Multiple sequence alignment - TraesCS4D01G237700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G237700 chr4D 100.000 3427 0 0 1 3427 399959978 399956552 0.000000e+00 6329
1 TraesCS4D01G237700 chr4A 91.604 3466 182 59 1 3412 58112877 58109467 0.000000e+00 4687
2 TraesCS4D01G237700 chr4A 93.855 179 11 0 2232 2410 58107378 58107200 1.570000e-68 270
3 TraesCS4D01G237700 chr4A 82.008 239 26 9 2536 2757 121480428 121480190 1.620000e-43 187
4 TraesCS4D01G237700 chr4A 93.671 79 5 0 2439 2517 58105750 58105672 6.010000e-23 119
5 TraesCS4D01G237700 chr4B 89.917 2043 141 28 938 2950 494223258 494221251 0.000000e+00 2571
6 TraesCS4D01G237700 chr4B 93.946 958 39 9 1 941 494225099 494224144 0.000000e+00 1430
7 TraesCS4D01G237700 chr3B 91.870 123 8 1 2642 2762 605908157 605908035 1.640000e-38 171
8 TraesCS4D01G237700 chr3B 90.323 124 10 2 2640 2763 92344147 92344026 9.840000e-36 161
9 TraesCS4D01G237700 chr1D 83.420 193 23 7 2573 2758 24097129 24097319 1.640000e-38 171
10 TraesCS4D01G237700 chr3D 80.672 238 26 10 2535 2754 58475813 58475578 2.120000e-37 167
11 TraesCS4D01G237700 chr3A 89.313 131 14 0 2624 2754 620989998 620990128 7.610000e-37 165
12 TraesCS4D01G237700 chr5A 89.764 127 12 1 2624 2750 295089844 295089969 9.840000e-36 161
13 TraesCS4D01G237700 chr5D 86.364 132 18 0 2624 2755 220707643 220707774 9.910000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G237700 chr4D 399956552 399959978 3426 True 6329.0 6329 100.000000 1 3427 1 chr4D.!!$R1 3426
1 TraesCS4D01G237700 chr4A 58105672 58112877 7205 True 1692.0 4687 93.043333 1 3412 3 chr4A.!!$R2 3411
2 TraesCS4D01G237700 chr4B 494221251 494225099 3848 True 2000.5 2571 91.931500 1 2950 2 chr4B.!!$R1 2949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 727 0.748005 TTGGCTGGCTTAAGGCGATC 60.748 55.0 22.54 14.48 45.39 3.69 F
1416 2346 0.034896 TTTCCTCCTCGTCCACAAGC 59.965 55.0 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 2468 0.304098 CGGAGTAGCGGAAGTCGTAG 59.696 60.0 0.0 0.0 41.72 3.51 R
2557 3498 0.321919 TCAGGACTGCTTCATGCCAC 60.322 55.0 0.0 0.0 42.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 7.217028 TCTTTCTACCCTCCAGTATACTACA 57.783 40.000 4.74 0.00 0.00 2.74
121 122 7.288560 TCTTTCTACCCTCCAGTATACTACAG 58.711 42.308 4.74 4.30 0.00 2.74
174 175 7.092846 ACCTGTACCTCAGCTTCATAACTATTT 60.093 37.037 0.00 0.00 42.38 1.40
