Multiple sequence alignment - TraesCS4D01G237200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G237200 chr4D 100.000 3512 0 0 1 3512 399191285 399187774 0.000000e+00 6486.0
1 TraesCS4D01G237200 chr4D 81.099 619 84 24 320 926 84604766 84605363 6.870000e-127 464.0
2 TraesCS4D01G237200 chr4A 93.353 3069 124 35 481 3512 56511761 56508736 0.000000e+00 4464.0
3 TraesCS4D01G237200 chr4A 91.463 82 6 1 2823 2904 504200668 504200588 1.030000e-20 111.0
4 TraesCS4D01G237200 chr4B 93.493 2797 105 31 481 3242 492225874 492223120 0.000000e+00 4085.0
5 TraesCS4D01G237200 chr4B 97.321 224 5 1 3289 3512 492222785 492222563 2.560000e-101 379.0
6 TraesCS4D01G237200 chr4B 96.429 56 2 0 3237 3292 492222962 492222907 3.730000e-15 93.5
7 TraesCS4D01G237200 chr4B 90.385 52 4 1 2810 2861 643762925 643762975 2.260000e-07 67.6
8 TraesCS4D01G237200 chr7A 82.057 457 64 16 481 926 60636813 60637262 1.190000e-99 374.0
9 TraesCS4D01G237200 chr7A 79.921 508 74 26 218 713 57670867 57670376 7.220000e-92 348.0
10 TraesCS4D01G237200 chr7A 81.971 416 54 17 481 882 44353632 44353224 2.020000e-87 333.0
11 TraesCS4D01G237200 chr7A 80.477 461 65 21 481 926 44350118 44349668 2.610000e-86 329.0
12 TraesCS4D01G237200 chr1D 82.028 434 61 13 305 728 244622084 244622510 1.550000e-93 353.0
13 TraesCS4D01G237200 chr7B 77.914 652 70 47 306 926 737179826 737180434 4.340000e-89 339.0
14 TraesCS4D01G237200 chr7B 80.702 456 59 18 486 926 737480833 737481274 9.400000e-86 327.0
15 TraesCS4D01G237200 chr2D 82.020 406 51 18 310 706 568269726 568270118 3.380000e-85 326.0
16 TraesCS4D01G237200 chr1B 80.306 457 65 21 483 926 628649398 628649842 4.370000e-84 322.0
17 TraesCS4D01G237200 chr1B 100.000 29 0 0 2869 2897 633922085 633922113 2.000000e-03 54.7
18 TraesCS4D01G237200 chr5D 82.071 396 49 18 321 704 95327610 95327995 5.660000e-83 318.0
19 TraesCS4D01G237200 chr7D 76.752 314 39 26 254 555 56233295 56233586 1.020000e-30 145.0
20 TraesCS4D01G237200 chr7D 82.609 92 10 4 2821 2910 20942831 20942744 3.760000e-10 76.8
21 TraesCS4D01G237200 chr1A 92.857 42 3 0 2858 2899 530886966 530886925 1.050000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G237200 chr4D 399187774 399191285 3511 True 6486.000000 6486 100.000000 1 3512 1 chr4D.!!$R1 3511
1 TraesCS4D01G237200 chr4D 84604766 84605363 597 False 464.000000 464 81.099000 320 926 1 chr4D.!!$F1 606
2 TraesCS4D01G237200 chr4A 56508736 56511761 3025 True 4464.000000 4464 93.353000 481 3512 1 chr4A.!!$R1 3031
3 TraesCS4D01G237200 chr4B 492222563 492225874 3311 True 1519.166667 4085 95.747667 481 3512 3 chr4B.!!$R1 3031
4 TraesCS4D01G237200 chr7A 44349668 44353632 3964 True 331.000000 333 81.224000 481 926 2 chr7A.!!$R2 445
5 TraesCS4D01G237200 chr7B 737179826 737180434 608 False 339.000000 339 77.914000 306 926 1 chr7B.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.026803 GATCTTCGCGGAACACATGC 59.973 55.0 6.13 0.00 0.00 4.06 F
130 131 0.037734 GGTCAAGGTGGTGTAAGGGG 59.962 60.0 0.00 0.00 0.00 4.79 F
143 144 0.045008 TAAGGGGCCCCACATGAGTA 59.955 55.0 42.48 18.38 38.92 2.59 F
208 209 0.323451 GGTCCCCTCGAGCCATTTTT 60.323 55.0 6.99 0.00 32.53 1.94 F
899 4519 0.462047 CCCTTAACGCGAGGATTGCT 60.462 55.0 15.93 0.00 45.68 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 4947 1.080722 TAACCGGGCTAGGGTTCCA 59.919 57.895 6.32 0.00 44.25 3.53 R
2109 5750 1.503347 ACCCCAGGAACAAACTCCAAT 59.497 47.619 0.00 0.00 38.02 3.16 R
2132 5773 0.312102 GCACTGAACCCTTGCAAGAC 59.688 55.000 28.05 15.18 36.22 3.01 R
2206 5847 7.201956 GCTAGAAGGACTCATCTCCAATTCTAA 60.202 40.741 0.00 0.00 31.50 2.10 R
2739 6384 2.029623 GCTCTCGGTACCATAAGTCCA 58.970 52.381 13.54 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.574354 AGGCTTCAAGATGGGATCTTC 57.426 47.619 0.00 0.00 46.17 2.87
