Multiple sequence alignment - TraesCS4D01G238400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G238400 chr4D 100.000 6344 0 0 1 6344 400652029 400658372 0.000000e+00 11716
1 TraesCS4D01G238400 chr4D 85.405 185 17 4 3209 3391 97363165 97362989 3.910000e-42 183
2 TraesCS4D01G238400 chr4D 85.405 185 17 7 3209 3391 241249679 241249503 3.910000e-42 183
3 TraesCS4D01G238400 chr4B 95.839 3437 100 15 516 3931 495020062 495023476 0.000000e+00 5515
4 TraesCS4D01G238400 chr4B 95.900 1244 30 12 3926 5160 495023638 495024869 0.000000e+00 1995
5 TraesCS4D01G238400 chr4B 94.393 642 24 7 5105 5736 495024850 495025489 0.000000e+00 976
6 TraesCS4D01G238400 chr4B 87.937 572 28 15 5808 6344 495025523 495026088 2.490000e-178 636
7 TraesCS4D01G238400 chr4B 86.919 344 37 4 83 426 495019663 495019998 4.640000e-101 379
8 TraesCS4D01G238400 chr4A 94.520 3248 118 24 455 3662 58522222 58525449 0.000000e+00 4957
9 TraesCS4D01G238400 chr4A 94.199 1517 55 13 3572 5083 58525454 58526942 0.000000e+00 2283
10 TraesCS4D01G238400 chr4A 93.508 955 37 8 5100 6031 58527059 58528011 0.000000e+00 1397
11 TraesCS4D01G238400 chr4A 94.495 327 15 1 6021 6344 58528295 58528621 9.500000e-138 501
12 TraesCS4D01G238400 chr4A 87.640 178 20 1 84 261 58521581 58521756 8.340000e-49 206
13 TraesCS4D01G238400 chr4A 85.714 154 16 3 277 429 58522080 58522228 2.370000e-34 158
14 TraesCS4D01G238400 chr3D 82.394 284 27 8 2927 3187 589258306 589258023 6.400000e-55 226
15 TraesCS4D01G238400 chrUn 85.405 185 17 8 3209 3391 304291609 304291433 3.910000e-42 183
16 TraesCS4D01G238400 chrUn 86.127 173 15 7 3217 3388 45133050 45133214 1.820000e-40 178
17 TraesCS4D01G238400 chr6D 85.714 182 16 8 3209 3388 430465436 430465609 3.910000e-42 183
18 TraesCS4D01G238400 chr1A 85.143 175 17 7 3215 3388 94740168 94740334 3.040000e-38 171
19 TraesCS4D01G238400 chr3B 84.571 175 18 4 3215 3388 25246252 25246418 1.410000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G238400 chr4D 400652029 400658372 6343 False 11716.000000 11716 100.000000 1 6344 1 chr4D.!!$F1 6343
1 TraesCS4D01G238400 chr4B 495019663 495026088 6425 False 1900.200000 5515 92.197600 83 6344 5 chr4B.!!$F1 6261
2 TraesCS4D01G238400 chr4A 58521581 58528621 7040 False 1583.666667 4957 91.679333 84 6344 6 chr4A.!!$F1 6260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.035317 TGCTGAGAAATGCGACCAGT 59.965 50.000 0.00 0.0 0.00 4.00 F
421 731 0.036105 ACGGCACATGAATCAGCAGA 60.036 50.000 0.00 0.0 0.00 4.26 F
422 732 0.376152 CGGCACATGAATCAGCAGAC 59.624 55.000 0.00 0.0 0.00 3.51 F
465 801 0.984230 TGAGGGGTCTAAGCAAGGTG 59.016 55.000 0.00 0.0 0.00 4.00 F
1065 1407 1.060622 GTACGAGCAGGACGACGAG 59.939 63.158 0.00 0.0 34.70 4.18 F
1340 1702 1.467920 CCCATTCTGTTTCCAGGCTC 58.532 55.000 0.00 0.0 39.31 4.70 F
2526 2893 0.609131 CGCATTCCCCTTGTTCCTGT 60.609 55.000 0.00 0.0 0.00 4.00 F
2619 2986 1.136329 AGCCCTGTCCCAAGTGTCAT 61.136 55.000 0.00 0.0 0.00 3.06 F
4475 5114 2.165167 CAGGCTTTTCAGATCAAGGCA 58.835 47.619 16.27 0.0 45.70 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1407 0.680280 TCAGGTAGCAGTCCTCGTCC 60.680 60.000 0.00 0.0 32.37 4.79 R
2064 2431 1.476891 CCTTCGCTGGTACTTAGAGCA 59.523 52.381 0.00 0.0 32.70 4.26 R
2114 2481 2.436115 GTTGGCGTGGAGGTAGGC 60.436 66.667 0.00 0.0 0.00 3.93 R
2418 2785 4.260212 CCTTTGACACGTATAGCATTTCCG 60.260 45.833 0.00 0.0 0.00 4.30 R
2526 2893 0.545071 TCCAGAGCTCCCACATCACA 60.545 55.000 10.93 0.0 0.00 3.58 R
2556 2923 3.119352 TCACAGTCTCTGATTCATCACGG 60.119 47.826 3.70 0.0 35.18 4.94 R