470 471 2.082231 CAGCTCTTCCATGTCTTGGTG 58.918 52.381 4.76 0.69 46.52 4.17
716 727 0.748005 TTGGCTGGCTTAAGGCGATC 60.748 55.000 22.54 14.48 45.39 3.69
735 746 5.409520 GCGATCATATTCAGCAACCTTCATA 59.590 40.000 0.00 0.00 0.00 2.15
816 830 3.227372 CTGTTCACAGCCGTGCACG 62.227 63.158 31.77 31.77 41.56 5.34
820 834 3.268603 CACAGCCGTGCACGTCAA 61.269 61.111 34.81 0.00 36.06 3.18
847 868 4.024556 CGAGACAAGTTTGTTGCAGAAGAT 60.025 41.667 0.00 0.00 42.43 2.40
963 1873 2.666862 CCGCGGCTGTTGTTGGTA 60.667 61.111 14.67 0.00 0.00 3.25
1008 1918 5.686834 CAAAATATCGCTCACATGGATCTG 58.313 41.667 0.00 0.00 0.00 2.90
1355 2265 2.357034 GTTCTTCGGCTCCACGCA 60.357 61.111 0.00 0.00 41.67 5.24
1364 2274 3.023591 GCTCCACGCACGGCTTAAC 62.024 63.158 0.00 0.00 38.92 2.01
1416 2346 0.034896 TTTCCTCCTCGTCCACAAGC 59.965 55.000 0.00 0.00 0.00 4.01
1419 2355 1.006102 CTCCTCGTCCACAAGCGTT 60.006 57.895 0.00 0.00 0.00 4.84
1424 2360 1.531149 CTCGTCCACAAGCGTTTGATT 59.469 47.619 19.42 0.00 37.73 2.57
1429 2365 3.496884 GTCCACAAGCGTTTGATTCAGTA 59.503 43.478 19.42 0.00 37.73 2.74
1432 2368 5.088739 CCACAAGCGTTTGATTCAGTATTC 58.911 41.667 19.42 0.00 37.73 1.75
1438 2374 4.437390 GCGTTTGATTCAGTATTCTGGTGG 60.437 45.833 0.00 0.00 41.59 4.61
1440 2376 3.998913 TGATTCAGTATTCTGGTGGCA 57.001 42.857 0.00 0.00 41.59 4.92
1442 2378 4.009675 TGATTCAGTATTCTGGTGGCAAC 58.990 43.478 0.00 0.00 41.59 4.17
1465 2401 1.141053 GACTTGGTGGACTGACAGGTT 59.859 52.381 7.51 0.00 0.00 3.50
1601 2537 2.853914 GCCTGCAACTTCGACGAC 59.146 61.111 0.00 0.00 0.00 4.34
2081 3017 2.764128 AGCATCATCGGGGTCGGT 60.764 61.111 0.00 0.00 36.95 4.69
2180 3116 1.064060 GGCGACATAAACATGGTGAGC 59.936 52.381 0.00 2.78 0.00 4.26
2328 3264 1.079543 CTCGAGGCTGGTGGAACTG 60.080 63.158 3.91 0.00 36.74 3.16
2410 3346 5.126779 AGATAGATGTAGAGTGCACGAAGA 58.873 41.667 12.01 0.00 0.00 2.87
2412 3348 2.159503 AGATGTAGAGTGCACGAAGACG 60.160 50.000 12.01 0.00 45.75 4.18
2520 3461 8.717717 AGAACCAGGATCATAATTTCATAGACA 58.282 33.333 0.00 0.00 0.00 3.41
2525 3466 7.279536 CAGGATCATAATTTCATAGACATCGGG 59.720 40.741 0.00 0.00 0.00 5.14
2545 3486 5.883673 TCGGGTAAAAGTTCCCAAATGATAG 59.116 40.000 0.00 0.00 43.57 2.08
2549 3490 5.405935 AAAAGTTCCCAAATGATAGGTGC 57.594 39.130 0.00 0.00 0.00 5.01
2554 3495 2.244510 TCCCAAATGATAGGTGCCACAT 59.755 45.455 0.00 0.00 0.00 3.21
2557 3498 2.363038 CAAATGATAGGTGCCACATGGG 59.637 50.000 0.00 0.00 40.85 4.00
