Multiple sequence alignment - TraesCS4D01G236100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G236100 chr4D 100.000 6373 0 0 1 6373 397696896 397690524 0.000000e+00 11769.0
1 TraesCS4D01G236100 chr4D 95.860 314 13 0 1 314 498193643 498193330 5.700000e-140 508.0
2 TraesCS4D01G236100 chr4D 90.058 171 17 0 1766 1936 15151224 15151054 8.320000e-54 222.0
3 TraesCS4D01G236100 chr4D 83.478 115 13 6 6180 6293 506288431 506288540 1.130000e-17 102.0
4 TraesCS4D01G236100 chr4D 92.593 54 3 1 6318 6371 352142507 352142559 6.850000e-10 76.8
5 TraesCS4D01G236100 chr4A 93.685 1916 86 10 2999 4903 55397784 55395893 0.000000e+00 2835.0
6 TraesCS4D01G236100 chr4A 90.634 1452 89 18 4901 6319 55395814 55394377 0.000000e+00 1884.0
7 TraesCS4D01G236100 chr4A 93.392 1256 61 7 767 2017 55399096 55397858 0.000000e+00 1840.0
8 TraesCS4D01G236100 chr4A 89.474 171 18 0 1766 1936 586089347 586089517 3.870000e-52 217.0
9 TraesCS4D01G236100 chr4A 92.857 56 2 2 6311 6366 556767940 556767993 5.300000e-11 80.5
10 TraesCS4D01G236100 chr4B 92.107 1457 67 21 4901 6329 489672101 489670665 0.000000e+00 2010.0
11 TraesCS4D01G236100 chr4B 94.453 1298 59 7 3616 4903 489673474 489672180 0.000000e+00 1986.0
12 TraesCS4D01G236100 chr4B 93.981 947 53 3 2027 2973 117279681 117280623 0.000000e+00 1430.0
13 TraesCS4D01G236100 chr4B 95.326 599 19 3 2999 3588 489674324 489673726 0.000000e+00 942.0
14 TraesCS4D01G236100 chr4B 95.583 566 24 1 1075 1639 489675373 489674808 0.000000e+00 905.0
15 TraesCS4D01G236100 chr4B 90.097 515 35 7 315 827 489679497 489678997 0.000000e+00 654.0
16 TraesCS4D01G236100 chr4B 91.811 403 33 0 1617 2019 489674798 489674396 4.310000e-156 562.0
17 TraesCS4D01G236100 chr4B 92.241 232 11 3 818 1049 489675978 489675754 7.970000e-84 322.0
18 TraesCS4D01G236100 chr4B 92.623 122 4 3 3627 3743 489673651 489673530 3.060000e-38 171.0
19 TraesCS4D01G236100 chr7D 99.368 950 6 0 2024 2973 583988226 583987277 0.000000e+00 1722.0
20 TraesCS4D01G236100 chr7D 90.000 60 3 3 6317 6373 627316414 627316473 2.460000e-09 75.0
21 TraesCS4D01G236100 chr2D 98.421 950 15 0 2024 2973 516928891 516927942 0.000000e+00 1672.0
22 TraesCS4D01G236100 chr2D 98.418 948 15 0 2026 2973 435976259 435977206 0.000000e+00 1668.0
23 TraesCS4D01G236100 chr2D 98.097 946 16 1 2028 2973 82568521 82569464 0.000000e+00 1646.0
24 TraesCS4D01G236100 chr2D 87.649 251 31 0 1685 1935 497919511 497919261 6.250000e-75 292.0
25 TraesCS4D01G236100 chr2D 91.111 90 5 3 6185 6274 32344488 32344574 1.120000e-22 119.0
26 TraesCS4D01G236100 chr1D 98.105 950 16 1 2024 2973 487196047 487195100 0.000000e+00 1653.0
27 TraesCS4D01G236100 chr1D 98.000 950 14 2 2024 2973 273918196 273919140 0.000000e+00 1644.0
28 TraesCS4D01G236100 chr1D 98.341 904 10 5 2018 2917 366472877 366473779 0.000000e+00 1581.0
29 TraesCS4D01G236100 chr1D 98.497 599 7 1 2024 2622 53981724 53982320 0.000000e+00 1055.0
30 TraesCS4D01G236100 chr1D 91.358 81 6 1 6184 6264 466407043 466407122 6.760000e-20 110.0
31 TraesCS4D01G236100 chr1D 86.598 97 10 3 6184 6278 30422292 30422387 3.140000e-18 104.0
32 TraesCS4D01G236100 chr1D 94.545 55 2 1 6316 6370 23423848 23423901 4.090000e-12 84.2
33 TraesCS4D01G236100 chr1D 92.593 54 2 2 6320 6373 176742410 176742359 6.850000e-10 76.8
34 TraesCS4D01G236100 chr1D 90.909 55 5 0 6319 6373 402437776 402437830 2.460000e-09 75.0
35 TraesCS4D01G236100 chr3D 95.130 308 9 5 1 305 85594559 85594255 1.240000e-131 481.0
36 TraesCS4D01G236100 chr3D 90.588 85 6 2 6184 6267 529882064 529881981 1.880000e-20 111.0
37 TraesCS4D01G236100 chr3B 94.444 306 15 2 1 305 647826089 647825785 2.690000e-128 470.0
38 TraesCS4D01G236100 chr3B 94.098 305 18 0 1 305 12765411 12765715 1.250000e-126 464.0
39 TraesCS4D01G236100 chr3B 87.368 95 10 2 6184 6278 534159582 534159674 2.430000e-19 108.0
40 TraesCS4D01G236100 chr3B 91.071 56 3 2 6316 6370 828548590 828548644 2.460000e-09 75.0
41 TraesCS4D01G236100 chr1A 93.770 305 19 0 1 305 491376191 491375887 5.820000e-125 459.0
42 TraesCS4D01G236100 chr1A 86.415 265 33 2 1672 1935 578543787 578544049 2.910000e-73 287.0
43 TraesCS4D01G236100 chr1A 92.727 55 3 1 6316 6370 24812677 24812624 1.900000e-10 78.7
44 TraesCS4D01G236100 chr6D 93.182 308 21 0 1 308 119992705 119992398 2.710000e-123 453.0
45 TraesCS4D01G236100 chr6D 91.071 56 3 2 6316 6370 81394287 81394233 2.460000e-09 75.0
46 TraesCS4D01G236100 chr2A 93.443 305 20 0 1 305 138922723 138923027 2.710000e-123 453.0
47 TraesCS4D01G236100 chr2A 85.338 266 36 3 1671 1935 642219235 642218972 8.140000e-69 272.0
48 TraesCS4D01G236100 chr1B 93.443 305 20 0 1 305 453522307 453522611 2.710000e-123 453.0
49 TraesCS4D01G236100 chr1B 93.443 305 20 0 1 305 610971121 610970817 2.710000e-123 453.0
50 TraesCS4D01G236100 chr5A 86.056 251 31 3 1685 1935 454527023 454526777 3.790000e-67 267.0
51 TraesCS4D01G236100 chr5D 83.150 273 29 5 1664 1935 475900184 475900440 3.840000e-57 233.0
52 TraesCS4D01G236100 chr5D 97.059 34 1 0 6266 6299 258988278 258988245 2.480000e-04 58.4
53 TraesCS4D01G236100 chr3A 81.550 271 35 7 1673 1942 23861602 23861346 6.470000e-50 209.0
54 TraesCS4D01G236100 chr7A 89.474 114 12 0 2860 2973 284724637 284724524 1.850000e-30 145.0
55 TraesCS4D01G236100 chr6B 90.217 92 7 2 6184 6275 688620906 688620817 1.120000e-22 119.0
56 TraesCS4D01G236100 chr6B 89.655 87 8 1 6185 6271 528081310 528081395 6.760000e-20 110.0
57 TraesCS4D01G236100 chr2B 91.358 81 6 1 6184 6264 798658558 798658637 6.760000e-20 110.0
58 TraesCS4D01G236100 chrUn 88.764 89 7 3 6184 6272 136395258 136395343 8.740000e-19 106.0
59 TraesCS4D01G236100 chr6A 87.234 94 9 3 6184 6277 513765837 513765927 3.140000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G236100 chr4D 397690524 397696896 6372 True 11769.000000 11769 100.000000 1 6373 1 chr4D.!!$R2 6372
1 TraesCS4D01G236100 chr4A 55394377 55399096 4719 True 2186.333333 2835 92.570333 767 6319 3 chr4A.!!$R1 5552
2 TraesCS4D01G236100 chr4B 117279681 117280623 942 False 1430.000000 1430 93.981000 2027 2973 1 chr4B.!!$F1 946
3 TraesCS4D01G236100 chr4B 489670665 489679497 8832 True 944.000000 2010 93.030125 315 6329 8 chr4B.!!$R1 6014
4 TraesCS4D01G236100 chr7D 583987277 583988226 949 True 1722.000000 1722 99.368000 2024 2973 1 chr7D.!!$R1 949
5 TraesCS4D01G236100 chr2D 516927942 516928891 949 True 1672.000000 1672 98.421000 2024 2973 1 chr2D.!!$R2 949
6 TraesCS4D01G236100 chr2D 435976259 435977206 947 False 1668.000000 1668 98.418000 2026 2973 1 chr2D.!!$F3 947
7 TraesCS4D01G236100 chr2D 82568521 82569464 943 False 1646.000000 1646 98.097000 2028 2973 1 chr2D.!!$F2 945
8 TraesCS4D01G236100 chr1D 487195100 487196047 947 True 1653.000000 1653 98.105000 2024 2973 1 chr1D.!!$R2 949