4272 4911 0.957362 GCCTTGCTTGCTCTGTTCTT 59.043 50.000 0.00 0.0 0.00 2.52 R
4615 5254 5.699097 TTTTCAAGGAAACCAGATAACCG 57.301 39.130 0.00 0.0 30.83 4.44 R
6144 7268 0.594110 GCGAATAGAGAGGAGGGACG 59.406 60.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.880054 CTCCTGTTCACGGATACAAAAAT 57.120 39.130 0.00 0.00 0.00 1.82
23 24 6.254281 CTCCTGTTCACGGATACAAAAATT 57.746 37.500 0.00 0.00 0.00 1.82
24 25 7.372451 CTCCTGTTCACGGATACAAAAATTA 57.628 36.000 0.00 0.00 0.00 1.40
25 26 7.747155 TCCTGTTCACGGATACAAAAATTAA 57.253 32.000 0.00 0.00 0.00 1.40
26 27 7.812648 TCCTGTTCACGGATACAAAAATTAAG 58.187 34.615 0.00 0.00 0.00 1.85
27 28 7.662258 TCCTGTTCACGGATACAAAAATTAAGA 59.338 33.333 0.00 0.00 0.00 2.10
28 29 8.293867 CCTGTTCACGGATACAAAAATTAAGAA 58.706 33.333 0.00 0.00 0.00 2.52
29 30 9.113876 CTGTTCACGGATACAAAAATTAAGAAC 57.886 33.333 0.00 0.00 0.00 3.01
30 31 8.622157 TGTTCACGGATACAAAAATTAAGAACA 58.378 29.630 0.00 0.00 38.36 3.18
31 32 9.453325 GTTCACGGATACAAAAATTAAGAACAA 57.547 29.630 0.00 0.00 32.91 2.83
32 33 9.453325 TTCACGGATACAAAAATTAAGAACAAC 57.547 29.630 0.00 0.00 0.00 3.32
33 34 7.799447 TCACGGATACAAAAATTAAGAACAACG 59.201 33.333 0.00 0.00 0.00 4.10
34 35 7.588488 CACGGATACAAAAATTAAGAACAACGT 59.412 33.333 0.00 0.00 0.00 3.99
35 36 7.588488 ACGGATACAAAAATTAAGAACAACGTG 59.412 33.333 0.00 0.00 0.00 4.49
36 37 7.799447 CGGATACAAAAATTAAGAACAACGTGA 59.201 33.333 0.00 0.00 0.00 4.35
37 38 9.453325 GGATACAAAAATTAAGAACAACGTGAA 57.547 29.630 0.00 0.00 0.00 3.18
40 41 8.389586 ACAAAAATTAAGAACAACGTGAACTC 57.610 30.769 0.00 0.00 0.00 3.01
41 42 7.486870 ACAAAAATTAAGAACAACGTGAACTCC 59.513 33.333 0.00 0.00 0.00 3.85
42 43 6.687081 AAATTAAGAACAACGTGAACTCCA 57.313 33.333 0.00 0.00 0.00 3.86
43 44 6.877611 AATTAAGAACAACGTGAACTCCAT 57.122 33.333 0.00 0.00 0.00 3.41
44 45 5.666969 TTAAGAACAACGTGAACTCCATG 57.333 39.130 0.00 0.00 37.78 3.66
45 46 3.469008 AGAACAACGTGAACTCCATGA 57.531 42.857 0.00 0.00 35.74 3.07
46 47 3.804036 AGAACAACGTGAACTCCATGAA 58.196 40.909 0.00 0.00 35.74 2.57
47 48 4.389374 AGAACAACGTGAACTCCATGAAT 58.611 39.130 0.00 0.00 35.74 2.57
48 49 4.821805 AGAACAACGTGAACTCCATGAATT 59.178 37.500 0.00 0.00 35.74 2.17
49 50 5.299279 AGAACAACGTGAACTCCATGAATTT 59.701 36.000 0.00 0.00 35.74 1.82
50 51 5.514274 ACAACGTGAACTCCATGAATTTT 57.486 34.783 0.00 0.00 35.74 1.82
51 52 6.627395 ACAACGTGAACTCCATGAATTTTA 57.373 33.333 0.00 0.00 35.74 1.52
52 53 7.033530 ACAACGTGAACTCCATGAATTTTAA 57.966 32.000 0.00 0.00 35.74 1.52
53 54 7.138736 ACAACGTGAACTCCATGAATTTTAAG 58.861 34.615 0.00 0.00 35.74 1.85
54 55 5.699839 ACGTGAACTCCATGAATTTTAAGC 58.300 37.500 0.00 0.00 35.74 3.09
55 56 5.240623 ACGTGAACTCCATGAATTTTAAGCA 59.759 36.000 0.00 0.00 35.74 3.91
56 57 6.071952 ACGTGAACTCCATGAATTTTAAGCAT 60.072 34.615 0.00 0.00 35.74 3.79
57 58 6.252015 CGTGAACTCCATGAATTTTAAGCATG 59.748 38.462 0.00 0.00 39.20 4.06
58 59 6.035327 GTGAACTCCATGAATTTTAAGCATGC 59.965 38.462 10.51 10.51 38.40 4.06
59 60 4.675510 ACTCCATGAATTTTAAGCATGCG 58.324 39.130 13.01 0.00 38.40 4.73
60 61 4.158394 ACTCCATGAATTTTAAGCATGCGT 59.842 37.500 13.01 12.35 38.40 5.24
61 62 4.422840 TCCATGAATTTTAAGCATGCGTG 58.577 39.130 16.84 0.09 38.40 5.34
62 63 4.157472 TCCATGAATTTTAAGCATGCGTGA 59.843 37.500 16.84 5.02 38.40 4.35
63 64 5.045215 CCATGAATTTTAAGCATGCGTGAT 58.955 37.500 16.84 0.00 38.40 3.06
64 65 5.051307 CCATGAATTTTAAGCATGCGTGATG 60.051 40.000 16.84 2.19 38.40 3.07
65 66 4.422840 TGAATTTTAAGCATGCGTGATGG 58.577 39.130 16.84 0.00 31.99 3.51
66 67 4.157472 TGAATTTTAAGCATGCGTGATGGA 59.843 37.500 16.84 0.00 31.99 3.41
