 0.00 0.00 0.00 2.93
44 45 0.605589 GAAGGTGGAGTTTGGACGGG 60.606 60.000 0.00 0.00 0.00 5.28
46 47 3.047877 GTGGAGTTTGGACGGGCG 61.048 66.667 0.00 0.00 0.00 6.13
47 48 3.552384 TGGAGTTTGGACGGGCGT 61.552 61.111 0.00 0.00 0.00 5.68
48 49 3.047877 GGAGTTTGGACGGGCGTG 61.048 66.667 0.00 0.00 0.00 5.34
66 68 2.040544 GGCAGGTGATTGTGGACGG 61.041 63.158 0.00 0.00 0.00 4.79
95 97 3.392882 GGCTTCTTGGGTCAAATTTGTG 58.607 45.455 17.47 0.00 0.00 3.33
96 98 3.392882 GCTTCTTGGGTCAAATTTGTGG 58.607 45.455 17.47 3.95 0.00 4.17
97 99 3.392882 CTTCTTGGGTCAAATTTGTGGC 58.607 45.455 17.47 9.26 0.00 5.01
107 109 2.325509 AATTTGTGGCGACGCTTAAC 57.674 45.000 20.77 15.58 42.82 2.01
112 114 2.202837 GGCGACGCTTAACCCGAT 60.203 61.111 20.77 0.00 0.00 4.18
116 118 0.643820 CGACGCTTAACCCGATGTTC 59.356 55.000 0.00 0.00 38.42 3.18
131 133 3.312421 CGATGTTCCTAATTGCAACCGAT 59.688 43.478 0.00 0.00 0.00 4.18
137 139 3.119065 TCCTAATTGCAACCGATGACGTA 60.119 43.478 0.00 0.00 37.88 3.57
138 140 3.000925 CCTAATTGCAACCGATGACGTAC 59.999 47.826 0.00 0.00 37.88 3.67
139 141 0.996462 ATTGCAACCGATGACGTACG 59.004 50.000 15.01 15.01 37.88 3.67
140 142 0.318869 TTGCAACCGATGACGTACGT 60.319 50.000 23.04 23.04 37.88 3.57
141 143 1.004785 TGCAACCGATGACGTACGTG 61.005 55.000 28.16 13.52 37.88 4.49
142 144 1.680105 GCAACCGATGACGTACGTGG 61.680 60.000 28.16 22.25 37.88 4.94
143 145 0.109643 CAACCGATGACGTACGTGGA 60.110 55.000 28.16 12.61 37.88 4.02
144 146 0.597568 AACCGATGACGTACGTGGAA 59.402 50.000 28.16 11.62 37.88 3.53
145 147 0.597568 ACCGATGACGTACGTGGAAA 59.402 50.000 28.16 8.89 37.88 3.13
146 148 0.986992 CCGATGACGTACGTGGAAAC 59.013 55.000 28.16 11.53 37.88 2.78
147 149 1.401931 CCGATGACGTACGTGGAAACT 60.402 52.381 28.16 0.00 37.88 2.66
148 150 2.159531 CCGATGACGTACGTGGAAACTA 60.160 50.000 28.16 3.32 37.88 2.24
149 151 3.491356 CGATGACGTACGTGGAAACTAA 58.509 45.455 28.16 1.02 34.56 2.24
150 152 3.541130 CGATGACGTACGTGGAAACTAAG 59.459 47.826 28.16 3.37 34.56 2.18
151 153 3.988379 TGACGTACGTGGAAACTAAGT 57.012 42.857 28.16 0.00 0.00 2.24
152 154 4.305989 TGACGTACGTGGAAACTAAGTT 57.694 40.909 28.16 0.00 0.00 2.66
153 155 4.681744 TGACGTACGTGGAAACTAAGTTT 58.318 39.130 28.16 0.00 38.54 2.66
154 156 5.108517 TGACGTACGTGGAAACTAAGTTTT 58.891 37.500 28.16 0.00 35.77 2.43
155 157 5.580297 TGACGTACGTGGAAACTAAGTTTTT 59.420 36.000 28.16 0.00 35.77 1.94
188 190 8.239314 CACGTGGAAACTAAGTTGATACTACTA 58.761 37.037 7.95 0.00 33.17 1.82
195 197 9.759473 AAACTAAGTTGATACTACTAGTACCCA 57.241 33.333 0.00 0.00 32.84 4.51
196 198 9.933240 AACTAAGTTGATACTACTAGTACCCAT 57.067 33.333 0.00 0.00 32.84 4.00
197 199 9.571816 ACTAAGTTGATACTACTAGTACCCATC 57.428 37.037 0.00 3.08 32.84 3.51
198 200 9.570468 CTAAGTTGATACTACTAGTACCCATCA 57.430 37.037 0.00 5.53 32.84 3.07
200 202 8.638629 AGTTGATACTACTAGTACCCATCATC 57.361 38.462 13.28 12.62 32.84 2.92
201 203 8.225416 AGTTGATACTACTAGTACCCATCATCA 58.775 37.037 17.16 10.41 32.84 3.07
202 204 9.026121 GTTGATACTACTAGTACCCATCATCAT 57.974 37.037 13.28 0.00 32.84 2.45
203 205 8.809468 TGATACTACTAGTACCCATCATCATC 57.191 38.462 0.00 0.00 32.84 2.92
204 206 8.390921 TGATACTACTAGTACCCATCATCATCA 58.609 37.037 0.00 0.00 32.84 3.07
205 207 9.415008 GATACTACTAGTACCCATCATCATCAT 57.585 37.037 0.00 0.00 32.84 2.45
206 208 7.710676 ACTACTAGTACCCATCATCATCATC 57.289 40.000 0.00 0.00 0.00 2.92
207 209 5.651387 ACTAGTACCCATCATCATCATCG 57.349 43.478 0.00 0.00 0.00 3.84
208 210 5.325239 ACTAGTACCCATCATCATCATCGA 58.675 41.667 0.00 0.00 0.00 3.59
209 211 5.954752 ACTAGTACCCATCATCATCATCGAT 59.045 40.000 0.00 0.00 0.00 3.59
210 212 5.082251 AGTACCCATCATCATCATCGATG 57.918 43.478 19.61 19.61 43.50 3.84
218 220 2.985957 TCATCATCGATGAGTGCCAA 57.014 45.000 30.11 8.61 43.11 4.52
219 221 3.480505 TCATCATCGATGAGTGCCAAT 57.519 42.857 30.11 11.52 43.11 3.16
220 222 3.396560 TCATCATCGATGAGTGCCAATC 58.603 45.455 30.11 0.00 43.11 2.67
221 223 2.985957 TCATCGATGAGTGCCAATCA 57.014 45.000 23.99 0.00 32.11 2.57
222 224 3.264998 TCATCGATGAGTGCCAATCAA 57.735 42.857 23.99 0.00 32.11 2.57
223 225 2.938451 TCATCGATGAGTGCCAATCAAC 59.062 45.455 23.99 0.00 32.11 3.18
224 226 1.737838 TCGATGAGTGCCAATCAACC 58.262 50.000 0.00 0.00 0.00 3.77
225 227 1.278985 TCGATGAGTGCCAATCAACCT 59.721 47.619 0.00 0.00 0.00 3.50
226 228 1.399440 CGATGAGTGCCAATCAACCTG 59.601 52.381 0.00 0.00 0.00 4.00
227 229 2.440409 GATGAGTGCCAATCAACCTGT 58.560 47.619 0.00 0.00 0.00 4.00
228 230 1.608055 TGAGTGCCAATCAACCTGTG 58.392 50.000 0.00 0.00 0.00 3.66
229 231 0.883833 GAGTGCCAATCAACCTGTGG 59.116 55.000 0.00 0.00 35.39 4.17
230 232 0.185901 AGTGCCAATCAACCTGTGGT 59.814 50.000 0.00 0.00 37.65 4.16
242 244 4.447138 AACCTGTGGTTGAATGGTTAGA 57.553 40.909 0.71 0.00 45.07 2.10
243 245 4.021102 ACCTGTGGTTGAATGGTTAGAG 57.979 45.455 0.00 0.00 27.29 2.43
244 246 3.244911 ACCTGTGGTTGAATGGTTAGAGG 60.245 47.826 0.00 0.00 27.29 3.69
245 247 3.347216 CTGTGGTTGAATGGTTAGAGGG 58.653 50.000 0.00 0.00 0.00 4.30
246 248 2.983192 TGTGGTTGAATGGTTAGAGGGA 59.017 45.455 0.00 0.00 0.00 4.20
247 249 3.244770 TGTGGTTGAATGGTTAGAGGGAC 60.245 47.826 0.00 0.00 0.00 4.46
249 251 3.009033 TGGTTGAATGGTTAGAGGGACTG 59.991 47.826 0.00 0.00 41.55 3.51
250 252 3.009143 GGTTGAATGGTTAGAGGGACTGT 59.991 47.826 0.00 0.00 41.55 3.55
251 253 4.224370 GGTTGAATGGTTAGAGGGACTGTA 59.776 45.833 0.00 0.00 41.55 2.74
252 254 5.420409 GTTGAATGGTTAGAGGGACTGTAG 58.580 45.833 0.00 0.00 41.55 2.74
253 255 4.684724 TGAATGGTTAGAGGGACTGTAGT 58.315 43.478 0.00 0.00 41.55 2.73
254 256 5.834460 TGAATGGTTAGAGGGACTGTAGTA 58.166 41.667 0.00 0.00 41.55 1.82
255 257 6.441222 TGAATGGTTAGAGGGACTGTAGTAT 58.559 40.000 0.00 0.00 41.55 2.12
256 258 6.550108 TGAATGGTTAGAGGGACTGTAGTATC 59.450 42.308 0.00 0.00 41.55 2.24
257 259 4.801164 TGGTTAGAGGGACTGTAGTATCC 58.199 47.826 0.00 0.00 41.55 2.59
263 265 1.049402 GGACTGTAGTATCCCAGCCC 58.951 60.000 0.00 0.00 31.76 5.19
264 266 1.691482 GGACTGTAGTATCCCAGCCCA 60.691 57.143 0.00 0.00 32.10 5.36
265 267 1.413077 GACTGTAGTATCCCAGCCCAC 59.587 57.143 0.00 0.00 31.76 4.61
266 268 0.759346 CTGTAGTATCCCAGCCCACC 59.241 60.000 0.00 0.00 0.00 4.61
267 269 0.043485 TGTAGTATCCCAGCCCACCA 59.957 55.000 0.00 0.00 0.00 4.17
268 270 0.759346 GTAGTATCCCAGCCCACCAG 59.241 60.000 0.00 0.00 0.00 4.00
269 271 0.399949 TAGTATCCCAGCCCACCAGG 60.400 60.000 0.00 0.00 39.47 4.45
