Multiple sequence alignment - TraesCS4D01G237800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G237800 chr4D 100.000 5245 0 0 1 5245 399963680 399958436 0.000000e+00 9686
1 TraesCS4D01G237800 chr4A 92.664 4539 174 59 789 5245 58115803 58111342 0.000000e+00 6390
2 TraesCS4D01G237800 chr4A 86.792 371 31 8 337 700 58116204 58115845 1.060000e-106 398
3 TraesCS4D01G237800 chr4A 86.692 263 26 6 2910 3170 723594804 723594549 3.090000e-72 283
4 TraesCS4D01G237800 chr4A 92.683 123 8 1 84 205 584045738 584045860 5.400000e-40 176
5 TraesCS4D01G237800 chr4B 91.700 2506 89 45 777 3248 494228103 494225683 0.000000e+00 3365
6 TraesCS4D01G237800 chr4B 94.270 1431 47 13 3245 4643 494225571 494224144 0.000000e+00 2156
7 TraesCS4D01G237800 chr4B 91.840 625 32 11 4640 5245 494223258 494222634 0.000000e+00 854
8 TraesCS4D01G237800 chr4B 82.013 467 15 19 337 762 494228526 494228088 3.030000e-87 333
9 TraesCS4D01G237800 chr5B 90.494 263 18 4 2910 3170 316714386 316714643 1.810000e-89 340
10 TraesCS4D01G237800 chr5B 84.470 264 27 3 87 336 596988493 596988230 1.130000e-61 248
11 TraesCS4D01G237800 chr5B 95.395 152 5 2 3026 3176 455170717 455170867 1.890000e-59 241
12 TraesCS4D01G237800 chr5B 84.112 107 11 3 1144 1247 145926978 145926875 1.200000e-16 99
13 TraesCS4D01G237800 chr7D 89.734 263 16 4 2910 3170 264368085 264368338 5.070000e-85 326
14 TraesCS4D01G237800 chr7D 93.548 124 6 2 2910 3031 304184155 304184032 3.230000e-42 183
15 TraesCS4D01G237800 chr7D 92.800 125 8 1 82 205 617758344 617758468 4.170000e-41 180
16 TraesCS4D01G237800 chrUn 85.348 273 21 6 82 335 296164948 296164676 1.120000e-66 265
17 TraesCS4D01G237800 chrUn 85.348 273 21 6 82 335 296175132 296174860 1.120000e-66 265
18 TraesCS4D01G237800 chrUn 92.000 125 8 2 82 205 306723790 306723667 1.940000e-39 174
19 TraesCS4D01G237800 chr5D 84.191 272 26 10 82 336 408322845 408322574 1.130000e-61 248
20 TraesCS4D01G237800 chr5D 84.112 107 11 3 1144 1247 134483546 134483443 1.200000e-16 99
21 TraesCS4D01G237800 chr7A 97.260 146 3 1 3026 3170 516500080 516500225 4.060000e-61 246
22 TraesCS4D01G237800 chr3D 95.395 152 5 2 3020 3169 324319126 324319277 1.890000e-59 241
23 TraesCS4D01G237800 chr2B 93.252 163 9 2 3010 3170 154991775 154991937 6.790000e-59 239
24 TraesCS4D01G237800 chr2B 83.712 264 25 6 88 336 790214002 790214262 3.160000e-57 233
25 TraesCS4D01G237800 chr2B 82.353 272 31 12 82 336 64072158 64071887 2.460000e-53 220
26 TraesCS4D01G237800 chr6B 83.394 277 24 8 82 336 120800706 120800430 2.440000e-58 237
27 TraesCS4D01G237800 chr7B 82.909 275 27 8 82 336 667195737 667195463 4.090000e-56 230
28 TraesCS4D01G237800 chr7B 94.355 124 5 2 2910 3031 301599053 301599176 6.930000e-44 189
29 TraesCS4D01G237800 chr1B 82.624 282 21 11 82 335 456275506 456275787 1.900000e-54 224
30 TraesCS4D01G237800 chr1B 87.701 187 16 4 152 335 686927316 686927134 1.480000e-50 211
31 TraesCS4D01G237800 chr1B 93.548 124 6 2 2910 3031 192270286 192270163 3.230000e-42 183
32 TraesCS4D01G237800 chr1B 92.000 125 8 2 82 205 27377342 27377219 1.940000e-39 174
33 TraesCS4D01G237800 chr1B 92.000 125 8 2 82 205 27405982 27405859 1.940000e-39 174
34 TraesCS4D01G237800 chr6A 81.071 280 23 12 87 336 129252788 129252509 4.140000e-46 196
35 TraesCS4D01G237800 chr6A 90.141 142 12 2 2886 3025 519520744 519520603 3.230000e-42 183
36 TraesCS4D01G237800 chr2D 80.836 287 23 12 82 336 7411295 7411581 4.140000e-46 196
37 TraesCS4D01G237800 chr1D 81.992 261 17 10 82 312 1250115 1249855 1.490000e-45 195
38 TraesCS4D01G237800 chr5A 84.112 107 11 4 1144 1247 158658409 158658306 1.200000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G237800 chr4D 399958436 399963680 5244 True 9686 9686 100.00000 1 5245 1 chr4D.!!$R1 5244
1 TraesCS4D01G237800 chr4A 58111342 58116204 4862 True 3394 6390 89.72800 337 5245 2 chr4A.!!$R2 4908
2 TraesCS4D01G237800 chr4B 494222634 494228526 5892 True 1677 3365 89.95575 337 5245 4 chr4B.!!$R1 4908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 927 0.036388 AGCGATACAACCCACCACAG 60.036 55.000 0.00 0.00 0.00 3.66 F
1542 1603 1.203038 TGGCATGAAAAGGGAAGCTGA 60.203 47.619 0.00 0.00 0.00 4.26 F
2138 2219 1.225704 GGGCTCAATCCTGTCAGGG 59.774 63.158 19.11 3.14 35.59 4.45 F
3104 3192 0.803768 CCATGAGTTGGTCGCGAGAG 60.804 60.000 10.24 0.00 43.49 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 2203 1.279496 TCACCCCTGACAGGATTGAG 58.721 55.000 23.77 9.47 37.67 3.02 R
2944 3032 1.839424 GCCAAGCCTATCACACCTTT 58.161 50.000 0.00 0.00 0.00 3.11 R
3278 3497 3.551551 CAACAACAGTAAAGCCTTACGC 58.448 45.455 0.00 0.00 42.02 4.42 R
4398 4650 0.106519 ATCGCCTTAAGCCAGCCAAT 60.107 50.000 0.00 0.00 38.78 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.723492 TGAATATGCTCTGACGAACATTG 57.277 39.130 0.00 0.00 29.37 2.82
23 24 5.418676 TGAATATGCTCTGACGAACATTGA 58.581 37.500 0.00 0.00 29.37 2.57
24 25 5.291858 TGAATATGCTCTGACGAACATTGAC 59.708 40.000 0.00 0.00 29.37 3.18
25 26 2.524569 TGCTCTGACGAACATTGACA 57.475 45.000 0.00 0.00 0.00 3.58
26 27 3.044235 TGCTCTGACGAACATTGACAT 57.956 42.857 0.00 0.00 0.00 3.06
27 28 3.402110 TGCTCTGACGAACATTGACATT 58.598 40.909 0.00 0.00 0.00 2.71
28 29 3.187022 TGCTCTGACGAACATTGACATTG 59.813 43.478 0.00 0.00 0.00 2.82
29 30 3.433274 GCTCTGACGAACATTGACATTGA 59.567 43.478 4.40 0.00 0.00 2.57
30 31 4.083855 GCTCTGACGAACATTGACATTGAA 60.084 41.667 4.40 0.00 0.00 2.69
31 32 5.391310 GCTCTGACGAACATTGACATTGAAT 60.391 40.000 4.40 0.00 0.00 2.57
32 33 6.183360 GCTCTGACGAACATTGACATTGAATA 60.183 38.462 4.40 0.00 0.00 1.75
33 34 7.294676 TCTGACGAACATTGACATTGAATAG 57.705 36.000 4.40 0.00 0.00 1.73
34 35 6.313658 TCTGACGAACATTGACATTGAATAGG 59.686 38.462 4.40 0.00 0.00 2.57
35 36 5.163764 TGACGAACATTGACATTGAATAGGC 60.164 40.000 4.40 0.00 0.00 3.93
36 37 4.699735 ACGAACATTGACATTGAATAGGCA 59.300 37.500 4.40 0.00 0.00 4.75
37 38 5.357878 ACGAACATTGACATTGAATAGGCAT 59.642 36.000 4.40 0.00 0.00 4.40
38 39 6.542005 ACGAACATTGACATTGAATAGGCATA 59.458 34.615 4.40 0.00 0.00 3.14
39 40 7.229306 ACGAACATTGACATTGAATAGGCATAT 59.771 33.333 4.40 0.00 0.00 1.78
40 41 8.720562 CGAACATTGACATTGAATAGGCATATA 58.279 33.333 4.40 0.00 0.00 0.86
45 46 9.910267 ATTGACATTGAATAGGCATATATAGCA 57.090 29.630 0.00 0.00 0.00 3.49
46 47 9.737844 TTGACATTGAATAGGCATATATAGCAA 57.262 29.630 0.00 0.00 0.00 3.91
47 48 9.910267 TGACATTGAATAGGCATATATAGCAAT 57.090 29.630 0.00 0.00 0.00 3.56
49 50 9.910267 ACATTGAATAGGCATATATAGCAATCA 57.090 29.630 0.00 0.00 0.00 2.57
53 54 9.346005 TGAATAGGCATATATAGCAATCAATGG 57.654 33.333 0.00 0.00 0.00 3.16
54 55 7.756395 ATAGGCATATATAGCAATCAATGGC 57.244 36.000 0.00 6.77 39.43 4.40
55 56 5.763355 AGGCATATATAGCAATCAATGGCT 58.237 37.500 10.34 10.34 43.06 4.75
56 57 5.826737 AGGCATATATAGCAATCAATGGCTC 59.173 40.000 10.34 0.00 44.08 4.70
57 58 5.591472 GGCATATATAGCAATCAATGGCTCA 59.409 40.000 0.00 0.00 41.41 4.26
58 59 6.095860 GGCATATATAGCAATCAATGGCTCAA 59.904 38.462 0.00 0.00 41.41 3.02
59 60 6.971184 GCATATATAGCAATCAATGGCTCAAC 59.029 38.462 0.00 0.00 41.41 3.18
60 61 7.148120 GCATATATAGCAATCAATGGCTCAACT 60.148 37.037 0.00 0.00 41.41 3.16
61 62 6.814506 ATATAGCAATCAATGGCTCAACTC 57.185 37.500 0.00 0.00 41.41 3.01
62 63 2.799017 AGCAATCAATGGCTCAACTCA 58.201 42.857 0.00 0.00 34.76 3.41
63 64 3.159472 AGCAATCAATGGCTCAACTCAA 58.841 40.909 0.00 0.00 34.76 3.02
64 65 3.575256 AGCAATCAATGGCTCAACTCAAA 59.425 39.130 0.00 0.00 34.76 2.69
65 66 4.222145 AGCAATCAATGGCTCAACTCAAAT 59.778 37.500 0.00 0.00 34.76 2.32