9 TraesCS4D01G236100 chr1D 273918196 273919140 944 False 1644.000000 1644 98.000000 2024 2973 1 chr1D.!!$F4 949
10 TraesCS4D01G236100 chr1D 366472877 366473779 902 False 1581.000000 1581 98.341000 2018 2917 1 chr1D.!!$F5 899
11 TraesCS4D01G236100 chr1D 53981724 53982320 596 False 1055.000000 1055 98.497000 2024 2622 1 chr1D.!!$F3 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.033894 ACAACCCCAACCAAGACGTT 60.034 50.000 0.0 0.0 0.0 3.99 F
307 308 0.034670 CTTGGGGAGGAGGAAAGCAG 60.035 60.000 0.0 0.0 0.0 4.24 F
309 310 0.118346 TGGGGAGGAGGAAAGCAGTA 59.882 55.000 0.0 0.0 0.0 2.74 F
324 325 0.320374 CAGTAACGCCCACTTCTCCA 59.680 55.000 0.0 0.0 0.0 3.86 F
1235 4621 1.070758 CCTCGTCTTATGGGGATGGTG 59.929 57.143 0.0 0.0 0.0 4.17 F
2165 5593 3.134458 GGGAACAACAGAGACACAAGAG 58.866 50.000 0.0 0.0 0.0 2.85 F
4562 8238 1.067425 CCGATTCCTGTACGACAACCA 60.067 52.381 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 5092 0.416231 TGGGGGCAGAGGTAGTAACT 59.584 55.000 0.00 0.00 0.00 2.24 R
2165 5593 3.322254 TCTCACTCACTTCTGGTTCTTCC 59.678 47.826 0.00 0.00 0.00 3.46 R
2965 6393 4.873259 GCAAACTTAAAAACCAAAGCAGGA 59.127 37.500 0.00 0.00 0.00 3.86 R
2985 6413 6.650807 GCATCTGCCTACAAATATAGTAGCAA 59.349 38.462 8.90 1.29 38.07 3.91 R
2996 6424 5.199723 TCCAATATTGCATCTGCCTACAAA 58.800 37.500 10.11 0.00 41.18 2.83 R
4607 8283 0.037697 TCCTGTACGATGGTGCACAC 60.038 55.000 20.43 7.51 34.89 3.82 R
5499 9272 0.753262 AGTTGGTATAGCGAGGCTGG 59.247 55.000 0.00 0.00 40.10 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.511600 CAGCACCGACCGAATCCC 60.512 66.667 0.00 0.00 0.00 3.85
18 19 3.000819 AGCACCGACCGAATCCCA 61.001 61.111 0.00 0.00 0.00 4.37
19 20 2.189521 GCACCGACCGAATCCCAT 59.810 61.111 0.00 0.00 0.00 4.00
20 21 2.180204 GCACCGACCGAATCCCATG 61.180 63.158 0.00 0.00 0.00 3.66
21 22 1.520192 CACCGACCGAATCCCATGA 59.480 57.895 0.00 0.00 0.00 3.07
22 23 0.107897 CACCGACCGAATCCCATGAA 60.108 55.000 0.00 0.00 0.00 2.57
23 24 0.616371 ACCGACCGAATCCCATGAAA 59.384 50.000 0.00 0.00 0.00 2.69
24 25 1.211949 ACCGACCGAATCCCATGAAAT 59.788 47.619 0.00 0.00 0.00 2.17
25 26 1.873591 CCGACCGAATCCCATGAAATC 59.126 52.381 0.00 0.00 0.00 2.17
26 27 1.873591 CGACCGAATCCCATGAAATCC 59.126 52.381 0.00 0.00 0.00 3.01
27 28 1.873591 GACCGAATCCCATGAAATCCG 59.126 52.381 0.00 0.00 0.00 4.18
28 29 1.488812 ACCGAATCCCATGAAATCCGA 59.511 47.619 0.00 0.00 0.00 4.55
29 30 1.873591 CCGAATCCCATGAAATCCGAC 59.126 52.381 0.00 0.00 0.00 4.79
30 31 1.526887 CGAATCCCATGAAATCCGACG 59.473 52.381 0.00 0.00 0.00 5.12
31 32 1.873591 GAATCCCATGAAATCCGACGG 59.126 52.381 7.84 7.84 0.00 4.79
32 33 1.128200 ATCCCATGAAATCCGACGGA 58.872 50.000 20.85 20.85 35.55 4.69
33 34 0.464036 TCCCATGAAATCCGACGGAG 59.536 55.000 22.99 7.16 34.05 4.63
34 35 0.464036 CCCATGAAATCCGACGGAGA 59.536 55.000 22.99 6.45 34.05 3.71
35 36 1.571919 CCATGAAATCCGACGGAGAC 58.428 55.000 22.99 15.32 34.05 3.36
36 37 1.134818 CCATGAAATCCGACGGAGACA 60.135 52.381 22.99 20.01 34.05 3.41
37 38 1.927174 CATGAAATCCGACGGAGACAC 59.073 52.381 22.99 13.30 34.05 3.67
38 39 0.963225 TGAAATCCGACGGAGACACA 59.037 50.000 22.99 15.58 34.05 3.72
39 40 1.336517 TGAAATCCGACGGAGACACAC 60.337 52.381 22.99 10.34 34.05 3.82
40 41 0.037605 AAATCCGACGGAGACACACC 60.038 55.000 22.99 0.00 34.05 4.16
41 42 0.898789 AATCCGACGGAGACACACCT 60.899 55.000 22.99 0.00 34.05 4.00
42 43 1.313812 ATCCGACGGAGACACACCTC 61.314 60.000 22.99 0.00 34.05 3.85
50 51 2.086054 GAGACACACCTCCACACATC 57.914 55.000 0.00 0.00 0.00 3.06
51 52 0.687354 AGACACACCTCCACACATCC 59.313 55.000 0.00 0.00 0.00 3.51
52 53 0.687354 GACACACCTCCACACATCCT 59.313 55.000 0.00 0.00 0.00 3.24
53 54 0.687354 ACACACCTCCACACATCCTC 59.313 55.000 0.00 0.00 0.00 3.71
54 55 0.036010 CACACCTCCACACATCCTCC 60.036 60.000 0.00 0.00 0.00 4.30
55 56 1.219124 CACCTCCACACATCCTCCG 59.781 63.158 0.00 0.00 0.00 4.63
56 57 1.078528 ACCTCCACACATCCTCCGA 59.921 57.895 0.00 0.00 0.00 4.55
57 58 1.258445 ACCTCCACACATCCTCCGAC 61.258 60.000 0.00 0.00 0.00 4.79
58 59 1.257750 CCTCCACACATCCTCCGACA 61.258 60.000 0.00 0.00 0.00 4.35
59 60 0.608130 CTCCACACATCCTCCGACAA 59.392 55.000 0.00 0.00 0.00 3.18
60 61 0.320374 TCCACACATCCTCCGACAAC 59.680 55.000 0.00 0.00 0.00 3.32
61 62 1.014044 CCACACATCCTCCGACAACG 61.014 60.000 0.00 0.00 39.43 4.10
62 63 1.374252 ACACATCCTCCGACAACGC 60.374 57.895 0.00 0.00 38.29 4.84
63 64 1.079819 CACATCCTCCGACAACGCT 60.080 57.895 0.00 0.00 38.29 5.07
64 65 0.172578 CACATCCTCCGACAACGCTA 59.827 55.000 0.00 0.00 38.29 4.26
65 66 1.112113 ACATCCTCCGACAACGCTAT 58.888 50.000 0.00 0.00 38.29 2.97
66 67 1.480954 ACATCCTCCGACAACGCTATT 59.519 47.619 0.00 0.00 38.29 1.73
67 68 2.128035 CATCCTCCGACAACGCTATTC 58.872 52.381 0.00 0.00 38.29 1.75
68 69 0.099968 TCCTCCGACAACGCTATTCG 59.900 55.000 0.00 0.00 45.38 3.34
69 70 1.480219 CCTCCGACAACGCTATTCGC 61.480 60.000 0.00 0.00 43.23 4.70
70 71 0.800683 CTCCGACAACGCTATTCGCA 60.801 55.000 0.00 0.00 43.23 5.10
71 72 1.074319 TCCGACAACGCTATTCGCAC 61.074 55.000 0.00 0.00 43.23 5.34
72 73 1.343821 CGACAACGCTATTCGCACC 59.656 57.895 0.00 0.00 43.23 5.01
73 74 1.348538 CGACAACGCTATTCGCACCA 61.349 55.000 0.00 0.00 43.23 4.17
74 75 1.006832 GACAACGCTATTCGCACCAT 58.993 50.000 0.00 0.00 43.23 3.55
75 76 1.004927 GACAACGCTATTCGCACCATC 60.005 52.381 0.00 0.00 43.23 3.51
76 77 0.043053 CAACGCTATTCGCACCATCG 60.043 55.000 0.00 0.00 43.23 3.84
77 78 1.151777 AACGCTATTCGCACCATCGG 61.152 55.000 0.00 0.00 43.23 4.18
78 79 2.310233 CGCTATTCGCACCATCGGG 61.310 63.158 0.00 0.00 39.08 5.14
79 80 1.069090 GCTATTCGCACCATCGGGA 59.931 57.895 0.00 0.00 38.92 5.14
80 81 1.222115 GCTATTCGCACCATCGGGAC 61.222 60.000 0.00 0.00 38.92 4.46
93 94 3.945647 GGGACGGGGATAGAACGT 58.054 61.111 0.00 0.00 44.35 3.99
96 97 1.358046 GACGGGGATAGAACGTCGG 59.642 63.158 0.00 0.00 45.82 4.79
97 98 1.077501 ACGGGGATAGAACGTCGGA 60.078 57.895 0.00 0.00 35.77 4.55
98 99 1.099879 ACGGGGATAGAACGTCGGAG 61.100 60.000 0.00 0.00 35.77 4.63
99 100 0.816825 CGGGGATAGAACGTCGGAGA 60.817 60.000 0.00 0.00 0.00 3.71
113 114 3.364889 TCGGAGACATTATTGCTACCG 57.635 47.619 0.00 0.00 40.36 4.02
114 115 2.953648 TCGGAGACATTATTGCTACCGA 59.046 45.455 0.00 0.00 44.37 4.69
115 116 3.004419 TCGGAGACATTATTGCTACCGAG 59.996 47.826 0.00 0.00 42.32 4.63
116 117 3.654414 GGAGACATTATTGCTACCGAGG 58.346 50.000 0.00 0.00 0.00 4.63
117 118 3.555168 GGAGACATTATTGCTACCGAGGG 60.555 52.174 0.00 0.00 0.00 4.30
118 119 3.305720 AGACATTATTGCTACCGAGGGA 58.694 45.455 0.00 0.00 0.00 4.20
119 120 3.069729 AGACATTATTGCTACCGAGGGAC 59.930 47.826 0.00 0.00 0.00 4.46
120 121 2.769663 ACATTATTGCTACCGAGGGACA 59.230 45.455 0.00 0.00 0.00 4.02
121 122 2.973694 TTATTGCTACCGAGGGACAC 57.026 50.000 0.00 0.00 0.00 3.67
122 123 1.117150 TATTGCTACCGAGGGACACC 58.883 55.000 0.00 0.00 0.00 4.16