67 68 3.485947 TTTTAAGCATGCGTGATGGAC 57.514 42.857 16.84 0.00 31.99 4.02
68 69 2.401583 TTAAGCATGCGTGATGGACT 57.598 45.000 16.84 0.00 31.99 3.85
69 70 2.401583 TAAGCATGCGTGATGGACTT 57.598 45.000 16.84 5.56 31.99 3.01
70 71 1.538047 AAGCATGCGTGATGGACTTT 58.462 45.000 13.01 0.00 31.99 2.66
71 72 1.538047 AGCATGCGTGATGGACTTTT 58.462 45.000 13.01 0.00 31.99 2.27
72 73 1.888512 AGCATGCGTGATGGACTTTTT 59.111 42.857 13.01 0.00 31.99 1.94
141 142 4.081420 ACAACAAGCACAATGTGGGTTAAA 60.081 37.500 15.78 0.00 33.64 1.52
145 146 5.163364 ACAAGCACAATGTGGGTTAAAATCA 60.163 36.000 15.78 0.00 33.64 2.57
173 174 6.197276 CAGATGGTGCTTTTTATCTCGAATG 58.803 40.000 0.00 0.00 0.00 2.67
174 175 4.355543 TGGTGCTTTTTATCTCGAATGC 57.644 40.909 0.00 0.00 0.00 3.56
187 188 1.660607 TCGAATGCTGAGAAATGCGAC 59.339 47.619 0.00 0.00 28.79 5.19
191 192 0.035317 TGCTGAGAAATGCGACCAGT 59.965 50.000 0.00 0.00 0.00 4.00
257 258 3.045634 ACGGTATGGATGGGATCTCAAA 58.954 45.455 0.00 0.00 0.00 2.69
261 262 4.823989 GGTATGGATGGGATCTCAAACTTG 59.176 45.833 0.00 0.00 0.00 3.16
320 629 1.197721 GACCTGAGCATTGGTTGTTCG 59.802 52.381 0.00 0.00 38.32 3.95
335 644 5.123186 TGGTTGTTCGTCAATTAGCTAATGG 59.877 40.000 19.53 16.64 38.38 3.16
410 720 1.888512 AGAGAAAATTGCACGGCACAT 59.111 42.857 0.00 0.00 38.71 3.21
411 721 1.987770 GAGAAAATTGCACGGCACATG 59.012 47.619 0.00 0.00 38.71 3.21
412 722 1.612950 AGAAAATTGCACGGCACATGA 59.387 42.857 0.00 0.00 38.71 3.07
414 724 2.747396 AAATTGCACGGCACATGAAT 57.253 40.000 0.00 0.00 38.71 2.57
417 727 0.522626 TTGCACGGCACATGAATCAG 59.477 50.000 0.00 0.00 38.71 2.90
418 728 1.226491 GCACGGCACATGAATCAGC 60.226 57.895 0.00 0.00 0.00 4.26
419 729 1.925415 GCACGGCACATGAATCAGCA 61.925 55.000 0.00 0.00 0.00 4.41
420 730 0.098200 CACGGCACATGAATCAGCAG 59.902 55.000 0.00 0.00 0.00 4.24
421 731 0.036105 ACGGCACATGAATCAGCAGA 60.036 50.000 0.00 0.00 0.00 4.26
422 732 0.376152 CGGCACATGAATCAGCAGAC 59.624 55.000 0.00 0.00 0.00 3.51
423 733 1.747709 GGCACATGAATCAGCAGACT 58.252 50.000 0.00 0.00 0.00 3.24
424 734 2.739609 CGGCACATGAATCAGCAGACTA 60.740 50.000 0.00 0.00 0.00 2.59
425 735 3.273434 GGCACATGAATCAGCAGACTAA 58.727 45.455 0.00 0.00 0.00 2.24
426 736 3.311871 GGCACATGAATCAGCAGACTAAG 59.688 47.826 0.00 0.00 0.00 2.18
427 737 3.242673 GCACATGAATCAGCAGACTAAGC 60.243 47.826 0.00 0.00 0.00 3.09
428 738 3.937079 CACATGAATCAGCAGACTAAGCA 59.063 43.478 0.00 0.00 0.00 3.91
429 739 4.393990 CACATGAATCAGCAGACTAAGCAA 59.606 41.667 0.00 0.00 0.00 3.91
430 740 4.634883 ACATGAATCAGCAGACTAAGCAAG 59.365 41.667 0.00 0.00 0.00 4.01
431 741 3.603532 TGAATCAGCAGACTAAGCAAGG 58.396 45.455 0.00 0.00 0.00 3.61
432 742 3.008375 TGAATCAGCAGACTAAGCAAGGT 59.992 43.478 0.00 0.00 0.00 3.50
433 743 2.462456 TCAGCAGACTAAGCAAGGTG 57.538 50.000 0.00 0.00 0.00 4.00
434 744 1.002430 TCAGCAGACTAAGCAAGGTGG 59.998 52.381 0.00 0.00 0.00 4.61
435 745 1.002430 CAGCAGACTAAGCAAGGTGGA 59.998 52.381 0.00 0.00 0.00 4.02
436 746 1.002544 AGCAGACTAAGCAAGGTGGAC 59.997 52.381 0.00 0.00 0.00 4.02
437 747 1.002544 GCAGACTAAGCAAGGTGGACT 59.997 52.381 0.00 0.00 0.00 3.85
438 748 2.551071 GCAGACTAAGCAAGGTGGACTT 60.551 50.000 0.00 0.00 41.00 3.01
439 749 3.744660 CAGACTAAGCAAGGTGGACTTT 58.255 45.455 0.00 0.00 37.29 2.66
440 750 4.137543 CAGACTAAGCAAGGTGGACTTTT 58.862 43.478 0.00 0.00 37.29 2.27
441 751 4.580580 CAGACTAAGCAAGGTGGACTTTTT 59.419 41.667 0.00 0.00 37.29 1.94
465 801 0.984230 TGAGGGGTCTAAGCAAGGTG 59.016 55.000 0.00 0.00 0.00 4.00
497 833 1.273886 GAGTTCAGTGGAGACAGGGAC 59.726 57.143 0.00 0.00 44.46 4.46
881 1223 1.551964 TTCCTCCCTCCCTACCCCT 60.552 63.158 0.00 0.00 0.00 4.79