66 67 5.419788 AGCAATCAATGGCTCAACTCAAATA 59.580 36.000 0.00 0.00 34.76 1.40
67 68 6.097839 AGCAATCAATGGCTCAACTCAAATAT 59.902 34.615 0.00 0.00 34.76 1.28
68 69 6.200286 GCAATCAATGGCTCAACTCAAATATG 59.800 38.462 0.00 0.00 0.00 1.78
69 70 7.485810 CAATCAATGGCTCAACTCAAATATGA 58.514 34.615 0.00 0.00 0.00 2.15
70 71 6.441093 TCAATGGCTCAACTCAAATATGAC 57.559 37.500 0.00 0.00 0.00 3.06
71 72 5.357878 TCAATGGCTCAACTCAAATATGACC 59.642 40.000 0.00 0.00 0.00 4.02
72 73 4.574674 TGGCTCAACTCAAATATGACCT 57.425 40.909 0.00 0.00 0.00 3.85
73 74 4.264253 TGGCTCAACTCAAATATGACCTG 58.736 43.478 0.00 0.00 0.00 4.00
74 75 4.019411 TGGCTCAACTCAAATATGACCTGA 60.019 41.667 0.00 0.00 0.00 3.86
75 76 4.333926 GGCTCAACTCAAATATGACCTGAC 59.666 45.833 0.00 0.00 0.00 3.51
76 77 4.333926 GCTCAACTCAAATATGACCTGACC 59.666 45.833 0.00 0.00 0.00 4.02
77 78 5.738909 CTCAACTCAAATATGACCTGACCT 58.261 41.667 0.00 0.00 0.00 3.85
78 79 5.491070 TCAACTCAAATATGACCTGACCTG 58.509 41.667 0.00 0.00 0.00 4.00
79 80 5.013079 TCAACTCAAATATGACCTGACCTGT 59.987 40.000 0.00 0.00 0.00 4.00
80 81 4.836825 ACTCAAATATGACCTGACCTGTG 58.163 43.478 0.00 0.00 0.00 3.66
81 82 4.532126 ACTCAAATATGACCTGACCTGTGA 59.468 41.667 0.00 0.00 0.00 3.58
82 83 5.013079 ACTCAAATATGACCTGACCTGTGAA 59.987 40.000 0.00 0.00 0.00 3.18
83 84 5.245531 TCAAATATGACCTGACCTGTGAAC 58.754 41.667 0.00 0.00 0.00 3.18
84 85 4.908601 AATATGACCTGACCTGTGAACA 57.091 40.909 0.00 0.00 0.00 3.18
85 86 5.441718 AATATGACCTGACCTGTGAACAT 57.558 39.130 0.00 0.00 0.00 2.71
86 87 2.549064 TGACCTGACCTGTGAACATG 57.451 50.000 0.00 0.00 0.00 3.21
87 88 1.768275 TGACCTGACCTGTGAACATGT 59.232 47.619 0.00 0.00 0.00 3.21
88 89 2.146342 GACCTGACCTGTGAACATGTG 58.854 52.381 0.00 0.00 0.00 3.21
89 90 1.202806 ACCTGACCTGTGAACATGTGG 60.203 52.381 0.00 0.00 0.00 4.17
90 91 1.202806 CCTGACCTGTGAACATGTGGT 60.203 52.381 0.00 0.87 0.00 4.16
91 92 2.575532 CTGACCTGTGAACATGTGGTT 58.424 47.619 0.00 0.00 44.10 3.67
92 93 2.291465 CTGACCTGTGAACATGTGGTTG 59.709 50.000 0.00 0.00 40.63 3.77
93 94 1.608590 GACCTGTGAACATGTGGTTGG 59.391 52.381 0.00 1.28 40.63 3.77
94 95 1.214175 ACCTGTGAACATGTGGTTGGA 59.786 47.619 0.00 0.00 40.63 3.53
95 96 2.158475 ACCTGTGAACATGTGGTTGGAT 60.158 45.455 0.00 0.00 40.63 3.41
96 97 2.229543 CCTGTGAACATGTGGTTGGATG 59.770 50.000 0.00 0.00 40.63 3.51
97 98 2.229543 CTGTGAACATGTGGTTGGATGG 59.770 50.000 0.00 0.00 40.63 3.51
98 99 2.238521 GTGAACATGTGGTTGGATGGT 58.761 47.619 0.00 0.00 40.63 3.55
99 100 2.627699 GTGAACATGTGGTTGGATGGTT 59.372 45.455 0.00 0.00 40.63 3.67
100 101 3.823873 GTGAACATGTGGTTGGATGGTTA 59.176 43.478 0.00 0.00 40.63 2.85
101 102 4.078537 TGAACATGTGGTTGGATGGTTAG 58.921 43.478 0.00 0.00 40.63 2.34
102 103 4.202514 TGAACATGTGGTTGGATGGTTAGA 60.203 41.667 0.00 0.00 40.63 2.10
103 104 3.955471 ACATGTGGTTGGATGGTTAGAG 58.045 45.455 0.00 0.00 0.00 2.43
104 105 3.282021 CATGTGGTTGGATGGTTAGAGG 58.718 50.000 0.00 0.00 0.00 3.69
105 106 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
106 107 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
107 108 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
109 110 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
110 111 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
111 112 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
112 113 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
113 114 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
114 115 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
115 116 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
116 117 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
117 118 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
122 123 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
123 124 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
124 125 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
125 126 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
126 127 2.270874 CTGTGGTATCCCCAGCCCAC 62.271 65.000 0.00 0.00 46.45 4.61
127 128 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
128 129 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
129 130 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
130 131 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
141 142 3.633361 CCACCAGGGTTCAAGTCTC 57.367 57.895 0.00 0.00 0.00 3.36
142 143 0.320771 CCACCAGGGTTCAAGTCTCG 60.321 60.000 0.00 0.00 0.00 4.04
143 144 0.320771 CACCAGGGTTCAAGTCTCGG 60.321 60.000 0.00 0.00 0.00 4.63
144 145 0.763223 ACCAGGGTTCAAGTCTCGGT 60.763 55.000 0.00 0.00 0.00 4.69
145 146 0.320771 CCAGGGTTCAAGTCTCGGTG 60.321 60.000 0.00 0.00 0.00 4.94
146 147 0.951040 CAGGGTTCAAGTCTCGGTGC 60.951 60.000 0.00 0.00 0.00 5.01
147 148 1.122019 AGGGTTCAAGTCTCGGTGCT 61.122 55.000 0.00 0.00 0.00 4.40
148 149 0.670854 GGGTTCAAGTCTCGGTGCTC 60.671 60.000 0.00 0.00 0.00 4.26
149 150 1.009389 GGTTCAAGTCTCGGTGCTCG 61.009 60.000 0.00 0.00 40.90 5.03
150 151 1.372997 TTCAAGTCTCGGTGCTCGC 60.373 57.895 0.00 0.00 39.05 5.03
151 152 2.049156 CAAGTCTCGGTGCTCGCA 60.049 61.111 0.00 0.00 39.05 5.10
152 153 1.446792 CAAGTCTCGGTGCTCGCAT 60.447 57.895 0.00 0.00 39.05 4.73
153 154 1.016130 CAAGTCTCGGTGCTCGCATT 61.016 55.000 0.00 0.00 39.05 3.56
154 155 0.320771 AAGTCTCGGTGCTCGCATTT 60.321 50.000 0.00 0.00 39.05 2.32
155 156 0.530744 AGTCTCGGTGCTCGCATTTA 59.469 50.000 0.00 0.00 39.05 1.40
156 157 1.137086 AGTCTCGGTGCTCGCATTTAT 59.863 47.619 0.00 0.00 39.05 1.40
157 158 1.933853 GTCTCGGTGCTCGCATTTATT 59.066 47.619 0.00 0.00 39.05 1.40
158 159 2.351726 GTCTCGGTGCTCGCATTTATTT 59.648 45.455 0.00 0.00 39.05 1.40
159 160 2.607635 TCTCGGTGCTCGCATTTATTTC 59.392 45.455 0.00 0.00 39.05 2.17
160 161 2.351418 CTCGGTGCTCGCATTTATTTCA 59.649 45.455 0.00 0.00 39.05 2.69
161 162 2.351418 TCGGTGCTCGCATTTATTTCAG 59.649 45.455 0.00 0.00 39.05 3.02
162 163 2.539547 CGGTGCTCGCATTTATTTCAGG 60.540 50.000 0.00 0.00 0.00 3.86
163 164 2.682856 GGTGCTCGCATTTATTTCAGGA 59.317 45.455 0.00 0.00 0.00 3.86
164 165 3.316308 GGTGCTCGCATTTATTTCAGGAT 59.684 43.478 0.00 0.00 0.00 3.24
165 166 4.202050 GGTGCTCGCATTTATTTCAGGATT 60.202 41.667 0.00 0.00 0.00 3.01
166 167 5.343249 GTGCTCGCATTTATTTCAGGATTT 58.657 37.500 0.00 0.00 0.00 2.17
167 168 5.456822 GTGCTCGCATTTATTTCAGGATTTC 59.543 40.000 0.00 0.00 0.00 2.17
168 169 4.978580 GCTCGCATTTATTTCAGGATTTCC 59.021 41.667 0.00 0.00 0.00 3.13
169 170 5.168526 TCGCATTTATTTCAGGATTTCCG 57.831 39.130 0.00 0.00 42.08 4.30
170 171 4.036262 TCGCATTTATTTCAGGATTTCCGG 59.964 41.667 0.00 0.00 42.08 5.14
171 172 4.202010 CGCATTTATTTCAGGATTTCCGGT 60.202 41.667 0.00 0.00 42.08 5.28
172 173 5.043248 GCATTTATTTCAGGATTTCCGGTG 58.957 41.667 0.00 0.00 42.08 4.94
173 174 5.163561 GCATTTATTTCAGGATTTCCGGTGA 60.164 40.000 0.00 0.00 42.08 4.02
174 175 6.461509 GCATTTATTTCAGGATTTCCGGTGAT 60.462 38.462 0.00 0.00 42.08 3.06
175 176 6.449635 TTTATTTCAGGATTTCCGGTGATG 57.550 37.500 0.00 0.00 42.08 3.07
176 177 1.750193 TTCAGGATTTCCGGTGATGC 58.250 50.000 0.00 2.01 42.08 3.91
177 178 0.617935 TCAGGATTTCCGGTGATGCA 59.382 50.000 0.00 0.00 42.08 3.96
178 179 0.734889 CAGGATTTCCGGTGATGCAC 59.265 55.000 0.00 0.00 42.08 4.57
179 180 0.327924 AGGATTTCCGGTGATGCACA 59.672 50.000 0.00 0.00 42.08 4.57
180 181 1.064463 AGGATTTCCGGTGATGCACAT 60.064 47.619 0.00 0.00 42.08 3.21
181 182 1.750778 GGATTTCCGGTGATGCACATT 59.249 47.619 0.00 0.00 35.86 2.71
182 183 2.223572 GGATTTCCGGTGATGCACATTC 60.224 50.000 0.00 0.00 35.86 2.67