123 124 1.956629 ATTGCTACCGAGGGACACCG 61.957 60.000 0.00 0.00 43.47 4.94
124 125 4.509737 GCTACCGAGGGACACCGC 62.510 72.222 0.00 0.00 43.47 5.68
125 126 3.834799 CTACCGAGGGACACCGCC 61.835 72.222 0.00 0.00 43.47 6.13
144 145 3.601685 CCGCCACACAACCCCAAC 61.602 66.667 0.00 0.00 0.00 3.77
145 146 3.601685 CGCCACACAACCCCAACC 61.602 66.667 0.00 0.00 0.00 3.77
146 147 2.443016 GCCACACAACCCCAACCA 60.443 61.111 0.00 0.00 0.00 3.67
147 148 2.060980 GCCACACAACCCCAACCAA 61.061 57.895 0.00 0.00 0.00 3.67
148 149 2.026945 GCCACACAACCCCAACCAAG 62.027 60.000 0.00 0.00 0.00 3.61
149 150 0.396417 CCACACAACCCCAACCAAGA 60.396 55.000 0.00 0.00 0.00 3.02
150 151 0.744281 CACACAACCCCAACCAAGAC 59.256 55.000 0.00 0.00 0.00 3.01
151 152 0.750182 ACACAACCCCAACCAAGACG 60.750 55.000 0.00 0.00 0.00 4.18
152 153 0.750182 CACAACCCCAACCAAGACGT 60.750 55.000 0.00 0.00 0.00 4.34
153 154 0.033894 ACAACCCCAACCAAGACGTT 60.034 50.000 0.00 0.00 0.00 3.99
154 155 0.666374 CAACCCCAACCAAGACGTTC 59.334 55.000 0.00 0.00 0.00 3.95
155 156 0.256464 AACCCCAACCAAGACGTTCA 59.744 50.000 0.00 0.00 0.00 3.18
156 157 0.256464 ACCCCAACCAAGACGTTCAA 59.744 50.000 0.00 0.00 0.00 2.69
157 158 0.666374 CCCCAACCAAGACGTTCAAC 59.334 55.000 0.00 0.00 0.00 3.18
158 159 0.666374 CCCAACCAAGACGTTCAACC 59.334 55.000 0.00 0.00 0.00 3.77
159 160 1.675552 CCAACCAAGACGTTCAACCT 58.324 50.000 0.00 0.00 0.00 3.50
160 161 2.485835 CCCAACCAAGACGTTCAACCTA 60.486 50.000 0.00 0.00 0.00 3.08
161 162 2.806244 CCAACCAAGACGTTCAACCTAG 59.194 50.000 0.00 0.00 0.00 3.02
162 163 2.165319 ACCAAGACGTTCAACCTAGC 57.835 50.000 0.00 0.00 0.00 3.42
163 164 1.414919 ACCAAGACGTTCAACCTAGCA 59.585 47.619 0.00 0.00 0.00 3.49
164 165 2.158871 ACCAAGACGTTCAACCTAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
165 166 2.875933 CCAAGACGTTCAACCTAGCAAA 59.124 45.455 0.00 0.00 0.00 3.68
166 167 3.314080 CCAAGACGTTCAACCTAGCAAAA 59.686 43.478 0.00 0.00 0.00 2.44
167 168 4.201970 CCAAGACGTTCAACCTAGCAAAAA 60.202 41.667 0.00 0.00 0.00 1.94
168 169 4.547406 AGACGTTCAACCTAGCAAAAAC 57.453 40.909 0.00 0.00 0.00 2.43
169 170 3.001939 AGACGTTCAACCTAGCAAAAACG 59.998 43.478 13.59 13.59 43.56 3.60
170 171 2.937799 ACGTTCAACCTAGCAAAAACGA 59.062 40.909 18.98 0.00 41.28 3.85
171 172 3.001939 ACGTTCAACCTAGCAAAAACGAG 59.998 43.478 18.98 0.45 41.28 4.18
172 173 3.246699 CGTTCAACCTAGCAAAAACGAGA 59.753 43.478 11.07 0.00 41.28 4.04
173 174 4.260456 CGTTCAACCTAGCAAAAACGAGAA 60.260 41.667 11.07 0.00 41.28 2.87
174 175 4.806342 TCAACCTAGCAAAAACGAGAAC 57.194 40.909 0.00 0.00 0.00 3.01
175 176 3.246699 TCAACCTAGCAAAAACGAGAACG 59.753 43.478 0.00 0.00 45.75 3.95
176 177 2.140717 ACCTAGCAAAAACGAGAACGG 58.859 47.619 0.00 0.00 44.46 4.44
177 178 1.463444 CCTAGCAAAAACGAGAACGGG 59.537 52.381 0.00 0.00 44.46 5.28
178 179 2.140717 CTAGCAAAAACGAGAACGGGT 58.859 47.619 0.00 0.00 44.46 5.28
179 180 0.942252 AGCAAAAACGAGAACGGGTC 59.058 50.000 0.00 0.00 44.46 4.46
180 181 0.040692 GCAAAAACGAGAACGGGTCC 60.041 55.000 0.00 0.00 44.46 4.46
181 182 0.589708 CAAAAACGAGAACGGGTCCC 59.410 55.000 0.00 0.00 44.46 4.46
182 183 0.535780 AAAAACGAGAACGGGTCCCC 60.536 55.000 1.00 0.00 44.46 4.81
183 184 1.413256 AAAACGAGAACGGGTCCCCT 61.413 55.000 1.00 0.00 44.46 4.79
184 185 1.824224 AAACGAGAACGGGTCCCCTC 61.824 60.000 1.00 2.32 44.46 4.30
185 186 3.459063 CGAGAACGGGTCCCCTCC 61.459 72.222 1.00 0.00 35.72 4.30
186 187 3.082055 GAGAACGGGTCCCCTCCC 61.082 72.222 1.00 0.00 43.78 4.30
211 212 3.930012 GGGGGCCGAGATTCTCCG 61.930 72.222 8.09 3.05 0.00 4.63
212 213 4.610714 GGGGCCGAGATTCTCCGC 62.611 72.222 15.90 15.90 34.83 5.54
213 214 3.849951 GGGCCGAGATTCTCCGCA 61.850 66.667 22.67 0.00 36.68 5.69
214 215 2.586357 GGCCGAGATTCTCCGCAC 60.586 66.667 22.67 12.11 36.68 5.34
215 216 2.586357 GCCGAGATTCTCCGCACC 60.586 66.667 18.34 0.00 35.45 5.01
216 217 3.082579 GCCGAGATTCTCCGCACCT 62.083 63.158 18.34 0.00 35.45 4.00
217 218 1.066587 CCGAGATTCTCCGCACCTC 59.933 63.158 8.09 0.00 0.00 3.85
218 219 1.066587 CGAGATTCTCCGCACCTCC 59.933 63.158 8.09 0.00 0.00 4.30
219 220 1.667154 CGAGATTCTCCGCACCTCCA 61.667 60.000 8.09 0.00 0.00 3.86
220 221 0.179097 GAGATTCTCCGCACCTCCAC 60.179 60.000 1.97 0.00 0.00 4.02
221 222 0.904865 AGATTCTCCGCACCTCCACA 60.905 55.000 0.00 0.00 0.00 4.17
222 223 0.460987 GATTCTCCGCACCTCCACAG 60.461 60.000 0.00 0.00 0.00 3.66
223 224 1.903877 ATTCTCCGCACCTCCACAGG 61.904 60.000 0.00 0.00 46.87 4.00
224 225 4.767255 CTCCGCACCTCCACAGGC 62.767 72.222 0.00 0.00 45.05 4.85
227 228 4.641645 CGCACCTCCACAGGCCAA 62.642 66.667 5.01 0.00 45.05 4.52
228 229 2.203480 GCACCTCCACAGGCCAAA 60.203 61.111 5.01 0.00 45.05 3.28
229 230 2.270986 GCACCTCCACAGGCCAAAG 61.271 63.158 5.01 0.00 45.05 2.77
230 231 1.604593 CACCTCCACAGGCCAAAGG 60.605 63.158 5.01 6.43 45.05 3.11
278 279 3.839432 GCCGACGGGAGGAGGAAG 61.839 72.222 17.22 0.00 34.06 3.46
279 280 3.148279 CCGACGGGAGGAGGAAGG 61.148 72.222 5.81 0.00 34.06 3.46
280 281 3.148279 CGACGGGAGGAGGAAGGG 61.148 72.222 0.00 0.00 0.00 3.95
281 282 2.764547 GACGGGAGGAGGAAGGGG 60.765 72.222 0.00 0.00 0.00 4.79
282 283 3.281787 ACGGGAGGAGGAAGGGGA 61.282 66.667 0.00 0.00 0.00 4.81
283 284 2.764547 CGGGAGGAGGAAGGGGAC 60.765 72.222 0.00 0.00 0.00 4.46
295 296 3.292264 AGGGGACTTTTCTTGGGGA 57.708 52.632 0.00 0.00 37.44 4.81
296 297 1.076438 AGGGGACTTTTCTTGGGGAG 58.924 55.000 0.00 0.00 37.44 4.30
297 298 0.039764 GGGGACTTTTCTTGGGGAGG 59.960 60.000 0.00 0.00 0.00 4.30
298 299 1.073098 GGGACTTTTCTTGGGGAGGA 58.927 55.000 0.00 0.00 0.00 3.71
299 300 1.004862 GGGACTTTTCTTGGGGAGGAG 59.995 57.143 0.00 0.00 0.00 3.69
300 301 1.004862 GGACTTTTCTTGGGGAGGAGG 59.995 57.143 0.00 0.00 0.00 4.30
301 302 1.985895 GACTTTTCTTGGGGAGGAGGA 59.014 52.381 0.00 0.00 0.00 3.71
302 303 2.375509 GACTTTTCTTGGGGAGGAGGAA 59.624 50.000 0.00 0.00 0.00 3.36
303 304 2.789399 ACTTTTCTTGGGGAGGAGGAAA 59.211 45.455 0.00 0.00 0.00 3.13
304 305 3.181428 ACTTTTCTTGGGGAGGAGGAAAG 60.181 47.826 3.26 3.26 0.00 2.62
305 306 0.698818 TTCTTGGGGAGGAGGAAAGC 59.301 55.000 0.00 0.00 0.00 3.51
306 307 0.475632 TCTTGGGGAGGAGGAAAGCA 60.476 55.000 0.00 0.00 0.00 3.91
307 308 0.034670 CTTGGGGAGGAGGAAAGCAG 60.035 60.000 0.00 0.00 0.00 4.24
308 309 0.772124 TTGGGGAGGAGGAAAGCAGT 60.772 55.000 0.00 0.00 0.00 4.40
309 310 0.118346 TGGGGAGGAGGAAAGCAGTA 59.882 55.000 0.00 0.00 0.00 2.74
310 311 1.286248 GGGGAGGAGGAAAGCAGTAA 58.714 55.000 0.00 0.00 0.00 2.24
311 312 1.065345 GGGGAGGAGGAAAGCAGTAAC 60.065 57.143 0.00 0.00 0.00 2.50
312 313 1.405661 GGGAGGAGGAAAGCAGTAACG 60.406 57.143 0.00 0.00 0.00 3.18
313 314 1.360820 GAGGAGGAAAGCAGTAACGC 58.639 55.000 0.00 0.00 0.00 4.84
324 325 0.320374 CAGTAACGCCCACTTCTCCA 59.680 55.000 0.00 0.00 0.00 3.86