270 272 1.692749 GTATCCCAGCCCACCAGGA 60.693 63.158 0.00 0.00 38.24 3.86
271 273 1.062488 GTATCCCAGCCCACCAGGAT 61.062 60.000 0.00 0.00 41.90 3.24
272 274 0.328450 TATCCCAGCCCACCAGGATT 60.328 55.000 0.00 0.00 39.77 3.01
273 275 1.649271 ATCCCAGCCCACCAGGATTC 61.649 60.000 0.00 0.00 35.55 2.52
274 276 2.615465 CCCAGCCCACCAGGATTCA 61.615 63.158 0.00 0.00 38.24 2.57
275 277 1.383799 CCAGCCCACCAGGATTCAA 59.616 57.895 0.00 0.00 38.24 2.69
276 278 0.251742 CCAGCCCACCAGGATTCAAA 60.252 55.000 0.00 0.00 38.24 2.69
277 279 1.620524 CCAGCCCACCAGGATTCAAAT 60.621 52.381 0.00 0.00 38.24 2.32
278 280 1.753073 CAGCCCACCAGGATTCAAATC 59.247 52.381 0.00 0.00 38.24 2.17
289 291 1.064654 GATTCAAATCCTGGTGCTCGC 59.935 52.381 0.00 0.00 0.00 5.03
290 292 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
291 293 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
292 294 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
293 295 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
294 296 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
295 297 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
296 298 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
297 299 2.722094 TCCTGGTGCTCGCATTTATTT 58.278 42.857 0.00 0.00 0.00 1.40
298 300 2.682856 TCCTGGTGCTCGCATTTATTTC 59.317 45.455 0.00 0.00 0.00 2.17
299 301 2.684881 CCTGGTGCTCGCATTTATTTCT 59.315 45.455 0.00 0.00 0.00 2.52
300 302 3.488047 CCTGGTGCTCGCATTTATTTCTG 60.488 47.826 0.00 0.00 0.00 3.02
301 303 2.423185 TGGTGCTCGCATTTATTTCTGG 59.577 45.455 0.00 0.00 0.00 3.86
302 304 2.682856 GGTGCTCGCATTTATTTCTGGA 59.317 45.455 0.00 0.00 0.00 3.86
303 305 3.316308 GGTGCTCGCATTTATTTCTGGAT 59.684 43.478 0.00 0.00 0.00 3.41
304 306 4.202050 GGTGCTCGCATTTATTTCTGGATT 60.202 41.667 0.00 0.00 0.00 3.01
305 307 5.343249 GTGCTCGCATTTATTTCTGGATTT 58.657 37.500 0.00 0.00 0.00 2.17
306 308 6.459573 GGTGCTCGCATTTATTTCTGGATTTA 60.460 38.462 0.00 0.00 0.00 1.40
307 309 7.141363 GTGCTCGCATTTATTTCTGGATTTAT 58.859 34.615 0.00 0.00 0.00 1.40
308 310 7.649306 GTGCTCGCATTTATTTCTGGATTTATT 59.351 33.333 0.00 0.00 0.00 1.40
309 311 8.196771 TGCTCGCATTTATTTCTGGATTTATTT 58.803 29.630 0.00 0.00 0.00 1.40
310 312 8.694394 GCTCGCATTTATTTCTGGATTTATTTC 58.306 33.333 0.00 0.00 0.00 2.17
311 313 9.734620 CTCGCATTTATTTCTGGATTTATTTCA 57.265 29.630 0.00 0.00 0.00 2.69
312 314 9.734620 TCGCATTTATTTCTGGATTTATTTCAG 57.265 29.630 0.00 0.00 0.00 3.02
313 315 8.971321 CGCATTTATTTCTGGATTTATTTCAGG 58.029 33.333 0.00 0.00 0.00 3.86
320 322 6.985188 TCTGGATTTATTTCAGGACTTTCG 57.015 37.500 0.00 0.00 0.00 3.46
321 323 5.880332 TCTGGATTTATTTCAGGACTTTCGG 59.120 40.000 0.00 0.00 0.00 4.30
322 324 4.398044 TGGATTTATTTCAGGACTTTCGGC 59.602 41.667 0.00 0.00 0.00 5.54
323 325 4.398044 GGATTTATTTCAGGACTTTCGGCA 59.602 41.667 0.00 0.00 0.00 5.69
324 326 5.105917 GGATTTATTTCAGGACTTTCGGCAA 60.106 40.000 0.00 0.00 0.00 4.52
325 327 5.975693 TTTATTTCAGGACTTTCGGCAAT 57.024 34.783 0.00 0.00 0.00 3.56
326 328 3.855689 ATTTCAGGACTTTCGGCAATG 57.144 42.857 0.00 0.00 0.00 2.82
327 329 0.881118 TTCAGGACTTTCGGCAATGC 59.119 50.000 0.00 0.00 0.00 3.56
328 330 1.135315 CAGGACTTTCGGCAATGCG 59.865 57.895 0.00 0.00 0.00 4.73
329 331 1.302511 AGGACTTTCGGCAATGCGT 60.303 52.632 0.00 0.00 0.00 5.24
330 332 0.036765 AGGACTTTCGGCAATGCGTA 60.037 50.000 0.00 0.00 0.00 4.42
331 333 1.014352 GGACTTTCGGCAATGCGTAT 58.986 50.000 0.00 0.00 0.00 3.06
332 334 1.003866 GGACTTTCGGCAATGCGTATC 60.004 52.381 0.00 0.00 0.00 2.24
333 335 1.933853 GACTTTCGGCAATGCGTATCT 59.066 47.619 0.00 0.00 0.00 1.98
334 336 3.120792 GACTTTCGGCAATGCGTATCTA 58.879 45.455 0.00 0.00 0.00 1.98
335 337 3.123804 ACTTTCGGCAATGCGTATCTAG 58.876 45.455 0.00 0.00 0.00 2.43
336 338 2.148916 TTCGGCAATGCGTATCTAGG 57.851 50.000 0.00 0.00 0.00 3.02
337 339 0.317160 TCGGCAATGCGTATCTAGGG 59.683 55.000 0.00 0.00 0.00 3.53
338 340 0.670546 CGGCAATGCGTATCTAGGGG 60.671 60.000 0.00 0.00 0.00 4.79
339 341 0.321653 GGCAATGCGTATCTAGGGGG 60.322 60.000 0.00 0.00 0.00 5.40
340 342 0.685097 GCAATGCGTATCTAGGGGGA 59.315 55.000 0.00 0.00 0.00 4.81
341 343 1.338200 GCAATGCGTATCTAGGGGGAG 60.338 57.143 0.00 0.00 0.00 4.30
342 344 1.276421 CAATGCGTATCTAGGGGGAGG 59.724 57.143 0.00 0.00 0.00 4.30
343 345 0.784495 ATGCGTATCTAGGGGGAGGA 59.216 55.000 0.00 0.00 0.00 3.71
344 346 0.112606 TGCGTATCTAGGGGGAGGAG 59.887 60.000 0.00 0.00 0.00 3.69
345 347 0.404812 GCGTATCTAGGGGGAGGAGA 59.595 60.000 0.00 0.00 0.00 3.71
346 348 1.887522 GCGTATCTAGGGGGAGGAGAC 60.888 61.905 0.00 0.00 0.00 3.36
347 349 1.611148 CGTATCTAGGGGGAGGAGACG 60.611 61.905 0.00 0.00 38.09 4.18
348 350 1.424684 GTATCTAGGGGGAGGAGACGT 59.575 57.143 0.00 0.00 0.00 4.34
349 351 0.935194 ATCTAGGGGGAGGAGACGTT 59.065 55.000 0.00 0.00 0.00 3.99
350 352 0.258194 TCTAGGGGGAGGAGACGTTC 59.742 60.000 0.00 0.00 0.00 3.95
371 373 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
372 374 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
373 375 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
374 376 2.359107 ACGACGAGGTGCCTACGA 60.359 61.111 0.00 0.00 0.00 3.43
375 377 1.712977 GACGACGAGGTGCCTACGAT 61.713 60.000 0.00 4.15 0.00 3.73
376 378 1.298413 CGACGAGGTGCCTACGATG 60.298 63.158 13.88 5.24 0.00 3.84
377 379 1.712018 CGACGAGGTGCCTACGATGA 61.712 60.000 13.88 0.00 0.00 2.92
378 380 0.248539 GACGAGGTGCCTACGATGAC 60.249 60.000 13.88 0.00 0.00 3.06
379 381 0.680280 ACGAGGTGCCTACGATGACT 60.680 55.000 13.88 0.00 0.00 3.41
380 382 0.456221 CGAGGTGCCTACGATGACTT 59.544 55.000 0.00 0.00 0.00 3.01
381 383 1.534175 CGAGGTGCCTACGATGACTTC 60.534 57.143 0.00 0.00 0.00 3.01
396 398 7.867579 CGATGACTTCGTAAATTTCAAGATG 57.132 36.000 0.00 0.00 43.01 2.90
397 399 7.675478 CGATGACTTCGTAAATTTCAAGATGA 58.325 34.615 0.00 0.00 43.01 2.92
398 400 8.331022 CGATGACTTCGTAAATTTCAAGATGAT 58.669 33.333 0.00 0.00 43.01 2.45
404 406 9.573102 CTTCGTAAATTTCAAGATGATATGACG 57.427 33.333 0.00 0.00 33.53 4.35
405 407 8.072238 TCGTAAATTTCAAGATGATATGACGG 57.928 34.615 0.00 0.00 33.32 4.79
406 408 6.792250 CGTAAATTTCAAGATGATATGACGGC 59.208 38.462 0.00 0.00 31.19 5.68
407 409 6.949352 AAATTTCAAGATGATATGACGGCT 57.051 33.333 0.00 0.00 0.00 5.52
408 410 6.551385 AATTTCAAGATGATATGACGGCTC 57.449 37.500 0.00 0.00 0.00 4.70
409 411 4.670896 TTCAAGATGATATGACGGCTCA 57.329 40.909 0.00 0.00 0.00 4.26