183 184 1.902938 TTTCCGGTGATGCACATTCA 58.097 45.000 0.00 0.00 35.86 2.57
184 185 1.452110 TTCCGGTGATGCACATTCAG 58.548 50.000 0.00 0.00 35.86 3.02
185 186 0.324614 TCCGGTGATGCACATTCAGT 59.675 50.000 0.00 0.00 35.86 3.41
195 196 2.393271 CACATTCAGTGGGAGGAGAC 57.607 55.000 0.00 0.00 44.69 3.36
196 197 0.898320 ACATTCAGTGGGAGGAGACG 59.102 55.000 0.00 0.00 0.00 4.18
197 198 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
198 199 1.134965 CATTCAGTGGGAGGAGACGTC 60.135 57.143 7.70 7.70 0.00 4.34
199 200 0.112606 TTCAGTGGGAGGAGACGTCT 59.887 55.000 20.18 20.18 0.00 4.18
200 201 0.322636 TCAGTGGGAGGAGACGTCTC 60.323 60.000 32.96 32.96 42.14 3.36
201 202 1.377463 AGTGGGAGGAGACGTCTCG 60.377 63.158 33.07 0.00 43.76 4.04
202 203 1.674980 GTGGGAGGAGACGTCTCGT 60.675 63.158 34.08 34.08 43.76 4.18
214 215 4.873789 GACGTCTCGTCGTAAATTTCAA 57.126 40.909 8.70 0.00 46.56 2.69
215 216 5.241378 GACGTCTCGTCGTAAATTTCAAA 57.759 39.130 8.70 0.00 46.56 2.69
216 217 5.640218 ACGTCTCGTCGTAAATTTCAAAA 57.360 34.783 0.00 0.00 42.35 2.44
217 218 6.219302 ACGTCTCGTCGTAAATTTCAAAAT 57.781 33.333 0.00 0.00 42.35 1.82
218 219 6.068931 ACGTCTCGTCGTAAATTTCAAAATG 58.931 36.000 0.00 0.00 42.35 2.32
219 220 6.074195 ACGTCTCGTCGTAAATTTCAAAATGA 60.074 34.615 0.00 0.00 42.35 2.57
220 221 6.953743 CGTCTCGTCGTAAATTTCAAAATGAT 59.046 34.615 0.00 0.00 0.00 2.45
221 222 8.105742 CGTCTCGTCGTAAATTTCAAAATGATA 58.894 33.333 0.00 0.00 0.00 2.15
222 223 9.916397 GTCTCGTCGTAAATTTCAAAATGATAT 57.084 29.630 0.00 0.00 0.00 1.63
223 224 9.914923 TCTCGTCGTAAATTTCAAAATGATATG 57.085 29.630 0.00 0.00 0.00 1.78
224 225 8.541733 TCGTCGTAAATTTCAAAATGATATGC 57.458 30.769 0.00 0.00 0.00 3.14
225 226 7.642194 TCGTCGTAAATTTCAAAATGATATGCC 59.358 33.333 0.00 0.00 0.00 4.40
226 227 7.356396 CGTCGTAAATTTCAAAATGATATGCCG 60.356 37.037 0.00 0.00 0.00 5.69
227 228 6.915300 TCGTAAATTTCAAAATGATATGCCGG 59.085 34.615 0.00 0.00 0.00 6.13
228 229 5.989551 AAATTTCAAAATGATATGCCGGC 57.010 34.783 22.73 22.73 0.00 6.13
229 230 4.942761 ATTTCAAAATGATATGCCGGCT 57.057 36.364 29.70 15.76 0.00 5.52
230 231 3.988379 TTCAAAATGATATGCCGGCTC 57.012 42.857 29.70 17.89 0.00 4.70
231 232 2.929641 TCAAAATGATATGCCGGCTCA 58.070 42.857 29.70 23.34 0.00 4.26
232 233 2.880268 TCAAAATGATATGCCGGCTCAG 59.120 45.455 29.70 11.05 0.00 3.35
233 234 2.620115 CAAAATGATATGCCGGCTCAGT 59.380 45.455 29.70 19.53 0.00 3.41
234 235 2.175878 AATGATATGCCGGCTCAGTC 57.824 50.000 29.70 19.55 0.00 3.51
235 236 1.346062 ATGATATGCCGGCTCAGTCT 58.654 50.000 29.70 5.43 0.00 3.24
236 237 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
237 238 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
238 239 2.698274 TGATATGCCGGCTCAGTCTTTA 59.302 45.455 29.70 3.35 0.00 1.85
239 240 2.890808 TATGCCGGCTCAGTCTTTAG 57.109 50.000 29.70 0.00 0.00 1.85
240 241 1.195115 ATGCCGGCTCAGTCTTTAGA 58.805 50.000 29.70 1.81 0.00 2.10
241 242 0.973632 TGCCGGCTCAGTCTTTAGAA 59.026 50.000 29.70 0.00 0.00 2.10
242 243 1.066858 TGCCGGCTCAGTCTTTAGAAG 60.067 52.381 29.70 0.00 0.00 2.85
243 244 1.740718 GCCGGCTCAGTCTTTAGAAGG 60.741 57.143 22.15 0.00 0.00 3.46
244 245 1.550976 CCGGCTCAGTCTTTAGAAGGT 59.449 52.381 0.00 0.00 0.00 3.50
245 246 2.611518 CGGCTCAGTCTTTAGAAGGTG 58.388 52.381 0.00 0.00 0.00 4.00
246 247 2.351455 GGCTCAGTCTTTAGAAGGTGC 58.649 52.381 0.00 0.00 0.00 5.01
247 248 2.027653 GGCTCAGTCTTTAGAAGGTGCT 60.028 50.000 0.00 0.00 0.00 4.40
248 249 3.258228 GCTCAGTCTTTAGAAGGTGCTC 58.742 50.000 0.00 0.00 0.00 4.26
249 250 3.306364 GCTCAGTCTTTAGAAGGTGCTCA 60.306 47.826 0.00 0.00 0.00 4.26
250 251 4.622695 GCTCAGTCTTTAGAAGGTGCTCAT 60.623 45.833 0.00 0.00 0.00 2.90
251 252 5.394663 GCTCAGTCTTTAGAAGGTGCTCATA 60.395 44.000 0.00 0.00 0.00 2.15
252 253 6.214191 TCAGTCTTTAGAAGGTGCTCATAG 57.786 41.667 0.00 0.00 0.00 2.23
253 254 5.127845 TCAGTCTTTAGAAGGTGCTCATAGG 59.872 44.000 0.00 0.00 0.00 2.57
254 255 4.407296 AGTCTTTAGAAGGTGCTCATAGGG 59.593 45.833 0.00 0.00 0.00 3.53
255 256 3.711704 TCTTTAGAAGGTGCTCATAGGGG 59.288 47.826 0.00 0.00 0.00 4.79
256 257 2.868964 TAGAAGGTGCTCATAGGGGT 57.131 50.000 0.00 0.00 0.00 4.95
257 258 2.868964 AGAAGGTGCTCATAGGGGTA 57.131 50.000 0.00 0.00 0.00 3.69
258 259 2.683768 AGAAGGTGCTCATAGGGGTAG 58.316 52.381 0.00 0.00 0.00 3.18
259 260 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
260 261 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
261 262 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
262 263 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
263 264 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
264 265 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
265 266 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
266 267 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
267 268 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
268 269 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
269 270 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
270 271 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
271 272 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
272 273 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
273 274 1.227438 GTAGGGTGTGCGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
274 275 0.812412 GTAGGGTGTGCGTGTGTGTT 60.812 55.000 0.00 0.00 0.00 3.32
275 276 0.531090 TAGGGTGTGCGTGTGTGTTC 60.531 55.000 0.00 0.00 0.00 3.18
276 277 2.109739 GGGTGTGCGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
277 278 1.444119 GGGTGTGCGTGTGTGTTCAT 61.444 55.000 0.00 0.00 0.00 2.57
278 279 1.222300 GGTGTGCGTGTGTGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
279 280 1.194547 GGTGTGCGTGTGTGTTCATAG 59.805 52.381 0.00 0.00 0.00 2.23
280 281 1.194547 GTGTGCGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
281 282 0.796312 GTGCGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
282 283 0.321210 TGCGTGTGTGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
283 284 0.321298 GCGTGTGTGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
284 285 1.438651 CGTGTGTGTTCATAGGGGTG 58.561 55.000 0.00 0.00 0.00 4.61
285 286 1.001520 CGTGTGTGTTCATAGGGGTGA 59.998 52.381 0.00 0.00 0.00 4.02
286 287 2.699954 GTGTGTGTTCATAGGGGTGAG 58.300 52.381 0.00 0.00 0.00 3.51
287 288 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
288 289 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
289 290 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
290 291 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
291 292 4.081087 GTGTGTTCATAGGGGTGAGTGTAT 60.081 45.833 0.00 0.00 0.00 2.29
292 293 4.081142 TGTGTTCATAGGGGTGAGTGTATG 60.081 45.833 0.00 0.00 0.00 2.39
293 294 3.118408 TGTTCATAGGGGTGAGTGTATGC 60.118 47.826 0.00 0.00 0.00 3.14
294 295 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
295 296 1.412710 CATAGGGGTGAGTGTATGCGT 59.587 52.381 0.00 0.00 0.00 5.24
296 297 0.821517 TAGGGGTGAGTGTATGCGTG 59.178 55.000 0.00 0.00 0.00 5.34
297 298 1.192146 AGGGGTGAGTGTATGCGTGT 61.192 55.000 0.00 0.00 0.00 4.49
298 299 1.019278 GGGGTGAGTGTATGCGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
299 300 0.320421 GGGTGAGTGTATGCGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
300 301 1.067425 GGGTGAGTGTATGCGTGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
301 302 2.418197 GGGTGAGTGTATGCGTGTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
302 303 3.181484 GGGTGAGTGTATGCGTGTGTATA 60.181 47.826 0.00 0.00 0.00 1.47
303 304 4.500887 GGGTGAGTGTATGCGTGTGTATAT 60.501 45.833 0.00 0.00 0.00 0.86