360 361 5.897377 AAACCTTTGAATCCAAGATACCG 57.103 39.130 0.00 0.00 33.23 4.02
370 371 6.984474 TGAATCCAAGATACCGTAAACATCTC 59.016 38.462 0.00 0.00 0.00 2.75
385 386 8.230486 CGTAAACATCTCAAGAAAAAGTAGCAT 58.770 33.333 0.00 0.00 0.00 3.79
388 389 6.166279 ACATCTCAAGAAAAAGTAGCATCGA 58.834 36.000 0.00 0.00 0.00 3.59
404 406 8.467598 AGTAGCATCGAAAGTTGAACTAGATTA 58.532 33.333 0.00 0.00 31.23 1.75
435 437 6.042897 ACATGTCTATAGGTTTAACTAGCCCC 59.957 42.308 0.00 0.00 0.00 5.80
437 439 5.965705 TGTCTATAGGTTTAACTAGCCCCAA 59.034 40.000 0.00 0.00 0.00 4.12
453 455 3.636764 GCCCCAAGAGTTCAGAAGAAAAA 59.363 43.478 0.00 0.00 35.08 1.94
463 465 9.007901 AGAGTTCAGAAGAAAAACATGGAATAG 57.992 33.333 0.00 0.00 35.08 1.73
464 466 8.115490 AGTTCAGAAGAAAAACATGGAATAGG 57.885 34.615 0.00 0.00 35.08 2.57
487 489 5.047092 GGATTTCTTTTCATGGAAGCTGGAA 60.047 40.000 0.00 0.00 0.00 3.53
534 536 4.941263 ACTGCGGCTGACTTTATTGAATAA 59.059 37.500 14.07 0.00 0.00 1.40
609 611 2.679355 TGAAAATGTTCGCGTTCCTG 57.321 45.000 5.77 0.00 36.46 3.86
794 796 3.001514 CTGCTACATGGGCTGGGT 58.998 61.111 12.78 0.00 0.00 4.51
879 3909 4.227754 TCCCTTTCCCCACGATAATAAACA 59.772 41.667 0.00 0.00 0.00 2.83
955 3986 2.095053 GCAAGAAAGACGGAAGATCTGC 59.905 50.000 0.00 0.00 0.00 4.26
956 3987 3.594134 CAAGAAAGACGGAAGATCTGCT 58.406 45.455 0.00 0.00 0.00 4.24
957 3988 3.518634 AGAAAGACGGAAGATCTGCTC 57.481 47.619 0.00 0.00 0.00 4.26
971 4002 2.183679 TCTGCTCCTCCTCTTTCCTTC 58.816 52.381 0.00 0.00 0.00 3.46
1208 4594 7.882179 ACCAATTCAAATTACTTGTAGGTGAC 58.118 34.615 0.00 0.00 36.34 3.67
1210 4596 8.237267 CCAATTCAAATTACTTGTAGGTGACTC 58.763 37.037 0.00 0.00 36.36 3.36
1235 4621 1.070758 CCTCGTCTTATGGGGATGGTG 59.929 57.143 0.00 0.00 0.00 4.17
1395 4781 7.372714 GCGAAAGTAATTTCCTTTCCCTTTTA 58.627 34.615 17.71 0.00 43.04 1.52
1448 4834 7.173218 TCCTTGTAGATTTGTTCTAGCTGTTTG 59.827 37.037 0.00 0.00 37.62 2.93
1456 4842 5.043737 TGTTCTAGCTGTTTGGTTTAGGT 57.956 39.130 0.00 0.00 0.00 3.08
1464 4850 5.014860 AGCTGTTTGGTTTAGGTATTAGGGT 59.985 40.000 0.00 0.00 0.00 4.34
1853 5276 8.839947 TCAATATTGCAGTTGTCGATATTTTG 57.160 30.769 10.76 0.00 31.46 2.44
2002 5425 8.616076 GGACCTCATTTGTATATTTCTTGTCAG 58.384 37.037 0.00 0.00 0.00 3.51
2019 5442 8.037382 TCTTGTCAGCAGAAAAATAAGAGATG 57.963 34.615 0.00 0.00 0.00 2.90
2020 5443 7.663081 TCTTGTCAGCAGAAAAATAAGAGATGT 59.337 33.333 0.00 0.00 0.00 3.06
2165 5593 3.134458 GGGAACAACAGAGACACAAGAG 58.866 50.000 0.00 0.00 0.00 2.85
2985 6413 5.660460 CAGTCCTGCTTTGGTTTTTAAGTT 58.340 37.500 0.00 0.00 0.00 2.66
2995 6423 9.902196 GCTTTGGTTTTTAAGTTTGCTACTATA 57.098 29.630 0.00 0.00 35.54 1.31
3181 6620 5.351465 ACGATGTTAGTTTCATGTGGTGATC 59.649 40.000 0.00 0.00 36.54 2.92
3261 6700 7.442666 GGAGTGATCCTGGAAACTGTTATTATC 59.557 40.741 17.32 0.21 0.00 1.75
3269 6708 8.739039 CCTGGAAACTGTTATTATCATTTGACA 58.261 33.333 0.00 0.00 0.00 3.58
3292 6731 6.978659 ACAGTAGTTACATGATTATGTCACCG 59.021 38.462 6.36 0.00 44.00 4.94
3401 6841 6.161381 TCTTGATCACCGTTTAGTTTAGGAC 58.839 40.000 0.00 0.00 0.00 3.85
3402 6842 4.824289 TGATCACCGTTTAGTTTAGGACC 58.176 43.478 0.00 0.00 0.00 4.46
3406 6854 5.324409 TCACCGTTTAGTTTAGGACCTAGA 58.676 41.667 0.48 0.00 0.00 2.43
3418 6866 9.105844 AGTTTAGGACCTAGACATATATGCAAT 57.894 33.333 21.06 1.75 0.00 3.56
3477 6925 4.225942 TGAGAGGGTGCTCAGACAATAATT 59.774 41.667 0.00 0.00 39.84 1.40
3623 7295 5.427378 GCATAAATTGGGTATTTGCTTGGT 58.573 37.500 0.00 0.00 37.07 3.67
3736 7411 6.240894 TGTTTGGATCATTGACTAGAAGCTT 58.759 36.000 0.00 0.00 0.00 3.74
3763 7438 7.416154 TTTTGTGTGCTCATTACTACTGTAC 57.584 36.000 0.00 0.00 0.00 2.90
3984 7659 5.689961 CCCTTGTTCTGGTATTTTGTTTTCG 59.310 40.000 0.00 0.00 0.00 3.46
3989 7664 6.035112 TGTTCTGGTATTTTGTTTTCGTTTGC 59.965 34.615 0.00 0.00 0.00 3.68
4098 7773 3.490759 GTGTGTCGGCGCATGAGG 61.491 66.667 6.52 0.00 37.46 3.86
4117 7792 9.455847 GCATGAGGTCAAATTATTTTAGATCAC 57.544 33.333 0.00 0.00 0.00 3.06
4390 8066 9.649167 ATTGAATTTTGGTCTTTGATTCAGATC 57.351 29.630 0.00 0.00 37.82 2.75
4428 8104 5.102953 TGATCTGGTGTAATGCTAGCTTT 57.897 39.130 17.23 18.04 0.00 3.51
4429 8105 4.877823 TGATCTGGTGTAATGCTAGCTTTG 59.122 41.667 22.43 7.69 0.00 2.77
4482 8158 7.335924 TCCCAGTAAACTGATAAATAACAGTGC 59.664 37.037 11.69 0.23 46.59 4.40
4535 8211 3.946305 CTCTGCGCGCACGACACTA 62.946 63.158 33.09 6.48 43.93 2.74
4562 8238 1.067425 CCGATTCCTGTACGACAACCA 60.067 52.381 0.00 0.00 0.00 3.67
4607 8283 6.734104 TTTTTCAAAGTGTGAATGGTTTGG 57.266 33.333 0.00 0.00 45.71 3.28
4686 8362 7.178983 TCTCTGAAAAATTGATGGGCTAACATT 59.821 33.333 0.00 0.00 0.00 2.71
4809 8492 8.109634 ACATGGTTTAGTTCAGAATCCTTATGT 58.890 33.333 0.00 0.00 0.00 2.29
5001 8765 5.412286 GCATTTTAATTTTGGCATGTCCTGT 59.588 36.000 0.00 0.00 35.26 4.00
5036 8800 6.095377 CCTGGTTTATGAAGAAATGAAGTGC 58.905 40.000 0.00 0.00 0.00 4.40
5056 8820 6.357367 AGTGCTAATTTCGAACCATATCCTT 58.643 36.000 0.00 0.00 0.00 3.36
5057 8821 6.483640 AGTGCTAATTTCGAACCATATCCTTC 59.516 38.462 0.00 0.00 0.00 3.46
5260 9024 5.739752 TGTCTGAGACAAATGAAACAGTG 57.260 39.130 13.74 0.00 39.78 3.66
5278 9042 5.308014 ACAGTGAAACAGCATCTCAACATA 58.692 37.500 0.00 0.00 41.43 2.29
5318 9082 5.061179 GGTACAATTGATAGCGTAATGGGT 58.939 41.667 13.59 0.00 0.00 4.51
5401 9165 1.192146 TCCGAACTAAGCTGGCTGGT 61.192 55.000 0.00 0.00 0.00 4.00
5441 9207 5.643379 TGGAAAATCACTATTCTTGTGCC 57.357 39.130 0.00 0.00 35.58 5.01
5467 9233 6.715347 ACAAAACTAAGCACTCATCCTTTT 57.285 33.333 0.00 0.00 0.00 2.27
5499 9272 0.100682 TGGACTCTAATCAGCGTCGC 59.899 55.000 9.80 9.80 37.38 5.19
5541 9314 8.000780 ACTTTATTAGGCTGAATTTTAGCAGG 57.999 34.615 14.29 0.00 42.88 4.85
5603 9376 3.826729 GCCAGTAACATTTTTGGAGACCT 59.173 43.478 0.00 0.00 32.34 3.85
5906 9680 6.044682 GGCTCCATGAAATAAATGTGGAAAG 58.955 40.000 0.00 0.00 38.41 2.62
5908 9682 6.976925 GCTCCATGAAATAAATGTGGAAAGAG 59.023 38.462 0.00 0.00 38.41 2.85
5948 9722 1.001641 CCTGGCTTCTGGGGTTCTG 60.002 63.158 0.00 0.00 0.00 3.02
5968 9742 8.125448 GGTTCTGTTTGCTTGATCTATGAATAC 58.875 37.037 0.00 0.00 0.00 1.89
6091 9904 5.333875 GGTTGTTGAGTCTGACGAAATTACC 60.334 44.000 1.52 8.54 0.00 2.85
6103 9916 7.013559 TCTGACGAAATTACCGATAATACTCCA 59.986 37.037 7.10 0.00 30.42 3.86
6106 9919 7.095270 ACGAAATTACCGATAATACTCCATCC 58.905 38.462 7.10 0.00 30.42 3.51
6165 9983 2.526888 TCAGTGACGGAGGGAGTATT 57.473 50.000 0.00 0.00 0.00 1.89
6243 10062 8.083828 ACTACCTTGACAGTTGATGAATAGAT 57.916 34.615 0.00 0.00 0.00 1.98
6246 10065 5.464722 CCTTGACAGTTGATGAATAGATCGG 59.535 44.000 0.00 0.00 0.00 4.18
6249 10068 6.639563 TGACAGTTGATGAATAGATCGGAAA 58.360 36.000 0.00 0.00 0.00 3.13
6255 10074 9.177608 AGTTGATGAATAGATCGGAAATTTTCA 57.822 29.630 11.09 0.00 0.00 2.69
6259 10078 7.332213 TGAATAGATCGGAAATTTTCATGCA 57.668 32.000 11.09 0.00 0.00 3.96