953 1295 1.544246 GAAACCCCTATTTGTTGCGCT 59.456 47.619 9.73 0.00 0.00 5.92
1065 1407 1.060622 GTACGAGCAGGACGACGAG 59.939 63.158 0.00 0.00 34.70 4.18
1068 1410 2.486042 GAGCAGGACGACGAGGAC 59.514 66.667 0.00 0.00 0.00 3.85
1229 1587 1.485066 TCCCCGATTGCTTCTCTTACC 59.515 52.381 0.00 0.00 0.00 2.85
1240 1598 3.683340 GCTTCTCTTACCGACGGATTTTT 59.317 43.478 23.38 0.00 0.00 1.94
1310 1672 1.604378 GCAGGTGACTATGTGGCCT 59.396 57.895 3.32 0.00 40.21 5.19
1340 1702 1.467920 CCCATTCTGTTTCCAGGCTC 58.532 55.000 0.00 0.00 39.31 4.70
1909 2276 2.147958 ACGAAGAAAATGGCGCAACTA 58.852 42.857 10.83 0.00 0.00 2.24
1938 2305 9.823098 CATCTTCATTTAGCTCTGTATTATTGC 57.177 33.333 0.00 0.00 0.00 3.56
1939 2306 8.076714 TCTTCATTTAGCTCTGTATTATTGCG 57.923 34.615 0.00 0.00 0.00 4.85
1987 2354 5.105351 GCACAAAATTAACCTAGGGAAGCAT 60.105 40.000 14.81 0.00 0.00 3.79
2084 2451 1.476891 TGCTCTAAGTACCAGCGAAGG 59.523 52.381 0.00 0.00 35.81 3.46
2418 2785 2.652530 CCCAGCACACCACATTGC 59.347 61.111 0.00 0.00 39.16 3.56
2508 2875 4.083324 TGTTTTAATTGCTCCTCAGAAGCG 60.083 41.667 0.00 0.00 0.00 4.68
2526 2893 0.609131 CGCATTCCCCTTGTTCCTGT 60.609 55.000 0.00 0.00 0.00 4.00
2556 2923 2.617774 GGAGCTCTGGATCAAGAAATGC 59.382 50.000 14.64 1.46 0.00 3.56
2619 2986 1.136329 AGCCCTGTCCCAAGTGTCAT 61.136 55.000 0.00 0.00 0.00 3.06
2852 3219 6.127647 CCATACAAACTGAAAGCACCACATAT 60.128 38.462 0.00 0.00 37.60 1.78
3127 3501 3.878699 GACTACTCTACCACTGAGCTACC 59.121 52.174 0.00 0.00 35.12 3.18
3499 3875 6.418101 ACTTTGATGCTGGTGAAGTACATAT 58.582 36.000 0.00 0.00 0.00 1.78
3688 4157 6.116126 AGCATATGGAGGAAAGTCTTGTAAC 58.884 40.000 4.56 0.00 0.00 2.50
3716 4185 7.336161 ATAGGCGTATAGCTTATCTAACCTG 57.664 40.000 0.00 0.00 43.55 4.00
3717 4186 6.890814 ATAGGCGTATAGCTTATCTAACCTGT 59.109 38.462 0.00 0.00 43.55 4.00
3793 4263 2.613691 GTACGACTTATGGTGTGTGGG 58.386 52.381 0.00 0.00 0.00 4.61
3832 4302 2.492881 TGCTCTGCCAATTGTGTAATGG 59.507 45.455 4.43 0.00 0.00 3.16
3922 4392 9.729023 CACATATCTGATCGGAAATCTAGATAC 57.271 37.037 8.65 3.61 32.03 2.24
3936 4573 9.289782 GAAATCTAGATACCGTAGTAGGGTAAA 57.710 37.037 22.20 11.92 41.35 2.01
3937 4574 9.819754 AAATCTAGATACCGTAGTAGGGTAAAT 57.180 33.333 22.20 16.39 41.35 1.40
3990 4627 3.165071 CAAGGGTCATTACAGGCCTTTT 58.835 45.455 0.00 0.00 0.00 2.27
3991 4628 2.807676 AGGGTCATTACAGGCCTTTTG 58.192 47.619 0.00 0.00 0.00 2.44
4017 4654 3.885297 GCATGTGCCTGACAGGTTATAAT 59.115 43.478 22.58 7.30 38.67 1.28
4019 4656 5.707298 GCATGTGCCTGACAGGTTATAATAT 59.293 40.000 22.58 5.70 38.67 1.28
4020 4657 6.207417 GCATGTGCCTGACAGGTTATAATATT 59.793 38.462 22.58 0.00 38.67 1.28
4093 4732 4.460263 TGACTAAGCTGATCTCCTCTCTC 58.540 47.826 0.00 0.00 0.00 3.20
4094 4733 4.165950 TGACTAAGCTGATCTCCTCTCTCT 59.834 45.833 0.00 0.00 0.00 3.10
4095 4734 5.129368 ACTAAGCTGATCTCCTCTCTCTT 57.871 43.478 0.00 0.00 0.00 2.85
4272 4911 4.925646 CGATTCACAGAAGATCAGTCAACA 59.074 41.667 0.00 0.00 0.00 3.33
4281 4920 6.145858 CAGAAGATCAGTCAACAAGAACAGAG 59.854 42.308 0.00 0.00 0.00 3.35
4475 5114 2.165167 CAGGCTTTTCAGATCAAGGCA 58.835 47.619 16.27 0.00 45.70 4.75
4820 5460 9.327628 TGTGCAAAGTAAATTGTACTAACTGTA 57.672 29.630 9.13 0.00 43.59 2.74
4963 5603 2.221981 GGACTCTGCTGAACAAAGTTCG 59.778 50.000 5.53 2.42 0.00 3.95
5002 5642 4.263018 TCAGGATGAACACAAGAGTCAG 57.737 45.455 0.00 0.00 45.97 3.51
5004 5644 2.636893 AGGATGAACACAAGAGTCAGCT 59.363 45.455 0.00 0.00 0.00 4.24
5069 5710 7.999679 TCCTTCATACAAGGCTTAAATTCATG 58.000 34.615 0.00 0.00 37.34 3.07
5096 5737 9.126151 TGATAAGGATCACTACTAGAAGTTCAG 57.874 37.037 5.50 3.46 37.15 3.02