410 412 4.248691 TCAAGATGATATGACGGCTCAG 57.751 45.455 0.00 0.00 0.00 3.35
411 413 3.638627 TCAAGATGATATGACGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
412 414 3.932545 AGATGATATGACGGCTCAGTC 57.067 47.619 0.00 1.58 41.30 3.51
413 415 3.495331 AGATGATATGACGGCTCAGTCT 58.505 45.455 0.00 0.00 41.47 3.24
414 416 3.894427 AGATGATATGACGGCTCAGTCTT 59.106 43.478 0.00 5.52 41.47 3.01
415 417 3.717400 TGATATGACGGCTCAGTCTTC 57.283 47.619 0.00 4.83 41.47 2.87
416 418 2.362397 TGATATGACGGCTCAGTCTTCC 59.638 50.000 0.00 0.00 41.47 3.46
418 420 1.949847 ATGACGGCTCAGTCTTCCGG 61.950 60.000 0.00 0.00 46.78 5.14
419 421 2.282958 ACGGCTCAGTCTTCCGGA 60.283 61.111 0.00 0.00 46.78 5.14
420 422 1.874345 GACGGCTCAGTCTTCCGGAA 61.874 60.000 17.73 17.73 46.78 4.30
421 423 1.292223 CGGCTCAGTCTTCCGGAAA 59.708 57.895 19.39 6.66 39.52 3.13
422 424 0.108138 CGGCTCAGTCTTCCGGAAAT 60.108 55.000 19.39 4.28 39.52 2.17
423 425 1.373570 GGCTCAGTCTTCCGGAAATG 58.626 55.000 19.39 16.52 0.00 2.32
424 426 0.729690 GCTCAGTCTTCCGGAAATGC 59.270 55.000 19.39 10.94 0.00 3.56
425 427 1.677217 GCTCAGTCTTCCGGAAATGCT 60.677 52.381 19.39 13.05 0.00 3.79
426 428 2.275318 CTCAGTCTTCCGGAAATGCTC 58.725 52.381 19.39 6.95 0.00 4.26
427 429 1.623311 TCAGTCTTCCGGAAATGCTCA 59.377 47.619 19.39 0.00 0.00 4.26
428 430 2.237143 TCAGTCTTCCGGAAATGCTCAT 59.763 45.455 19.39 0.00 0.00 2.90
429 431 3.450817 TCAGTCTTCCGGAAATGCTCATA 59.549 43.478 19.39 0.00 0.00 2.15
430 432 4.081142 TCAGTCTTCCGGAAATGCTCATAA 60.081 41.667 19.39 0.00 0.00 1.90
431 433 4.635765 CAGTCTTCCGGAAATGCTCATAAA 59.364 41.667 19.39 0.00 0.00 1.40
432 434 5.123820 CAGTCTTCCGGAAATGCTCATAAAA 59.876 40.000 19.39 0.00 0.00 1.52
433 435 5.710099 AGTCTTCCGGAAATGCTCATAAAAA 59.290 36.000 19.39 0.00 0.00 1.94
434 436 6.378280 AGTCTTCCGGAAATGCTCATAAAAAT 59.622 34.615 19.39 0.00 0.00 1.82
435 437 7.556275 AGTCTTCCGGAAATGCTCATAAAAATA 59.444 33.333 19.39 0.00 0.00 1.40
436 438 7.857885 GTCTTCCGGAAATGCTCATAAAAATAG 59.142 37.037 19.39 0.00 0.00 1.73
437 439 6.633500 TCCGGAAATGCTCATAAAAATAGG 57.367 37.500 0.00 0.00 0.00 2.57
438 440 5.534654 TCCGGAAATGCTCATAAAAATAGGG 59.465 40.000 0.00 0.00 0.00 3.53
439 441 5.301805 CCGGAAATGCTCATAAAAATAGGGT 59.698 40.000 0.00 0.00 0.00 4.34
440 442 6.208644 CGGAAATGCTCATAAAAATAGGGTG 58.791 40.000 0.00 0.00 0.00 4.61
441 443 6.183360 CGGAAATGCTCATAAAAATAGGGTGT 60.183 38.462 0.00 0.00 0.00 4.16
442 444 6.980397 GGAAATGCTCATAAAAATAGGGTGTG 59.020 38.462 0.00 0.00 0.00 3.82
443 445 4.981806 TGCTCATAAAAATAGGGTGTGC 57.018 40.909 0.00 0.00 0.00 4.57
444 446 3.376859 TGCTCATAAAAATAGGGTGTGCG 59.623 43.478 0.00 0.00 33.43 5.34
445 447 3.377172 GCTCATAAAAATAGGGTGTGCGT 59.623 43.478 0.00 0.00 0.00 5.24
446 448 4.730613 GCTCATAAAAATAGGGTGTGCGTG 60.731 45.833 0.00 0.00 0.00 5.34
447 449 4.328536 TCATAAAAATAGGGTGTGCGTGT 58.671 39.130 0.00 0.00 0.00 4.49
448 450 4.155099 TCATAAAAATAGGGTGTGCGTGTG 59.845 41.667 0.00 0.00 0.00 3.82
449 451 1.975660 AAAATAGGGTGTGCGTGTGT 58.024 45.000 0.00 0.00 0.00 3.72
450 452 1.234821 AAATAGGGTGTGCGTGTGTG 58.765 50.000 0.00 0.00 0.00 3.82
451 453 1.234615 AATAGGGTGTGCGTGTGTGC 61.235 55.000 0.00 0.00 0.00 4.57
452 454 2.390306 ATAGGGTGTGCGTGTGTGCA 62.390 55.000 0.00 0.00 43.95 4.57
460 462 1.085893 TGCGTGTGTGCATTCATAGG 58.914 50.000 0.00 0.00 40.62 2.57
461 463 0.378257 GCGTGTGTGCATTCATAGGG 59.622 55.000 0.00 0.00 34.15 3.53
462 464 2.011548 GCGTGTGTGCATTCATAGGGA 61.012 52.381 0.00 0.00 34.15 4.20
463 465 2.564771 CGTGTGTGCATTCATAGGGAT 58.435 47.619 0.00 0.00 0.00 3.85
464 466 2.288729 CGTGTGTGCATTCATAGGGATG 59.711 50.000 0.00 0.00 0.00 3.51
465 467 3.544684 GTGTGTGCATTCATAGGGATGA 58.455 45.455 0.00 0.00 40.45 2.92
466 468 3.562973 GTGTGTGCATTCATAGGGATGAG 59.437 47.826 0.00 0.00 43.03 2.90
467 469 3.200605 TGTGTGCATTCATAGGGATGAGT 59.799 43.478 0.00 0.00 43.03 3.41
469 471 3.200605 TGTGCATTCATAGGGATGAGTGT 59.799 43.478 0.00 0.00 46.40 3.55
470 472 4.408596 TGTGCATTCATAGGGATGAGTGTA 59.591 41.667 0.00 5.11 46.40 2.90
471 473 5.072193 TGTGCATTCATAGGGATGAGTGTAT 59.928 40.000 0.00 0.00 46.40 2.29
472 474 5.410746 GTGCATTCATAGGGATGAGTGTATG 59.589 44.000 0.00 3.63 46.40 2.39
473 475 4.394300 GCATTCATAGGGATGAGTGTATGC 59.606 45.833 0.00 8.64 46.40 3.14
474 476 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
475 477 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
476 478 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
477 479 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
478 480 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
479 481 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
480 482 0.298707 GATGAGTGTATGCGCGTGTG 59.701 55.000 13.61 0.00 0.00 3.82
481 483 0.389817 ATGAGTGTATGCGCGTGTGT 60.390 50.000 13.61 0.00 0.00 3.72
482 484 0.241481 TGAGTGTATGCGCGTGTGTA 59.759 50.000 13.61 0.00 0.00 2.90
483 485 0.638746 GAGTGTATGCGCGTGTGTAC 59.361 55.000 13.61 2.41 0.00 2.90
493 495 2.470286 GTGTGTACGAGCGCTTGC 59.530 61.111 24.80 9.90 39.58 4.01
494 496 3.103289 TGTGTACGAGCGCTTGCG 61.103 61.111 24.80 20.18 45.69 4.85
495 497 3.103911 GTGTACGAGCGCTTGCGT 61.104 61.111 24.68 24.68 45.69 5.24
496 498 2.803670 TGTACGAGCGCTTGCGTC 60.804 61.111 24.96 17.10 45.69 5.19
497 499 2.504244 GTACGAGCGCTTGCGTCT 60.504 61.111 24.96 8.94 45.69 4.18
498 500 2.504026 TACGAGCGCTTGCGTCTG 60.504 61.111 24.96 6.42 45.69 3.51
499 501 3.263503 TACGAGCGCTTGCGTCTGT 62.264 57.895 24.96 7.85 45.69 3.41
500 502 1.914531 TACGAGCGCTTGCGTCTGTA 61.915 55.000 24.96 7.49 45.69 2.74
501 503 2.778997 CGAGCGCTTGCGTCTGTAC 61.779 63.158 13.26 0.00 45.69 2.90
502 504 2.432628 AGCGCTTGCGTCTGTACC 60.433 61.111 16.38 0.00 45.69 3.34
503 505 2.432628 GCGCTTGCGTCTGTACCT 60.433 61.111 16.38 0.00 0.00 3.08
504 506 2.027625 GCGCTTGCGTCTGTACCTT 61.028 57.895 16.38 0.00 0.00 3.50
505 507 1.781555 CGCTTGCGTCTGTACCTTG 59.218 57.895 6.86 0.00 0.00 3.61
506 508 0.944311 CGCTTGCGTCTGTACCTTGT 60.944 55.000 6.86 0.00 0.00 3.16
507 509 1.226746 GCTTGCGTCTGTACCTTGTT 58.773 50.000 0.00 0.00 0.00 2.83
508 510 2.409975 GCTTGCGTCTGTACCTTGTTA 58.590 47.619 0.00 0.00 0.00 2.41
509 511 2.803956 GCTTGCGTCTGTACCTTGTTAA 59.196 45.455 0.00 0.00 0.00 2.01
510 512 3.249080 GCTTGCGTCTGTACCTTGTTAAA 59.751 43.478 0.00 0.00 0.00 1.52