21 22 2.158842 AGGCTTCAAGATGGGATCTTCG 60.159 50.000 0.00 0.00 46.17 3.79
22 23 1.601430 GCTTCAAGATGGGATCTTCGC 59.399 52.381 0.00 0.00 46.17 4.70
23 24 1.863454 CTTCAAGATGGGATCTTCGCG 59.137 52.381 0.00 0.00 46.17 5.87
24 25 0.104855 TCAAGATGGGATCTTCGCGG 59.895 55.000 6.13 0.00 46.17 6.46
25 26 0.104855 CAAGATGGGATCTTCGCGGA 59.895 55.000 6.13 0.00 46.17 5.54
26 27 0.830648 AAGATGGGATCTTCGCGGAA 59.169 50.000 6.13 0.00 46.17 4.30
27 28 0.105039 AGATGGGATCTTCGCGGAAC 59.895 55.000 6.13 0.00 35.76 3.62
28 29 0.179084 GATGGGATCTTCGCGGAACA 60.179 55.000 6.13 0.00 31.21 3.18
29 30 0.462047 ATGGGATCTTCGCGGAACAC 60.462 55.000 6.13 0.00 31.21 3.32
30 31 1.079405 GGGATCTTCGCGGAACACA 60.079 57.895 6.13 0.00 0.00 3.72
31 32 0.462047 GGGATCTTCGCGGAACACAT 60.462 55.000 6.13 0.00 0.00 3.21
32 33 0.652592 GGATCTTCGCGGAACACATG 59.347 55.000 6.13 0.00 0.00 3.21
33 34 0.026803 GATCTTCGCGGAACACATGC 59.973 55.000 6.13 0.00 0.00 4.06
34 35 0.391661 ATCTTCGCGGAACACATGCT 60.392 50.000 6.13 0.00 0.00 3.79
35 36 0.602638 TCTTCGCGGAACACATGCTT 60.603 50.000 6.13 0.00 0.00 3.91
36 37 0.453282 CTTCGCGGAACACATGCTTG 60.453 55.000 6.13 0.00 0.00 4.01
37 38 2.456594 TTCGCGGAACACATGCTTGC 62.457 55.000 6.13 0.00 0.00 4.01
38 39 2.502510 GCGGAACACATGCTTGCG 60.503 61.111 11.78 11.78 35.74 4.85
39 40 2.965147 GCGGAACACATGCTTGCGA 61.965 57.895 18.12 0.00 34.69 5.10
40 41 1.154413 CGGAACACATGCTTGCGAC 60.154 57.895 10.91 0.00 34.69 5.19
41 42 1.154413 GGAACACATGCTTGCGACG 60.154 57.895 0.00 0.00 0.00 5.12
42 43 1.565156 GGAACACATGCTTGCGACGA 61.565 55.000 0.00 0.00 0.00 4.20
43 44 0.451135 GAACACATGCTTGCGACGAC 60.451 55.000 0.00 0.00 0.00 4.34
44 45 2.094539 CACATGCTTGCGACGACG 59.905 61.111 2.12 2.12 42.93 5.12
45 46 2.049526 ACATGCTTGCGACGACGA 60.050 55.556 12.29 0.00 42.66 4.20
46 47 1.446099 ACATGCTTGCGACGACGAT 60.446 52.632 12.29 0.00 42.66 3.73
47 48 0.179148 ACATGCTTGCGACGACGATA 60.179 50.000 12.29 0.00 42.66 2.92
48 49 0.920664 CATGCTTGCGACGACGATAA 59.079 50.000 12.29 4.45 42.66 1.75
49 50 1.323235 CATGCTTGCGACGACGATAAA 59.677 47.619 12.29 1.08 42.66 1.40
50 51 1.420378 TGCTTGCGACGACGATAAAA 58.580 45.000 12.29 0.00 42.66 1.52
51 52 1.996898 TGCTTGCGACGACGATAAAAT 59.003 42.857 12.29 0.00 42.66 1.82
52 53 2.413796 TGCTTGCGACGACGATAAAATT 59.586 40.909 12.29 0.00 42.66 1.82
53 54 3.613299 TGCTTGCGACGACGATAAAATTA 59.387 39.130 12.29 0.00 42.66 1.40
54 55 4.269123 TGCTTGCGACGACGATAAAATTAT 59.731 37.500 12.29 0.00 42.66 1.28
55 56 5.195379 GCTTGCGACGACGATAAAATTATT 58.805 37.500 12.29 0.00 42.66 1.40
56 57 5.333621 GCTTGCGACGACGATAAAATTATTC 59.666 40.000 12.29 0.00 42.66 1.75
57 58 6.578020 TTGCGACGACGATAAAATTATTCT 57.422 33.333 12.29 0.00 42.66 2.40
58 59 5.958428 TGCGACGACGATAAAATTATTCTG 58.042 37.500 12.29 0.00 42.66 3.02
59 60 5.744819 TGCGACGACGATAAAATTATTCTGA 59.255 36.000 12.29 0.00 42.66 3.27
60 61 6.253942 TGCGACGACGATAAAATTATTCTGAA 59.746 34.615 12.29 0.00 42.66 3.02
61 62 7.114920 GCGACGACGATAAAATTATTCTGAAA 58.885 34.615 12.29 0.00 42.66 2.69
62 63 7.633281 GCGACGACGATAAAATTATTCTGAAAA 59.367 33.333 12.29 0.00 42.66 2.29
63 64 9.632969 CGACGACGATAAAATTATTCTGAAAAT 57.367 29.630 0.00 0.00 42.66 1.82
71 72 9.927668 ATAAAATTATTCTGAAAATATGGCGGG 57.072 29.630 0.00 0.00 0.00 6.13
72 73 5.982890 ATTATTCTGAAAATATGGCGGGG 57.017 39.130 0.00 0.00 0.00 5.73
73 74 2.065899 TTCTGAAAATATGGCGGGGG 57.934 50.000 0.00 0.00 0.00 5.40
92 93 5.767277 GGGGGTTTCGATATTTATAGGGA 57.233 43.478 0.00 0.00 0.00 4.20
93 94 6.130692 GGGGGTTTCGATATTTATAGGGAA 57.869 41.667 0.00 0.00 0.00 3.97
94 95 6.728411 GGGGGTTTCGATATTTATAGGGAAT 58.272 40.000 0.00 0.00 0.00 3.01