5097 5738 9.344772 GATAAGGATCACTACTAGAAGTTCAGA 57.655 37.037 5.50 0.00 31.78 3.27
5098 5739 7.639113 AAGGATCACTACTAGAAGTTCAGAG 57.361 40.000 5.50 4.54 0.00 3.35
5110 5851 6.842437 AGAAGTTCAGAGTAGTCATTAGCA 57.158 37.500 5.50 0.00 0.00 3.49
5190 5973 7.254455 CATATTTTAATATCCGCCTTAGGCTCG 60.254 40.741 21.82 11.09 36.68 5.03
5196 5979 2.816012 GCCTTAGGCTCGTCCCTC 59.184 66.667 17.16 0.00 46.69 4.30
5215 5998 2.100252 CTCACGGGAAAGCGACCTATTA 59.900 50.000 0.00 0.00 0.00 0.98
5238 6021 2.234661 TCAGATGCACGGATCAAGTTCT 59.765 45.455 1.23 0.00 0.00 3.01
5418 6201 8.178313 GTGTTTCTTCAGCTACATAAAGGAATC 58.822 37.037 0.00 0.00 0.00 2.52
5615 6409 5.312079 AGATGACTTTTTGGGAGAGAACTG 58.688 41.667 0.00 0.00 0.00 3.16
5620 6414 5.859495 ACTTTTTGGGAGAGAACTGTAGAG 58.141 41.667 0.00 0.00 0.00 2.43
5705 6505 3.135994 TGGGACGCTGACTTTCTAAAAC 58.864 45.455 0.00 0.00 0.00 2.43
5708 6508 3.186613 GGACGCTGACTTTCTAAAACTGG 59.813 47.826 0.00 0.00 0.00 4.00
6050 7174 2.443390 ACCCGATGGTACCGAGGG 60.443 66.667 27.78 27.78 45.45 4.30
6052 7176 2.496291 CCCGATGGTACCGAGGGTC 61.496 68.421 23.65 9.88 37.09 4.46
6144 7268 4.051237 GTGCTTTCCTTTGGATTTGTGTC 58.949 43.478 0.00 0.00 0.00 3.67
6334 7475 0.382515 CCGGATCTCGAACTGAGGAC 59.617 60.000 0.00 0.00 45.32 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.880054 ATTTTTGTATCCGTGAACAGGAG 57.120 39.130 0.00 0.00 41.66 3.69
1 2 7.662258 TCTTAATTTTTGTATCCGTGAACAGGA 59.338 33.333 0.00 0.00 42.69 3.86
2 3 7.812648 TCTTAATTTTTGTATCCGTGAACAGG 58.187 34.615 0.00 0.00 0.00 4.00
3 4 9.113876 GTTCTTAATTTTTGTATCCGTGAACAG 57.886 33.333 0.00 0.00 32.09 3.16
4 5 8.622157 TGTTCTTAATTTTTGTATCCGTGAACA 58.378 29.630 0.00 0.00 37.25 3.18
5 6 9.453325 TTGTTCTTAATTTTTGTATCCGTGAAC 57.547 29.630 0.00 0.00 0.00 3.18
6 7 9.453325 GTTGTTCTTAATTTTTGTATCCGTGAA 57.547 29.630 0.00 0.00 0.00 3.18
7 8 7.799447 CGTTGTTCTTAATTTTTGTATCCGTGA 59.201 33.333 0.00 0.00 0.00 4.35
8 9 7.588488 ACGTTGTTCTTAATTTTTGTATCCGTG 59.412 33.333 0.00 0.00 0.00 4.94
9 10 7.588488 CACGTTGTTCTTAATTTTTGTATCCGT 59.412 33.333 0.00 0.00 0.00 4.69
10 11 7.799447 TCACGTTGTTCTTAATTTTTGTATCCG 59.201 33.333 0.00 0.00 0.00 4.18
11 12 9.453325 TTCACGTTGTTCTTAATTTTTGTATCC 57.547 29.630 0.00 0.00 0.00 2.59
14 15 9.493206 GAGTTCACGTTGTTCTTAATTTTTGTA 57.507 29.630 0.00 0.00 0.00 2.41
15 16 7.486870 GGAGTTCACGTTGTTCTTAATTTTTGT 59.513 33.333 0.00 0.00 0.00 2.83
16 17 7.486551 TGGAGTTCACGTTGTTCTTAATTTTTG 59.513 33.333 0.00 0.00 0.00 2.44
17 18 7.540299 TGGAGTTCACGTTGTTCTTAATTTTT 58.460 30.769 0.00 0.00 0.00 1.94
18 19 7.090953 TGGAGTTCACGTTGTTCTTAATTTT 57.909 32.000 0.00 0.00 0.00 1.82
19 20 6.687081 TGGAGTTCACGTTGTTCTTAATTT 57.313 33.333 0.00 0.00 0.00 1.82
20 21 6.485313 TCATGGAGTTCACGTTGTTCTTAATT 59.515 34.615 0.00 0.00 0.00 1.40
21 22 5.995282 TCATGGAGTTCACGTTGTTCTTAAT 59.005 36.000 0.00 0.00 0.00 1.40
22 23 5.361427 TCATGGAGTTCACGTTGTTCTTAA 58.639 37.500 0.00 0.00 0.00 1.85
23 24 4.951254 TCATGGAGTTCACGTTGTTCTTA 58.049 39.130 0.00 0.00 0.00 2.10
24 25 3.804036 TCATGGAGTTCACGTTGTTCTT 58.196 40.909 0.00 0.00 0.00 2.52
25 26 3.469008 TCATGGAGTTCACGTTGTTCT 57.531 42.857 0.00 0.00 0.00 3.01
26 27 4.749245 ATTCATGGAGTTCACGTTGTTC 57.251 40.909 0.00 0.00 0.00 3.18
27 28 5.514274 AAATTCATGGAGTTCACGTTGTT 57.486 34.783 0.00 0.00 0.00 2.83
28 29 5.514274 AAAATTCATGGAGTTCACGTTGT 57.486 34.783 0.00 0.00 0.00 3.32
29 30 6.088085 GCTTAAAATTCATGGAGTTCACGTTG 59.912 38.462 0.00 0.00 0.00 4.10
30 31 6.149633 GCTTAAAATTCATGGAGTTCACGTT 58.850 36.000 0.00 0.00 0.00 3.99