304 305 4.444388 GGTGAGTGTATGCGTGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
305 306 5.278604 GTGAGTGTATGCGTGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
306 307 5.399596 GTGAGTGTATGCGTGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
307 308 4.299155 AGTGTATGCGTGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
308 309 4.038042 AGTGTATGCGTGTGTATATGAGCT 59.962 41.667 0.00 0.00 0.00 4.09
309 310 4.383052 GTGTATGCGTGTGTATATGAGCTC 59.617 45.833 6.82 6.82 0.00 4.09
310 311 4.278419 TGTATGCGTGTGTATATGAGCTCT 59.722 41.667 16.19 3.04 0.00 4.09
311 312 3.801114 TGCGTGTGTATATGAGCTCTT 57.199 42.857 16.19 11.54 0.00 2.85
312 313 3.447742 TGCGTGTGTATATGAGCTCTTG 58.552 45.455 16.19 0.00 0.00 3.02
313 314 2.219674 GCGTGTGTATATGAGCTCTTGC 59.780 50.000 16.19 4.30 40.05 4.01
314 315 2.469147 CGTGTGTATATGAGCTCTTGCG 59.531 50.000 16.19 3.18 45.42 4.85
315 316 3.448686 GTGTGTATATGAGCTCTTGCGT 58.551 45.455 16.19 2.64 45.42 5.24
316 317 3.487574 GTGTGTATATGAGCTCTTGCGTC 59.512 47.826 16.19 2.20 45.42 5.19
317 318 3.381590 TGTGTATATGAGCTCTTGCGTCT 59.618 43.478 16.19 0.00 45.42 4.18
318 319 3.733224 GTGTATATGAGCTCTTGCGTCTG 59.267 47.826 16.19 0.00 45.42 3.51
319 320 3.381590 TGTATATGAGCTCTTGCGTCTGT 59.618 43.478 16.19 0.00 45.42 3.41
320 321 4.578928 TGTATATGAGCTCTTGCGTCTGTA 59.421 41.667 16.19 0.00 45.42 2.74
321 322 2.285827 ATGAGCTCTTGCGTCTGTAC 57.714 50.000 16.19 0.00 45.42 2.90
322 323 1.248486 TGAGCTCTTGCGTCTGTACT 58.752 50.000 16.19 0.00 45.42 2.73
323 324 1.068264 TGAGCTCTTGCGTCTGTACTG 60.068 52.381 16.19 0.00 45.42 2.74
324 325 0.962489 AGCTCTTGCGTCTGTACTGT 59.038 50.000 0.00 0.00 45.42 3.55
325 326 1.063806 GCTCTTGCGTCTGTACTGTG 58.936 55.000 0.00 0.00 0.00 3.66
326 327 1.603172 GCTCTTGCGTCTGTACTGTGT 60.603 52.381 0.00 0.00 0.00 3.72
327 328 2.743938 CTCTTGCGTCTGTACTGTGTT 58.256 47.619 0.00 0.00 0.00 3.32
328 329 3.855895 GCTCTTGCGTCTGTACTGTGTTA 60.856 47.826 0.00 0.00 0.00 2.41
329 330 4.295870 CTCTTGCGTCTGTACTGTGTTAA 58.704 43.478 0.00 0.00 0.00 2.01
330 331 4.684877 TCTTGCGTCTGTACTGTGTTAAA 58.315 39.130 0.00 0.00 0.00 1.52
331 332 5.110598 TCTTGCGTCTGTACTGTGTTAAAA 58.889 37.500 0.00 0.00 0.00 1.52
332 333 5.581479 TCTTGCGTCTGTACTGTGTTAAAAA 59.419 36.000 0.00 0.00 0.00 1.94
444 459 2.124151 GGAGGTTGGGCATGCGAT 60.124 61.111 12.44 0.00 0.00 4.58
479 494 0.741221 CACGCTTCCTACTGCTTCCC 60.741 60.000 0.00 0.00 0.00 3.97
484 499 2.750166 GCTTCCTACTGCTTCCCTTTTC 59.250 50.000 0.00 0.00 0.00 2.29
497 512 1.022451 CCTTTTCGGCCGGAAATCGA 61.022 55.000 31.11 10.23 43.82 3.59
498 513 1.014352 CTTTTCGGCCGGAAATCGAT 58.986 50.000 31.11 0.00 43.82 3.59
561 581 2.359975 GCCACACCCTTCCTTCCG 60.360 66.667 0.00 0.00 0.00 4.30
655 695 3.533691 GCACTCGCACTCGTACGC 61.534 66.667 11.24 0.00 38.36 4.42
686 727 1.943693 CACCGCGCCAACAAAACAG 60.944 57.895 0.00 0.00 0.00 3.16
687 728 2.115911 ACCGCGCCAACAAAACAGA 61.116 52.632 0.00 0.00 0.00 3.41
690 731 1.539776 CGCGCCAACAAAACAGAAGC 61.540 55.000 0.00 0.00 0.00 3.86
762 804 0.919710 GCTAAATCTGGGGTGGAGGT 59.080 55.000 0.00 0.00 0.00 3.85
763 805 2.124411 GCTAAATCTGGGGTGGAGGTA 58.876 52.381 0.00 0.00 0.00 3.08
764 806 2.711547 GCTAAATCTGGGGTGGAGGTAT 59.288 50.000 0.00 0.00 0.00 2.73
765 807 3.138468 GCTAAATCTGGGGTGGAGGTATT 59.862 47.826 0.00 0.00 0.00 1.89
766 808 4.386424 GCTAAATCTGGGGTGGAGGTATTT 60.386 45.833 0.00 0.00 0.00 1.40
767 809 3.669939 AATCTGGGGTGGAGGTATTTG 57.330 47.619 0.00 0.00 0.00 2.32
768 810 2.352561 TCTGGGGTGGAGGTATTTGA 57.647 50.000 0.00 0.00 0.00 2.69
769 811 2.638325 TCTGGGGTGGAGGTATTTGAA 58.362 47.619 0.00 0.00 0.00 2.69
770 812 2.990284 TCTGGGGTGGAGGTATTTGAAA 59.010 45.455 0.00 0.00 0.00 2.69
771 813 3.399644 TCTGGGGTGGAGGTATTTGAAAA 59.600 43.478 0.00 0.00 0.00 2.29
772 814 4.140900 TCTGGGGTGGAGGTATTTGAAAAA 60.141 41.667 0.00 0.00 0.00 1.94
883 927 0.036388 AGCGATACAACCCACCACAG 60.036 55.000 0.00 0.00 0.00 3.66
1303 1352 6.405538 TCAATCCAATTGTTTTCCTTATGCC 58.594 36.000 4.43 0.00 41.02 4.40
1320 1373 3.143807 TGCCAATTTTATACTGTGCGC 57.856 42.857 0.00 0.00 0.00 6.09
1350 1403 2.695147 GGAACAGCCAATTAATCCCCTG 59.305 50.000 7.33 7.33 36.34 4.45
1359 1412 6.220400 AGCCAATTAATCCCCTGGACATATAT 59.780 38.462 7.90 0.00 32.98 0.86
1360 1413 7.408805 AGCCAATTAATCCCCTGGACATATATA 59.591 37.037 7.90 0.00 32.98 0.86
1406 1467 7.504924 TCTAGTTTGAAAATTGGAACGATGT 57.495 32.000 0.00 0.00 0.00 3.06
1407 1468 8.610248 TCTAGTTTGAAAATTGGAACGATGTA 57.390 30.769 0.00 0.00 0.00 2.29
1408 1469 9.226606 TCTAGTTTGAAAATTGGAACGATGTAT 57.773 29.630 0.00 0.00 0.00 2.29
1409 1470 9.277565 CTAGTTTGAAAATTGGAACGATGTATG 57.722 33.333 0.00 0.00 0.00 2.39
1410 1471 7.657336 AGTTTGAAAATTGGAACGATGTATGT 58.343 30.769 0.00 0.00 0.00 2.29
1411 1472 8.788806 AGTTTGAAAATTGGAACGATGTATGTA 58.211 29.630 0.00 0.00 0.00 2.29
1412 1473 9.567848 GTTTGAAAATTGGAACGATGTATGTAT 57.432 29.630 0.00 0.00 0.00 2.29
1413 1474 9.781834 TTTGAAAATTGGAACGATGTATGTATC 57.218 29.630 0.00 0.00 0.00 2.24
1446 1507 5.751243 TTTACCTGCAGTTTTGTTCTCTC 57.249 39.130 13.81 0.00 0.00 3.20
1450 1511 4.336713 ACCTGCAGTTTTGTTCTCTCTTTC 59.663 41.667 13.81 0.00 0.00 2.62
1452 1513 5.490139 TGCAGTTTTGTTCTCTCTTTCTG 57.510 39.130 0.00 0.00 0.00 3.02
1454 1515 5.163723 TGCAGTTTTGTTCTCTCTTTCTGTG 60.164 40.000 0.00 0.00 0.00 3.66
1457 1518 6.744537 CAGTTTTGTTCTCTCTTTCTGTGTTG 59.255 38.462 0.00 0.00 0.00 3.33
1542 1603 1.203038 TGGCATGAAAAGGGAAGCTGA 60.203 47.619 0.00 0.00 0.00 4.26
1565 1627 9.617975 CTGATTTACTCTTGAAAACAAGGATTC 57.382 33.333 9.54 0.00 33.26 2.52
1567 1629 9.833182 GATTTACTCTTGAAAACAAGGATTCTC 57.167 33.333 9.54 0.00 33.26 2.87
1576 1638 6.547141 TGAAAACAAGGATTCTCTGTCATGTT 59.453 34.615 0.00 0.00 32.24 2.71
1577 1639 7.719193 TGAAAACAAGGATTCTCTGTCATGTTA 59.281 33.333 0.00 0.00 31.34 2.41
1579 1641 8.641498 AAACAAGGATTCTCTGTCATGTTAAT 57.359 30.769 0.00 0.00 31.34 1.40
1643 1706 3.669023 GCTTGAAATTGCTCAGTTCCTCG 60.669 47.826 0.00 0.00 0.00 4.63
1666 1729 5.508224 CGTGTTCAGACTTGAAGTTTCAAAC 59.492 40.000 0.00 1.94 45.61 2.93
1733 1813 6.346359 GCACTCTGAATTTTGAAGCATTTGTC 60.346 38.462 0.00 0.00 0.00 3.18
1736 1816 6.964908 TCTGAATTTTGAAGCATTTGTCGTA 58.035 32.000 0.00 0.00 0.00 3.43
1976 2056 7.083858 CCATTATGTAACACTGAGTTTGGTTG 58.916 38.462 0.00 0.00 41.64 3.77
1995 2075 2.325484 TGACCACTAACCTCTTCTGCA 58.675 47.619 0.00 0.00 0.00 4.41
2053 2133 8.033626 ACTAGGAAATTAGGACTACAAACTTCG 58.966 37.037 0.00 0.00 0.00 3.79
2138 2219 1.225704 GGGCTCAATCCTGTCAGGG 59.774 63.158 19.11 3.14 35.59 4.45
2157 2239 1.274167 GGGTGAACATGGTACTCACGA 59.726 52.381 0.00 0.00 40.32 4.35
2456 2542 3.830192 CTTGCGGCATGCCTTCCC 61.830 66.667 33.07 18.67 45.60 3.97
2534 2620 4.141733 TGGAATTCTATCGATGTGCTTCCA 60.142 41.667 20.95 20.95 38.76 3.53
2799 2886 6.819146 AGTTACCTAGTTTCTTCTTGCTATGC 59.181 38.462 0.00 0.00 0.00 3.14
2815 2902 4.163268 TGCTATGCCCACTGTGAGTAATTA 59.837 41.667 9.86 0.00 0.00 1.40
2932 3020 2.366972 ATAGCCGGTCCCAAGCCT 60.367 61.111 1.90 0.00 0.00 4.58
2944 3032 0.991920 CCAAGCCTGGGTAAAGGAGA 59.008 55.000 0.00 0.00 40.02 3.71
3078 3166 3.019564 GTGGAAGCTTGCTATCCATGTT 58.980 45.455 19.34 0.00 44.55 2.71
3104 3192 0.803768 CCATGAGTTGGTCGCGAGAG 60.804 60.000 10.24 0.00 43.49 3.20
3166 3270 4.142249 GGACTAAAGGCTTTGTGTTGTTGT 60.142 41.667 22.32 1.22 0.00 3.32
3167 3271 5.400066 ACTAAAGGCTTTGTGTTGTTGTT 57.600 34.783 22.32 0.00 0.00 2.83
3226 3330 5.887598 TGTAGCATCAAAACCAGCTTATGAT 59.112 36.000 0.00 0.00 38.47 2.45