511 513 4.260866 GCTTGCGTCTGTACCTTGTTAAAA 60.261 41.667 0.00 0.00 0.00 1.52
512 514 5.731126 GCTTGCGTCTGTACCTTGTTAAAAA 60.731 40.000 0.00 0.00 0.00 1.94
551 553 4.284178 AGTAGCCTTGGAATCGGTACTAA 58.716 43.478 0.00 0.00 0.00 2.24
556 558 3.255725 CTTGGAATCGGTACTAACGCAA 58.744 45.455 0.00 0.00 0.00 4.85
557 559 2.609350 TGGAATCGGTACTAACGCAAC 58.391 47.619 0.00 0.00 0.00 4.17
558 560 1.585214 GGAATCGGTACTAACGCAACG 59.415 52.381 0.00 0.00 0.00 4.10
559 561 0.994263 AATCGGTACTAACGCAACGC 59.006 50.000 0.00 0.00 0.00 4.84
560 562 0.171903 ATCGGTACTAACGCAACGCT 59.828 50.000 0.00 0.00 0.00 5.07
582 584 3.647636 ACTAGTAGATGCATGTGTCCCT 58.352 45.455 2.46 0.00 0.00 4.20
583 585 3.639094 ACTAGTAGATGCATGTGTCCCTC 59.361 47.826 2.46 0.00 0.00 4.30
584 586 1.765314 AGTAGATGCATGTGTCCCTCC 59.235 52.381 2.46 0.00 0.00 4.30
585 587 1.131638 TAGATGCATGTGTCCCTCCC 58.868 55.000 2.46 0.00 0.00 4.30
621 623 4.134379 TGAAAATTTCAAGCAACTGGCA 57.866 36.364 5.87 0.00 38.98 4.92
673 675 7.976135 ATCTTATCCATAACAGTCTCATTGC 57.024 36.000 0.00 0.00 0.00 3.56
676 678 3.609853 TCCATAACAGTCTCATTGCACC 58.390 45.455 0.00 0.00 0.00 5.01
695 697 1.337728 CCACACCTGCTCGTTGTATCA 60.338 52.381 0.00 0.00 0.00 2.15
696 698 1.726791 CACACCTGCTCGTTGTATCAC 59.273 52.381 0.00 0.00 0.00 3.06
697 699 1.337823 ACACCTGCTCGTTGTATCACC 60.338 52.381 0.00 0.00 0.00 4.02
698 700 1.066858 CACCTGCTCGTTGTATCACCT 60.067 52.381 0.00 0.00 0.00 4.00
919 2309 2.587194 ACGCTGCATGATCGCTCC 60.587 61.111 0.00 0.00 0.00 4.70
955 2345 1.951424 GCTATTTGTACGCCCAACCCA 60.951 52.381 0.00 0.00 0.00 4.51
1224 2628 3.996744 CTTCGAGTCCCGCGTCGAC 62.997 68.421 17.58 15.72 44.55 4.20
2602 5583 0.318869 CAGCTCTCTCATAGCAGCCG 60.319 60.000 0.00 0.00 42.62 5.52
2650 5631 2.414481 ACGTACGTGCCTCGCTATATAG 59.586 50.000 22.14 5.30 44.19 1.31
2655 5636 3.683822 ACGTGCCTCGCTATATAGTACTC 59.316 47.826 11.38 0.00 44.19 2.59
2656 5637 3.063725 CGTGCCTCGCTATATAGTACTCC 59.936 52.174 11.38 0.00 0.00 3.85
2658 5639 5.426504 GTGCCTCGCTATATAGTACTCCTA 58.573 45.833 11.38 0.00 0.00 2.94
2659 5640 5.524646 GTGCCTCGCTATATAGTACTCCTAG 59.475 48.000 11.38 0.30 0.00 3.02
2660 5641 5.424573 TGCCTCGCTATATAGTACTCCTAGA 59.575 44.000 11.38 0.00 0.00 2.43
2681 5666 0.372679 CGAGTCAGTCATGCATGCAC 59.627 55.000 25.37 18.94 0.00 4.57
2722 5727 1.473677 CATGGTGCCCTTGTGTATGTG 59.526 52.381 0.00 0.00 0.00 3.21
2723 5728 0.476338 TGGTGCCCTTGTGTATGTGT 59.524 50.000 0.00 0.00 0.00 3.72
2724 5729 0.881118 GGTGCCCTTGTGTATGTGTG 59.119 55.000 0.00 0.00 0.00 3.82
2725 5730 1.604604 GTGCCCTTGTGTATGTGTGT 58.395 50.000 0.00 0.00 0.00 3.72
2726 5731 1.266718 GTGCCCTTGTGTATGTGTGTG 59.733 52.381 0.00 0.00 0.00 3.82
2727 5732 0.240945 GCCCTTGTGTATGTGTGTGC 59.759 55.000 0.00 0.00 0.00 4.57
2789 5810 6.759827 GCCGTACTTTCCTGTAATAAGATTCA 59.240 38.462 0.00 0.00 0.00 2.57
2790 5811 7.279313 GCCGTACTTTCCTGTAATAAGATTCAA 59.721 37.037 0.00 0.00 0.00 2.69
2791 5812 8.818057 CCGTACTTTCCTGTAATAAGATTCAAG 58.182 37.037 0.00 0.00 0.00 3.02
2792 5813 9.582431 CGTACTTTCCTGTAATAAGATTCAAGA 57.418 33.333 0.00 0.00 0.00 3.02
2826 5847 1.732405 CGTACGGTAAAAGGGACGACC 60.732 57.143 7.57 0.00 40.67 4.79
2902 5924 1.589716 GCATTCACAGCCACTCACCC 61.590 60.000 0.00 0.00 0.00 4.61
2913 5935 2.570302 GCCACTCACCCTAGAAACCTAA 59.430 50.000 0.00 0.00 0.00 2.69
2914 5936 3.008704 GCCACTCACCCTAGAAACCTAAA 59.991 47.826 0.00 0.00 0.00 1.85
2915 5937 4.833390 CCACTCACCCTAGAAACCTAAAG 58.167 47.826 0.00 0.00 0.00 1.85
2916 5938 4.286291 CCACTCACCCTAGAAACCTAAAGT 59.714 45.833 0.00 0.00 0.00 2.66
2919 5941 5.187381 ACTCACCCTAGAAACCTAAAGTAGC 59.813 44.000 0.00 0.00 0.00 3.58
2937 5959 0.109319 GCATAGGGCGTGTTTGGTTG 60.109 55.000 0.00 0.00 0.00 3.77
2938 5960 0.109319 CATAGGGCGTGTTTGGTTGC 60.109 55.000 0.00 0.00 0.00 4.17
2942 5964 1.448922 GGGCGTGTTTGGTTGCAGTA 61.449 55.000 0.00 0.00 0.00 2.74
2943 5965 0.040425 GGCGTGTTTGGTTGCAGTAG 60.040 55.000 0.00 0.00 0.00 2.57
2944 5966 0.661020 GCGTGTTTGGTTGCAGTAGT 59.339 50.000 0.00 0.00 0.00 2.73
2945 5967 1.596954 GCGTGTTTGGTTGCAGTAGTG 60.597 52.381 0.00 0.00 0.00 2.74
2953 5975 3.990092 TGGTTGCAGTAGTGAACAGTAG 58.010 45.455 0.42 0.00 0.00 2.57
2954 5976 3.386726 TGGTTGCAGTAGTGAACAGTAGT 59.613 43.478 0.42 0.00 0.00 2.73
2966 5988 5.649395 AGTGAACAGTAGTTGCATTGCATAT 59.351 36.000 12.95 6.75 38.76 1.78
2968 5990 7.500227 AGTGAACAGTAGTTGCATTGCATATAT 59.500 33.333 12.95 1.69 38.76 0.86
2973 5995 8.906867 ACAGTAGTTGCATTGCATATATTTCTT 58.093 29.630 12.95 0.00 38.76 2.52
2990 6012 1.189752 CTTCACTCAGCCTGGCTCTA 58.810 55.000 20.49 9.24 36.40 2.43
3039 6062 1.069049 AGTTGTTTGGTTGCCTGCATC 59.931 47.619 0.00 0.00 0.00 3.91
3071 6094 6.196126 CCTGCATTAGGTAATACGCAAGTGA 61.196 44.000 0.00 0.00 46.95 3.41
3072 6095 7.456470 CCTGCATTAGGTAATACGCAAGTGAT 61.456 42.308 0.00 0.00 46.95 3.06
3073 6096 8.854833 CCTGCATTAGGTAATACGCAAGTGATT 61.855 40.741 0.00 0.00 46.95 2.57
3086 6109 4.328440 CGCAAGTGATTTTTGTTTGGTTGA 59.672 37.500 0.00 0.00 0.00 3.18
3095 6118 2.886862 TGTTTGGTTGACTGCATTGG 57.113 45.000 0.00 0.00 0.00 3.16
3115 6138 0.381801 CCCAAGCGGCATATGAACAC 59.618 55.000 6.97 0.00 0.00 3.32
3132 6155 2.041686 ACGGTGTTTGGTTGCACGT 61.042 52.632 0.00 0.00 36.54 4.49
3157 6180 6.924913 TGAGGTATGATTAAGAGCTAGCAT 57.075 37.500 18.83 5.17 0.00 3.79
3196 6219 5.978919 CAGAGTTAAGAGCTAGCAGATGAAG 59.021 44.000 18.83 0.00 0.00 3.02
3218 6241 1.200948 GGGAGAAGAAATGCAGTGTGC 59.799 52.381 0.00 0.00 45.29 4.57
3250 6273 1.373497 GAGTGCGGTGGACAGTGAG 60.373 63.158 0.00 0.00 0.00 3.51
3252 6275 3.545574 TGCGGTGGACAGTGAGCA 61.546 61.111 0.00 0.00 0.00 4.26
3273 6296 2.431771 CGCCGTGTCCGACATGAA 60.432 61.111 20.34 0.00 37.29 2.57
3293 6316 2.434185 GCACGAAGTCATGGGCGA 60.434 61.111 0.00 0.00 41.61 5.54
3366 6526 0.036858 GGTGGCAGAGAACAGAGGAC 60.037 60.000 0.00 0.00 0.00 3.85
3382 6542 0.602905 GGACAAGAACCCCGTCAGTG 60.603 60.000 0.00 0.00 0.00 3.66
3385 6545 1.227853 AAGAACCCCGTCAGTGTGC 60.228 57.895 0.00 0.00 0.00 4.57
3444 6604 2.181021 GCCGAGATGAACGACGGT 59.819 61.111 0.00 0.00 41.86 4.83
3484 6644 1.002900 CAAGACGCGAGAGAGGAGATC 60.003 57.143 15.93 0.00 34.13 2.75
3523 6683 6.295123 CCGGCTAGAGGAATAATTAAGCAGTA 60.295 42.308 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.157680 CCCGTCCAAACTCCACCT 58.842 61.111 0.00 0.00 0.00 4.00