31 32 5.240623 TGCTTAAAATTCATGGAGTTCACGT 59.759 36.000 0.00 0.00 0.00 4.49
32 33 5.698832 TGCTTAAAATTCATGGAGTTCACG 58.301 37.500 0.00 0.00 0.00 4.35
33 34 6.035327 GCATGCTTAAAATTCATGGAGTTCAC 59.965 38.462 11.37 0.00 38.33 3.18
34 35 6.101332 GCATGCTTAAAATTCATGGAGTTCA 58.899 36.000 11.37 0.00 38.33 3.18
35 36 5.230726 CGCATGCTTAAAATTCATGGAGTTC 59.769 40.000 17.13 0.00 38.33 3.01
36 37 5.104374 CGCATGCTTAAAATTCATGGAGTT 58.896 37.500 17.13 0.00 38.33 3.01
37 38 4.158394 ACGCATGCTTAAAATTCATGGAGT 59.842 37.500 17.13 0.00 38.33 3.85
38 39 4.501559 CACGCATGCTTAAAATTCATGGAG 59.498 41.667 17.13 0.00 38.33 3.86
39 40 4.157472 TCACGCATGCTTAAAATTCATGGA 59.843 37.500 17.13 0.00 38.33 3.41
40 41 4.422840 TCACGCATGCTTAAAATTCATGG 58.577 39.130 17.13 0.00 38.33 3.66
41 42 5.051307 CCATCACGCATGCTTAAAATTCATG 60.051 40.000 17.13 4.78 40.23 3.07
42 43 5.045215 CCATCACGCATGCTTAAAATTCAT 58.955 37.500 17.13 0.00 0.00 2.57
43 44 4.157472 TCCATCACGCATGCTTAAAATTCA 59.843 37.500 17.13 0.00 0.00 2.57
44 45 4.500477 GTCCATCACGCATGCTTAAAATTC 59.500 41.667 17.13 0.00 0.00 2.17
45 46 4.158394 AGTCCATCACGCATGCTTAAAATT 59.842 37.500 17.13 0.00 0.00 1.82
46 47 3.696051 AGTCCATCACGCATGCTTAAAAT 59.304 39.130 17.13 0.00 0.00 1.82
47 48 3.081061 AGTCCATCACGCATGCTTAAAA 58.919 40.909 17.13 0.00 0.00 1.52
48 49 2.710377 AGTCCATCACGCATGCTTAAA 58.290 42.857 17.13 0.00 0.00 1.52
49 50 2.401583 AGTCCATCACGCATGCTTAA 57.598 45.000 17.13 0.24 0.00 1.85
50 51 2.401583 AAGTCCATCACGCATGCTTA 57.598 45.000 17.13 0.60 0.00 3.09
51 52 1.538047 AAAGTCCATCACGCATGCTT 58.462 45.000 17.13 2.67 0.00 3.91
52 53 1.538047 AAAAGTCCATCACGCATGCT 58.462 45.000 17.13 0.00 0.00 3.79
53 54 2.352503 AAAAAGTCCATCACGCATGC 57.647 45.000 7.91 7.91 0.00 4.06
71 72 9.796120 CCAATAAGTCCATCGCTTTATTAAAAA 57.204 29.630 0.00 0.00 0.00 1.94
72 73 9.179909 TCCAATAAGTCCATCGCTTTATTAAAA 57.820 29.630 0.00 0.00 0.00 1.52
73 74 8.740123 TCCAATAAGTCCATCGCTTTATTAAA 57.260 30.769 0.00 0.00 0.00 1.52
74 75 8.783093 CATCCAATAAGTCCATCGCTTTATTAA 58.217 33.333 0.00 0.00 0.00 1.40
75 76 8.154203 TCATCCAATAAGTCCATCGCTTTATTA 58.846 33.333 0.00 0.00 0.00 0.98
76 77 6.998074 TCATCCAATAAGTCCATCGCTTTATT 59.002 34.615 0.00 0.00 0.00 1.40
77 78 6.428159 GTCATCCAATAAGTCCATCGCTTTAT 59.572 38.462 0.00 0.00 0.00 1.40
78 79 5.758296 GTCATCCAATAAGTCCATCGCTTTA 59.242 40.000 0.00 0.00 0.00 1.85
79 80 4.576463 GTCATCCAATAAGTCCATCGCTTT 59.424 41.667 0.00 0.00 0.00 3.51
80 81 4.130118 GTCATCCAATAAGTCCATCGCTT 58.870 43.478 0.00 0.00 0.00 4.68
81 82 3.134623 TGTCATCCAATAAGTCCATCGCT 59.865 43.478 0.00 0.00 0.00 4.93
112 113 5.108517 CCACATTGTGCTTGTTGTAAACTT 58.891 37.500 11.41 0.00 38.92 2.66
116 117 3.027412 ACCCACATTGTGCTTGTTGTAA 58.973 40.909 11.41 0.00 31.34 2.41
162 163 4.209911 CGCATTTCTCAGCATTCGAGATAA 59.790 41.667 0.00 0.00 39.22 1.75
164 165 2.543012 CGCATTTCTCAGCATTCGAGAT 59.457 45.455 0.00 0.00 39.22 2.75
167 168 1.660607 GTCGCATTTCTCAGCATTCGA 59.339 47.619 0.00 0.00 0.00 3.71
168 169 1.267732 GGTCGCATTTCTCAGCATTCG 60.268 52.381 0.00 0.00 0.00 3.34
169 170 1.739466 TGGTCGCATTTCTCAGCATTC 59.261 47.619 0.00 0.00 0.00 2.67
170 171 1.741706 CTGGTCGCATTTCTCAGCATT 59.258 47.619 0.00 0.00 0.00 3.56
173 174 0.445436 CACTGGTCGCATTTCTCAGC 59.555 55.000 0.00 0.00 0.00 4.26
174 175 0.445436 GCACTGGTCGCATTTCTCAG 59.555 55.000 0.00 0.00 0.00 3.35
187 188 2.124612 TGATGGCGATGGCACTGG 60.125 61.111 1.01 0.00 41.84 4.00
191 192 0.456628 CATTTGTGATGGCGATGGCA 59.543 50.000 1.01 0.00 43.52 4.92
261 262 2.427410 CCGTTTCGCTGCAAGTGC 60.427 61.111 0.00 0.00 46.11 4.40