3278 3497 5.856455 CACCTCAAAGTTTATTTTAGGCGTG 59.144 40.000 1.43 0.00 0.00 5.34
3361 3588 6.698008 TGGTTCAATTCGATATCTTTGCAT 57.302 33.333 0.34 0.00 0.00 3.96
3443 3694 5.414144 GCATTGCAAGGGCCTTTTTATTTAA 59.586 36.000 18.16 4.69 40.13 1.52
3822 4074 7.217028 TCTTTCTACCCTCCAGTATACTACA 57.783 40.000 4.74 0.00 0.00 2.74
3823 4075 7.288560 TCTTTCTACCCTCCAGTATACTACAG 58.711 42.308 4.74 4.30 0.00 2.74
3876 4128 7.092846 ACCTGTACCTCAGCTTCATAACTATTT 60.093 37.037 0.00 0.00 42.38 1.40
4172 4424 2.082231 CAGCTCTTCCATGTCTTGGTG 58.918 52.381 4.76 0.69 46.52 4.17
4418 4679 0.748005 TTGGCTGGCTTAAGGCGATC 60.748 55.000 22.54 14.48 45.39 3.69
4437 4698 5.409520 GCGATCATATTCAGCAACCTTCATA 59.590 40.000 0.00 0.00 0.00 2.15
4518 4782 3.227372 CTGTTCACAGCCGTGCACG 62.227 63.158 31.77 31.77 41.56 5.34
4522 4786 3.268603 CACAGCCGTGCACGTCAA 61.269 61.111 34.81 0.00 36.06 3.18
4549 4820 4.024556 CGAGACAAGTTTGTTGCAGAAGAT 60.025 41.667 0.00 0.00 42.43 2.40
4665 5825 2.666862 CCGCGGCTGTTGTTGGTA 60.667 61.111 14.67 0.00 0.00 3.25
4710 5870 5.686834 CAAAATATCGCTCACATGGATCTG 58.313 41.667 0.00 0.00 0.00 2.90
5057 6217 2.357034 GTTCTTCGGCTCCACGCA 60.357 61.111 0.00 0.00 41.67 5.24
5066 6226 3.023591 GCTCCACGCACGGCTTAAC 62.024 63.158 0.00 0.00 38.92 2.01
5106 6279 0.531200 ACCACTCGATCGTTTCCTCC 59.469 55.000 15.94 0.00 0.00 4.30
5118 6291 0.034896 TTTCCTCCTCGTCCACAAGC 59.965 55.000 0.00 0.00 0.00 4.01
5119 6292 2.125912 CCTCCTCGTCCACAAGCG 60.126 66.667 0.00 0.00 0.00 4.68
5121 6294 1.006102 CTCCTCGTCCACAAGCGTT 60.006 57.895 0.00 0.00 0.00 4.84
5122 6295 0.600255 CTCCTCGTCCACAAGCGTTT 60.600 55.000 0.00 0.00 0.00 3.60
5123 6296 0.878523 TCCTCGTCCACAAGCGTTTG 60.879 55.000 10.72 10.72 40.24 2.93
5124 6297 0.878523 CCTCGTCCACAAGCGTTTGA 60.879 55.000 19.42 0.00 37.73 2.69
5125 6298 1.148310 CTCGTCCACAAGCGTTTGAT 58.852 50.000 19.42 0.14 37.73 2.57
5131 6310 3.496884 GTCCACAAGCGTTTGATTCAGTA 59.503 43.478 19.42 0.00 37.73 2.74
5134 6313 5.088739 CCACAAGCGTTTGATTCAGTATTC 58.911 41.667 19.42 0.00 37.73 1.75
5140 6319 4.437390 GCGTTTGATTCAGTATTCTGGTGG 60.437 45.833 0.00 0.00 41.59 4.61
5142 6321 3.998913 TGATTCAGTATTCTGGTGGCA 57.001 42.857 0.00 0.00 41.59 4.92
5144 6323 4.009675 TGATTCAGTATTCTGGTGGCAAC 58.990 43.478 0.00 0.00 41.59 4.17
5167 6346 1.141053 GACTTGGTGGACTGACAGGTT 59.859 52.381 7.51 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.291858 GTCAATGTTCGTCAGAGCATATTCA 59.708 40.000 0.00 0.00 45.60 2.57
1 2 5.291858 TGTCAATGTTCGTCAGAGCATATTC 59.708 40.000 0.00 0.00 45.60 1.75
2 3 5.178061 TGTCAATGTTCGTCAGAGCATATT 58.822 37.500 0.00 0.00 45.60 1.28
3 4 4.758688 TGTCAATGTTCGTCAGAGCATAT 58.241 39.130 0.00 0.00 45.60 1.78
4 5 4.186856 TGTCAATGTTCGTCAGAGCATA 57.813 40.909 0.00 0.00 45.60 3.14
6 7 2.524569 TGTCAATGTTCGTCAGAGCA 57.475 45.000 0.00 0.00 41.73 4.26
7 8 3.433274 TCAATGTCAATGTTCGTCAGAGC 59.567 43.478 0.00 0.00 0.00 4.09
8 9 5.596268 TTCAATGTCAATGTTCGTCAGAG 57.404 39.130 0.00 0.00 0.00 3.35
9 10 6.313658 CCTATTCAATGTCAATGTTCGTCAGA 59.686 38.462 0.00 0.00 0.00 3.27
10 11 6.481134 CCTATTCAATGTCAATGTTCGTCAG 58.519 40.000 0.00 0.00 0.00 3.51
11 12 5.163764 GCCTATTCAATGTCAATGTTCGTCA 60.164 40.000 0.00 0.00 0.00 4.35
12 13 5.163764 TGCCTATTCAATGTCAATGTTCGTC 60.164 40.000 0.00 0.00 0.00 4.20
13 14 4.699735 TGCCTATTCAATGTCAATGTTCGT 59.300 37.500 0.00 0.00 0.00 3.85
14 15 5.233957 TGCCTATTCAATGTCAATGTTCG 57.766 39.130 0.00 0.00 0.00 3.95
19 20 9.910267 TGCTATATATGCCTATTCAATGTCAAT 57.090 29.630 0.00 0.00 0.00 2.57
20 21 9.737844 TTGCTATATATGCCTATTCAATGTCAA 57.262 29.630 0.00 0.00 0.00 3.18
21 22 9.910267 ATTGCTATATATGCCTATTCAATGTCA 57.090 29.630 0.00 0.00 0.00 3.58
23 24 9.910267 TGATTGCTATATATGCCTATTCAATGT 57.090 29.630 0.00 0.00 0.00 2.71
27 28 9.346005 CCATTGATTGCTATATATGCCTATTCA 57.654 33.333 0.00 0.00 0.00 2.57
28 29 8.295288 GCCATTGATTGCTATATATGCCTATTC 58.705 37.037 0.00 0.00 0.00 1.75
29 30 8.003044 AGCCATTGATTGCTATATATGCCTATT 58.997 33.333 0.00 0.00 35.69 1.73
30 31 7.524290 AGCCATTGATTGCTATATATGCCTAT 58.476 34.615 0.00 0.00 35.69 2.57
31 32 6.903516 AGCCATTGATTGCTATATATGCCTA 58.096 36.000 0.00 0.00 35.69 3.93
32 33 5.763355 AGCCATTGATTGCTATATATGCCT 58.237 37.500 0.00 0.00 35.69 4.75
33 34 5.591472 TGAGCCATTGATTGCTATATATGCC 59.409 40.000 0.00 0.00 38.11 4.40
34 35 6.688637 TGAGCCATTGATTGCTATATATGC 57.311 37.500 0.00 0.00 38.11 3.14
35 36 8.277490 AGTTGAGCCATTGATTGCTATATATG 57.723 34.615 0.00 0.00 38.11 1.78
36 37 8.105197 TGAGTTGAGCCATTGATTGCTATATAT 58.895 33.333 0.00 0.00 38.11 0.86
37 38 7.452562 TGAGTTGAGCCATTGATTGCTATATA 58.547 34.615 0.00 0.00 38.11 0.86
38 39 6.301486 TGAGTTGAGCCATTGATTGCTATAT 58.699 36.000 0.00 0.00 38.11 0.86
39 40 5.683681 TGAGTTGAGCCATTGATTGCTATA 58.316 37.500 0.00 0.00 38.11 1.31
40 41 4.529897 TGAGTTGAGCCATTGATTGCTAT 58.470 39.130 0.00 0.00 38.11 2.97
41 42 3.954200 TGAGTTGAGCCATTGATTGCTA 58.046 40.909 0.00 0.00 38.11 3.49
42 43 2.799017 TGAGTTGAGCCATTGATTGCT 58.201 42.857 0.00 0.00 41.42 3.91
43 44 3.581024 TTGAGTTGAGCCATTGATTGC 57.419 42.857 0.00 0.00 0.00 3.56
44 45 7.434307 GTCATATTTGAGTTGAGCCATTGATTG 59.566 37.037 0.00 0.00 30.85 2.67
45 46 7.417116 GGTCATATTTGAGTTGAGCCATTGATT 60.417 37.037 0.00 0.00 33.02 2.57
46 47 6.040166 GGTCATATTTGAGTTGAGCCATTGAT 59.960 38.462 0.00 0.00 33.02 2.57
47 48 5.357878 GGTCATATTTGAGTTGAGCCATTGA 59.642 40.000 0.00 0.00 33.02 2.57
48 49 5.359009 AGGTCATATTTGAGTTGAGCCATTG 59.641 40.000 0.00 0.00 38.35 2.82
49 50 5.359009 CAGGTCATATTTGAGTTGAGCCATT 59.641 40.000 0.00 0.00 38.35 3.16
50 51 4.885907 CAGGTCATATTTGAGTTGAGCCAT 59.114 41.667 0.00 0.00 38.35 4.40
51 52 4.019411 TCAGGTCATATTTGAGTTGAGCCA 60.019 41.667 0.00 0.00 38.35 4.75
52 53 4.333926 GTCAGGTCATATTTGAGTTGAGCC 59.666 45.833 0.00 0.00 38.35 4.70
53 54 4.333926 GGTCAGGTCATATTTGAGTTGAGC 59.666 45.833 10.84 10.84 37.05 4.26
54 55 5.583854 CAGGTCAGGTCATATTTGAGTTGAG 59.416 44.000 1.41 0.00 30.33 3.02
55 56 5.013079 ACAGGTCAGGTCATATTTGAGTTGA 59.987 40.000 0.00 0.00 30.85 3.18
56 57 5.122869 CACAGGTCAGGTCATATTTGAGTTG 59.877 44.000 0.00 0.00 30.85 3.16
57 58 5.013079 TCACAGGTCAGGTCATATTTGAGTT 59.987 40.000 0.00 0.00 30.85 3.01
58 59 4.532126 TCACAGGTCAGGTCATATTTGAGT 59.468 41.667 0.00 0.00 30.85 3.41
59 60 5.089970 TCACAGGTCAGGTCATATTTGAG 57.910 43.478 0.00 0.00 30.85 3.02
60 61 5.221823 TGTTCACAGGTCAGGTCATATTTGA 60.222 40.000 0.00 0.00 0.00 2.69
61 62 5.003160 TGTTCACAGGTCAGGTCATATTTG 58.997 41.667 0.00 0.00 0.00 2.32
62 63 5.241403 TGTTCACAGGTCAGGTCATATTT 57.759 39.130 0.00 0.00 0.00 1.40
63 64 4.908601 TGTTCACAGGTCAGGTCATATT 57.091 40.909 0.00 0.00 0.00 1.28
64 65 4.225942 ACATGTTCACAGGTCAGGTCATAT 59.774 41.667 0.00 0.00 35.87 1.78
65 66 3.582647 ACATGTTCACAGGTCAGGTCATA 59.417 43.478 0.00 0.00 35.87 2.15
66 67 2.373169 ACATGTTCACAGGTCAGGTCAT 59.627 45.455 0.00 0.00 35.87 3.06
67 68 1.768275 ACATGTTCACAGGTCAGGTCA 59.232 47.619 0.00 0.00 35.87 4.02
68 69 2.146342 CACATGTTCACAGGTCAGGTC 58.854 52.381 0.00 0.00 39.00 3.85
69 70 1.202806 CCACATGTTCACAGGTCAGGT 60.203 52.381 0.00 0.00 39.00 4.00
70 71 1.202806 ACCACATGTTCACAGGTCAGG 60.203 52.381 0.00 0.00 39.00 3.86
71 72 2.260844 ACCACATGTTCACAGGTCAG 57.739 50.000 0.00 0.00 39.00 3.51
72 73 2.296792 CAACCACATGTTCACAGGTCA 58.703 47.619 5.35 0.00 39.00 4.02
73 74 1.608590 CCAACCACATGTTCACAGGTC 59.391 52.381 5.35 0.00 39.00 3.85
74 75 1.214175 TCCAACCACATGTTCACAGGT 59.786 47.619 0.00 0.00 42.05 4.00
75 76 1.979855 TCCAACCACATGTTCACAGG 58.020 50.000 0.00 0.00 34.00 4.00