2578 3532 2.475666 GCATGAAGCAGTCCTGACC 58.524 57.895 0.00 0.00 44.79 4.02
2612 3566 9.190858 CAATTAAAATTGTCATCCGAAAAGACA 57.809 29.630 7.18 0.00 40.61 3.41
2622 3576 6.196538 GTCATCCGAAAAGACAAAACAAACTC 59.803 38.462 0.00 0.00 32.68 3.01
2647 3603 7.704472 TCAAATAAATTGAAGCACGAAAGTTGT 59.296 29.630 0.00 0.00 43.51 3.32
2650 3606 3.398954 TTGAAGCACGAAAGTTGTCAC 57.601 42.857 0.00 0.00 46.40 3.67
2683 3640 1.815421 GTTGCCATCCTCGCGTCAT 60.815 57.895 5.77 0.00 0.00 3.06
2692 3649 3.034721 TCCTCGCGTCATTAAACTTGT 57.965 42.857 5.77 0.00 0.00 3.16
2698 3655 6.089920 TCGCGTCATTAAACTTGTCATAAG 57.910 37.500 5.77 0.00 0.00 1.73
2701 3658 7.012943 CGCGTCATTAAACTTGTCATAAGAAA 58.987 34.615 0.00 0.00 0.00 2.52
2702 3659 7.692291 CGCGTCATTAAACTTGTCATAAGAAAT 59.308 33.333 0.00 0.00 0.00 2.17
2708 3665 9.840427 ATTAAACTTGTCATAAGAAATGTTCGG 57.160 29.630 0.00 0.00 30.47 4.30
2718 3675 2.489329 AGAAATGTTCGGAGTTGCCATG 59.511 45.455 0.00 0.00 35.94 3.66
2721 3678 1.210155 GTTCGGAGTTGCCATGTGC 59.790 57.895 0.00 0.00 41.77 4.57
2778 3735 8.403606 CTAAAAGTTTAGGACGTGAATATCGT 57.596 34.615 0.00 0.00 37.16 3.73
2811 3769 1.028905 CTAGGAGAGAGGAGCCAACG 58.971 60.000 0.00 0.00 0.00 4.10
2874 3835 4.184629 CCAAAACTACTCCTGATTCTCCG 58.815 47.826 0.00 0.00 0.00 4.63
2941 3902 8.417884 TGGACCAATAAAAACACTCCTAAAAAG 58.582 33.333 0.00 0.00 0.00 2.27
2966 3927 4.640805 ACATACTACGCGACAAAAAGTG 57.359 40.909 15.93 3.52 0.00 3.16
2967 3928 3.120786 ACATACTACGCGACAAAAAGTGC 60.121 43.478 15.93 0.00 0.00 4.40
2969 3930 1.937899 ACTACGCGACAAAAAGTGCTT 59.062 42.857 15.93 0.00 0.00 3.91
2974 3943 2.713976 CGCGACAAAAAGTGCTTTAGTG 59.286 45.455 0.00 6.94 31.63 2.74
2977 3946 4.976116 GCGACAAAAAGTGCTTTAGTGAAT 59.024 37.500 12.37 0.00 31.63 2.57
3048 4019 4.084011 TCCAATGGCCCAAAAGAAAAAG 57.916 40.909 0.00 0.00 0.00 2.27
3052 4023 4.769345 ATGGCCCAAAAGAAAAAGTTCA 57.231 36.364 0.00 0.00 36.09 3.18
3053 4024 4.769345 TGGCCCAAAAGAAAAAGTTCAT 57.231 36.364 0.00 0.00 36.09 2.57
3175 4146 7.615582 TTTGCCATCATGTAAAACACAAAAA 57.384 28.000 0.00 0.00 41.55 1.94
3244 4215 4.776795 AAATTTACAATGGTCCCGTGAC 57.223 40.909 0.00 0.00 40.98 3.67
3246 4217 3.426787 TTTACAATGGTCCCGTGACAT 57.573 42.857 0.00 0.00 43.65 3.06
3248 4219 0.960364 ACAATGGTCCCGTGACATGC 60.960 55.000 0.00 0.00 43.65 4.06
3258 4229 2.288702 CCCGTGACATGCAAAAATTCCA 60.289 45.455 0.00 0.00 0.00 3.53
3275 4246 4.844998 TTCCAATGAACGATGAAAGCAA 57.155 36.364 0.00 0.00 0.00 3.91