95 96 7.179966 GGGGGTTTCGATATTTATAGGGAATT 58.820 38.462 0.00 0.00 0.00 2.17
96 97 8.330993 GGGGGTTTCGATATTTATAGGGAATTA 58.669 37.037 0.00 0.00 0.00 1.40
97 98 9.916360 GGGGTTTCGATATTTATAGGGAATTAT 57.084 33.333 0.00 0.00 0.00 1.28
109 110 9.807921 TTTATAGGGAATTATGGAAGTGGAATC 57.192 33.333 0.00 0.00 0.00 2.52
110 111 5.732331 AGGGAATTATGGAAGTGGAATCA 57.268 39.130 0.00 0.00 0.00 2.57
111 112 5.699143 AGGGAATTATGGAAGTGGAATCAG 58.301 41.667 0.00 0.00 0.00 2.90
112 113 4.829492 GGGAATTATGGAAGTGGAATCAGG 59.171 45.833 0.00 0.00 0.00 3.86
113 114 5.449553 GGAATTATGGAAGTGGAATCAGGT 58.550 41.667 0.00 0.00 0.00 4.00
114 115 5.532779 GGAATTATGGAAGTGGAATCAGGTC 59.467 44.000 0.00 0.00 0.00 3.85
115 116 5.715439 ATTATGGAAGTGGAATCAGGTCA 57.285 39.130 0.00 0.00 0.00 4.02
116 117 5.512942 TTATGGAAGTGGAATCAGGTCAA 57.487 39.130 0.00 0.00 0.00 3.18
117 118 3.423539 TGGAAGTGGAATCAGGTCAAG 57.576 47.619 0.00 0.00 0.00 3.02
118 119 2.040278 TGGAAGTGGAATCAGGTCAAGG 59.960 50.000 0.00 0.00 0.00 3.61
119 120 2.040412 GGAAGTGGAATCAGGTCAAGGT 59.960 50.000 0.00 0.00 0.00 3.50
120 121 2.867109 AGTGGAATCAGGTCAAGGTG 57.133 50.000 0.00 0.00 0.00 4.00
121 122 1.352352 AGTGGAATCAGGTCAAGGTGG 59.648 52.381 0.00 0.00 0.00 4.61
122 123 1.073923 GTGGAATCAGGTCAAGGTGGT 59.926 52.381 0.00 0.00 0.00 4.16
123 124 1.073763 TGGAATCAGGTCAAGGTGGTG 59.926 52.381 0.00 0.00 0.00 4.17
124 125 1.073923 GGAATCAGGTCAAGGTGGTGT 59.926 52.381 0.00 0.00 0.00 4.16
125 126 2.304761 GGAATCAGGTCAAGGTGGTGTA 59.695 50.000 0.00 0.00 0.00 2.90
126 127 3.244770 GGAATCAGGTCAAGGTGGTGTAA 60.245 47.826 0.00 0.00 0.00 2.41
127 128 3.703001 ATCAGGTCAAGGTGGTGTAAG 57.297 47.619 0.00 0.00 0.00 2.34
128 129 1.697432 TCAGGTCAAGGTGGTGTAAGG 59.303 52.381 0.00 0.00 0.00 2.69
129 130 1.064825 AGGTCAAGGTGGTGTAAGGG 58.935 55.000 0.00 0.00 0.00 3.95
130 131 0.037734 GGTCAAGGTGGTGTAAGGGG 59.962 60.000 0.00 0.00 0.00 4.79
131 132 0.608308 GTCAAGGTGGTGTAAGGGGC 60.608 60.000 0.00 0.00 0.00 5.80
132 133 1.304134 CAAGGTGGTGTAAGGGGCC 60.304 63.158 0.00 0.00 0.00 5.80
133 134 2.544745 AAGGTGGTGTAAGGGGCCC 61.545 63.158 17.12 17.12 0.00 5.80
134 135 4.056584 GGTGGTGTAAGGGGCCCC 62.057 72.222 35.90 35.90 0.00 5.80
135 136 3.261677 GTGGTGTAAGGGGCCCCA 61.262 66.667 42.48 21.63 38.92 4.96
136 137 3.261677 TGGTGTAAGGGGCCCCAC 61.262 66.667 42.48 31.75 38.92 4.61
137 138 3.261677 GGTGTAAGGGGCCCCACA 61.262 66.667 42.48 34.02 38.92 4.17
138 139 2.622447 GGTGTAAGGGGCCCCACAT 61.622 63.158 42.48 28.80 38.92 3.21
139 140 1.379843 GTGTAAGGGGCCCCACATG 60.380 63.158 42.48 0.00 38.92 3.21
140 141 1.542628 TGTAAGGGGCCCCACATGA 60.543 57.895 42.48 19.28 38.92 3.07
141 142 1.227383 GTAAGGGGCCCCACATGAG 59.773 63.158 42.48 0.00 38.92 2.90
142 143 1.230149 TAAGGGGCCCCACATGAGT 60.230 57.895 42.48 18.12 38.92 3.41
143 144 0.045008 TAAGGGGCCCCACATGAGTA 59.955 55.000 42.48 18.38 38.92 2.59
144 145 1.281925 AAGGGGCCCCACATGAGTAG 61.282 60.000 42.48 0.00 38.92 2.57
145 146 2.757124 GGGGCCCCACATGAGTAGG 61.757 68.421 37.61 0.00 35.81 3.18
146 147 2.001269 GGGCCCCACATGAGTAGGT 61.001 63.158 12.23 0.00 0.00 3.08
147 148 1.224592 GGCCCCACATGAGTAGGTG 59.775 63.158 0.00 0.00 38.28 4.00
148 149 1.452108 GCCCCACATGAGTAGGTGC 60.452 63.158 0.00 0.00 37.28 5.01
149 150 1.224592 CCCCACATGAGTAGGTGCC 59.775 63.158 0.00 0.00 37.28 5.01
150 151 1.224592 CCCACATGAGTAGGTGCCC 59.775 63.158 0.00 0.00 37.28 5.36
151 152 1.224592 CCACATGAGTAGGTGCCCC 59.775 63.158 0.00 0.00 37.28 5.80
152 153 1.224592 CACATGAGTAGGTGCCCCC 59.775 63.158 0.00 0.00 31.29 5.40
167 168 4.684134 CCCCCAGGGCACACAAGG 62.684 72.222 0.00 0.00 35.35 3.61
168 169 3.902112 CCCCAGGGCACACAAGGT 61.902 66.667 0.00 0.00 0.00 3.50