76 77 2.229543 CCATCCAACCACATGTTCACAG 59.770 50.000 0.00 0.00 34.00 3.66
77 78 2.237643 CCATCCAACCACATGTTCACA 58.762 47.619 0.00 0.00 34.00 3.58
78 79 2.238521 ACCATCCAACCACATGTTCAC 58.761 47.619 0.00 0.00 34.00 3.18
79 80 2.673775 ACCATCCAACCACATGTTCA 57.326 45.000 0.00 0.00 34.00 3.18
80 81 4.331968 TCTAACCATCCAACCACATGTTC 58.668 43.478 0.00 0.00 34.00 3.18
81 82 4.335416 CTCTAACCATCCAACCACATGTT 58.665 43.478 0.00 0.00 37.80 2.71
82 83 3.308402 CCTCTAACCATCCAACCACATGT 60.308 47.826 0.00 0.00 0.00 3.21
83 84 3.282021 CCTCTAACCATCCAACCACATG 58.718 50.000 0.00 0.00 0.00 3.21
84 85 2.242196 CCCTCTAACCATCCAACCACAT 59.758 50.000 0.00 0.00 0.00 3.21
85 86 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
86 87 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
87 88 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
88 89 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
89 90 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
90 91 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
91 92 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
92 93 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
93 94 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
94 95 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
95 96 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
96 97 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
112 113 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
113 114 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
123 124 0.320771 CGAGACTTGAACCCTGGTGG 60.321 60.000 0.00 0.00 41.37 4.61
124 125 0.320771 CCGAGACTTGAACCCTGGTG 60.321 60.000 0.00 0.00 0.00 4.17
125 126 0.763223 ACCGAGACTTGAACCCTGGT 60.763 55.000 0.00 0.00 0.00 4.00
126 127 0.320771 CACCGAGACTTGAACCCTGG 60.321 60.000 0.00 0.00 0.00 4.45
127 128 0.951040 GCACCGAGACTTGAACCCTG 60.951 60.000 0.00 0.00 0.00 4.45
128 129 1.122019 AGCACCGAGACTTGAACCCT 61.122 55.000 0.00 0.00 0.00 4.34
129 130 0.670854 GAGCACCGAGACTTGAACCC 60.671 60.000 0.00 0.00 0.00 4.11
130 131 1.009389 CGAGCACCGAGACTTGAACC 61.009 60.000 0.00 0.00 41.76 3.62
131 132 1.618640 GCGAGCACCGAGACTTGAAC 61.619 60.000 2.63 0.00 41.76 3.18
132 133 1.372997 GCGAGCACCGAGACTTGAA 60.373 57.895 2.63 0.00 41.76 2.69
133 134 1.877576 ATGCGAGCACCGAGACTTGA 61.878 55.000 0.00 0.00 41.76 3.02
134 135 1.016130 AATGCGAGCACCGAGACTTG 61.016 55.000 0.00 0.00 41.76 3.16
135 136 0.320771 AAATGCGAGCACCGAGACTT 60.321 50.000 0.00 0.00 41.76 3.01
136 137 0.530744 TAAATGCGAGCACCGAGACT 59.469 50.000 0.00 0.00 41.76 3.24
137 138 1.571919 ATAAATGCGAGCACCGAGAC 58.428 50.000 0.00 0.00 41.76 3.36
138 139 2.309528 AATAAATGCGAGCACCGAGA 57.690 45.000 0.00 0.00 41.76 4.04
139 140 2.351418 TGAAATAAATGCGAGCACCGAG 59.649 45.455 0.00 0.00 41.76 4.63
140 141 2.351418 CTGAAATAAATGCGAGCACCGA 59.649 45.455 0.00 0.00 41.76 4.69
141 142 2.539547 CCTGAAATAAATGCGAGCACCG 60.540 50.000 0.00 0.00 42.21 4.94
142 143 2.682856 TCCTGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
143 144 4.558538 ATCCTGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
144 145 5.450412 GGAAATCCTGAAATAAATGCGAGCA 60.450 40.000 0.00 0.00 0.00 4.26
145 146 4.978580 GGAAATCCTGAAATAAATGCGAGC 59.021 41.667 0.00 0.00 0.00 5.03
146 147 5.207768 CGGAAATCCTGAAATAAATGCGAG 58.792 41.667 0.00 0.00 0.00 5.03
147 148 4.036262 CCGGAAATCCTGAAATAAATGCGA 59.964 41.667 0.00 0.00 0.00 5.10
148 149 4.202010 ACCGGAAATCCTGAAATAAATGCG 60.202 41.667 9.46 0.00 0.00 4.73
149 150 5.043248 CACCGGAAATCCTGAAATAAATGC 58.957 41.667 9.46 0.00 0.00 3.56
150 151 6.449635 TCACCGGAAATCCTGAAATAAATG 57.550 37.500 9.46 0.00 0.00 2.32
151 152 6.461509 GCATCACCGGAAATCCTGAAATAAAT 60.462 38.462 9.46 0.00 0.00 1.40
152 153 5.163561 GCATCACCGGAAATCCTGAAATAAA 60.164 40.000 9.46 0.00 0.00 1.40
153 154 4.338118 GCATCACCGGAAATCCTGAAATAA 59.662 41.667 9.46 0.00 0.00 1.40
154 155 3.882888 GCATCACCGGAAATCCTGAAATA 59.117 43.478 9.46 0.00 0.00 1.40
155 156 2.689983 GCATCACCGGAAATCCTGAAAT 59.310 45.455 9.46 0.00 0.00 2.17
156 157 2.091541 GCATCACCGGAAATCCTGAAA 58.908 47.619 9.46 0.00 0.00 2.69
157 158 1.004161 TGCATCACCGGAAATCCTGAA 59.996 47.619 9.46 0.00 0.00 3.02
158 159 0.617935 TGCATCACCGGAAATCCTGA 59.382 50.000 9.46 0.00 0.00 3.86
159 160 0.734889 GTGCATCACCGGAAATCCTG 59.265 55.000 9.46 0.00 0.00 3.86
160 161 0.327924 TGTGCATCACCGGAAATCCT 59.672 50.000 9.46 0.00 32.73 3.24
161 162 1.392589 ATGTGCATCACCGGAAATCC 58.607 50.000 9.46 0.00 32.73 3.01
162 163 2.423185 TGAATGTGCATCACCGGAAATC 59.577 45.455 9.46 0.00 32.73 2.17
163 164 2.424601 CTGAATGTGCATCACCGGAAAT 59.575 45.455 9.46 0.00 32.73 2.17
164 165 1.811965 CTGAATGTGCATCACCGGAAA 59.188 47.619 9.46 0.00 32.73 3.13
165 166 1.271325 ACTGAATGTGCATCACCGGAA 60.271 47.619 9.46 0.00 32.73 4.30
166 167 0.324614 ACTGAATGTGCATCACCGGA 59.675 50.000 9.46 0.00 32.73 5.14
167 168 0.448990 CACTGAATGTGCATCACCGG 59.551 55.000 0.00 0.00 40.06 5.28
168 169 0.448990 CCACTGAATGTGCATCACCG 59.551 55.000 0.00 0.00 44.92 4.94
169 170 0.813184 CCCACTGAATGTGCATCACC 59.187 55.000 0.00 0.00 44.92 4.02
170 171 1.741706 CTCCCACTGAATGTGCATCAC 59.258 52.381 0.00 0.00 44.92 3.06
171 172 1.340308 CCTCCCACTGAATGTGCATCA 60.340 52.381 0.00 0.00 44.92 3.07
172 173 1.065199 TCCTCCCACTGAATGTGCATC 60.065 52.381 0.00 0.00 44.92 3.91
173 174 0.994247 TCCTCCCACTGAATGTGCAT 59.006 50.000 0.00 0.00 44.92 3.96
174 175 0.325933 CTCCTCCCACTGAATGTGCA 59.674 55.000 0.00 0.00 44.92 4.57
175 176 0.615331 TCTCCTCCCACTGAATGTGC 59.385 55.000 0.00 0.00 44.92 4.57
176 177 1.404717 CGTCTCCTCCCACTGAATGTG 60.405 57.143 0.00 0.00 45.80 3.21
177 178 0.898320 CGTCTCCTCCCACTGAATGT 59.102 55.000 0.00 0.00 0.00 2.71
178 179 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
179 180 1.187087 GACGTCTCCTCCCACTGAAT 58.813 55.000 8.70 0.00 0.00 2.57
180 181 0.112606 AGACGTCTCCTCCCACTGAA 59.887 55.000 13.58 0.00 0.00 3.02
181 182 0.322636 GAGACGTCTCCTCCCACTGA 60.323 60.000 31.24 0.00 37.02 3.41
182 183 1.649390 CGAGACGTCTCCTCCCACTG 61.649 65.000 33.85 17.12 39.79 3.66
183 184 1.377463 CGAGACGTCTCCTCCCACT 60.377 63.158 33.85 3.82 39.79 4.00
184 185 1.674980 ACGAGACGTCTCCTCCCAC 60.675 63.158 33.85 13.24 39.79 4.61
185 186 2.755049 ACGAGACGTCTCCTCCCA 59.245 61.111 33.85 0.00 39.79 4.37
195 196 6.293618 TCATTTTGAAATTTACGACGAGACG 58.706 36.000 0.00 0.00 39.31 4.18
196 197 9.916397 ATATCATTTTGAAATTTACGACGAGAC 57.084 29.630 0.00 0.00 0.00 3.36
197 198 9.914923 CATATCATTTTGAAATTTACGACGAGA 57.085 29.630 0.00 0.00 0.00 4.04
198 199 8.673275 GCATATCATTTTGAAATTTACGACGAG 58.327 33.333 0.00 0.00 0.00 4.18
199 200 7.642194 GGCATATCATTTTGAAATTTACGACGA 59.358 33.333 0.00 0.00 0.00 4.20
200 201 7.356396 CGGCATATCATTTTGAAATTTACGACG 60.356 37.037 0.00 0.00 0.00 5.12
201 202 7.096640 CCGGCATATCATTTTGAAATTTACGAC 60.097 37.037 0.00 0.00 0.00 4.34
202 203 6.915300 CCGGCATATCATTTTGAAATTTACGA 59.085 34.615 0.00 0.00 0.00 3.43
203 204 6.345723 GCCGGCATATCATTTTGAAATTTACG 60.346 38.462 24.80 0.00 0.00 3.18
204 205 6.701400 AGCCGGCATATCATTTTGAAATTTAC 59.299 34.615 31.54 0.00 0.00 2.01
205 206 6.815089 AGCCGGCATATCATTTTGAAATTTA 58.185 32.000 31.54 0.00 0.00 1.40
206 207 5.673514 AGCCGGCATATCATTTTGAAATTT 58.326 33.333 31.54 0.00 0.00 1.82
207 208 5.163426 TGAGCCGGCATATCATTTTGAAATT 60.163 36.000 31.54 0.00 0.00 1.82
208 209 4.341806 TGAGCCGGCATATCATTTTGAAAT 59.658 37.500 31.54 0.06 0.00 2.17
209 210 3.698539 TGAGCCGGCATATCATTTTGAAA 59.301 39.130 31.54 0.00 0.00 2.69