3276 4247 4.844998 TCCAATGAACGATGAAAGCAAA 57.155 36.364 0.00 0.00 0.00 3.68
3331 4302 9.033481 CCATGGCAATAACAGTAAATTTACATG 57.967 33.333 26.06 21.67 36.12 3.21
3333 4304 8.128322 TGGCAATAACAGTAAATTTACATGGT 57.872 30.769 26.06 20.93 36.12 3.55
3374 4346 7.356540 GCCACGGCAAAATAAAAAGTAAATTT 58.643 30.769 2.36 0.00 41.49 1.82
3375 4347 7.322461 GCCACGGCAAAATAAAAAGTAAATTTG 59.678 33.333 2.36 0.00 41.49 2.32
3380 4352 8.198366 GCAAAATAAAAAGTAAATTTGCCACG 57.802 30.769 9.26 0.00 44.03 4.94
3381 4353 7.853437 GCAAAATAAAAAGTAAATTTGCCACGT 59.147 29.630 9.26 0.00 44.03 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 4.579454 ACGCGATAGTTGCTAATCCTAA 57.421 40.909 15.93 0.00 39.35 2.69
470 471 1.377333 GGTGTAGGCTCCAGCAACC 60.377 63.158 4.26 0.00 44.36 3.77
693 704 1.066929 CGCCTTAAGCCAGCCAATTTT 60.067 47.619 0.00 0.00 38.78 1.82
694 705 0.532115 CGCCTTAAGCCAGCCAATTT 59.468 50.000 0.00 0.00 38.78 1.82
695 706 0.323360 TCGCCTTAAGCCAGCCAATT 60.323 50.000 0.00 0.00 38.78 2.32
696 707 0.106519 ATCGCCTTAAGCCAGCCAAT 60.107 50.000 0.00 0.00 38.78 3.16
699 710 0.536006 ATGATCGCCTTAAGCCAGCC 60.536 55.000 0.00 0.00 38.78 4.85
700 711 2.169832 TATGATCGCCTTAAGCCAGC 57.830 50.000 0.00 0.00 38.78 4.85
816 830 5.490213 CAACAAACTTGTCTCGTAGTTGAC 58.510 41.667 0.00 0.00 41.31 3.18
820 834 3.527533 TGCAACAAACTTGTCTCGTAGT 58.472 40.909 0.00 0.00 41.31 2.73
924 945 5.992829 CGGTGCTGTATTATTATTGGTACCA 59.007 40.000 11.60 11.60 0.00 3.25
963 1873 0.969917 ACCGAGCAGAGACATGAGCT 60.970 55.000 0.00 0.06 40.60 4.09
1110 2020 2.999063 AGGTTGGACCCGTACCCG 60.999 66.667 6.55 0.00 39.75 5.28
1355 2265 2.264794 CTCGCCCAGTTAAGCCGT 59.735 61.111 0.00 0.00 0.00 5.68
1364 2274 2.716017 GGAGGTCAGACTCGCCCAG 61.716 68.421 0.00 0.00 38.39 4.45
1369 2279 1.185618 TGGTTGGGAGGTCAGACTCG 61.186 60.000 0.00 0.00 38.39 4.18
1373 2283 1.185618 CGAGTGGTTGGGAGGTCAGA 61.186 60.000 0.00 0.00 0.00 3.27
1416 2346 4.437390 GCCACCAGAATACTGAATCAAACG 60.437 45.833 0.00 0.00 46.03 3.60
1419 2355 4.299586 TGCCACCAGAATACTGAATCAA 57.700 40.909 0.00 0.00 46.03 2.57
1424 2360 2.489938 GGTTGCCACCAGAATACTGA 57.510 50.000 1.17 0.00 46.03 3.41
1438 2374 0.179018 AGTCCACCAAGTCAGGTTGC 60.179 55.000 0.00 0.00 40.77 4.17
1440 2376 1.141053 GTCAGTCCACCAAGTCAGGTT 59.859 52.381 0.00 0.00 40.77 3.50
1442 2378 0.758734 TGTCAGTCCACCAAGTCAGG 59.241 55.000 0.00 0.00 0.00 3.86