176 177 2.515991 CACACAAGGTGCCCGTGT 60.516 61.111 6.91 6.91 46.32 4.49
179 180 4.189580 ACAAGGTGCCCGTGTGCT 62.190 61.111 10.94 0.00 43.94 4.40
180 181 3.357079 CAAGGTGCCCGTGTGCTC 61.357 66.667 0.19 0.00 0.00 4.26
181 182 4.643387 AAGGTGCCCGTGTGCTCC 62.643 66.667 0.00 0.00 43.57 4.70
206 207 2.998949 GGTCCCCTCGAGCCATTT 59.001 61.111 6.99 0.00 32.53 2.32
207 208 1.303282 GGTCCCCTCGAGCCATTTT 59.697 57.895 6.99 0.00 32.53 1.82
208 209 0.323451 GGTCCCCTCGAGCCATTTTT 60.323 55.000 6.99 0.00 32.53 1.94
252 253 8.807948 TCTTTCTTTCTTTCTTTTCTTCTCCA 57.192 30.769 0.00 0.00 0.00 3.86
253 254 9.413734 TCTTTCTTTCTTTCTTTTCTTCTCCAT 57.586 29.630 0.00 0.00 0.00 3.41
281 282 9.771915 TTTTCATTCTTTCTTGCATTTTGTTTC 57.228 25.926 0.00 0.00 0.00 2.78
282 283 8.721019 TTCATTCTTTCTTGCATTTTGTTTCT 57.279 26.923 0.00 0.00 0.00 2.52
283 284 8.721019 TCATTCTTTCTTGCATTTTGTTTCTT 57.279 26.923 0.00 0.00 0.00 2.52
284 285 8.819974 TCATTCTTTCTTGCATTTTGTTTCTTC 58.180 29.630 0.00 0.00 0.00 2.87
285 286 6.810888 TCTTTCTTGCATTTTGTTTCTTCG 57.189 33.333 0.00 0.00 0.00 3.79
286 287 6.329496 TCTTTCTTGCATTTTGTTTCTTCGT 58.671 32.000 0.00 0.00 0.00 3.85
287 288 6.472163 TCTTTCTTGCATTTTGTTTCTTCGTC 59.528 34.615 0.00 0.00 0.00 4.20
288 289 5.499139 TCTTGCATTTTGTTTCTTCGTCT 57.501 34.783 0.00 0.00 0.00 4.18
289 290 5.890334 TCTTGCATTTTGTTTCTTCGTCTT 58.110 33.333 0.00 0.00 0.00 3.01
290 291 6.329496 TCTTGCATTTTGTTTCTTCGTCTTT 58.671 32.000 0.00 0.00 0.00 2.52
291 292 5.947503 TGCATTTTGTTTCTTCGTCTTTG 57.052 34.783 0.00 0.00 0.00 2.77
292 293 5.406649 TGCATTTTGTTTCTTCGTCTTTGT 58.593 33.333 0.00 0.00 0.00 2.83
293 294 5.866633 TGCATTTTGTTTCTTCGTCTTTGTT 59.133 32.000 0.00 0.00 0.00 2.83
294 295 6.367422 TGCATTTTGTTTCTTCGTCTTTGTTT 59.633 30.769 0.00 0.00 0.00 2.83
295 296 7.095439 TGCATTTTGTTTCTTCGTCTTTGTTTT 60.095 29.630 0.00 0.00 0.00 2.43
296 297 7.744276 GCATTTTGTTTCTTCGTCTTTGTTTTT 59.256 29.630 0.00 0.00 0.00 1.94
425 454 9.227490 CTACATTTTCGTATGTGTCAAAAACAA 57.773 29.630 9.66 0.00 40.31 2.83
427 456 9.092876 ACATTTTCGTATGTGTCAAAAACAATT 57.907 25.926 0.00 0.00 40.31 2.32
433 462 9.239002 TCGTATGTGTCAAAAACAATTTTTAGG 57.761 29.630 0.00 0.00 40.65 2.69
463 493 8.837059 GTGATCAAACATTTTTGTATACACGTC 58.163 33.333 4.68 0.00 42.51 4.34
476 506 0.882927 ACACGTCCAACATTGTCCGG 60.883 55.000 0.00 0.00 0.00 5.14
894 4514 2.718073 GCTCCCCTTAACGCGAGGA 61.718 63.158 15.93 7.82 36.33 3.71
899 4519 0.462047 CCCTTAACGCGAGGATTGCT 60.462 55.000 15.93 0.00 45.68 3.91
929 4549 2.210961 GCTTAAAGCGAGACATACCCC 58.789 52.381 0.00 0.00 0.00 4.95
972 4613 1.354040 CTCTTGTCGTGCTGATCCAC 58.646 55.000 0.00 0.00 0.00 4.02
1013 4654 0.670546 ACGACCATGAAGCTTCGGTG 60.671 55.000 25.26 22.18 35.77 4.94
1014 4655 0.670546 CGACCATGAAGCTTCGGTGT 60.671 55.000 25.26 18.99 0.00 4.16
1306 4947 0.922626 GCCTCCTGAAATCCTTCCCT 59.077 55.000 0.00 0.00 0.00 4.20
1370 5011 0.704664 GGTTCCAAATCTCCTGGGGT 59.295 55.000 0.00 0.00 34.46 4.95
1416 5057 4.576463 CCTCAAAATCTACACATACAGCCC 59.424 45.833 0.00 0.00 0.00 5.19
1418 5059 2.240493 AATCTACACATACAGCCCGC 57.760 50.000 0.00 0.00 0.00 6.13
1425 5066 1.264749 ACATACAGCCCGCCTCTTCA 61.265 55.000 0.00 0.00 0.00 3.02
1460 5101 7.117523 GCAAAATCTACACATAGAGCCTATCTG 59.882 40.741 0.00 0.00 40.84 2.90
1491 5132 2.738480 CGAACCCTCCACGTGGAA 59.262 61.111 35.36 20.35 44.91 3.53
1609 5250 3.157252 GGCAGATGGAGGCGGAGA 61.157 66.667 0.00 0.00 0.00 3.71
1632 5273 2.044352 GGGGGCGCAAATGGTACT 60.044 61.111 10.83 0.00 0.00 2.73
1659 5300 0.978146 ATCGCCTAGCTGTGTCCCTT 60.978 55.000 0.00 0.00 0.00 3.95
1774 5415 4.612264 ACACTGACCGTAAAATACACCT 57.388 40.909 0.00 0.00 0.00 4.00
2109 5750 4.162320 CCAGGTGATCTGAAGGCTAAAGTA 59.838 45.833 0.00 0.00 46.18 2.24