210 211 3.286353 TGAGCCGGCATATCATTTTGAA 58.714 40.909 31.54 0.00 0.00 2.69
211 212 2.880268 CTGAGCCGGCATATCATTTTGA 59.120 45.455 31.54 0.00 0.00 2.69
212 213 2.620115 ACTGAGCCGGCATATCATTTTG 59.380 45.455 31.54 13.72 0.00 2.44
213 214 2.880890 GACTGAGCCGGCATATCATTTT 59.119 45.455 31.54 10.68 0.00 1.82
214 215 2.105477 AGACTGAGCCGGCATATCATTT 59.895 45.455 31.54 13.22 0.00 2.32
215 216 1.696336 AGACTGAGCCGGCATATCATT 59.304 47.619 31.54 17.84 0.00 2.57
216 217 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
217 218 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
218 219 2.246719 AAAGACTGAGCCGGCATATC 57.753 50.000 31.54 18.63 0.00 1.63
219 220 2.965831 TCTAAAGACTGAGCCGGCATAT 59.034 45.455 31.54 8.11 0.00 1.78
220 221 2.384828 TCTAAAGACTGAGCCGGCATA 58.615 47.619 31.54 16.21 0.00 3.14
221 222 1.195115 TCTAAAGACTGAGCCGGCAT 58.805 50.000 31.54 14.28 0.00 4.40
222 223 0.973632 TTCTAAAGACTGAGCCGGCA 59.026 50.000 31.54 7.98 0.00 5.69
223 224 1.646189 CTTCTAAAGACTGAGCCGGC 58.354 55.000 21.89 21.89 0.00 6.13
224 225 1.550976 ACCTTCTAAAGACTGAGCCGG 59.449 52.381 0.00 0.00 0.00 6.13
225 226 2.611518 CACCTTCTAAAGACTGAGCCG 58.388 52.381 0.00 0.00 0.00 5.52
226 227 2.027653 AGCACCTTCTAAAGACTGAGCC 60.028 50.000 0.00 0.00 0.00 4.70
227 228 3.258228 GAGCACCTTCTAAAGACTGAGC 58.742 50.000 0.00 0.00 0.00 4.26
228 229 4.527509 TGAGCACCTTCTAAAGACTGAG 57.472 45.455 0.00 0.00 0.00 3.35
229 230 5.127845 CCTATGAGCACCTTCTAAAGACTGA 59.872 44.000 0.00 0.00 0.00 3.41
230 231 5.355596 CCTATGAGCACCTTCTAAAGACTG 58.644 45.833 0.00 0.00 0.00 3.51
231 232 4.407296 CCCTATGAGCACCTTCTAAAGACT 59.593 45.833 0.00 0.00 0.00 3.24
232 233 4.443598 CCCCTATGAGCACCTTCTAAAGAC 60.444 50.000 0.00 0.00 0.00 3.01
233 234 3.711704 CCCCTATGAGCACCTTCTAAAGA 59.288 47.826 0.00 0.00 0.00 2.52
234 235 3.456277 ACCCCTATGAGCACCTTCTAAAG 59.544 47.826 0.00 0.00 0.00 1.85
235 236 3.460825 ACCCCTATGAGCACCTTCTAAA 58.539 45.455 0.00 0.00 0.00 1.85
236 237 3.130734 ACCCCTATGAGCACCTTCTAA 57.869 47.619 0.00 0.00 0.00 2.10
237 238 2.868964 ACCCCTATGAGCACCTTCTA 57.131 50.000 0.00 0.00 0.00 2.10
238 239 2.683768 CTACCCCTATGAGCACCTTCT 58.316 52.381 0.00 0.00 0.00 2.85
239 240 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
240 241 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
241 242 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
242 243 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
243 244 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
244 245 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
245 246 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
246 247 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
247 248 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
248 249 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
249 250 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
250 251 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
251 252 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
252 253 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
253 254 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
254 255 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
255 256 0.812412 AACACACACGCACACCCTAC 60.812 55.000 0.00 0.00 0.00 3.18
256 257 0.531090 GAACACACACGCACACCCTA 60.531 55.000 0.00 0.00 0.00 3.53
257 258 1.817941 GAACACACACGCACACCCT 60.818 57.895 0.00 0.00 0.00 4.34
258 259 1.444119 ATGAACACACACGCACACCC 61.444 55.000 0.00 0.00 0.00 4.61
259 260 1.194547 CTATGAACACACACGCACACC 59.805 52.381 0.00 0.00 0.00 4.16
260 261 1.194547 CCTATGAACACACACGCACAC 59.805 52.381 0.00 0.00 0.00 3.82
261 262 1.507562 CCTATGAACACACACGCACA 58.492 50.000 0.00 0.00 0.00 4.57
262 263 0.796312 CCCTATGAACACACACGCAC 59.204 55.000 0.00 0.00 0.00 5.34
263 264 0.321210 CCCCTATGAACACACACGCA 60.321 55.000 0.00 0.00 0.00 5.24
264 265 0.321298 ACCCCTATGAACACACACGC 60.321 55.000 0.00 0.00 0.00 5.34
265 266 1.001520 TCACCCCTATGAACACACACG 59.998 52.381 0.00 0.00 0.00 4.49
266 267 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
267 268 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
268 269 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
269 270 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
270 271 4.442706 CATACACTCACCCCTATGAACAC 58.557 47.826 0.00 0.00 0.00 3.32
271 272 3.118408 GCATACACTCACCCCTATGAACA 60.118 47.826 0.00 0.00 0.00 3.18
272 273 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
273 274 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
274 275 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
275 276 1.412710 ACGCATACACTCACCCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
276 277 1.412710 CACGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
277 278 0.821517 CACGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 0.00 3.53
278 279 1.192146 ACACGCATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
279 280 1.019278 CACACGCATACACTCACCCC 61.019 60.000 0.00 0.00 0.00 4.95
280 281 0.320421 ACACACGCATACACTCACCC 60.320 55.000 0.00 0.00 0.00 4.61
281 282 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
282 283 5.278604 TCATATACACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
283 284 5.508200 TCATATACACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
284 285 4.383052 GCTCATATACACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
285 286 4.038042 AGCTCATATACACACGCATACACT 59.962 41.667 0.00 0.00 0.00 3.55
286 287 4.299155 AGCTCATATACACACGCATACAC 58.701 43.478 0.00 0.00 0.00 2.90
287 288 4.278419 AGAGCTCATATACACACGCATACA 59.722 41.667 17.77 0.00 0.00 2.29
288 289 4.799678 AGAGCTCATATACACACGCATAC 58.200 43.478 17.77 0.00 0.00 2.39
289 290 5.222631 CAAGAGCTCATATACACACGCATA 58.777 41.667 17.77 0.00 0.00 3.14
290 291 4.053983 CAAGAGCTCATATACACACGCAT 58.946 43.478 17.77 0.00 0.00 4.73
291 292 3.447742 CAAGAGCTCATATACACACGCA 58.552 45.455 17.77 0.00 0.00 5.24
292 293 2.219674 GCAAGAGCTCATATACACACGC 59.780 50.000 17.77 0.00 37.91 5.34
293 294 2.469147 CGCAAGAGCTCATATACACACG 59.531 50.000 17.77 2.52 43.02 4.49
294 295 3.448686 ACGCAAGAGCTCATATACACAC 58.551 45.455 17.77 0.00 43.62 3.82
295 296 3.381590 AGACGCAAGAGCTCATATACACA 59.618 43.478 17.77 0.00 43.62 3.72
296 297 3.733224 CAGACGCAAGAGCTCATATACAC 59.267 47.826 17.77 1.73 43.62 2.90
297 298 3.381590 ACAGACGCAAGAGCTCATATACA 59.618 43.478 17.77 0.00 43.62 2.29
298 299 3.971150 ACAGACGCAAGAGCTCATATAC 58.029 45.455 17.77 2.73 43.62 1.47
299 300 4.822350 AGTACAGACGCAAGAGCTCATATA 59.178 41.667 17.77 0.00 43.62 0.86
300 301 3.634448 AGTACAGACGCAAGAGCTCATAT 59.366 43.478 17.77 0.00 43.62 1.78
301 302 3.017442 AGTACAGACGCAAGAGCTCATA 58.983 45.455 17.77 0.00 43.62 2.15
302 303 1.821753 AGTACAGACGCAAGAGCTCAT 59.178 47.619 17.77 0.00 43.62 2.90
303 304 1.068264 CAGTACAGACGCAAGAGCTCA 60.068 52.381 17.77 0.00 43.62 4.26
304 305 1.068194 ACAGTACAGACGCAAGAGCTC 60.068 52.381 5.27 5.27 43.62 4.09
305 306 0.962489 ACAGTACAGACGCAAGAGCT 59.038 50.000 0.00 0.00 43.62 4.09
306 307 1.063806 CACAGTACAGACGCAAGAGC 58.936 55.000 0.00 0.00 43.62 4.09
307 308 2.423926 ACACAGTACAGACGCAAGAG 57.576 50.000 0.00 0.00 43.62 2.85
308 309 2.882927 AACACAGTACAGACGCAAGA 57.117 45.000 0.00 0.00 43.62 3.02
310 311 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
331 332 4.920376 CGTGAGGTCATGTTTGAGTTTTT 58.080 39.130 0.00 0.00 30.85 1.94
332 333 4.552166 CGTGAGGTCATGTTTGAGTTTT 57.448 40.909 0.00 0.00 30.85 2.43