6299 10119 3.627577 CCCTCCGATCCAAAATAAGTGTG 59.372 47.826 0.00 0.00 0.00 3.82
6326 10146 8.380099 TGGAGTACTATTATGGTGTCAAAAACT 58.620 33.333 0.00 0.00 0.00 2.66
6332 10152 9.227777 ACTATTATGGTGTCAAAAACTTACTCC 57.772 33.333 0.00 0.00 0.00 3.85
6333 10153 6.887626 TTATGGTGTCAAAAACTTACTCCC 57.112 37.500 0.00 0.00 0.00 4.30
6334 10154 4.513406 TGGTGTCAAAAACTTACTCCCT 57.487 40.909 0.00 0.00 0.00 4.20
6335 10155 4.457466 TGGTGTCAAAAACTTACTCCCTC 58.543 43.478 0.00 0.00 0.00 4.30
6336 10156 3.819337 GGTGTCAAAAACTTACTCCCTCC 59.181 47.826 0.00 0.00 0.00 4.30
6337 10157 3.497262 GTGTCAAAAACTTACTCCCTCCG 59.503 47.826 0.00 0.00 0.00 4.63
6338 10158 3.135167 TGTCAAAAACTTACTCCCTCCGT 59.865 43.478 0.00 0.00 0.00 4.69
6339 10159 3.744942 GTCAAAAACTTACTCCCTCCGTC 59.255 47.826 0.00 0.00 0.00 4.79
6340 10160 3.072211 CAAAAACTTACTCCCTCCGTCC 58.928 50.000 0.00 0.00 0.00 4.79
6341 10161 1.273759 AAACTTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
6342 10162 0.115745 AACTTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
6343 10163 0.338814 ACTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
6344 10164 1.572415 ACTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
6345 10165 2.023695 ACTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
6346 10166 3.240302 CTTACTCCCTCCGTCCCATAAT 58.760 50.000 0.00 0.00 0.00 1.28
6347 10167 4.140853 ACTTACTCCCTCCGTCCCATAATA 60.141 45.833 0.00 0.00 0.00 0.98
6348 10168 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6349 10169 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6350 10170 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6351 10171 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6352 10172 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6353 10173 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
6354 10174 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
6355 10175 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
6356 10176 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
6357 10177 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
6358 10178 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
6359 10179 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
6360 10180 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
6361 10181 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
6362 10182 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
6363 10183 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
6364 10184 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
6365 10185 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
6366 10186 7.582679 CCATAATATAAGAGCGTTTTTGACACG 59.417 37.037 0.00 0.00 40.75 4.49
6367 10187 6.476243 AATATAAGAGCGTTTTTGACACGT 57.524 33.333 0.00 0.00 39.92 4.49
6368 10188 7.585286 AATATAAGAGCGTTTTTGACACGTA 57.415 32.000 0.00 0.00 39.92 3.57
6369 10189 5.910637 ATAAGAGCGTTTTTGACACGTAA 57.089 34.783 0.00 0.00 39.92 3.18
6370 10190 4.603231 AAGAGCGTTTTTGACACGTAAA 57.397 36.364 0.00 0.00 39.92 2.01
6371 10191 4.603231 AGAGCGTTTTTGACACGTAAAA 57.397 36.364 0.00 0.00 39.92 1.52
6372 10192 4.972201 AGAGCGTTTTTGACACGTAAAAA 58.028 34.783 3.85 3.85 39.92 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.511600 GGGATTCGGTCGGTGCTG 60.512 66.667 0.00 0.00 0.00 4.41
1 2 2.367202 ATGGGATTCGGTCGGTGCT 61.367 57.895 0.00 0.00 0.00 4.40
3 4 0.107897 TTCATGGGATTCGGTCGGTG 60.108 55.000 0.00 0.00 0.00 4.94
4 5 0.616371 TTTCATGGGATTCGGTCGGT 59.384 50.000 0.00 0.00 0.00 4.69
5 6 1.873591 GATTTCATGGGATTCGGTCGG 59.126 52.381 0.00 0.00 0.00 4.79
6 7 1.873591 GGATTTCATGGGATTCGGTCG 59.126 52.381 0.00 0.00 0.00 4.79
7 8 1.873591 CGGATTTCATGGGATTCGGTC 59.126 52.381 0.00 0.00 0.00 4.79
8 9 1.488812 TCGGATTTCATGGGATTCGGT 59.511 47.619 9.17 0.00 0.00 4.69
9 10 1.873591 GTCGGATTTCATGGGATTCGG 59.126 52.381 9.17 3.12 0.00 4.30
10 11 1.526887 CGTCGGATTTCATGGGATTCG 59.473 52.381 0.00 0.00 0.00 3.34
11 12 1.873591 CCGTCGGATTTCATGGGATTC 59.126 52.381 4.91 0.00 0.00 2.52
12 13 1.488812 TCCGTCGGATTTCATGGGATT 59.511 47.619 10.71 0.00 0.00 3.01
13 14 1.070758 CTCCGTCGGATTTCATGGGAT 59.929 52.381 15.81 0.00 0.00 3.85
14 15 0.464036 CTCCGTCGGATTTCATGGGA 59.536 55.000 15.81 0.00 0.00 4.37
15 16 0.464036 TCTCCGTCGGATTTCATGGG 59.536 55.000 15.81 0.00 0.00 4.00
16 17 1.134818 TGTCTCCGTCGGATTTCATGG 60.135 52.381 15.81 0.82 0.00 3.66
17 18 1.927174 GTGTCTCCGTCGGATTTCATG 59.073 52.381 15.81 1.63 0.00 3.07
18 19 1.548719 TGTGTCTCCGTCGGATTTCAT 59.451 47.619 15.81 0.00 0.00 2.57
19 20 0.963225 TGTGTCTCCGTCGGATTTCA 59.037 50.000 15.81 11.29 0.00 2.69
20 21 1.347320 GTGTGTCTCCGTCGGATTTC 58.653 55.000 15.81 8.79 0.00 2.17
21 22 0.037605 GGTGTGTCTCCGTCGGATTT 60.038 55.000 15.81 0.00 0.00 2.17
22 23 0.898789 AGGTGTGTCTCCGTCGGATT 60.899 55.000 15.81 0.00 0.00 3.01
23 24 1.304217 AGGTGTGTCTCCGTCGGAT 60.304 57.895 15.81 0.00 0.00 4.18
24 25 1.970114 GAGGTGTGTCTCCGTCGGA 60.970 63.158 14.54 14.54 0.00 4.55
25 26 2.567049 GAGGTGTGTCTCCGTCGG 59.433 66.667 4.39 4.39 0.00 4.79
26 27 2.567049 GGAGGTGTGTCTCCGTCG 59.433 66.667 0.00 0.00 43.19 5.12
31 32 1.338200 GGATGTGTGGAGGTGTGTCTC 60.338 57.143 0.00 0.00 0.00 3.36
32 33 0.687354 GGATGTGTGGAGGTGTGTCT 59.313 55.000 0.00 0.00 0.00 3.41
33 34 0.687354 AGGATGTGTGGAGGTGTGTC 59.313 55.000 0.00 0.00 0.00 3.67
34 35 0.687354 GAGGATGTGTGGAGGTGTGT 59.313 55.000 0.00 0.00 0.00 3.72
35 36 0.036010 GGAGGATGTGTGGAGGTGTG 60.036 60.000 0.00 0.00 0.00 3.82
36 37 1.544825 CGGAGGATGTGTGGAGGTGT 61.545 60.000 0.00 0.00 0.00 4.16
37 38 1.219124 CGGAGGATGTGTGGAGGTG 59.781 63.158 0.00 0.00 0.00 4.00
38 39 1.078528 TCGGAGGATGTGTGGAGGT 59.921 57.895 0.00 0.00 0.00 3.85
39 40 1.257750 TGTCGGAGGATGTGTGGAGG 61.258 60.000 0.00 0.00 0.00 4.30
40 41 0.608130 TTGTCGGAGGATGTGTGGAG 59.392 55.000 0.00 0.00 0.00 3.86
41 42 0.320374 GTTGTCGGAGGATGTGTGGA 59.680 55.000 0.00 0.00 0.00 4.02
42 43 1.014044 CGTTGTCGGAGGATGTGTGG 61.014 60.000 0.00 0.00 0.00 4.17
43 44 1.626654 GCGTTGTCGGAGGATGTGTG 61.627 60.000 0.00 0.00 37.56 3.82
44 45 1.374252 GCGTTGTCGGAGGATGTGT 60.374 57.895 0.00 0.00 37.56 3.72
45 46 0.172578 TAGCGTTGTCGGAGGATGTG 59.827 55.000 0.00 0.00 37.56 3.21
46 47 1.112113 ATAGCGTTGTCGGAGGATGT 58.888 50.000 0.00 0.00 37.56 3.06
47 48 2.128035 GAATAGCGTTGTCGGAGGATG 58.872 52.381 0.00 0.00 37.56 3.51
48 49 1.269102 CGAATAGCGTTGTCGGAGGAT 60.269 52.381 0.24 0.00 37.56 3.24
49 50 0.099968 CGAATAGCGTTGTCGGAGGA 59.900 55.000 0.24 0.00 37.56 3.71
50 51 1.480219 GCGAATAGCGTTGTCGGAGG 61.480 60.000 8.74 0.00 43.41 4.30
51 52 1.917921 GCGAATAGCGTTGTCGGAG 59.082 57.895 8.74 0.00 43.41 4.63
52 53 4.082192 GCGAATAGCGTTGTCGGA 57.918 55.556 8.74 0.00 43.41 4.55
62 63 0.939577 CGTCCCGATGGTGCGAATAG 60.940 60.000 0.00 0.00 34.66 1.73