2132 5773 1.328279 GAGTTTGTTCCTGGGGTTGG 58.672 55.000 0.00 0.00 0.00 3.77
2579 6220 6.526674 GCCTTGTACATGTTTATAAGTTGCAC 59.473 38.462 2.30 0.00 0.00 4.57
2597 6238 0.905357 ACGCCAGTGCTCTTATCCTT 59.095 50.000 0.00 0.00 34.43 3.36
2642 6287 2.299297 AGATCCGTCTTGTCGTTTTCCT 59.701 45.455 0.00 0.00 0.00 3.36
2736 6381 9.847224 ATAAATAGTTTGGACTTATGGTACCAG 57.153 33.333 21.41 9.46 37.33 4.00
2737 6382 6.886178 ATAGTTTGGACTTATGGTACCAGT 57.114 37.500 21.41 12.94 37.33 4.00
2738 6383 5.578157 AGTTTGGACTTATGGTACCAGTT 57.422 39.130 21.41 7.02 33.85 3.16
2739 6384 5.948842 AGTTTGGACTTATGGTACCAGTTT 58.051 37.500 21.41 6.21 33.85 2.66
2740 6385 5.768164 AGTTTGGACTTATGGTACCAGTTTG 59.232 40.000 21.41 12.31 33.85 2.93
2741 6386 4.295141 TGGACTTATGGTACCAGTTTGG 57.705 45.455 21.41 10.57 45.02 3.28
2742 6387 3.911260 TGGACTTATGGTACCAGTTTGGA 59.089 43.478 21.41 0.00 40.96 3.53
2743 6388 4.259356 GGACTTATGGTACCAGTTTGGAC 58.741 47.826 21.41 8.04 40.96 4.02
2744 6389 4.019591 GGACTTATGGTACCAGTTTGGACT 60.020 45.833 21.41 3.00 40.96 3.85
2745 6390 5.514310 GGACTTATGGTACCAGTTTGGACTT 60.514 44.000 21.41 2.21 40.96 3.01
2746 6391 6.296030 GGACTTATGGTACCAGTTTGGACTTA 60.296 42.308 21.41 1.15 40.96 2.24
2747 6392 7.266905 ACTTATGGTACCAGTTTGGACTTAT 57.733 36.000 21.41 0.86 40.96 1.73
2748 6393 7.110155 ACTTATGGTACCAGTTTGGACTTATG 58.890 38.462 21.41 8.84 40.96 1.90
2749 6394 4.295141 TGGTACCAGTTTGGACTTATGG 57.705 45.455 11.60 0.00 40.96 2.74
2750 6395 3.653836 TGGTACCAGTTTGGACTTATGGT 59.346 43.478 11.60 0.35 40.96 3.55
2751 6396 4.845225 TGGTACCAGTTTGGACTTATGGTA 59.155 41.667 11.60 0.00 40.96 3.25
2752 6397 5.181009 GGTACCAGTTTGGACTTATGGTAC 58.819 45.833 19.66 19.66 44.43 3.34
2843 6488 5.168569 TCCGATCCATATTAATTGTCGCTC 58.831 41.667 0.00 0.00 0.00 5.03
2856 6501 4.742438 TTGTCGCTCATTTAGGACAAAC 57.258 40.909 3.23 0.00 39.93 2.93
3119 6764 7.390718 ACTGTTTTCTTAGCAAGAACGGAATAT 59.609 33.333 9.83 0.00 46.53 1.28
3470 7404 3.575805 TGCCTTTCAAAGATTGTTCCCT 58.424 40.909 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.105039 GTTCCGCGAAGATCCCATCT 59.895 55.000 8.23 0.00 42.61 2.90
9 10 0.179084 TGTTCCGCGAAGATCCCATC 60.179 55.000 8.23 0.00 0.00 3.51
10 11 0.462047 GTGTTCCGCGAAGATCCCAT 60.462 55.000 8.23 0.00 0.00 4.00
11 12 1.079405 GTGTTCCGCGAAGATCCCA 60.079 57.895 8.23 0.00 0.00 4.37
12 13 0.462047 ATGTGTTCCGCGAAGATCCC 60.462 55.000 8.23 0.00 0.00 3.85
13 14 0.652592 CATGTGTTCCGCGAAGATCC 59.347 55.000 8.23 0.00 0.00 3.36
14 15 0.026803 GCATGTGTTCCGCGAAGATC 59.973 55.000 8.23 0.00 0.00 2.75
15 16 0.391661 AGCATGTGTTCCGCGAAGAT 60.392 50.000 8.23 0.00 0.00 2.40
16 17 0.602638 AAGCATGTGTTCCGCGAAGA 60.603 50.000 8.23 0.00 0.00 2.87
17 18 0.453282 CAAGCATGTGTTCCGCGAAG 60.453 55.000 8.23 0.00 0.00 3.79
18 19 1.573932 CAAGCATGTGTTCCGCGAA 59.426 52.632 8.23 0.00 0.00 4.70
19 20 2.965147 GCAAGCATGTGTTCCGCGA 61.965 57.895 8.23 0.00 0.00 5.87
20 21 2.502510 GCAAGCATGTGTTCCGCG 60.503 61.111 0.00 0.00 0.00 6.46
21 22 2.502510 CGCAAGCATGTGTTCCGC 60.503 61.111 0.00 0.00 32.29 5.54
22 23 1.154413 GTCGCAAGCATGTGTTCCG 60.154 57.895 2.02 0.00 38.25 4.30
23 24 1.154413 CGTCGCAAGCATGTGTTCC 60.154 57.895 2.02 0.00 38.25 3.62
24 25 0.451135 GTCGTCGCAAGCATGTGTTC 60.451 55.000 2.02 0.00 38.25 3.18
25 26 1.569493 GTCGTCGCAAGCATGTGTT 59.431 52.632 2.02 0.00 38.25 3.32
26 27 2.657757 CGTCGTCGCAAGCATGTGT 61.658 57.895 2.02 0.00 38.25 3.72
27 28 1.686566 ATCGTCGTCGCAAGCATGTG 61.687 55.000 0.00 0.00 38.44 3.21
28 29 0.179148 TATCGTCGTCGCAAGCATGT 60.179 50.000 0.00 0.00 36.96 3.21
29 30 0.920664 TTATCGTCGTCGCAAGCATG 59.079 50.000 0.00 0.00 36.96 4.06
30 31 1.635844 TTTATCGTCGTCGCAAGCAT 58.364 45.000 0.00 0.00 36.96 3.79