320 629 6.767902 TCTTGGACATCCATTAGCTAATTGAC 59.232 38.462 19.43 13.94 46.97 3.18
335 644 6.076981 ACAACTTTGACATTCTTGGACATC 57.923 37.500 0.00 0.00 0.00 3.06
369 679 5.968254 TCTTAAGACACCACACGCAATATA 58.032 37.500 0.00 0.00 0.00 0.86
370 680 4.827692 TCTTAAGACACCACACGCAATAT 58.172 39.130 0.00 0.00 0.00 1.28
371 681 4.021807 TCTCTTAAGACACCACACGCAATA 60.022 41.667 0.00 0.00 0.00 1.90
410 720 3.008375 ACCTTGCTTAGTCTGCTGATTCA 59.992 43.478 0.00 0.00 0.00 2.57
411 721 3.373439 CACCTTGCTTAGTCTGCTGATTC 59.627 47.826 0.00 0.00 0.00 2.52
412 722 3.341823 CACCTTGCTTAGTCTGCTGATT 58.658 45.455 0.00 0.00 0.00 2.57
414 724 1.002430 CCACCTTGCTTAGTCTGCTGA 59.998 52.381 0.00 0.00 0.00 4.26
417 727 1.002544 AGTCCACCTTGCTTAGTCTGC 59.997 52.381 0.00 0.00 0.00 4.26
418 728 3.409026 AAGTCCACCTTGCTTAGTCTG 57.591 47.619 0.00 0.00 30.18 3.51
419 729 4.439253 AAAAGTCCACCTTGCTTAGTCT 57.561 40.909 0.00 0.00 32.32 3.24
442 752 3.117284 ACCTTGCTTAGACCCCTCAAAAA 60.117 43.478 0.00 0.00 0.00 1.94
443 753 2.445525 ACCTTGCTTAGACCCCTCAAAA 59.554 45.455 0.00 0.00 0.00 2.44
444 754 2.062636 ACCTTGCTTAGACCCCTCAAA 58.937 47.619 0.00 0.00 0.00 2.69
445 755 1.351017 CACCTTGCTTAGACCCCTCAA 59.649 52.381 0.00 0.00 0.00 3.02
446 756 0.984230 CACCTTGCTTAGACCCCTCA 59.016 55.000 0.00 0.00 0.00 3.86
447 757 1.276622 TCACCTTGCTTAGACCCCTC 58.723 55.000 0.00 0.00 0.00 4.30
448 758 1.351350 GTTCACCTTGCTTAGACCCCT 59.649 52.381 0.00 0.00 0.00 4.79
449 759 1.351350 AGTTCACCTTGCTTAGACCCC 59.649 52.381 0.00 0.00 0.00 4.95
450 760 2.861147 AGTTCACCTTGCTTAGACCC 57.139 50.000 0.00 0.00 0.00 4.46
451 761 5.148651 TCTTAGTTCACCTTGCTTAGACC 57.851 43.478 0.00 0.00 0.00 3.85
452 762 6.092807 CCATTCTTAGTTCACCTTGCTTAGAC 59.907 42.308 0.00 0.00 0.00 2.59
453 763 6.013725 TCCATTCTTAGTTCACCTTGCTTAGA 60.014 38.462 0.00 0.00 0.00 2.10
625 967 0.033504 CAGTTGGCAGACACCTACGT 59.966 55.000 0.00 0.00 39.97 3.57
953 1295 1.906105 AATCAAAGAGGGCGGCGGTA 61.906 55.000 9.78 0.00 0.00 4.02
964 1306 3.893326 TCAGATCAGCCGAATCAAAGA 57.107 42.857 0.00 0.00 0.00 2.52
1065 1407 0.680280 TCAGGTAGCAGTCCTCGTCC 60.680 60.000 0.00 0.00 32.37 4.79
1240 1598 2.278854 GCAAGCACAAGCAAGGAAAAA 58.721 42.857 0.00 0.00 45.49 1.94
1340 1702 1.528586 CAGCATCCGGAAATCGCTTAG 59.471 52.381 9.01 0.00 37.59 2.18
1842 2209 6.918892 TGATTTGTCATTCCTAATACACGG 57.081 37.500 0.00 0.00 0.00 4.94
1933 2300 3.196901 ACAAGTACAGATGGTCCGCAATA 59.803 43.478 0.00 0.00 0.00 1.90
1938 2305 4.082408 TGAAGTACAAGTACAGATGGTCCG 60.082 45.833 12.43 0.00 38.48 4.79
1939 2306 5.401531 TGAAGTACAAGTACAGATGGTCC 57.598 43.478 12.43 0.00 38.48 4.46
1987 2354 2.891580 GCGACTAGGAAGTGATATCCCA 59.108 50.000 0.00 0.00 37.71 4.37
2064 2431 1.476891 CCTTCGCTGGTACTTAGAGCA 59.523 52.381 0.00 0.00 32.70 4.26
2114 2481 2.436115 GTTGGCGTGGAGGTAGGC 60.436 66.667 0.00 0.00 0.00 3.93
2418 2785 4.260212 CCTTTGACACGTATAGCATTTCCG 60.260 45.833 0.00 0.00 0.00 4.30
2508 2875 0.890683 CACAGGAACAAGGGGAATGC 59.109 55.000 0.00 0.00 0.00 3.56
2526 2893 0.545071 TCCAGAGCTCCCACATCACA 60.545 55.000 10.93 0.00 0.00 3.58
2556 2923 3.119352 TCACAGTCTCTGATTCATCACGG 60.119 47.826 3.70 0.00 35.18 4.94
2619 2986 4.506625 CCACCATTCTTCTCCACAGGTTTA 60.507 45.833 0.00 0.00 0.00 2.01
2852 3219 5.602978 AGGAAAGTAGGAAGAAGACAAGACA 59.397 40.000 0.00 0.00 0.00 3.41
2931 3298 4.037565 TCATCGTACCGCATTCTGTTCTAT 59.962 41.667 0.00 0.00 0.00 1.98
3397 3771 4.237724 CTGACGAGCTGATTTGTAACTCA 58.762 43.478 0.00 0.00 0.00 3.41
3499 3875 5.351465 GCAATCGGTATCAAAGAGAGAACAA 59.649 40.000 0.00 0.00 0.00 2.83
3688 4157 7.351223 GTTAGATAAGCTATACGCCTATACCG 58.649 42.308 0.00 0.00 40.39 4.02