63 64 1.066752 CGTCCCGATGGTGCGAATA 59.933 57.895 0.00 0.00 34.66 1.75
64 65 2.202878 CGTCCCGATGGTGCGAAT 60.203 61.111 0.00 0.00 34.66 3.34
65 66 4.444838 CCGTCCCGATGGTGCGAA 62.445 66.667 0.00 0.00 34.66 4.70
69 70 1.816863 CTATCCCCGTCCCGATGGTG 61.817 65.000 2.35 0.00 35.70 4.17
70 71 1.533273 CTATCCCCGTCCCGATGGT 60.533 63.158 2.35 0.00 35.70 3.55
71 72 0.830444 TTCTATCCCCGTCCCGATGG 60.830 60.000 0.00 0.00 37.23 3.51
72 73 0.317479 GTTCTATCCCCGTCCCGATG 59.683 60.000 0.00 0.00 0.00 3.84
73 74 1.177256 CGTTCTATCCCCGTCCCGAT 61.177 60.000 0.00 0.00 0.00 4.18
74 75 1.825191 CGTTCTATCCCCGTCCCGA 60.825 63.158 0.00 0.00 0.00 5.14
75 76 2.068277 GACGTTCTATCCCCGTCCCG 62.068 65.000 0.00 0.00 43.77 5.14
76 77 1.738432 GACGTTCTATCCCCGTCCC 59.262 63.158 0.00 0.00 43.77 4.46
77 78 1.358046 CGACGTTCTATCCCCGTCC 59.642 63.158 5.91 0.00 46.03 4.79
78 79 1.097547 TCCGACGTTCTATCCCCGTC 61.098 60.000 0.00 0.00 45.49 4.79
79 80 1.077501 TCCGACGTTCTATCCCCGT 60.078 57.895 0.00 0.00 37.56 5.28
80 81 0.816825 TCTCCGACGTTCTATCCCCG 60.817 60.000 0.00 0.00 0.00 5.73
81 82 0.667453 GTCTCCGACGTTCTATCCCC 59.333 60.000 0.00 0.00 0.00 4.81
82 83 1.386533 TGTCTCCGACGTTCTATCCC 58.613 55.000 0.00 0.00 34.95 3.85
83 84 3.712091 AATGTCTCCGACGTTCTATCC 57.288 47.619 0.00 0.00 37.20 2.59
84 85 5.117287 GCAATAATGTCTCCGACGTTCTATC 59.883 44.000 4.85 0.00 40.40 2.08
85 86 4.982916 GCAATAATGTCTCCGACGTTCTAT 59.017 41.667 4.85 0.00 40.40 1.98
86 87 4.097437 AGCAATAATGTCTCCGACGTTCTA 59.903 41.667 4.85 0.00 40.40 2.10
87 88 3.119101 AGCAATAATGTCTCCGACGTTCT 60.119 43.478 4.85 0.00 40.40 3.01
88 89 3.187700 AGCAATAATGTCTCCGACGTTC 58.812 45.455 4.85 0.00 40.40 3.95
89 90 3.247006 AGCAATAATGTCTCCGACGTT 57.753 42.857 6.68 6.68 43.17 3.99
90 91 2.961526 AGCAATAATGTCTCCGACGT 57.038 45.000 0.00 0.00 34.95 4.34
91 92 3.050619 GGTAGCAATAATGTCTCCGACG 58.949 50.000 0.00 0.00 34.95 5.12
92 93 3.050619 CGGTAGCAATAATGTCTCCGAC 58.949 50.000 0.00 0.00 39.17 4.79
93 94 2.953648 TCGGTAGCAATAATGTCTCCGA 59.046 45.455 0.00 0.00 42.52 4.55
94 95 3.309388 CTCGGTAGCAATAATGTCTCCG 58.691 50.000 0.00 0.00 38.36 4.63
95 96 3.555168 CCCTCGGTAGCAATAATGTCTCC 60.555 52.174 0.00 0.00 0.00 3.71
96 97 3.321111 TCCCTCGGTAGCAATAATGTCTC 59.679 47.826 0.00 0.00 0.00 3.36
97 98 3.069729 GTCCCTCGGTAGCAATAATGTCT 59.930 47.826 0.00 0.00 0.00 3.41
98 99 3.181469 TGTCCCTCGGTAGCAATAATGTC 60.181 47.826 0.00 0.00 0.00 3.06
99 100 2.769663 TGTCCCTCGGTAGCAATAATGT 59.230 45.455 0.00 0.00 0.00 2.71
100 101 3.131396 GTGTCCCTCGGTAGCAATAATG 58.869 50.000 0.00 0.00 0.00 1.90
101 102 2.104281 GGTGTCCCTCGGTAGCAATAAT 59.896 50.000 0.00 0.00 0.00 1.28
102 103 1.483415 GGTGTCCCTCGGTAGCAATAA 59.517 52.381 0.00 0.00 0.00 1.40
103 104 1.117150 GGTGTCCCTCGGTAGCAATA 58.883 55.000 0.00 0.00 0.00 1.90
104 105 1.905512 GGTGTCCCTCGGTAGCAAT 59.094 57.895 0.00 0.00 0.00 3.56
105 106 2.642254 CGGTGTCCCTCGGTAGCAA 61.642 63.158 0.00 0.00 0.00 3.91
106 107 3.066190 CGGTGTCCCTCGGTAGCA 61.066 66.667 0.00 0.00 0.00 3.49
107 108 4.509737 GCGGTGTCCCTCGGTAGC 62.510 72.222 0.00 0.00 0.00 3.58
108 109 3.834799 GGCGGTGTCCCTCGGTAG 61.835 72.222 0.00 0.00 0.00 3.18
127 128 3.601685 GTTGGGGTTGTGTGGCGG 61.602 66.667 0.00 0.00 0.00 6.13
128 129 3.601685 GGTTGGGGTTGTGTGGCG 61.602 66.667 0.00 0.00 0.00 5.69
129 130 2.026945 CTTGGTTGGGGTTGTGTGGC 62.027 60.000 0.00 0.00 0.00 5.01
130 131 0.396417 TCTTGGTTGGGGTTGTGTGG 60.396 55.000 0.00 0.00 0.00 4.17
131 132 0.744281 GTCTTGGTTGGGGTTGTGTG 59.256 55.000 0.00 0.00 0.00 3.82
132 133 0.750182 CGTCTTGGTTGGGGTTGTGT 60.750 55.000 0.00 0.00 0.00 3.72
133 134 0.750182 ACGTCTTGGTTGGGGTTGTG 60.750 55.000 0.00 0.00 0.00 3.33
134 135 0.033894 AACGTCTTGGTTGGGGTTGT 60.034 50.000 0.00 0.00 0.00 3.32
135 136 0.666374 GAACGTCTTGGTTGGGGTTG 59.334 55.000 0.00 0.00 0.00 3.77
136 137 0.256464 TGAACGTCTTGGTTGGGGTT 59.744 50.000 0.00 0.00 0.00 4.11
137 138 0.256464 TTGAACGTCTTGGTTGGGGT 59.744 50.000 0.00 0.00 0.00 4.95
138 139 0.666374 GTTGAACGTCTTGGTTGGGG 59.334 55.000 0.00 0.00 0.00 4.96
139 140 0.666374 GGTTGAACGTCTTGGTTGGG 59.334 55.000 0.00 0.00 0.00 4.12
140 141 1.675552 AGGTTGAACGTCTTGGTTGG 58.324 50.000 0.00 0.00 0.00 3.77
141 142 2.223377 GCTAGGTTGAACGTCTTGGTTG 59.777 50.000 0.00 0.00 0.00 3.77
142 143 2.158871 TGCTAGGTTGAACGTCTTGGTT 60.159 45.455 0.00 0.00 0.00 3.67
143 144 1.414919 TGCTAGGTTGAACGTCTTGGT 59.585 47.619 0.00 0.00 0.00 3.67
144 145 2.163818 TGCTAGGTTGAACGTCTTGG 57.836 50.000 0.00 0.00 0.00 3.61
145 146 4.545823 TTTTGCTAGGTTGAACGTCTTG 57.454 40.909 0.00 0.00 0.00 3.02
146 147 4.495184 CGTTTTTGCTAGGTTGAACGTCTT 60.495 41.667 0.00 0.00 36.20 3.01
147 148 3.001939 CGTTTTTGCTAGGTTGAACGTCT 59.998 43.478 0.00 0.00 36.20 4.18
148 149 3.001533 TCGTTTTTGCTAGGTTGAACGTC 59.998 43.478 0.00 0.00 40.29 4.34
149 150 2.937799 TCGTTTTTGCTAGGTTGAACGT 59.062 40.909 6.37 0.00 40.29 3.99
150 151 3.246699 TCTCGTTTTTGCTAGGTTGAACG 59.753 43.478 0.00 0.00 40.63 3.95
151 152 4.806342 TCTCGTTTTTGCTAGGTTGAAC 57.194 40.909 0.00 0.00 0.00 3.18
152 153 4.260456 CGTTCTCGTTTTTGCTAGGTTGAA 60.260 41.667 0.00 0.00 0.00 2.69
153 154 3.246699 CGTTCTCGTTTTTGCTAGGTTGA 59.753 43.478 0.00 0.00 0.00 3.18
154 155 3.541711 CGTTCTCGTTTTTGCTAGGTTG 58.458 45.455 0.00 0.00 0.00 3.77
155 156 2.546789 CCGTTCTCGTTTTTGCTAGGTT 59.453 45.455 0.00 0.00 35.01 3.50
156 157 2.140717 CCGTTCTCGTTTTTGCTAGGT 58.859 47.619 0.00 0.00 35.01 3.08
157 158 1.463444 CCCGTTCTCGTTTTTGCTAGG 59.537 52.381 0.00 0.00 35.01 3.02
158 159 2.140717 ACCCGTTCTCGTTTTTGCTAG 58.859 47.619 0.00 0.00 35.01 3.42
159 160 2.137523 GACCCGTTCTCGTTTTTGCTA 58.862 47.619 0.00 0.00 35.01 3.49
160 161 0.942252 GACCCGTTCTCGTTTTTGCT 59.058 50.000 0.00 0.00 35.01 3.91
161 162 0.040692 GGACCCGTTCTCGTTTTTGC 60.041 55.000 0.00 0.00 35.01 3.68
162 163 0.589708 GGGACCCGTTCTCGTTTTTG 59.410 55.000 0.00 0.00 35.01 2.44
163 164 3.011085 GGGACCCGTTCTCGTTTTT 57.989 52.632 0.00 0.00 35.01 1.94
164 165 4.785767 GGGACCCGTTCTCGTTTT 57.214 55.556 0.00 0.00 35.01 2.43
194 195 3.930012 CGGAGAATCTCGGCCCCC 61.930 72.222 3.96 0.00 33.73 5.40
195 196 4.610714 GCGGAGAATCTCGGCCCC 62.611 72.222 26.14 3.42 46.40 5.80
199 200 1.066587 GAGGTGCGGAGAATCTCGG 59.933 63.158 12.72 12.72 34.58 4.63
200 201 1.066587 GGAGGTGCGGAGAATCTCG 59.933 63.158 3.96 1.27 33.73 4.04
201 202 0.179097 GTGGAGGTGCGGAGAATCTC 60.179 60.000 0.71 0.71 33.73 2.75
202 203 0.904865 TGTGGAGGTGCGGAGAATCT 60.905 55.000 0.00 0.00 33.73 2.40
203 204 0.460987 CTGTGGAGGTGCGGAGAATC 60.461 60.000 0.00 0.00 0.00 2.52
204 205 1.599047 CTGTGGAGGTGCGGAGAAT 59.401 57.895 0.00 0.00 0.00 2.40
205 206 2.583441 CCTGTGGAGGTGCGGAGAA 61.583 63.158 0.00 0.00 34.16 2.87
206 207 2.997315 CCTGTGGAGGTGCGGAGA 60.997 66.667 0.00 0.00 34.16 3.71