31 32 1.420378 TTTTATCGTCGTCGCAAGCA 58.580 45.000 0.00 0.00 36.96 3.91
32 33 2.713927 ATTTTATCGTCGTCGCAAGC 57.286 45.000 0.00 0.00 36.96 4.01
33 34 6.566427 CAGAATAATTTTATCGTCGTCGCAAG 59.434 38.462 0.00 0.00 36.96 4.01
34 35 6.253942 TCAGAATAATTTTATCGTCGTCGCAA 59.746 34.615 0.00 0.00 36.96 4.85
35 36 5.744819 TCAGAATAATTTTATCGTCGTCGCA 59.255 36.000 0.00 0.00 36.96 5.10
36 37 6.194031 TCAGAATAATTTTATCGTCGTCGC 57.806 37.500 0.00 0.00 36.96 5.19
37 38 9.632969 ATTTTCAGAATAATTTTATCGTCGTCG 57.367 29.630 0.00 0.00 38.55 5.12
45 46 9.927668 CCCGCCATATTTTCAGAATAATTTTAT 57.072 29.630 0.00 0.00 0.00 1.40
46 47 8.364142 CCCCGCCATATTTTCAGAATAATTTTA 58.636 33.333 0.00 0.00 0.00 1.52
47 48 7.216494 CCCCGCCATATTTTCAGAATAATTTT 58.784 34.615 0.00 0.00 0.00 1.82
48 49 6.239572 CCCCCGCCATATTTTCAGAATAATTT 60.240 38.462 0.00 0.00 0.00 1.82
49 50 5.245977 CCCCCGCCATATTTTCAGAATAATT 59.754 40.000 0.00 0.00 0.00 1.40
50 51 4.772100 CCCCCGCCATATTTTCAGAATAAT 59.228 41.667 0.00 0.00 0.00 1.28
51 52 4.148838 CCCCCGCCATATTTTCAGAATAA 58.851 43.478 0.00 0.00 0.00 1.40
52 53 3.761897 CCCCCGCCATATTTTCAGAATA 58.238 45.455 0.00 0.00 0.00 1.75
53 54 2.597455 CCCCCGCCATATTTTCAGAAT 58.403 47.619 0.00 0.00 0.00 2.40
54 55 2.065899 CCCCCGCCATATTTTCAGAA 57.934 50.000 0.00 0.00 0.00 3.02
55 56 3.819245 CCCCCGCCATATTTTCAGA 57.181 52.632 0.00 0.00 0.00 3.27
70 71 5.767277 TCCCTATAAATATCGAAACCCCC 57.233 43.478 0.00 0.00 0.00 5.40
71 72 9.916360 ATAATTCCCTATAAATATCGAAACCCC 57.084 33.333 0.00 0.00 0.00 4.95
83 84 9.807921 GATTCCACTTCCATAATTCCCTATAAA 57.192 33.333 0.00 0.00 0.00 1.40
84 85 8.954729 TGATTCCACTTCCATAATTCCCTATAA 58.045 33.333 0.00 0.00 0.00 0.98
85 86 8.518720 TGATTCCACTTCCATAATTCCCTATA 57.481 34.615 0.00 0.00 0.00 1.31
86 87 7.406620 TGATTCCACTTCCATAATTCCCTAT 57.593 36.000 0.00 0.00 0.00 2.57
87 88 6.183361 CCTGATTCCACTTCCATAATTCCCTA 60.183 42.308 0.00 0.00 0.00 3.53
88 89 5.399497 CCTGATTCCACTTCCATAATTCCCT 60.399 44.000 0.00 0.00 0.00 4.20
89 90 4.829492 CCTGATTCCACTTCCATAATTCCC 59.171 45.833 0.00 0.00 0.00 3.97
90 91 5.449553 ACCTGATTCCACTTCCATAATTCC 58.550 41.667 0.00 0.00 0.00 3.01
91 92 6.122277 TGACCTGATTCCACTTCCATAATTC 58.878 40.000 0.00 0.00 0.00 2.17
92 93 6.078456 TGACCTGATTCCACTTCCATAATT 57.922 37.500 0.00 0.00 0.00 1.40
93 94 5.715439 TGACCTGATTCCACTTCCATAAT 57.285 39.130 0.00 0.00 0.00 1.28
94 95 5.500234 CTTGACCTGATTCCACTTCCATAA 58.500 41.667 0.00 0.00 0.00 1.90
95 96 4.080356 CCTTGACCTGATTCCACTTCCATA 60.080 45.833 0.00 0.00 0.00 2.74
96 97 3.308688 CCTTGACCTGATTCCACTTCCAT 60.309 47.826 0.00 0.00 0.00 3.41
97 98 2.040278 CCTTGACCTGATTCCACTTCCA 59.960 50.000 0.00 0.00 0.00 3.53
98 99 2.040412 ACCTTGACCTGATTCCACTTCC 59.960 50.000 0.00 0.00 0.00 3.46
99 100 3.077359 CACCTTGACCTGATTCCACTTC 58.923 50.000 0.00 0.00 0.00 3.01
100 101 2.224867 CCACCTTGACCTGATTCCACTT 60.225 50.000 0.00 0.00 0.00 3.16
101 102 1.352352 CCACCTTGACCTGATTCCACT 59.648 52.381 0.00 0.00 0.00 4.00
102 103 1.073923 ACCACCTTGACCTGATTCCAC 59.926 52.381 0.00 0.00 0.00 4.02
103 104 1.073763 CACCACCTTGACCTGATTCCA 59.926 52.381 0.00 0.00 0.00 3.53
104 105 1.073923 ACACCACCTTGACCTGATTCC 59.926 52.381 0.00 0.00 0.00 3.01
105 106 2.568623 ACACCACCTTGACCTGATTC 57.431 50.000 0.00 0.00 0.00 2.52
106 107 3.244911 CCTTACACCACCTTGACCTGATT 60.245 47.826 0.00 0.00 0.00 2.57
107 108 2.305927 CCTTACACCACCTTGACCTGAT 59.694 50.000 0.00 0.00 0.00 2.90
108 109 1.697432 CCTTACACCACCTTGACCTGA 59.303 52.381 0.00 0.00 0.00 3.86
109 110 1.271379 CCCTTACACCACCTTGACCTG 60.271 57.143 0.00 0.00 0.00 4.00
110 111 1.064825 CCCTTACACCACCTTGACCT 58.935 55.000 0.00 0.00 0.00 3.85
111 112 0.037734 CCCCTTACACCACCTTGACC 59.962 60.000 0.00 0.00 0.00 4.02