44 45 2.562912 CACAATCACCTGCCACGC 59.437 61.111 0.00 0.00 0.00 5.34
46 47 1.577328 CGTCCACAATCACCTGCCAC 61.577 60.000 0.00 0.00 0.00 5.01
47 48 1.302431 CGTCCACAATCACCTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
48 49 2.040544 CCGTCCACAATCACCTGCC 61.041 63.158 0.00 0.00 0.00 4.85
50 51 0.321671 AGTCCGTCCACAATCACCTG 59.678 55.000 0.00 0.00 0.00 4.00
51 52 1.056660 AAGTCCGTCCACAATCACCT 58.943 50.000 0.00 0.00 0.00 4.00
66 68 2.335712 CCCAAGAAGCCGCCAAGTC 61.336 63.158 0.00 0.00 0.00 3.01
95 97 2.202837 ATCGGGTTAAGCGTCGCC 60.203 61.111 14.86 0.00 0.00 5.54
96 98 1.356527 AACATCGGGTTAAGCGTCGC 61.357 55.000 9.80 9.80 38.15 5.19
97 99 0.643820 GAACATCGGGTTAAGCGTCG 59.356 55.000 0.00 0.00 40.63 5.12
107 109 3.420839 GTTGCAATTAGGAACATCGGG 57.579 47.619 0.59 0.00 46.60 5.14
116 118 2.006888 ACGTCATCGGTTGCAATTAGG 58.993 47.619 0.59 0.00 41.85 2.69
131 133 3.988379 ACTTAGTTTCCACGTACGTCA 57.012 42.857 19.94 5.06 0.00 4.35
153 155 2.657143 AGTTTCCACGTGCCCTAAAAA 58.343 42.857 10.91 0.60 0.00 1.94
154 156 2.351706 AGTTTCCACGTGCCCTAAAA 57.648 45.000 10.91 2.37 0.00 1.52
155 157 3.181452 ACTTAGTTTCCACGTGCCCTAAA 60.181 43.478 10.91 4.85 0.00 1.85
156 158 2.369532 ACTTAGTTTCCACGTGCCCTAA 59.630 45.455 10.91 11.23 0.00 2.69
157 159 1.972795 ACTTAGTTTCCACGTGCCCTA 59.027 47.619 10.91 3.95 0.00 3.53
158 160 0.763035 ACTTAGTTTCCACGTGCCCT 59.237 50.000 10.91 4.95 0.00 5.19
159 161 1.265905 CAACTTAGTTTCCACGTGCCC 59.734 52.381 10.91 0.00 0.00 5.36
160 162 2.215196 TCAACTTAGTTTCCACGTGCC 58.785 47.619 10.91 0.00 0.00 5.01
161 163 4.689345 AGTATCAACTTAGTTTCCACGTGC 59.311 41.667 10.91 0.00 29.00 5.34
162 164 7.088905 AGTAGTATCAACTTAGTTTCCACGTG 58.911 38.462 9.08 9.08 37.15 4.49
188 190 5.082251 CATCGATGATGATGATGGGTACT 57.918 43.478 21.02 0.00 46.98 2.73
197 199 2.762745 TGGCACTCATCGATGATGATG 58.237 47.619 27.43 23.84 46.16 3.07
198 200 3.480505 TTGGCACTCATCGATGATGAT 57.519 42.857 27.43 13.90 46.16 2.45
199 201 2.985957 TTGGCACTCATCGATGATGA 57.014 45.000 27.43 7.82 45.35 2.92
200 202 3.135994 TGATTGGCACTCATCGATGATG 58.864 45.455 27.43 24.57 41.00 3.07
201 203 3.480505 TGATTGGCACTCATCGATGAT 57.519 42.857 27.43 15.09 36.02 2.45
202 204 2.938451 GTTGATTGGCACTCATCGATGA 59.062 45.455 25.80 25.80 35.16 2.92
203 205 2.032550 GGTTGATTGGCACTCATCGATG 59.967 50.000 19.61 19.61 0.00 3.84
204 206 2.092753 AGGTTGATTGGCACTCATCGAT 60.093 45.455 8.45 0.00 0.00 3.59
205 207 1.278985 AGGTTGATTGGCACTCATCGA 59.721 47.619 8.45 0.00 0.00 3.59
206 208 1.399440 CAGGTTGATTGGCACTCATCG 59.601 52.381 8.45 0.00 0.00 3.84
207 209 2.163010 CACAGGTTGATTGGCACTCATC 59.837 50.000 8.45 7.76 0.00 2.92
208 210 2.165167 CACAGGTTGATTGGCACTCAT 58.835 47.619 8.45 0.00 0.00 2.90
209 211 1.608055 CACAGGTTGATTGGCACTCA 58.392 50.000 3.10 3.10 0.00 3.41
210 212 0.883833 CCACAGGTTGATTGGCACTC 59.116 55.000 0.00 0.00 0.00 3.51
211 213 0.185901 ACCACAGGTTGATTGGCACT 59.814 50.000 0.00 0.00 33.25 4.40
212 214 1.039856 AACCACAGGTTGATTGGCAC 58.960 50.000 0.00 0.00 45.07 5.01
213 215 3.529948 AACCACAGGTTGATTGGCA 57.470 47.368 0.00 0.00 45.07 4.92
222 224 3.244911 CCTCTAACCATTCAACCACAGGT 60.245 47.826 0.00 0.00 37.65 4.00
223 225 3.347216 CCTCTAACCATTCAACCACAGG 58.653 50.000 0.00 0.00 0.00 4.00
224 226 3.009033 TCCCTCTAACCATTCAACCACAG 59.991 47.826 0.00 0.00 0.00 3.66
225 227 2.983192 TCCCTCTAACCATTCAACCACA 59.017 45.455 0.00 0.00 0.00 4.17
226 228 3.009143 AGTCCCTCTAACCATTCAACCAC 59.991 47.826 0.00 0.00 0.00 4.16
227 229 3.009033 CAGTCCCTCTAACCATTCAACCA 59.991 47.826 0.00 0.00 0.00 3.67
228 230 3.009143 ACAGTCCCTCTAACCATTCAACC 59.991 47.826 0.00 0.00 0.00 3.77
229 231 4.287766 ACAGTCCCTCTAACCATTCAAC 57.712 45.455 0.00 0.00 0.00 3.18
230 232 5.091552 ACTACAGTCCCTCTAACCATTCAA 58.908 41.667 0.00 0.00 0.00 2.69
231 233 4.684724 ACTACAGTCCCTCTAACCATTCA 58.315 43.478 0.00 0.00 0.00 2.57
232 234 6.015265 GGATACTACAGTCCCTCTAACCATTC 60.015 46.154 0.00 0.00 0.00 2.67
233 235 5.839606 GGATACTACAGTCCCTCTAACCATT 59.160 44.000 0.00 0.00 0.00 3.16
234 236 5.395611 GGATACTACAGTCCCTCTAACCAT 58.604 45.833 0.00 0.00 0.00 3.55
235 237 4.801164 GGATACTACAGTCCCTCTAACCA 58.199 47.826 0.00 0.00 0.00 3.67
245 247 1.413077 GTGGGCTGGGATACTACAGTC 59.587 57.143 0.00 0.00 38.56 3.51
246 248 1.497161 GTGGGCTGGGATACTACAGT 58.503 55.000 0.00 0.00 37.07 3.55
247 249 0.759346 GGTGGGCTGGGATACTACAG 59.241 60.000 0.00 0.00 37.76 2.74
248 250 0.043485 TGGTGGGCTGGGATACTACA 59.957 55.000 0.00 0.00 0.00 2.74
249 251 0.759346 CTGGTGGGCTGGGATACTAC 59.241 60.000 0.00 0.00 0.00 2.73
250 252 0.399949 CCTGGTGGGCTGGGATACTA 60.400 60.000 0.00 0.00 0.00 1.82
251 253 1.694169 CCTGGTGGGCTGGGATACT 60.694 63.158 0.00 0.00 0.00 2.12
252 254 1.062488 ATCCTGGTGGGCTGGGATAC 61.062 60.000 0.00 0.00 36.88 2.24
253 255 0.328450 AATCCTGGTGGGCTGGGATA 60.328 55.000 0.00 0.00 37.57 2.59
254 256 1.623686 AATCCTGGTGGGCTGGGAT 60.624 57.895 0.00 0.00 39.91 3.85
255 257 2.204291 AATCCTGGTGGGCTGGGA 60.204 61.111 0.00 0.00 34.39 4.37
256 258 2.153898 TTGAATCCTGGTGGGCTGGG 62.154 60.000 0.00 0.00 34.39 4.45
257 259 0.251742 TTTGAATCCTGGTGGGCTGG 60.252 55.000 0.00 0.00 34.39 4.85
258 260 1.753073 GATTTGAATCCTGGTGGGCTG 59.247 52.381 0.00 0.00 34.39 4.85
259 261 2.149973 GATTTGAATCCTGGTGGGCT 57.850 50.000 0.00 0.00 34.39 5.19
269 271 1.064654 GCGAGCACCAGGATTTGAATC 59.935 52.381 0.00 0.00 34.66 2.52
270 272 1.098050 GCGAGCACCAGGATTTGAAT 58.902 50.000 0.00 0.00 0.00 2.57
271 273 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
272 274 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
273 275 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
274 276 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
275 277 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
276 278 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
277 279 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
278 280 2.684881 AGAAATAAATGCGAGCACCAGG 59.315 45.455 0.00 0.00 0.00 4.45
279 281 3.488047 CCAGAAATAAATGCGAGCACCAG 60.488 47.826 0.00 0.00 0.00 4.00
280 282 2.423185 CCAGAAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
281 283 2.682856 TCCAGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
282 284 4.558538 ATCCAGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
283 285 5.581126 AAATCCAGAAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