207 208 4.767255 GCCTGTGGAGGTGCGGAG 62.767 72.222 0.00 0.00 42.15 4.63
210 211 4.641645 TTGGCCTGTGGAGGTGCG 62.642 66.667 3.32 0.00 42.15 5.34
211 212 2.203480 TTTGGCCTGTGGAGGTGC 60.203 61.111 3.32 0.00 42.15 5.01
212 213 1.604593 CCTTTGGCCTGTGGAGGTG 60.605 63.158 3.32 0.00 42.15 4.00
213 214 2.846532 CCTTTGGCCTGTGGAGGT 59.153 61.111 3.32 0.00 42.15 3.85
214 215 2.677875 GCCTTTGGCCTGTGGAGG 60.678 66.667 3.32 5.20 44.06 4.30
224 225 3.302129 GCCTCCAATGGCCTTTGG 58.698 61.111 34.41 34.41 46.82 3.28
261 262 3.839432 CTTCCTCCTCCCGTCGGC 61.839 72.222 5.50 0.00 0.00 5.54
262 263 3.148279 CCTTCCTCCTCCCGTCGG 61.148 72.222 3.60 3.60 0.00 4.79
263 264 3.148279 CCCTTCCTCCTCCCGTCG 61.148 72.222 0.00 0.00 0.00 5.12
264 265 2.764547 CCCCTTCCTCCTCCCGTC 60.765 72.222 0.00 0.00 0.00 4.79
265 266 3.281787 TCCCCTTCCTCCTCCCGT 61.282 66.667 0.00 0.00 0.00 5.28
266 267 2.764547 GTCCCCTTCCTCCTCCCG 60.765 72.222 0.00 0.00 0.00 5.14
267 268 0.550393 AAAGTCCCCTTCCTCCTCCC 60.550 60.000 0.00 0.00 0.00 4.30
268 269 1.282447 GAAAAGTCCCCTTCCTCCTCC 59.718 57.143 0.00 0.00 0.00 4.30
269 270 2.270858 AGAAAAGTCCCCTTCCTCCTC 58.729 52.381 0.00 0.00 0.00 3.71
270 271 2.376855 CAAGAAAAGTCCCCTTCCTCCT 59.623 50.000 0.00 0.00 0.00 3.69
271 272 2.555448 CCAAGAAAAGTCCCCTTCCTCC 60.555 54.545 0.00 0.00 0.00 4.30
272 273 2.555448 CCCAAGAAAAGTCCCCTTCCTC 60.555 54.545 0.00 0.00 0.00 3.71
273 274 1.429299 CCCAAGAAAAGTCCCCTTCCT 59.571 52.381 0.00 0.00 0.00 3.36
274 275 1.550179 CCCCAAGAAAAGTCCCCTTCC 60.550 57.143 0.00 0.00 0.00 3.46
275 276 1.427753 TCCCCAAGAAAAGTCCCCTTC 59.572 52.381 0.00 0.00 0.00 3.46
276 277 1.429299 CTCCCCAAGAAAAGTCCCCTT 59.571 52.381 0.00 0.00 0.00 3.95
277 278 1.076438 CTCCCCAAGAAAAGTCCCCT 58.924 55.000 0.00 0.00 0.00 4.79
278 279 0.039764 CCTCCCCAAGAAAAGTCCCC 59.960 60.000 0.00 0.00 0.00 4.81
279 280 1.004862 CTCCTCCCCAAGAAAAGTCCC 59.995 57.143 0.00 0.00 0.00 4.46
280 281 1.004862 CCTCCTCCCCAAGAAAAGTCC 59.995 57.143 0.00 0.00 0.00 3.85
281 282 1.985895 TCCTCCTCCCCAAGAAAAGTC 59.014 52.381 0.00 0.00 0.00 3.01
282 283 2.133858 TCCTCCTCCCCAAGAAAAGT 57.866 50.000 0.00 0.00 0.00 2.66
283 284 3.425659 CTTTCCTCCTCCCCAAGAAAAG 58.574 50.000 0.00 0.00 0.00 2.27
284 285 2.490902 GCTTTCCTCCTCCCCAAGAAAA 60.491 50.000 0.00 0.00 0.00 2.29
285 286 1.075536 GCTTTCCTCCTCCCCAAGAAA 59.924 52.381 0.00 0.00 0.00 2.52
286 287 0.698818 GCTTTCCTCCTCCCCAAGAA 59.301 55.000 0.00 0.00 0.00 2.52
287 288 0.475632 TGCTTTCCTCCTCCCCAAGA 60.476 55.000 0.00 0.00 0.00 3.02
288 289 0.034670 CTGCTTTCCTCCTCCCCAAG 60.035 60.000 0.00 0.00 0.00 3.61
289 290 0.772124 ACTGCTTTCCTCCTCCCCAA 60.772 55.000 0.00 0.00 0.00 4.12
290 291 0.118346 TACTGCTTTCCTCCTCCCCA 59.882 55.000 0.00 0.00 0.00 4.96
291 292 1.065345 GTTACTGCTTTCCTCCTCCCC 60.065 57.143 0.00 0.00 0.00 4.81
292 293 1.405661 CGTTACTGCTTTCCTCCTCCC 60.406 57.143 0.00 0.00 0.00 4.30
293 294 2.007547 GCGTTACTGCTTTCCTCCTCC 61.008 57.143 0.00 0.00 0.00 4.30
294 295 1.360820 GCGTTACTGCTTTCCTCCTC 58.639 55.000 0.00 0.00 0.00 3.71
295 296 0.036294 GGCGTTACTGCTTTCCTCCT 60.036 55.000 0.00 0.00 34.52 3.69
296 297 1.025113 GGGCGTTACTGCTTTCCTCC 61.025 60.000 0.00 0.00 34.52 4.30
297 298 0.321298 TGGGCGTTACTGCTTTCCTC 60.321 55.000 0.00 0.00 34.52 3.71
298 299 0.605589 GTGGGCGTTACTGCTTTCCT 60.606 55.000 0.00 0.00 34.52 3.36
299 300 0.605589 AGTGGGCGTTACTGCTTTCC 60.606 55.000 0.00 0.00 34.52 3.13
300 301 1.197036 GAAGTGGGCGTTACTGCTTTC 59.803 52.381 0.00 0.00 34.52 2.62
301 302 1.202770 AGAAGTGGGCGTTACTGCTTT 60.203 47.619 0.00 0.00 29.51 3.51
302 303 0.396811 AGAAGTGGGCGTTACTGCTT 59.603 50.000 0.00 0.00 29.51 3.91
303 304 0.037232 GAGAAGTGGGCGTTACTGCT 60.037 55.000 0.00 0.00 36.74 4.24
304 305 1.019805 GGAGAAGTGGGCGTTACTGC 61.020 60.000 0.00 0.00 0.00 4.40
305 306 0.320374 TGGAGAAGTGGGCGTTACTG 59.680 55.000 0.00 0.00 0.00 2.74
306 307 1.053424 TTGGAGAAGTGGGCGTTACT 58.947 50.000 0.00 0.00 0.00 2.24
307 308 1.804748 CTTTGGAGAAGTGGGCGTTAC 59.195 52.381 0.00 0.00 0.00 2.50
308 309 1.418637 ACTTTGGAGAAGTGGGCGTTA 59.581 47.619 0.00 0.00 0.00 3.18
309 310 0.182775 ACTTTGGAGAAGTGGGCGTT 59.817 50.000 0.00 0.00 0.00 4.84
310 311 0.182775 AACTTTGGAGAAGTGGGCGT 59.817 50.000 0.00 0.00 0.00 5.68
311 312 0.875059 GAACTTTGGAGAAGTGGGCG 59.125 55.000 0.00 0.00 0.00 6.13
312 313 1.981256 TGAACTTTGGAGAAGTGGGC 58.019 50.000 0.00 0.00 0.00 5.36
313 314 5.500234 TCATATGAACTTTGGAGAAGTGGG 58.500 41.667 1.98 0.00 0.00 4.61
360 361 9.548208 GATGCTACTTTTTCTTGAGATGTTTAC 57.452 33.333 0.00 0.00 0.00 2.01
370 371 7.132213 TCAACTTTCGATGCTACTTTTTCTTG 58.868 34.615 0.00 0.00 0.00 3.02
410 412 6.042897 GGGGCTAGTTAAACCTATAGACATGT 59.957 42.308 0.00 0.00 0.00 3.21
435 437 7.031226 TCCATGTTTTTCTTCTGAACTCTTG 57.969 36.000 0.00 0.00 31.02 3.02
437 439 7.830099 ATTCCATGTTTTTCTTCTGAACTCT 57.170 32.000 0.00 0.00 31.02 3.24
453 455 7.840716 TCCATGAAAAGAAATCCTATTCCATGT 59.159 33.333 0.00 0.00 30.13 3.21
463 465 4.463891 TCCAGCTTCCATGAAAAGAAATCC 59.536 41.667 10.84 0.00 0.00 3.01
464 466 5.649782 TCCAGCTTCCATGAAAAGAAATC 57.350 39.130 10.84 0.00 0.00 2.17
487 489 2.301346 CCTTGGAGAAAAGTGCACACT 58.699 47.619 21.04 12.21 44.94 3.55
500 502 2.335712 GCCGCAGTTTCCCTTGGAG 61.336 63.158 0.00 0.00 31.21 3.86
534 536 4.498894 TGAAAGTCATGATGCCATCTCT 57.501 40.909 6.21 0.00 0.00 3.10
578 580 8.169268 ACGCGAACATTTTCAAAATTACAAAAA 58.831 25.926 15.93 0.00 0.00 1.94
731 733 3.543460 GCTGCATCGTTCGGTATTGTAAC 60.543 47.826 0.00 0.00 0.00 2.50
846 3876 1.478631 GGGAAAGGGATTCAAGCAGG 58.521 55.000 0.00 0.00 39.98 4.85
848 3878 0.783206 TGGGGAAAGGGATTCAAGCA 59.217 50.000 0.00 0.00 39.98 3.91
849 3879 1.186200 GTGGGGAAAGGGATTCAAGC 58.814 55.000 0.00 0.00 39.98 4.01
850 3880 1.004277 TCGTGGGGAAAGGGATTCAAG 59.996 52.381 0.00 0.00 39.98 3.02
851 3881 1.068948 TCGTGGGGAAAGGGATTCAA 58.931 50.000 0.00 0.00 39.98 2.69
879 3909 2.611292 GCTTTATGATTCGTGCAGCTCT 59.389 45.455 0.00 0.00 0.00 4.09
914 3944 2.283298 CCTTTATCATCAGCAGCGTGT 58.717 47.619 0.00 0.00 0.00 4.49
955 3986 3.003897 CGATACGAAGGAAAGAGGAGGAG 59.996 52.174 0.00 0.00 0.00 3.69
956 3987 2.950309 CGATACGAAGGAAAGAGGAGGA 59.050 50.000 0.00 0.00 0.00 3.71
957 3988 2.034812 CCGATACGAAGGAAAGAGGAGG 59.965 54.545 0.00 0.00 0.00 4.30
971 4002 1.609580 CCTCCCTCTCTCTCCGATACG 60.610 61.905 0.00 0.00 0.00 3.06
1187 4573 6.884836 GGGAGTCACCTACAAGTAATTTGAAT 59.115 38.462 0.00 0.00 38.26 2.57
1224 4610 1.771255 GCTAGAGTTCACCATCCCCAT 59.229 52.381 0.00 0.00 0.00 4.00
1421 4807 6.951971 ACAGCTAGAACAAATCTACAAGGAT 58.048 36.000 0.00 0.00 39.71 3.24
1448 4834 4.202503 GGCCCTTACCCTAATACCTAAACC 60.203 50.000 0.00 0.00 0.00 3.27
1456 4842 5.229174 ACTTATGTGGCCCTTACCCTAATA 58.771 41.667 0.00 0.00 0.00 0.98
1464 4850 9.403583 CTTAAGAAAATACTTATGTGGCCCTTA 57.596 33.333 0.00 0.00 33.29 2.69