112 113 0.608308 GCCCCTTACACCACCTTGAC 60.608 60.000 0.00 0.00 0.00 3.18
113 114 1.765074 GCCCCTTACACCACCTTGA 59.235 57.895 0.00 0.00 0.00 3.02
114 115 1.304134 GGCCCCTTACACCACCTTG 60.304 63.158 0.00 0.00 0.00 3.61
115 116 2.544745 GGGCCCCTTACACCACCTT 61.545 63.158 12.23 0.00 0.00 3.50
116 117 2.939353 GGGCCCCTTACACCACCT 60.939 66.667 12.23 0.00 0.00 4.00
117 118 4.056584 GGGGCCCCTTACACCACC 62.057 72.222 35.49 1.84 0.00 4.61
118 119 3.261677 TGGGGCCCCTTACACCAC 61.262 66.667 40.66 12.40 36.94 4.16
119 120 3.261677 GTGGGGCCCCTTACACCA 61.262 66.667 40.66 17.34 36.94 4.17
120 121 2.622447 ATGTGGGGCCCCTTACACC 61.622 63.158 40.66 20.78 36.94 4.16
121 122 1.379843 CATGTGGGGCCCCTTACAC 60.380 63.158 40.66 29.85 36.94 2.90
122 123 1.542628 TCATGTGGGGCCCCTTACA 60.543 57.895 40.66 35.35 36.94 2.41
123 124 1.227383 CTCATGTGGGGCCCCTTAC 59.773 63.158 40.66 30.98 36.94 2.34
124 125 0.045008 TACTCATGTGGGGCCCCTTA 59.955 55.000 40.66 28.98 36.94 2.69
125 126 1.230149 TACTCATGTGGGGCCCCTT 60.230 57.895 40.66 23.06 36.94 3.95
126 127 1.694169 CTACTCATGTGGGGCCCCT 60.694 63.158 40.66 21.92 36.94 4.79
127 128 2.757124 CCTACTCATGTGGGGCCCC 61.757 68.421 36.14 36.14 40.63 5.80
128 129 2.919043 CCTACTCATGTGGGGCCC 59.081 66.667 18.17 18.17 40.63 5.80
151 152 3.902112 ACCTTGTGTGCCCTGGGG 61.902 66.667 16.03 4.75 38.57 4.96
152 153 2.598394 CACCTTGTGTGCCCTGGG 60.598 66.667 8.86 8.86 38.34 4.45
190 191 3.266240 AAAAATGGCTCGAGGGGAC 57.734 52.632 15.58 0.00 0.00 4.46
226 227 9.243105 TGGAGAAGAAAAGAAAGAAAGAAAGAA 57.757 29.630 0.00 0.00 0.00 2.52
227 228 8.807948 TGGAGAAGAAAAGAAAGAAAGAAAGA 57.192 30.769 0.00 0.00 0.00 2.52
255 256 9.771915 GAAACAAAATGCAAGAAAGAATGAAAA 57.228 25.926 0.00 0.00 0.00 2.29
256 257 9.165035 AGAAACAAAATGCAAGAAAGAATGAAA 57.835 25.926 0.00 0.00 0.00 2.69
257 258 8.721019 AGAAACAAAATGCAAGAAAGAATGAA 57.279 26.923 0.00 0.00 0.00 2.57
258 259 8.721019 AAGAAACAAAATGCAAGAAAGAATGA 57.279 26.923 0.00 0.00 0.00 2.57
259 260 7.790673 CGAAGAAACAAAATGCAAGAAAGAATG 59.209 33.333 0.00 0.00 0.00 2.67
260 261 7.492344 ACGAAGAAACAAAATGCAAGAAAGAAT 59.508 29.630 0.00 0.00 0.00 2.40
261 262 6.811170 ACGAAGAAACAAAATGCAAGAAAGAA 59.189 30.769 0.00 0.00 0.00 2.52
262 263 6.329496 ACGAAGAAACAAAATGCAAGAAAGA 58.671 32.000 0.00 0.00 0.00 2.52
263 264 6.473455 AGACGAAGAAACAAAATGCAAGAAAG 59.527 34.615 0.00 0.00 0.00 2.62
264 265 6.329496 AGACGAAGAAACAAAATGCAAGAAA 58.671 32.000 0.00 0.00 0.00 2.52
265 266 5.890334 AGACGAAGAAACAAAATGCAAGAA 58.110 33.333 0.00 0.00 0.00 2.52
266 267 5.499139 AGACGAAGAAACAAAATGCAAGA 57.501 34.783 0.00 0.00 0.00 3.02
267 268 6.034898 ACAAAGACGAAGAAACAAAATGCAAG 59.965 34.615 0.00 0.00 0.00 4.01
268 269 5.866633 ACAAAGACGAAGAAACAAAATGCAA 59.133 32.000 0.00 0.00 0.00 4.08
269 270 5.406649 ACAAAGACGAAGAAACAAAATGCA 58.593 33.333 0.00 0.00 0.00 3.96
270 271 5.949233 ACAAAGACGAAGAAACAAAATGC 57.051 34.783 0.00 0.00 0.00 3.56
296 297 5.799213 TGGAGAAGAAACAAAAGGCAAAAA 58.201 33.333 0.00 0.00 0.00 1.94
297 298 5.413309 TGGAGAAGAAACAAAAGGCAAAA 57.587 34.783 0.00 0.00 0.00 2.44
298 299 5.612725 ATGGAGAAGAAACAAAAGGCAAA 57.387 34.783 0.00 0.00 0.00 3.68
299 300 5.612725 AATGGAGAAGAAACAAAAGGCAA 57.387 34.783 0.00 0.00 0.00 4.52
300 301 5.612725 AAATGGAGAAGAAACAAAAGGCA 57.387 34.783 0.00 0.00 0.00 4.75
301 302 6.925610 AAAAATGGAGAAGAAACAAAAGGC 57.074 33.333 0.00 0.00 0.00 4.35
384 413 9.965824 ACGAAAATGTAGAGTGAAAATGAAAAT 57.034 25.926 0.00 0.00 0.00 1.82
390 419 8.999431 ACACATACGAAAATGTAGAGTGAAAAT 58.001 29.630 12.96 0.00 38.01 1.82
445 474 6.621316 TGTTGGACGTGTATACAAAAATGT 57.379 33.333 7.25 1.64 0.00 2.71
463 493 1.234615 AAGCGTCCGGACAATGTTGG 61.235 55.000 32.80 16.33 0.00 3.77