1532 2468 0.304098 CGGAGTAGCGGAAGTCGTAG 59.696 60.000 0.00 0.00 41.72 3.51
1930 2866 2.367344 GCCGTGTACGTCGTGTTCC 61.367 63.158 8.47 0.00 37.74 3.62
1935 2871 2.353839 GTGTGCCGTGTACGTCGT 60.354 61.111 2.21 2.21 37.74 4.34
2081 3017 4.357947 GTCTCCGGCGTGCTGACA 62.358 66.667 6.01 0.00 0.00 3.58
2180 3116 1.153289 CTTCTCGATGGCCACCAGG 60.153 63.158 8.16 0.00 36.75 4.45
2328 3264 4.372656 CCAATCTTCGGATGGAGTTCTAC 58.627 47.826 0.00 0.00 34.49 2.59
2410 3346 2.614983 ACGCATTACTCAAACCAAACGT 59.385 40.909 0.00 0.00 0.00 3.99
2412 3348 5.959652 AAAACGCATTACTCAAACCAAAC 57.040 34.783 0.00 0.00 0.00 2.93
2417 3358 6.577427 CACCTCTAAAAACGCATTACTCAAAC 59.423 38.462 0.00 0.00 0.00 2.93
2494 3435 8.717717 TGTCTATGAAATTATGATCCTGGTTCT 58.282 33.333 6.35 0.00 0.00 3.01
2525 3466 6.330278 GCACCTATCATTTGGGAACTTTTAC 58.670 40.000 0.00 0.00 0.00 2.01
2554 3495 1.303561 GACTGCTTCATGCCACCCA 60.304 57.895 0.00 0.00 42.00 4.51
2557 3498 0.321919 TCAGGACTGCTTCATGCCAC 60.322 55.000 0.00 0.00 42.00 5.01
2563 3512 3.297134 AAAAAGGTCAGGACTGCTTCA 57.703 42.857 0.00 0.00 0.00 3.02
2594 3548 6.142818 TGTTTTGTCTTTTCGGATGACAAT 57.857 33.333 16.59 0.00 45.92 2.71
2602 3556 6.698359 TTTGAGTTTGTTTTGTCTTTTCGG 57.302 33.333 0.00 0.00 0.00 4.30
2611 3565 9.985318 TGCTTCAATTTATTTGAGTTTGTTTTG 57.015 25.926 0.00 0.00 44.90 2.44
2612 3566 9.986833 GTGCTTCAATTTATTTGAGTTTGTTTT 57.013 25.926 0.00 0.00 44.90 2.43
2616 3570 7.621832 TCGTGCTTCAATTTATTTGAGTTTG 57.378 32.000 0.00 0.00 44.90 2.93
2622 3576 7.840489 ACAACTTTCGTGCTTCAATTTATTTG 58.160 30.769 0.00 0.00 36.61 2.32
2630 3586 2.222931 CGTGACAACTTTCGTGCTTCAA 60.223 45.455 0.00 0.00 0.00 2.69
2683 3640 9.058174 TCCGAACATTTCTTATGACAAGTTTAA 57.942 29.630 0.00 0.00 0.00 1.52
2692 3649 4.394920 GGCAACTCCGAACATTTCTTATGA 59.605 41.667 0.00 0.00 0.00 2.15
2698 3655 2.228822 ACATGGCAACTCCGAACATTTC 59.771 45.455 0.00 0.00 37.80 2.17
2701 3658 1.167851 CACATGGCAACTCCGAACAT 58.832 50.000 0.00 0.00 37.80 2.71
2702 3659 1.514678 GCACATGGCAACTCCGAACA 61.515 55.000 0.00 0.00 43.97 3.18
2718 3675 2.253758 ACACATGTGGCACGAGCAC 61.254 57.895 28.64 3.97 44.61 4.40
2778 3735 3.555966 TCTCCTAGATCGAATGTCAGCA 58.444 45.455 0.00 0.00 0.00 4.41
2811 3769 4.201958 GTCTCGTAGCGAACTAAATCGTTC 59.798 45.833 0.00 0.00 44.49 3.95
2901 3862 9.512588 TTTTATTGGTCCAATGCATTTTTATGT 57.487 25.926 24.85 0.00 35.54 2.29