1503 4889 6.385467 ACTCCACTCCTAGCAGAGAAATAAAT 59.615 38.462 5.54 0.00 37.33 1.40
1504 4890 5.721960 ACTCCACTCCTAGCAGAGAAATAAA 59.278 40.000 5.54 0.00 37.33 1.40
1514 4901 1.352083 AGCAAACTCCACTCCTAGCA 58.648 50.000 0.00 0.00 0.00 3.49
1573 4960 4.015764 TGTGCCAGCTTGCTAAATATTCA 58.984 39.130 11.53 0.00 0.00 2.57
1619 5010 2.816672 TGACACAAACACACACACACAT 59.183 40.909 0.00 0.00 0.00 3.21
1669 5092 0.416231 TGGGGGCAGAGGTAGTAACT 59.584 55.000 0.00 0.00 0.00 2.24
1718 5141 7.556275 ACTTGGTCAAACTTAGAAATCACTGAA 59.444 33.333 0.00 0.00 0.00 3.02
1889 5312 7.719483 ACATGGCATATAAATCCAGTGAAAAG 58.281 34.615 0.00 0.00 32.78 2.27
1998 5421 9.468532 AAAAACATCTCTTATTTTTCTGCTGAC 57.531 29.630 0.00 0.00 31.52 3.51
2165 5593 3.322254 TCTCACTCACTTCTGGTTCTTCC 59.678 47.826 0.00 0.00 0.00 3.46
2965 6393 4.873259 GCAAACTTAAAAACCAAAGCAGGA 59.127 37.500 0.00 0.00 0.00 3.86
2985 6413 6.650807 GCATCTGCCTACAAATATAGTAGCAA 59.349 38.462 8.90 1.29 38.07 3.91
2995 6423 5.834742 TCCAATATTGCATCTGCCTACAAAT 59.165 36.000 10.11 0.00 41.18 2.32
2996 6424 5.199723 TCCAATATTGCATCTGCCTACAAA 58.800 37.500 10.11 0.00 41.18 2.83
3269 6708 5.983720 GCGGTGACATAATCATGTAACTACT 59.016 40.000 0.00 0.00 45.58 2.57
3292 6731 9.237846 GTAAGGCAATAAATCTTGAAATACAGC 57.762 33.333 0.00 0.00 0.00 4.40
3392 6832 8.492415 TTGCATATATGTCTAGGTCCTAAACT 57.508 34.615 14.14 0.00 0.00 2.66
3704 7378 9.599866 CTAGTCAATGATCCAAACATACTTGTA 57.400 33.333 0.00 0.00 34.06 2.41
3706 7380 8.722480 TCTAGTCAATGATCCAAACATACTTG 57.278 34.615 0.00 0.00 0.00 3.16
3707 7381 9.388506 CTTCTAGTCAATGATCCAAACATACTT 57.611 33.333 0.00 0.00 0.00 2.24
3743 7418 7.536855 AGTAAGTACAGTAGTAATGAGCACAC 58.463 38.462 4.30 0.00 30.67 3.82
3745 7420 8.983307 AAAGTAAGTACAGTAGTAATGAGCAC 57.017 34.615 4.30 0.00 30.67 4.40
3788 7463 5.293319 TGTGCCCTACAAACACTAGTTTA 57.707 39.130 0.00 0.00 45.80 2.01
3984 7659 4.241590 TCATGAATCACAACCTGCAAAC 57.758 40.909 0.00 0.00 0.00 2.93
3989 7664 4.267536 ACTCCATCATGAATCACAACCTG 58.732 43.478 0.00 0.00 0.00 4.00
4117 7792 4.450080 GGTTAAACGGACAAGTCTACCAAG 59.550 45.833 0.00 0.00 0.00 3.61
4121 7796 4.370917 TGTGGTTAAACGGACAAGTCTAC 58.629 43.478 0.00 0.00 0.00 2.59
4151 7826 4.728772 CATGGCTTTGGGAATATCCTGTA 58.271 43.478 0.00 0.00 36.57 2.74
4284 7960 3.067180 TGAACGAACGACTTTGGTACTCT 59.933 43.478 0.14 0.00 0.00 3.24
4345 8021 5.253330 TCAATGATTAGGTTGGTCCTTCAC 58.747 41.667 0.00 0.00 45.67 3.18
4365 8041 8.640651 TGATCTGAATCAAAGACCAAAATTCAA 58.359 29.630 0.00 0.00 38.97 2.69
4390 8066 9.383519 ACACCAGATCATGTTACTTTATAACTG 57.616 33.333 0.00 0.00 0.00 3.16
4428 8104 6.463995 AAGCTGAACCAGATTTTTAACACA 57.536 33.333 0.00 0.00 36.68 3.72
4482 8158 1.745489 GGCCGTGCTCAAGTTAGGG 60.745 63.158 0.00 0.00 0.00 3.53
4535 8211 2.494471 TCGTACAGGAATCGGACACAAT 59.506 45.455 0.00 0.00 0.00 2.71
4607 8283 0.037697 TCCTGTACGATGGTGCACAC 60.038 55.000 20.43 7.51 34.89 3.82
4686 8362 5.586243 GCATCTGAACACTAAGGCTGAATTA 59.414 40.000 0.00 0.00 0.00 1.40
4783 8466 8.109634 ACATAAGGATTCTGAACTAAACCATGT 58.890 33.333 0.00 0.00 0.00 3.21
4809 8492 4.271661 TCTGATGCATGCACCTAAAATCA 58.728 39.130 25.37 19.14 0.00 2.57
5001 8765 1.422977 TAAACCAGGCAGGAGCACCA 61.423 55.000 1.67 0.00 44.61 4.17
5036 8800 7.986085 ATGGAAGGATATGGTTCGAAATTAG 57.014 36.000 0.00 0.00 0.00 1.73
5056 8820 4.028131 AGTGGGTGTAACTCGATAATGGA 58.972 43.478 0.00 0.00 43.75 3.41
5057 8821 4.119862 CAGTGGGTGTAACTCGATAATGG 58.880 47.826 0.00 0.00 43.75 3.16
5260 9024 4.952262 TGCTATGTTGAGATGCTGTTTC 57.048 40.909 0.00 0.00 0.00 2.78
5318 9082 2.755655 CTCCGTGAGAGCTTTAGGAAGA 59.244 50.000 0.00 0.00 35.31 2.87
5401 9165 1.550524 CCAACAAGAGATCTCCCGTCA 59.449 52.381 19.30 0.00 0.00 4.35
5441 9207 4.452455 AGGATGAGTGCTTAGTTTTGTTCG 59.548 41.667 0.00 0.00 0.00 3.95
5454 9220 2.818130 TTGCCAAAAAGGATGAGTGC 57.182 45.000 0.00 0.00 41.22 4.40
5467 9233 1.425066 AGAGTCCACTCCATTTGCCAA 59.575 47.619 2.96 0.00 43.88 4.52
5499 9272 0.753262 AGTTGGTATAGCGAGGCTGG 59.247 55.000 0.00 0.00 40.10 4.85
5541 9314 1.815003 CCACCAAGAGGAATTCAGTGC 59.185 52.381 7.93 0.00 38.69 4.40
5802 9576 2.250939 TTGCTTGGTGCGAAGACCG 61.251 57.895 0.00 0.00 46.63 4.79
5805 9579 1.608025 CCTAGTTGCTTGGTGCGAAGA 60.608 52.381 0.00 0.00 46.63 2.87
5948 9722 7.792374 TGGAGTATTCATAGATCAAGCAAAC 57.208 36.000 0.00 0.00 0.00 2.93
5968 9742 4.201990 GCAGGTTTGAAGATTAGCATGGAG 60.202 45.833 0.00 0.00 0.00 3.86
6091 9904 2.823747 TGGGACGGATGGAGTATTATCG 59.176 50.000 0.00 0.00 0.00 2.92
6148 9966 3.978610 ACTAAATACTCCCTCCGTCACT 58.021 45.455 0.00 0.00 0.00 3.41
6165 9983 9.578576 ACATTCAGGGTATTACTACGATACTAA 57.421 33.333 0.00 0.00 32.02 2.24
6201 10020 6.243216 AGGTAGTACAAAGAACACCAGAAA 57.757 37.500 2.06 0.00 0.00 2.52
6275 10095 4.018779 ACACTTATTTTGGATCGGAGGGAA 60.019 41.667 0.00 0.00 0.00 3.97
6299 10119 8.448615 GTTTTTGACACCATAATAGTACTCCAC 58.551 37.037 0.00 0.00 0.00 4.02
6314 10134 3.819337 GGAGGGAGTAAGTTTTTGACACC 59.181 47.826 0.00 0.00 0.00 4.16
6326 10146 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
6329 10149 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6330 10150 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
6331 10151 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
6332 10152 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
6333 10153 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
6334 10154 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
6335 10155 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
6336 10156 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
6337 10157 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
6338 10158 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
6339 10159 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
6340 10160 7.582679 CGTGTCAAAAACGCTCTTATATTATGG 59.417 37.037 0.00 0.00 36.18 2.74
6341 10161 8.114290 ACGTGTCAAAAACGCTCTTATATTATG 58.886 33.333 0.00 0.00 44.80 1.90
6342 10162 8.193250 ACGTGTCAAAAACGCTCTTATATTAT 57.807 30.769 0.00 0.00 44.80 1.28
6343 10163 7.585286 ACGTGTCAAAAACGCTCTTATATTA 57.415 32.000 0.00 0.00 44.80 0.98
6344 10164 6.476243 ACGTGTCAAAAACGCTCTTATATT 57.524 33.333 0.00 0.00 44.80 1.28
6345 10165 7.585286 TTACGTGTCAAAAACGCTCTTATAT 57.415 32.000 0.00 0.00 44.80 0.86
6346 10166 7.405469 TTTACGTGTCAAAAACGCTCTTATA 57.595 32.000 0.00 0.00 44.80 0.98
6347 10167 5.910637 TTACGTGTCAAAAACGCTCTTAT 57.089 34.783 0.00 0.00 44.80 1.73
6348 10168 5.715429 TTTACGTGTCAAAAACGCTCTTA 57.285 34.783 0.00 0.00 44.80 2.10
6349 10169 4.603231 TTTACGTGTCAAAAACGCTCTT 57.397 36.364 0.00 0.00 44.80 2.85
6350 10170 4.603231 TTTTACGTGTCAAAAACGCTCT 57.397 36.364 0.00 0.00 44.80 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.