380 381 1.521423 CGATTTTGACGTAGGCCGATC 59.479 52.381 0.00 0.00 40.70 3.69
381 382 1.567504 CGATTTTGACGTAGGCCGAT 58.432 50.000 0.00 0.00 40.70 4.18
444 459 0.389817 CGTGCGGGATTCTTGAGTCA 60.390 55.000 0.00 0.00 0.00 3.41
479 494 1.014352 ATCGATTTCCGGCCGAAAAG 58.986 50.000 30.73 20.43 43.61 2.27
484 499 2.542907 CCCAATCGATTTCCGGCCG 61.543 63.158 21.04 21.04 39.14 6.13
497 512 2.189521 GGATCCGACGTGCCCAAT 59.810 61.111 0.00 0.00 0.00 3.16
498 513 4.444838 CGGATCCGACGTGCCCAA 62.445 66.667 30.62 0.00 42.83 4.12
561 581 3.372554 CTTTCCCCTCTCGTCCCGC 62.373 68.421 0.00 0.00 0.00 6.13
606 643 1.965414 TGTGAATGAAGGGGGAGCTA 58.035 50.000 0.00 0.00 0.00 3.32
613 650 0.240945 GGTGCGTTGTGAATGAAGGG 59.759 55.000 0.00 0.00 0.00 3.95
640 680 4.112341 GGGCGTACGAGTGCGAGT 62.112 66.667 21.65 0.00 41.16 4.18
641 681 4.849329 GGGGCGTACGAGTGCGAG 62.849 72.222 21.65 0.00 41.16 5.03
643 683 4.508128 ATGGGGCGTACGAGTGCG 62.508 66.667 21.65 9.26 44.79 5.34
644 684 2.890474 CATGGGGCGTACGAGTGC 60.890 66.667 21.65 0.00 0.00 4.40
645 685 2.202878 CCATGGGGCGTACGAGTG 60.203 66.667 21.65 8.91 0.00 3.51
680 721 1.472552 GCGTTTTGGGGCTTCTGTTTT 60.473 47.619 0.00 0.00 0.00 2.43
686 727 1.006220 CTTGGCGTTTTGGGGCTTC 60.006 57.895 0.00 0.00 0.00 3.86
687 728 2.506957 CCTTGGCGTTTTGGGGCTT 61.507 57.895 0.00 0.00 0.00 4.35
690 731 4.356442 CGCCTTGGCGTTTTGGGG 62.356 66.667 24.03 0.00 0.00 4.96
769 811 4.347876 CCTCCACCCCAGAATTTTCTTTTT 59.652 41.667 0.00 0.00 34.74 1.94
770 812 3.903714 CCTCCACCCCAGAATTTTCTTTT 59.096 43.478 0.00 0.00 34.74 2.27
771 813 3.510459 CCTCCACCCCAGAATTTTCTTT 58.490 45.455 0.00 0.00 34.74 2.52
772 814 2.225369 CCCTCCACCCCAGAATTTTCTT 60.225 50.000 0.00 0.00 34.74 2.52
773 815 1.359130 CCCTCCACCCCAGAATTTTCT 59.641 52.381 0.00 0.00 38.25 2.52
774 816 1.619704 CCCCTCCACCCCAGAATTTTC 60.620 57.143 0.00 0.00 0.00 2.29
775 817 0.413434 CCCCTCCACCCCAGAATTTT 59.587 55.000 0.00 0.00 0.00 1.82
776 818 0.479589 TCCCCTCCACCCCAGAATTT 60.480 55.000 0.00 0.00 0.00 1.82
777 819 1.165782 TCCCCTCCACCCCAGAATT 59.834 57.895 0.00 0.00 0.00 2.17
778 820 1.619669 GTCCCCTCCACCCCAGAAT 60.620 63.158 0.00 0.00 0.00 2.40
779 821 2.204090 GTCCCCTCCACCCCAGAA 60.204 66.667 0.00 0.00 0.00 3.02
780 822 4.715130 CGTCCCCTCCACCCCAGA 62.715 72.222 0.00 0.00 0.00 3.86
1303 1352 5.094812 ACATGTGCGCACAGTATAAAATTG 58.905 37.500 41.77 32.78 45.48 2.32
1314 1367 0.801872 GTTCCATACATGTGCGCACA 59.198 50.000 41.97 41.97 46.44 4.57
1320 1373 4.724074 AATTGGCTGTTCCATACATGTG 57.276 40.909 9.11 0.00 46.04 3.21
1359 1412 7.097192 AGAAACTCGCAATGTTATCAGAACTA 58.903 34.615 0.00 0.00 0.00 2.24
1360 1413 5.934625 AGAAACTCGCAATGTTATCAGAACT 59.065 36.000 0.00 0.00 0.00 3.01
1376 1437 7.111593 CGTTCCAATTTTCAAACTAGAAACTCG 59.888 37.037 0.00 0.00 37.24 4.18
1378 1439 7.992008 TCGTTCCAATTTTCAAACTAGAAACT 58.008 30.769 0.00 0.00 37.24 2.66
1446 1507 5.519722 GTTGGATAACCACAACACAGAAAG 58.480 41.667 0.00 0.00 46.80 2.62
1454 1515 5.292589 CCGTACTATGTTGGATAACCACAAC 59.707 44.000 0.00 0.00 46.80 3.32
1457 1518 5.014808 ACCGTACTATGTTGGATAACCAC 57.985 43.478 0.00 0.00 46.80 4.16
1565 1627 8.969121 TGCATTGTAAAATTAACATGACAGAG 57.031 30.769 0.00 0.00 0.00 3.35
1567 1629 8.434661 GGTTGCATTGTAAAATTAACATGACAG 58.565 33.333 0.00 0.00 0.00 3.51
1579 1641 9.512435 CAAAAATCAAATGGTTGCATTGTAAAA 57.488 25.926 0.00 0.00 34.50 1.52
1583 1645 6.939132 TCAAAAATCAAATGGTTGCATTGT 57.061 29.167 0.00 0.00 34.50 2.71
1643 1706 6.612306 AGTTTGAAACTTCAAGTCTGAACAC 58.388 36.000 4.45 0.00 46.68 3.32
1666 1729 9.774742 GTGCTGAATTTCTTACTTGGTAATTAG 57.225 33.333 0.00 0.00 0.00 1.73
1672 1735 5.376625 TCAGTGCTGAATTTCTTACTTGGT 58.623 37.500 0.00 0.00 36.53 3.67
1751 1831 1.881973 TGTCTCATCTTGCTTGGCAAC 59.118 47.619 0.00 0.00 43.99 4.17
1805 1885 6.767456 TCTTTAATTAGTTTGGTGGACGGTA 58.233 36.000 0.00 0.00 0.00 4.02
1976 2056 3.330267 CTTGCAGAAGAGGTTAGTGGTC 58.670 50.000 0.00 0.00 0.00 4.02
2053 2133 9.594478 CAAAATAACAAAAGGTAATATCACCCC 57.406 33.333 0.00 0.00 39.62 4.95
2123 2203 1.279496 TCACCCCTGACAGGATTGAG 58.721 55.000 23.77 9.47 37.67 3.02
2138 2219 2.736144 TCGTGAGTACCATGTTCACC 57.264 50.000 6.61 0.00 38.34 4.02
2456 2542 8.253810 TGTAGATCAGAAAAGTGAGGTAATGAG 58.746 37.037 0.00 0.00 0.00 2.90
2534 2620 3.319405 AGAGACGCCAACGAGATAATGAT 59.681 43.478 0.00 0.00 43.93 2.45
2799 2886 5.812642 GTCAGACATAATTACTCACAGTGGG 59.187 44.000 0.00 0.00 0.00 4.61
2815 2902 7.550906 GGCTTAATTTAGTCAGAAGTCAGACAT 59.449 37.037 2.66 0.00 35.20 3.06
2890 2978 8.367660 TGTTGAGTAGACTTCTGAGGATTATT 57.632 34.615 0.00 0.00 0.00 1.40
2900 2988 3.381908 CCGGCTATGTTGAGTAGACTTCT 59.618 47.826 0.00 0.00 0.00 2.85
2932 3020 3.050089 TCACACCTTTCTCCTTTACCCA 58.950 45.455 0.00 0.00 0.00 4.51
2944 3032 1.839424 GCCAAGCCTATCACACCTTT 58.161 50.000 0.00 0.00 0.00 3.11
3166 3270 8.071177 GTAACCTACCAGGAACTATTAGACAA 57.929 38.462 0.00 0.00 37.67 3.18
3167 3271 7.651027 GTAACCTACCAGGAACTATTAGACA 57.349 40.000 0.00 0.00 37.67 3.41
3226 3330 9.158233 GTACATACTAAACAAAGGTTCTGCATA 57.842 33.333 0.00 0.00 35.82 3.14
3278 3497 3.551551 CAACAACAGTAAAGCCTTACGC 58.448 45.455 0.00 0.00 42.02 4.42
3361 3588 7.483580 TTTCTTAAAAGAGACCCCAAAACAA 57.516 32.000 0.00 0.00 36.22 2.83
3461 3712 5.316167 TGCACAGAAGTTAATGAGGATTGT 58.684 37.500 0.00 0.00 0.00 2.71
3876 4128 4.579454 ACGCGATAGTTGCTAATCCTAA 57.421 40.909 15.93 0.00 39.35 2.69
4172 4424 1.377333 GGTGTAGGCTCCAGCAACC 60.377 63.158 4.26 0.00 44.36 3.77
4394 4646 2.612721 CGCCTTAAGCCAGCCAATTTTT 60.613 45.455 0.00 0.00 38.78 1.94
4396 4648 0.532115 CGCCTTAAGCCAGCCAATTT 59.468 50.000 0.00 0.00 38.78 1.82
4398 4650 0.106519 ATCGCCTTAAGCCAGCCAAT 60.107 50.000 0.00 0.00 38.78 3.16
4400 4652 1.153168 GATCGCCTTAAGCCAGCCA 60.153 57.895 0.00 0.00 38.78 4.75
4401 4653 0.536006 ATGATCGCCTTAAGCCAGCC 60.536 55.000 0.00 0.00 38.78 4.85
4402 4654 2.169832 TATGATCGCCTTAAGCCAGC 57.830 50.000 0.00 0.00 38.78 4.85
4518 4782 5.490213 CAACAAACTTGTCTCGTAGTTGAC 58.510 41.667 0.00 0.00 41.31 3.18
4522 4786 3.527533 TGCAACAAACTTGTCTCGTAGT 58.472 40.909 0.00 0.00 41.31 2.73
4626 4897 5.992829 CGGTGCTGTATTATTATTGGTACCA 59.007 40.000 11.60 11.60 0.00 3.25
4665 5825 0.969917 ACCGAGCAGAGACATGAGCT 60.970 55.000 0.00 0.06 40.60 4.09
4812 5972 2.999063 AGGTTGGACCCGTACCCG 60.999 66.667 6.55 0.00 39.75 5.28
5057 6217 2.264794 CTCGCCCAGTTAAGCCGT 59.735 61.111 0.00 0.00 0.00 5.68
5066 6226 2.716017 GGAGGTCAGACTCGCCCAG 61.716 68.421 0.00 0.00 38.39 4.45
5071 6231 1.185618 TGGTTGGGAGGTCAGACTCG 61.186 60.000 0.00 0.00 38.39 4.18
5075 6235 1.185618 CGAGTGGTTGGGAGGTCAGA 61.186 60.000 0.00 0.00 0.00 3.27
5106 6279 1.148310 ATCAAACGCTTGTGGACGAG 58.852 50.000 0.00 0.00 33.94 4.18
5118 6291 4.437390 GCCACCAGAATACTGAATCAAACG 60.437 45.833 0.00 0.00 46.03 3.60
5119 6292 4.458989 TGCCACCAGAATACTGAATCAAAC 59.541 41.667 0.00 0.00 46.03 2.93
5121 6294 4.299586 TGCCACCAGAATACTGAATCAA 57.700 40.909 0.00 0.00 46.03 2.57
5122 6295 3.998913 TGCCACCAGAATACTGAATCA 57.001 42.857 0.00 0.00 46.03 2.57
5123 6296 3.378427 GGTTGCCACCAGAATACTGAATC 59.622 47.826 1.17 0.00 46.03 2.52
5124 6297 3.356290 GGTTGCCACCAGAATACTGAAT 58.644 45.455 1.17 0.00 46.03 2.57
5125 6298 2.790433 GGTTGCCACCAGAATACTGAA 58.210 47.619 1.17 0.00 46.03 3.02
5140 6319 0.179018 AGTCCACCAAGTCAGGTTGC 60.179 55.000 0.00 0.00 40.77 4.17
5142 6321 1.141053 GTCAGTCCACCAAGTCAGGTT 59.859 52.381 0.00 0.00 40.77 3.50
5144 6323 0.758734 TGTCAGTCCACCAAGTCAGG 59.241 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.