2914 3875 7.899648 TTTAGGAGTGTTTTTATTGGTCCAA 57.100 32.000 6.80 6.80 0.00 3.53
2941 3902 6.892951 CACTTTTTGTCGCGTAGTATGTATTC 59.107 38.462 5.77 0.00 0.00 1.75
3028 3999 3.819368 ACTTTTTCTTTTGGGCCATTGG 58.181 40.909 7.26 0.00 0.00 3.16
3053 4024 9.448438 GCCTCCATGTACATATGTAAATTGATA 57.552 33.333 17.07 2.55 31.52 2.15
3153 4124 6.257411 CACTTTTTGTGTTTTACATGATGGCA 59.743 34.615 0.00 0.00 41.53 4.92
3217 4188 7.664731 TCACGGGACCATTGTAAATTTAGTTTA 59.335 33.333 0.00 0.00 0.00 2.01
3220 4191 5.413523 GTCACGGGACCATTGTAAATTTAGT 59.586 40.000 6.52 0.00 38.12 2.24
3221 4192 5.413213 TGTCACGGGACCATTGTAAATTTAG 59.587 40.000 16.75 0.00 43.65 1.85
3222 4193 5.314529 TGTCACGGGACCATTGTAAATTTA 58.685 37.500 16.75 0.00 43.65 1.40
3223 4194 4.145807 TGTCACGGGACCATTGTAAATTT 58.854 39.130 16.75 0.00 43.65 1.82
3238 4209 3.023946 TGGAATTTTTGCATGTCACGG 57.976 42.857 0.00 0.00 0.00 4.94
3239 4210 4.685165 TCATTGGAATTTTTGCATGTCACG 59.315 37.500 0.00 0.00 0.00 4.35
3244 4215 5.842619 TCGTTCATTGGAATTTTTGCATG 57.157 34.783 0.00 0.00 35.05 4.06
3246 4217 5.536260 TCATCGTTCATTGGAATTTTTGCA 58.464 33.333 0.00 0.00 35.05 4.08
3248 4219 7.011189 GCTTTCATCGTTCATTGGAATTTTTG 58.989 34.615 0.00 0.00 35.05 2.44
3276 4247 9.737844 AAAAAGTATACATCCATGGCAATTTTT 57.262 25.926 6.96 8.63 0.00 1.94
3331 4302 6.386654 CCGTGGCAAAATTATATTATGGACC 58.613 40.000 0.00 0.00 0.00 4.46
3333 4304 6.019779 GCCGTGGCAAAATTATATTATGGA 57.980 37.500 5.89 0.00 41.49 3.41
3374 4346 9.991388 GTCAAAATTACTTTAATATACGTGGCA 57.009 29.630 0.00 0.00 0.00 4.92
3375 4347 9.991388 TGTCAAAATTACTTTAATATACGTGGC 57.009 29.630 0.00 0.00 0.00 5.01
3387 4359 9.218440 CCTTTATTGCCATGTCAAAATTACTTT 57.782 29.630 0.00 0.00 0.00 2.66
3388 4360 8.374743 ACCTTTATTGCCATGTCAAAATTACTT 58.625 29.630 0.00 0.00 0.00 2.24
3389 4361 7.906327 ACCTTTATTGCCATGTCAAAATTACT 58.094 30.769 0.00 0.00 0.00 2.24
3390 4362 9.646427 TTACCTTTATTGCCATGTCAAAATTAC 57.354 29.630 0.00 0.00 0.00 1.89
3392 4364 9.737844 ATTTACCTTTATTGCCATGTCAAAATT 57.262 25.926 0.00 0.00 0.00 1.82
3393 4365 9.737844 AATTTACCTTTATTGCCATGTCAAAAT 57.262 25.926 0.00 0.00 0.00 1.82
3394 4366 9.566432 AAATTTACCTTTATTGCCATGTCAAAA 57.434 25.926 0.00 0.00 0.00 2.44
3395 4367 8.997323 CAAATTTACCTTTATTGCCATGTCAAA 58.003 29.630 0.00 0.00 0.00 2.69
3396 4368 7.118971 GCAAATTTACCTTTATTGCCATGTCAA 59.881 33.333 0.00 0.00 40.25 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.