284 286 8.579682 AAATAAATCCAGAAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
285 287 9.734620 TGAAATAAATCCAGAAATAAATGCGAG 57.265 29.630 0.00 0.00 0.00 5.03
286 288 9.734620 CTGAAATAAATCCAGAAATAAATGCGA 57.265 29.630 0.00 0.00 0.00 5.10
287 289 8.971321 CCTGAAATAAATCCAGAAATAAATGCG 58.029 33.333 0.00 0.00 0.00 4.73
294 296 8.462016 CGAAAGTCCTGAAATAAATCCAGAAAT 58.538 33.333 0.00 0.00 0.00 2.17
295 297 7.094377 CCGAAAGTCCTGAAATAAATCCAGAAA 60.094 37.037 0.00 0.00 0.00 2.52
296 298 6.374333 CCGAAAGTCCTGAAATAAATCCAGAA 59.626 38.462 0.00 0.00 0.00 3.02
297 299 5.880332 CCGAAAGTCCTGAAATAAATCCAGA 59.120 40.000 0.00 0.00 0.00 3.86
298 300 5.449177 GCCGAAAGTCCTGAAATAAATCCAG 60.449 44.000 0.00 0.00 0.00 3.86
299 301 4.398044 GCCGAAAGTCCTGAAATAAATCCA 59.602 41.667 0.00 0.00 0.00 3.41
300 302 4.398044 TGCCGAAAGTCCTGAAATAAATCC 59.602 41.667 0.00 0.00 0.00 3.01
301 303 5.560966 TGCCGAAAGTCCTGAAATAAATC 57.439 39.130 0.00 0.00 0.00 2.17
302 304 5.975693 TTGCCGAAAGTCCTGAAATAAAT 57.024 34.783 0.00 0.00 0.00 1.40
303 305 5.708948 CATTGCCGAAAGTCCTGAAATAAA 58.291 37.500 0.00 0.00 0.00 1.40
304 306 4.380444 GCATTGCCGAAAGTCCTGAAATAA 60.380 41.667 0.00 0.00 0.00 1.40
305 307 3.128589 GCATTGCCGAAAGTCCTGAAATA 59.871 43.478 0.00 0.00 0.00 1.40
306 308 2.094545 GCATTGCCGAAAGTCCTGAAAT 60.095 45.455 0.00 0.00 0.00 2.17
307 309 1.269448 GCATTGCCGAAAGTCCTGAAA 59.731 47.619 0.00 0.00 0.00 2.69
308 310 0.881118 GCATTGCCGAAAGTCCTGAA 59.119 50.000 0.00 0.00 0.00 3.02
309 311 1.298157 CGCATTGCCGAAAGTCCTGA 61.298 55.000 2.41 0.00 0.00 3.86
310 312 1.135315 CGCATTGCCGAAAGTCCTG 59.865 57.895 2.41 0.00 0.00 3.86
311 313 0.036765 TACGCATTGCCGAAAGTCCT 60.037 50.000 2.41 0.00 0.00 3.85
312 314 1.003866 GATACGCATTGCCGAAAGTCC 60.004 52.381 2.41 0.00 0.00 3.85
313 315 1.933853 AGATACGCATTGCCGAAAGTC 59.066 47.619 2.41 0.00 0.00 3.01
314 316 2.024176 AGATACGCATTGCCGAAAGT 57.976 45.000 2.41 0.00 0.00 2.66
315 317 2.476619 CCTAGATACGCATTGCCGAAAG 59.523 50.000 2.41 0.00 0.00 2.62
316 318 2.479837 CCTAGATACGCATTGCCGAAA 58.520 47.619 2.41 0.00 0.00 3.46
317 319 1.270094 CCCTAGATACGCATTGCCGAA 60.270 52.381 2.41 0.00 0.00 4.30
318 320 0.317160 CCCTAGATACGCATTGCCGA 59.683 55.000 2.41 0.00 0.00 5.54
319 321 0.670546 CCCCTAGATACGCATTGCCG 60.671 60.000 2.41 1.05 0.00 5.69
320 322 0.321653 CCCCCTAGATACGCATTGCC 60.322 60.000 2.41 0.00 0.00 4.52
321 323 0.685097 TCCCCCTAGATACGCATTGC 59.315 55.000 0.00 0.00 0.00 3.56
322 324 1.276421 CCTCCCCCTAGATACGCATTG 59.724 57.143 0.00 0.00 0.00 2.82
323 325 1.149288 TCCTCCCCCTAGATACGCATT 59.851 52.381 0.00 0.00 0.00 3.56
324 326 0.784495 TCCTCCCCCTAGATACGCAT 59.216 55.000 0.00 0.00 0.00 4.73
325 327 0.112606 CTCCTCCCCCTAGATACGCA 59.887 60.000 0.00 0.00 0.00 5.24
326 328 0.404812 TCTCCTCCCCCTAGATACGC 59.595 60.000 0.00 0.00 0.00 4.42
327 329 1.611148 CGTCTCCTCCCCCTAGATACG 60.611 61.905 0.00 0.00 0.00 3.06
328 330 1.424684 ACGTCTCCTCCCCCTAGATAC 59.575 57.143 0.00 0.00 0.00 2.24
329 331 1.830486 ACGTCTCCTCCCCCTAGATA 58.170 55.000 0.00 0.00 0.00 1.98
330 332 0.935194 AACGTCTCCTCCCCCTAGAT 59.065 55.000 0.00 0.00 0.00 1.98
331 333 0.258194 GAACGTCTCCTCCCCCTAGA 59.742 60.000 0.00 0.00 0.00 2.43
332 334 0.756070 GGAACGTCTCCTCCCCCTAG 60.756 65.000 8.87 0.00 41.61 3.02
333 335 1.309006 GGAACGTCTCCTCCCCCTA 59.691 63.158 8.87 0.00 41.61 3.53
334 336 2.039137 GGAACGTCTCCTCCCCCT 59.961 66.667 8.87 0.00 41.61 4.79
335 337 3.082055 GGGAACGTCTCCTCCCCC 61.082 72.222 11.43 0.05 45.03 5.40
353 355 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
354 356 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
355 357 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
356 358 1.712977 ATCGTAGGCACCTCGTCGTC 61.713 60.000 0.00 0.00 0.00 4.20
357 359 1.748122 ATCGTAGGCACCTCGTCGT 60.748 57.895 0.00 0.00 0.00 4.34
358 360 1.298413 CATCGTAGGCACCTCGTCG 60.298 63.158 0.00 0.00 0.00 5.12
359 361 0.248539 GTCATCGTAGGCACCTCGTC 60.249 60.000 0.00 0.00 0.00 4.20
360 362 0.680280 AGTCATCGTAGGCACCTCGT 60.680 55.000 0.00 0.00 0.00 4.18
361 363 0.456221 AAGTCATCGTAGGCACCTCG 59.544 55.000 0.00 0.00 0.00 4.63
362 364 1.534175 CGAAGTCATCGTAGGCACCTC 60.534 57.143 0.00 0.00 46.52 3.85
363 365 0.456221 CGAAGTCATCGTAGGCACCT 59.544 55.000 0.00 0.00 46.52 4.00
364 366 2.959275 CGAAGTCATCGTAGGCACC 58.041 57.895 0.00 0.00 46.52 5.01
378 380 9.573102 CGTCATATCATCTTGAAATTTACGAAG 57.427 33.333 0.00 0.00 0.00 3.79
379 381 8.547894 CCGTCATATCATCTTGAAATTTACGAA 58.452 33.333 0.00 0.00 0.00 3.85
380 382 7.307160 GCCGTCATATCATCTTGAAATTTACGA 60.307 37.037 0.00 0.00 0.00 3.43
381 383 6.792250 GCCGTCATATCATCTTGAAATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
382 384 7.865707 AGCCGTCATATCATCTTGAAATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
383 385 7.714813 TGAGCCGTCATATCATCTTGAAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
384 386 6.543465 TGAGCCGTCATATCATCTTGAAATTT 59.457 34.615 0.00 0.00 0.00 1.82
385 387 6.057533 TGAGCCGTCATATCATCTTGAAATT 58.942 36.000 0.00 0.00 0.00 1.82
386 388 5.614308 TGAGCCGTCATATCATCTTGAAAT 58.386 37.500 0.00 0.00 0.00 2.17
387 389 5.022282 TGAGCCGTCATATCATCTTGAAA 57.978 39.130 0.00 0.00 0.00 2.69
388 390 4.100035 ACTGAGCCGTCATATCATCTTGAA 59.900 41.667 0.00 0.00 30.18 2.69
389 391 3.638627 ACTGAGCCGTCATATCATCTTGA 59.361 43.478 0.00 0.00 30.18 3.02
390 392 3.986572 GACTGAGCCGTCATATCATCTTG 59.013 47.826 0.00 0.00 34.11 3.02
391 393 3.894427 AGACTGAGCCGTCATATCATCTT 59.106 43.478 1.91 0.00 36.38 2.40
392 394 3.495331 AGACTGAGCCGTCATATCATCT 58.505 45.455 1.91 0.00 36.38 2.90
393 395 3.932545 AGACTGAGCCGTCATATCATC 57.067 47.619 1.91 0.00 36.38 2.92
394 396 3.006323 GGAAGACTGAGCCGTCATATCAT 59.994 47.826 1.91 0.00 36.38 2.45
395 397 2.362397 GGAAGACTGAGCCGTCATATCA 59.638 50.000 1.91 0.00 36.38 2.15
396 398 2.605823 CGGAAGACTGAGCCGTCATATC 60.606 54.545 0.00 0.00 40.17 1.63
397 399 1.338337 CGGAAGACTGAGCCGTCATAT 59.662 52.381 0.00 0.00 40.17 1.78
398 400 0.738975 CGGAAGACTGAGCCGTCATA 59.261 55.000 0.00 0.00 40.17 2.15
399 401 1.513158 CGGAAGACTGAGCCGTCAT 59.487 57.895 0.00 0.00 40.17 3.06
400 402 2.636412 CCGGAAGACTGAGCCGTCA 61.636 63.158 0.00 0.00 43.35 4.35
401 403 1.874345 TTCCGGAAGACTGAGCCGTC 61.874 60.000 14.35 0.00 43.35 4.79
402 404 1.469335 TTTCCGGAAGACTGAGCCGT 61.469 55.000 17.97 0.00 43.35 5.68