883 4503 0.535335 AGGAGCAATCCTCGCGTTAA 59.465 50.000 5.77 0.00 41.71 2.01
884 4504 0.179111 CAGGAGCAATCCTCGCGTTA 60.179 55.000 5.77 0.00 41.71 3.18
894 4514 0.250234 TAAGCGAGCACAGGAGCAAT 59.750 50.000 0.00 0.00 36.85 3.56
899 4519 2.840974 GCTTTAAGCGAGCACAGGA 58.159 52.632 0.00 0.00 39.89 3.86
946 4566 0.889306 AGCACGACAAGAGGGTACTC 59.111 55.000 0.00 0.00 44.31 2.59
948 4568 0.601558 TCAGCACGACAAGAGGGTAC 59.398 55.000 0.00 0.00 0.00 3.34
949 4569 1.476891 GATCAGCACGACAAGAGGGTA 59.523 52.381 0.00 0.00 0.00 3.69
951 4571 0.460987 GGATCAGCACGACAAGAGGG 60.461 60.000 0.00 0.00 0.00 4.30
952 4572 0.247460 TGGATCAGCACGACAAGAGG 59.753 55.000 0.00 0.00 0.00 3.69
954 4574 0.678950 TGTGGATCAGCACGACAAGA 59.321 50.000 0.00 0.00 0.00 3.02
955 4575 1.195448 GTTGTGGATCAGCACGACAAG 59.805 52.381 14.34 0.00 36.85 3.16
956 4576 1.202639 AGTTGTGGATCAGCACGACAA 60.203 47.619 18.97 5.74 37.98 3.18
972 4613 3.132925 CTGTTGGGGAATTTTGCAGTTG 58.867 45.455 0.00 0.00 0.00 3.16
1013 4654 3.330853 GCGCGTCCATGGATCGAC 61.331 66.667 30.98 21.72 0.00 4.20
1014 4655 4.923710 CGCGCGTCCATGGATCGA 62.924 66.667 30.98 5.25 0.00 3.59
1306 4947 1.080722 TAACCGGGCTAGGGTTCCA 59.919 57.895 6.32 0.00 44.25 3.53
1416 5057 3.267860 GGCAGCGATGAAGAGGCG 61.268 66.667 4.02 0.00 0.00 5.52
1418 5059 3.267860 GCGGCAGCGATGAAGAGG 61.268 66.667 4.02 0.00 0.00 3.69
1548 5189 3.435186 GACAAGCTCTTGGGCGCC 61.435 66.667 21.18 21.18 44.45 6.53
1609 5250 2.684655 ATTTGCGCCCCCAGCATT 60.685 55.556 4.18 0.00 44.74 3.56
1632 5273 2.039418 ACAGCTAGGCGATGGATAACA 58.961 47.619 0.00 0.00 32.00 2.41
1659 5300 1.683707 ATCGACCAGAGCTGCCTGA 60.684 57.895 16.44 1.22 36.29 3.86
2109 5750 1.503347 ACCCCAGGAACAAACTCCAAT 59.497 47.619 0.00 0.00 38.02 3.16
2132 5773 0.312102 GCACTGAACCCTTGCAAGAC 59.688 55.000 28.05 15.18 36.22 3.01
2206 5847 7.201956 GCTAGAAGGACTCATCTCCAATTCTAA 60.202 40.741 0.00 0.00 31.50 2.10
2208 5849 5.070313 GCTAGAAGGACTCATCTCCAATTCT 59.930 44.000 0.00 0.00 32.36 2.40
2212 5853 3.713003 TGCTAGAAGGACTCATCTCCAA 58.287 45.455 0.00 0.00 31.94 3.53
2642 6287 5.172687 TGGTGTCATAGCAAGGAATAACA 57.827 39.130 0.00 0.00 33.01 2.41
2734 6379 4.081862 TCTCGGTACCATAAGTCCAAACTG 60.082 45.833 13.54 0.00 35.36 3.16
2735 6380 4.091549 TCTCGGTACCATAAGTCCAAACT 58.908 43.478 13.54 0.00 37.32 2.66
2736 6381 4.430908 CTCTCGGTACCATAAGTCCAAAC 58.569 47.826 13.54 0.00 0.00 2.93
2737 6382 3.118884 GCTCTCGGTACCATAAGTCCAAA 60.119 47.826 13.54 0.00 0.00 3.28
2738 6383 2.429610 GCTCTCGGTACCATAAGTCCAA 59.570 50.000 13.54 0.00 0.00 3.53
2739 6384 2.029623 GCTCTCGGTACCATAAGTCCA 58.970 52.381 13.54 0.00 0.00 4.02
2740 6385 2.308690 AGCTCTCGGTACCATAAGTCC 58.691 52.381 13.54 2.42 0.00 3.85
2741 6386 5.067544 AGTTAAGCTCTCGGTACCATAAGTC 59.932 44.000 13.54 3.44 0.00 3.01
2742 6387 4.954826 AGTTAAGCTCTCGGTACCATAAGT 59.045 41.667 13.54 0.02 0.00 2.24
2743 6388 5.517322 AGTTAAGCTCTCGGTACCATAAG 57.483 43.478 13.54 6.17 0.00 1.73
2744 6389 5.927281 AAGTTAAGCTCTCGGTACCATAA 57.073 39.130 13.54 0.00 0.00 1.90
2745 6390 5.657474 CAAAGTTAAGCTCTCGGTACCATA 58.343 41.667 13.54 0.00 0.00 2.74
2746 6391 4.504858 CAAAGTTAAGCTCTCGGTACCAT 58.495 43.478 13.54 0.00 0.00 3.55
2747 6392 3.863400 GCAAAGTTAAGCTCTCGGTACCA 60.863 47.826 13.54 0.00 0.00 3.25
2748 6393 2.671888 GCAAAGTTAAGCTCTCGGTACC 59.328 50.000 0.16 0.16 0.00 3.34
2749 6394 3.586892 AGCAAAGTTAAGCTCTCGGTAC 58.413 45.455 0.00 0.00 36.00 3.34
2750 6395 3.955650 AGCAAAGTTAAGCTCTCGGTA 57.044 42.857 0.00 0.00 36.00 4.02
2751 6396 2.841442 AGCAAAGTTAAGCTCTCGGT 57.159 45.000 0.00 0.00 36.00 4.69
3119 6764 9.881529 GTTTAAAACCAACGTGATATGAGTAAA 57.118 29.630 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.