3716 4185 6.582636 TGATGGATAGAATACTTCCACACAC 58.417 40.000 0.00 0.00 42.09 3.82
3717 4186 6.806668 TGATGGATAGAATACTTCCACACA 57.193 37.500 0.00 0.00 42.09 3.72
3832 4302 9.832445 TGAATAGGAAACAATAATACTCTGTCC 57.168 33.333 0.00 0.00 0.00 4.02
3899 4369 7.776030 ACGGTATCTAGATTTCCGATCAGATAT 59.224 37.037 34.53 18.97 38.99 1.63
3922 4392 5.359009 TGTCTCTTGATTTACCCTACTACGG 59.641 44.000 0.00 0.00 0.00 4.02
3936 4573 3.323115 TGAAGTCTGCAGTGTCTCTTGAT 59.677 43.478 14.67 0.00 0.00 2.57
3937 4574 2.695147 TGAAGTCTGCAGTGTCTCTTGA 59.305 45.455 14.67 3.93 0.00 3.02
3990 4627 1.611410 CCTGTCAGGCACATGCTAACA 60.611 52.381 5.79 5.30 41.70 2.41
3991 4628 1.089920 CCTGTCAGGCACATGCTAAC 58.910 55.000 5.79 0.95 41.70 2.34
4125 4764 7.696992 AAACTCAAACTTAAGAACAAGTGGA 57.303 32.000 10.09 0.00 38.74 4.02
4272 4911 0.957362 GCCTTGCTTGCTCTGTTCTT 59.043 50.000 0.00 0.00 0.00 2.52
4305 4944 7.787028 TGTATCTGTTGTGGTAGTGCATATAA 58.213 34.615 0.00 0.00 0.00 0.98
4615 5254 5.699097 TTTTCAAGGAAACCAGATAACCG 57.301 39.130 0.00 0.00 30.83 4.44
4820 5460 4.037208 GCACTGATACCTGCAAAGCAATAT 59.963 41.667 0.00 0.00 38.41 1.28
4933 5573 4.202040 TGTTCAGCAGAGTCCAAACAAATG 60.202 41.667 0.00 0.00 0.00 2.32
4963 5603 4.342378 TCCTGACTACACTTCATAGATGGC 59.658 45.833 0.00 0.00 0.00 4.40
5002 5642 4.260784 CCTGATTCGCTACATAAACCAAGC 60.261 45.833 0.00 0.00 0.00 4.01
5004 5644 4.839121 ACCTGATTCGCTACATAAACCAA 58.161 39.130 0.00 0.00 0.00 3.67
5083 5724 9.111613 GCTAATGACTACTCTGAACTTCTAGTA 57.888 37.037 0.00 5.16 0.00 1.82
5085 5726 7.990917 TGCTAATGACTACTCTGAACTTCTAG 58.009 38.462 0.00 0.00 0.00 2.43
5086 5727 7.612244 ACTGCTAATGACTACTCTGAACTTCTA 59.388 37.037 0.00 0.00 0.00 2.10
5087 5728 6.435904 ACTGCTAATGACTACTCTGAACTTCT 59.564 38.462 0.00 0.00 0.00 2.85
5088 5729 6.626302 ACTGCTAATGACTACTCTGAACTTC 58.374 40.000 0.00 0.00 0.00 3.01
5089 5730 6.597832 ACTGCTAATGACTACTCTGAACTT 57.402 37.500 0.00 0.00 0.00 2.66
5091 5732 7.062839 CAGAAACTGCTAATGACTACTCTGAAC 59.937 40.741 0.00 0.00 30.48 3.18
5092 5733 7.093354 CAGAAACTGCTAATGACTACTCTGAA 58.907 38.462 0.00 0.00 30.48 3.02
5093 5734 6.350528 CCAGAAACTGCTAATGACTACTCTGA 60.351 42.308 0.00 0.00 30.48 3.27
5094 5735 5.809562 CCAGAAACTGCTAATGACTACTCTG 59.190 44.000 0.00 0.00 0.00 3.35
5096 5737 5.725362 ACCAGAAACTGCTAATGACTACTC 58.275 41.667 0.00 0.00 0.00 2.59
5097 5738 5.746990 ACCAGAAACTGCTAATGACTACT 57.253 39.130 0.00 0.00 0.00 2.57
5098 5739 5.390991 GCAACCAGAAACTGCTAATGACTAC 60.391 44.000 0.00 0.00 33.20 2.73
5196 5979 2.589798 TAATAGGTCGCTTTCCCGTG 57.410 50.000 0.00 0.00 0.00 4.94
5215 5998 3.272574 ACTTGATCCGTGCATCTGAAT 57.727 42.857 0.00 0.00 0.00 2.57
5238 6021 2.110213 GGGCGTCCACTGTTGTCA 59.890 61.111 0.00 0.00 0.00 3.58
5271 6054 1.474677 CCGCCATGAGCATCTCTTCTT 60.475 52.381 0.00 0.00 44.04 2.52
5418 6201 4.107622 CAAGGCAACAAAAGAGAACACAG 58.892 43.478 0.00 0.00 41.41 3.66
5620 6414 7.482654 TGCAGCACAAATATAGTAGAACATC 57.517 36.000 0.00 0.00 0.00 3.06
5705 6505 4.569966 CAGCTGCTAGTATTCAGTTTCCAG 59.430 45.833 0.00 0.00 33.09 3.86
5708 6508 4.508662 ACCAGCTGCTAGTATTCAGTTTC 58.491 43.478 8.66 0.00 33.09 2.78
5722 6522 1.960689 TCCCAACTTTTAACCAGCTGC 59.039 47.619 8.66 0.00 0.00 5.25
5842 6643 1.823828 GCATCTTGCATTTCTCAGCG 58.176 50.000 0.00 0.00 44.26 5.18
5947 6756 1.398390 CAAGGCAGTATGTTCGAAGCC 59.602 52.381 14.24 14.24 42.31 4.35
6144 7268 0.594110 GCGAATAGAGAGGAGGGACG 59.406 60.000 0.00 0.00 0.00 4.79
6228 7369 0.877213 ACAACTACGACCGTGGCAAC 60.877 55.000 5.20 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.