403 405 0.108138 ATTTCCGGAAGACTGAGCCG 60.108 55.000 17.97 0.00 44.42 5.52
404 406 1.373570 CATTTCCGGAAGACTGAGCC 58.626 55.000 17.97 0.00 0.00 4.70
405 407 0.729690 GCATTTCCGGAAGACTGAGC 59.270 55.000 17.97 12.05 0.00 4.26
406 408 2.275318 GAGCATTTCCGGAAGACTGAG 58.725 52.381 17.97 6.17 0.00 3.35
407 409 1.623311 TGAGCATTTCCGGAAGACTGA 59.377 47.619 17.97 7.57 0.00 3.41
408 410 2.099141 TGAGCATTTCCGGAAGACTG 57.901 50.000 17.97 16.41 0.00 3.51
409 411 4.487714 TTATGAGCATTTCCGGAAGACT 57.512 40.909 17.97 15.46 0.00 3.24
410 412 5.560966 TTTTATGAGCATTTCCGGAAGAC 57.439 39.130 17.97 10.79 0.00 3.01
411 413 6.773976 ATTTTTATGAGCATTTCCGGAAGA 57.226 33.333 17.97 9.16 0.00 2.87
412 414 7.141363 CCTATTTTTATGAGCATTTCCGGAAG 58.859 38.462 17.97 8.09 0.00 3.46
413 415 6.040391 CCCTATTTTTATGAGCATTTCCGGAA 59.960 38.462 14.35 14.35 0.00 4.30
414 416 5.534654 CCCTATTTTTATGAGCATTTCCGGA 59.465 40.000 0.00 0.00 0.00 5.14
415 417 5.301805 ACCCTATTTTTATGAGCATTTCCGG 59.698 40.000 0.00 0.00 0.00 5.14
416 418 6.183360 ACACCCTATTTTTATGAGCATTTCCG 60.183 38.462 0.00 0.00 0.00 4.30
417 419 6.980397 CACACCCTATTTTTATGAGCATTTCC 59.020 38.462 0.00 0.00 0.00 3.13
418 420 6.476706 GCACACCCTATTTTTATGAGCATTTC 59.523 38.462 0.00 0.00 0.00 2.17
419 421 6.340522 GCACACCCTATTTTTATGAGCATTT 58.659 36.000 0.00 0.00 0.00 2.32
420 422 5.450412 CGCACACCCTATTTTTATGAGCATT 60.450 40.000 0.00 0.00 0.00 3.56
421 423 4.036734 CGCACACCCTATTTTTATGAGCAT 59.963 41.667 0.00 0.00 0.00 3.79
422 424 3.376859 CGCACACCCTATTTTTATGAGCA 59.623 43.478 0.00 0.00 0.00 4.26
423 425 3.377172 ACGCACACCCTATTTTTATGAGC 59.623 43.478 0.00 0.00 0.00 4.26
424 426 4.394920 ACACGCACACCCTATTTTTATGAG 59.605 41.667 0.00 0.00 0.00 2.90
425 427 4.155099 CACACGCACACCCTATTTTTATGA 59.845 41.667 0.00 0.00 0.00 2.15
426 428 4.083003 ACACACGCACACCCTATTTTTATG 60.083 41.667 0.00 0.00 0.00 1.90
427 429 4.076394 ACACACGCACACCCTATTTTTAT 58.924 39.130 0.00 0.00 0.00 1.40
428 430 3.251245 CACACACGCACACCCTATTTTTA 59.749 43.478 0.00 0.00 0.00 1.52
429 431 2.034053 CACACACGCACACCCTATTTTT 59.966 45.455 0.00 0.00 0.00 1.94
430 432 1.606668 CACACACGCACACCCTATTTT 59.393 47.619 0.00 0.00 0.00 1.82
431 433 1.234821 CACACACGCACACCCTATTT 58.765 50.000 0.00 0.00 0.00 1.40
432 434 1.234615 GCACACACGCACACCCTATT 61.235 55.000 0.00 0.00 0.00 1.73
433 435 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
434 436 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
435 437 3.772853 ATGCACACACGCACACCCT 62.773 57.895 0.00 0.00 46.56 4.34
436 438 2.731587 GAATGCACACACGCACACCC 62.732 60.000 0.00 0.00 46.56 4.61
437 439 1.370414 GAATGCACACACGCACACC 60.370 57.895 0.00 0.00 46.56 4.16
438 440 0.040157 ATGAATGCACACACGCACAC 60.040 50.000 0.00 0.00 46.56 3.82
439 441 1.464219 CTATGAATGCACACACGCACA 59.536 47.619 0.00 0.00 46.56 4.57
440 442 1.202065 CCTATGAATGCACACACGCAC 60.202 52.381 0.00 0.00 46.56 5.34
442 444 0.378257 CCCTATGAATGCACACACGC 59.622 55.000 0.00 0.00 0.00 5.34
443 445 2.022764 TCCCTATGAATGCACACACG 57.977 50.000 0.00 0.00 0.00 4.49
444 446 3.544684 TCATCCCTATGAATGCACACAC 58.455 45.455 0.00 0.00 39.20 3.82
445 447 3.200605 ACTCATCCCTATGAATGCACACA 59.799 43.478 0.00 0.00 41.57 3.72
446 448 3.562973 CACTCATCCCTATGAATGCACAC 59.437 47.826 0.00 0.00 41.57 3.82
447 449 3.200605 ACACTCATCCCTATGAATGCACA 59.799 43.478 0.00 0.00 41.91 4.57
448 450 3.813443 ACACTCATCCCTATGAATGCAC 58.187 45.455 0.00 0.00 41.91 4.57
449 451 5.554070 CATACACTCATCCCTATGAATGCA 58.446 41.667 0.00 0.00 41.91 3.96
450 452 4.394300 GCATACACTCATCCCTATGAATGC 59.606 45.833 6.88 6.88 41.91 3.56
451 453 4.628766 CGCATACACTCATCCCTATGAATG 59.371 45.833 0.00 0.00 43.41 2.67
452 454 4.825422 CGCATACACTCATCCCTATGAAT 58.175 43.478 0.00 0.00 41.57 2.57
453 455 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
454 456 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
455 457 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
456 458 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
457 459 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
458 460 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
459 461 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
460 462 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
461 463 0.298707 CACACGCGCATACACTCATC 59.701 55.000 5.73 0.00 0.00 2.92
462 464 0.389817 ACACACGCGCATACACTCAT 60.390 50.000 5.73 0.00 0.00 2.90
463 465 0.241481 TACACACGCGCATACACTCA 59.759 50.000 5.73 0.00 0.00 3.41
464 466 0.638746 GTACACACGCGCATACACTC 59.361 55.000 5.73 0.00 0.00 3.51
465 467 1.068832 CGTACACACGCGCATACACT 61.069 55.000 5.73 0.00 42.05 3.55
466 468 1.339134 CGTACACACGCGCATACAC 59.661 57.895 5.73 0.00 42.05 2.90
467 469 3.756718 CGTACACACGCGCATACA 58.243 55.556 5.73 0.00 42.05 2.29
476 478 2.470286 GCAAGCGCTCGTACACAC 59.530 61.111 12.06 0.00 34.30 3.82
477 479 3.103289 CGCAAGCGCTCGTACACA 61.103 61.111 12.06 0.00 35.30 3.72
478 480 3.055905 GACGCAAGCGCTCGTACAC 62.056 63.158 22.11 8.33 44.19 2.90
479 481 2.803670 GACGCAAGCGCTCGTACA 60.804 61.111 22.11 0.00 44.19 2.90
480 482 2.504244 AGACGCAAGCGCTCGTAC 60.504 61.111 22.11 15.57 44.19 3.67
481 483 1.914531 TACAGACGCAAGCGCTCGTA 61.915 55.000 22.11 9.95 44.19 3.43
482 484 3.263503 TACAGACGCAAGCGCTCGT 62.264 57.895 22.23 22.23 44.19 4.18
483 485 2.504026 TACAGACGCAAGCGCTCG 60.504 61.111 12.06 14.49 44.19 5.03
484 486 2.445438 GGTACAGACGCAAGCGCTC 61.445 63.158 12.06 11.06 44.19 5.03
485 487 2.432628 GGTACAGACGCAAGCGCT 60.433 61.111 15.09 2.64 44.19 5.92
486 488 2.027625 AAGGTACAGACGCAAGCGC 61.028 57.895 15.09 0.00 44.19 5.92
487 489 0.944311 ACAAGGTACAGACGCAAGCG 60.944 55.000 13.50 13.50 46.03 4.68
488 490 1.226746 AACAAGGTACAGACGCAAGC 58.773 50.000 0.00 0.00 45.62 4.01
490 492 5.814764 TTTTTAACAAGGTACAGACGCAA 57.185 34.783 0.00 0.00 0.00 4.85
510 512 8.153550 AGGCTACTCATCGATGATAGAATTTTT 58.846 33.333 29.33 13.02 36.02 1.94
511 513 7.675062 AGGCTACTCATCGATGATAGAATTTT 58.325 34.615 29.33 14.02 36.02 1.82
512 514 7.238486 AGGCTACTCATCGATGATAGAATTT 57.762 36.000 29.33 14.96 36.02 1.82
513 515 6.849085 AGGCTACTCATCGATGATAGAATT 57.151 37.500 29.33 18.72 36.02 2.17
514 516 6.350864 CCAAGGCTACTCATCGATGATAGAAT 60.351 42.308 29.33 20.46 36.02 2.40
515 517 5.047731 CCAAGGCTACTCATCGATGATAGAA 60.048 44.000 29.33 17.39 36.02 2.10
516 518 4.460731 CCAAGGCTACTCATCGATGATAGA 59.539 45.833 29.33 19.03 36.02 1.98
517 519 4.460731 TCCAAGGCTACTCATCGATGATAG 59.539 45.833 27.43 25.94 36.02 2.08
518 520 4.407365 TCCAAGGCTACTCATCGATGATA 58.593 43.478 27.43 19.01 36.02 2.15
551 553 2.541178 GCATCTACTAGTAGCGTTGCGT 60.541 50.000 22.87 2.54 33.32 5.24
556 558 3.632604 ACACATGCATCTACTAGTAGCGT 59.367 43.478 22.87 12.33 33.32 5.07
557 559 4.222886 GACACATGCATCTACTAGTAGCG 58.777 47.826 22.87 17.10 33.32 4.26
558 560 4.551388 GGACACATGCATCTACTAGTAGC 58.449 47.826 22.87 14.11 33.32 3.58
559 561 4.830046 AGGGACACATGCATCTACTAGTAG 59.170 45.833 21.87 21.87 34.56 2.57
560 562 4.804597 AGGGACACATGCATCTACTAGTA 58.195 43.478 0.00 1.89 0.00 1.82
611 613 0.245539 GCATCACATTGCCAGTTGCT 59.754 50.000 0.00 0.00 42.00 3.91
621 623 3.117888 AGGATTAAGGGACGCATCACATT 60.118 43.478 0.00 0.00 0.00 2.71
656 658 3.127548 GTGGTGCAATGAGACTGTTATGG 59.872 47.826 0.00 0.00 0.00 2.74
673 675 3.333414 CAACGAGCAGGTGTGGTG 58.667 61.111 0.00 0.00 33.41 4.17
695 697 5.842328 TCGGAAATGATATGGTTAGGTAGGT 59.158 40.000 0.00 0.00 0.00 3.08
696 698 6.354794 TCGGAAATGATATGGTTAGGTAGG 57.645 41.667 0.00 0.00 0.00 3.18
697 699 6.369065 GCTTCGGAAATGATATGGTTAGGTAG 59.631 42.308 0.00 0.00 0.00 3.18
698 700 6.183361 TGCTTCGGAAATGATATGGTTAGGTA 60.183 38.462 0.00 0.00 0.00 3.08
887 2277 3.135457 CGTGCATGGCATGGCTGA 61.135 61.111 27.48 0.54 41.91 4.26
919 2309 1.456196 TAGCCCGCGGAGAAGAGATG 61.456 60.000 30.73 7.40 0.00 2.90
955 2345 1.293924 CGATTTGCGGATGAAGCTCT 58.706 50.000 0.00 0.00 36.03 4.09
2469 3876 0.467290 TGAACTCAACCTTGGTGCCC 60.467 55.000 0.00 0.00 0.00 5.36
2517 3924 6.904954 TTTAATTTTTAAACAGCGCTCTCG 57.095 33.333 7.13 0.00 39.07 4.04
2559 3966 1.578915 CCGTACGTTAATCCGTTGTCG 59.421 52.381 15.21 1.50 42.00 4.35
2650 5631 4.252073 TGACTGACTCGTTCTAGGAGTAC 58.748 47.826 2.38 0.00 42.66 2.73
2655 5636 2.164422 TGCATGACTGACTCGTTCTAGG 59.836 50.000 0.00 0.00 0.00 3.02
2656 5637 3.494045 TGCATGACTGACTCGTTCTAG 57.506 47.619 0.00 0.00 0.00 2.43
2658 5639 2.614779 CATGCATGACTGACTCGTTCT 58.385 47.619 22.59 0.00 0.00 3.01
2659 5640 1.061711 GCATGCATGACTGACTCGTTC 59.938 52.381 30.64 3.82 0.00 3.95
2660 5641 1.081892 GCATGCATGACTGACTCGTT 58.918 50.000 30.64 0.00 0.00 3.85
2722 5727 2.212466 GCGAAAAGTAAAACACGCACAC 59.788 45.455 0.00 0.00 44.29 3.82
2723 5728 2.442424 GCGAAAAGTAAAACACGCACA 58.558 42.857 0.00 0.00 44.29 4.57
2726 5731 3.972502 AGATTGCGAAAAGTAAAACACGC 59.027 39.130 0.00 0.00 44.95 5.34
2727 5732 5.607359 GCAAGATTGCGAAAAGTAAAACACG 60.607 40.000 1.16 0.00 45.11 4.49
2789 5810 4.096081 CCGTACGTCAAGAGTAGGAATCTT 59.904 45.833 15.21 0.00 37.49 2.40
2790 5811 3.626670 CCGTACGTCAAGAGTAGGAATCT 59.373 47.826 15.21 0.00 33.32 2.40
2791 5812 3.376546 ACCGTACGTCAAGAGTAGGAATC 59.623 47.826 15.21 0.00 33.32 2.52
2792 5813 3.350833 ACCGTACGTCAAGAGTAGGAAT 58.649 45.455 15.21 0.00 33.32 3.01
2793 5814 2.783135 ACCGTACGTCAAGAGTAGGAA 58.217 47.619 15.21 0.00 33.32 3.36
2794 5815 2.479566 ACCGTACGTCAAGAGTAGGA 57.520 50.000 15.21 0.00 33.32 2.94
2795 5816 4.685169 TTTACCGTACGTCAAGAGTAGG 57.315 45.455 15.21 0.00 0.00 3.18
2796 5817 5.091431 CCTTTTACCGTACGTCAAGAGTAG 58.909 45.833 15.21 0.00 0.00 2.57
2797 5818 4.082787 CCCTTTTACCGTACGTCAAGAGTA 60.083 45.833 15.21 5.15 0.00 2.59
2826 5847 0.874175 TCACGTTGACTCACCGCAAG 60.874 55.000 0.00 0.00 0.00 4.01
2902 5924 6.224584 GCCCTATGCTACTTTAGGTTTCTAG 58.775 44.000 0.00 0.00 34.35 2.43
2913 5935 2.356135 CAAACACGCCCTATGCTACTT 58.644 47.619 0.00 0.00 38.05 2.24
2914 5936 1.406887 CCAAACACGCCCTATGCTACT 60.407 52.381 0.00 0.00 38.05 2.57
2915 5937 1.014352 CCAAACACGCCCTATGCTAC 58.986 55.000 0.00 0.00 38.05 3.58
2916 5938 0.616371 ACCAAACACGCCCTATGCTA 59.384 50.000 0.00 0.00 38.05 3.49
2919 5941 0.109319 GCAACCAAACACGCCCTATG 60.109 55.000 0.00 0.00 0.00 2.23
2933 5955 3.991367 ACTACTGTTCACTACTGCAACC 58.009 45.455 0.00 0.00 0.00 3.77
2937 5959 3.390135 TGCAACTACTGTTCACTACTGC 58.610 45.455 0.00 0.00 33.52 4.40
2938 5960 5.615544 GCAATGCAACTACTGTTCACTACTG 60.616 44.000 0.00 0.00 33.52 2.74
2942 5964 3.213506 TGCAATGCAACTACTGTTCACT 58.786 40.909 5.01 0.00 34.76 3.41
2943 5965 3.624326 TGCAATGCAACTACTGTTCAC 57.376 42.857 5.01 0.00 34.76 3.18
2944 5966 7.806409 ATATATGCAATGCAACTACTGTTCA 57.194 32.000 13.45 0.00 43.62 3.18
2945 5967 9.173939 GAAATATATGCAATGCAACTACTGTTC 57.826 33.333 13.45 6.82 43.62 3.18
2953 5975 7.916977 TGAGTGAAGAAATATATGCAATGCAAC 59.083 33.333 13.45 0.65 43.62 4.17
2954 5976 7.998580 TGAGTGAAGAAATATATGCAATGCAA 58.001 30.769 13.45 1.99 43.62 4.08
2966 5988 2.573462 AGCCAGGCTGAGTGAAGAAATA 59.427 45.455 15.24 0.00 37.57 1.40
2968 5990 0.767375 AGCCAGGCTGAGTGAAGAAA 59.233 50.000 15.24 0.00 37.57 2.52
2973 5995 1.644509 TTTAGAGCCAGGCTGAGTGA 58.355 50.000 22.26 0.00 39.88 3.41
3001 6023 5.443283 ACAACTTGCAGATGTCCATATGAT 58.557 37.500 3.65 0.00 32.07 2.45
3013 6036 1.134848 GGCAACCAAACAACTTGCAGA 60.135 47.619 4.18 0.00 41.77 4.26
3071 6094 5.066246 CCAATGCAGTCAACCAAACAAAAAT 59.934 36.000 0.00 0.00 0.00 1.82
3072 6095 4.394300 CCAATGCAGTCAACCAAACAAAAA 59.606 37.500 0.00 0.00 0.00 1.94
3073 6096 3.937706 CCAATGCAGTCAACCAAACAAAA 59.062 39.130 0.00 0.00 0.00 2.44
3086 6109 3.376078 CGCTTGGGCCAATGCAGT 61.376 61.111 28.08 0.00 40.13 4.40
3107 6130 2.033550 GCAACCAAACACCGTGTTCATA 59.966 45.455 17.11 0.00 40.14 2.15
3115 6138 0.589223 ATACGTGCAACCAAACACCG 59.411 50.000 0.00 0.00 33.09 4.94
3132 6155 8.601047 ATGCTAGCTCTTAATCATACCTCATA 57.399 34.615 17.23 0.00 0.00 2.15
3175 6198 4.100808 CCCTTCATCTGCTAGCTCTTAACT 59.899 45.833 17.23 0.00 0.00 2.24
3180 6203 1.422531 CCCCTTCATCTGCTAGCTCT 58.577 55.000 17.23 0.00 0.00 4.09
3196 6219 1.272147 ACACTGCATTTCTTCTCCCCC 60.272 52.381 0.00 0.00 0.00 5.40
3234 6257 3.044305 GCTCACTGTCCACCGCAC 61.044 66.667 0.00 0.00 0.00 5.34
3273 6296 1.078848 GCCCATGACTTCGTGCTCT 60.079 57.895 0.00 0.00 0.00 4.09
3366 6526 1.507141 GCACACTGACGGGGTTCTTG 61.507 60.000 0.00 0.00 0.00 3.02
3444 6604 2.584492 CTGTGGTAGCATCATCGTCA 57.416 50.000 0.00 0.00 0.00 4.35
3457 6617 2.356313 CTCGCGTCTTGCTGTGGT 60.356 61.111 5.77 0.00 43.27 4.16
3484 6644 2.809601 CCGGCGTGGTTTCTCTCG 60.810 66.667 6.01 0.00 0.00 4.04
3497 6657 3.685272 GCTTAATTATTCCTCTAGCCGGC 59.315 47.826 21.89 21.89 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.