Multiple sequence alignment - TraesCS4D01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G235400 chr4D 100.000 5427 0 0 1 5427 396437272 396431846 0.000000e+00 10022
1 TraesCS4D01G235400 chr4B 90.054 2021 97 37 212 2166 488262654 488260672 0.000000e+00 2523
2 TraesCS4D01G235400 chr4B 92.521 1083 44 16 3581 4646 488259252 488258190 0.000000e+00 1517
3 TraesCS4D01G235400 chr4B 92.745 827 33 9 2247 3065 488260681 488259874 0.000000e+00 1170
4 TraesCS4D01G235400 chr4B 86.883 770 83 8 4645 5411 488258132 488257378 0.000000e+00 846
5 TraesCS4D01G235400 chr4B 91.620 537 28 12 3062 3588 488259834 488259305 0.000000e+00 726
6 TraesCS4D01G235400 chr4A 89.955 1991 123 35 212 2166 78164011 78162062 0.000000e+00 2497
7 TraesCS4D01G235400 chr4A 93.872 1028 39 8 3852 4869 78160502 78159489 0.000000e+00 1528
8 TraesCS4D01G235400 chr4A 88.995 836 48 21 2247 3065 78162071 78161263 0.000000e+00 994
9 TraesCS4D01G235400 chr4A 94.831 503 14 10 3268 3768 78161048 78160556 0.000000e+00 774
10 TraesCS4D01G235400 chr4A 89.121 239 22 3 4985 5223 78159494 78159260 1.480000e-75 294
11 TraesCS4D01G235400 chr4A 97.110 173 5 0 3064 3236 78161221 78161049 5.320000e-75 292
12 TraesCS4D01G235400 chr4A 84.516 155 11 4 1 142 78164173 78164019 2.040000e-29 141
13 TraesCS4D01G235400 chr5D 87.546 819 54 22 2247 3065 517418558 517417788 0.000000e+00 904
14 TraesCS4D01G235400 chr5D 89.106 358 23 8 1796 2144 517418925 517418575 1.080000e-116 431
15 TraesCS4D01G235400 chr5D 92.147 191 13 2 3073 3262 517417740 517417551 8.960000e-68 268
16 TraesCS4D01G235400 chr1B 85.542 166 24 0 3600 3765 491040075 491039910 2.010000e-39 174
17 TraesCS4D01G235400 chr1D 83.152 184 31 0 3582 3765 366724585 366724768 9.350000e-38 169
18 TraesCS4D01G235400 chr1A 84.940 166 25 0 3600 3765 465453908 465453743 9.350000e-38 169
19 TraesCS4D01G235400 chr7A 89.744 78 6 2 2168 2244 128926803 128926879 1.240000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G235400 chr4D 396431846 396437272 5426 True 10022.000000 10022 100.000000 1 5427 1 chr4D.!!$R1 5426
1 TraesCS4D01G235400 chr4B 488257378 488262654 5276 True 1356.400000 2523 90.764600 212 5411 5 chr4B.!!$R1 5199
2 TraesCS4D01G235400 chr4A 78159260 78164173 4913 True 931.428571 2497 91.200000 1 5223 7 chr4A.!!$R1 5222
3 TraesCS4D01G235400 chr5D 517417551 517418925 1374 True 534.333333 904 89.599667 1796 3262 3 chr5D.!!$R1 1466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 78 0.169230 ACGACTGTAGAAGCGAGCTG 59.831 55.0 0.00 0.0 32.16 4.24 F
174 188 0.179006 TGTTGGGCAGTGTACATGCA 60.179 50.0 22.92 0.0 45.68 3.96 F
208 222 0.321653 AATTCAGCTCCACACGGGTC 60.322 55.0 0.00 0.0 38.11 4.46 F
2183 2280 0.321996 AAGCCCTCCGTCTGTTTCTC 59.678 55.0 0.00 0.0 0.00 2.87 F
2209 2306 0.320374 AGCGAAATCGACTTGACCCA 59.680 50.0 7.06 0.0 43.02 4.51 F
2241 2338 0.330604 AGGCGACTGACCTGTACCTA 59.669 55.0 0.00 0.0 41.13 3.08 F
3781 4025 0.375106 GGTGCGCTTCAGCTAACATC 59.625 55.0 9.73 0.0 39.95 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1652 0.243365 CGAAGCAGAGCAGACAGAGT 59.757 55.0 0.0 0.0 0.0 3.24 R
1737 1797 0.317938 CCGAGCTACCGCACTGATAC 60.318 60.0 0.0 0.0 39.1 2.24 R
2190 2287 0.320374 TGGGTCAAGTCGATTTCGCT 59.680 50.0 0.0 0.0 39.6 4.93 R
3240 3408 0.379669 GATCCAGCCGAAATGCACAG 59.620 55.0 0.0 0.0 0.0 3.66 R
3791 4035 0.453793 AACCGAGTGATCAGAGAGCG 59.546 55.0 0.0 0.0 0.0 5.03 R
3850 4094 0.833949 GCACCCACCCCAAAAGAAAA 59.166 50.0 0.0 0.0 0.0 2.29 R
4881 5208 0.170339 GTAAACCCGTGATGCCTTGC 59.830 55.0 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.657814 AATAGTAACAGGGCCCATATGG 57.342 45.455 27.56 15.41 37.09 2.74
56 58 2.125912 CCCGTGACGCCTGAGAAG 60.126 66.667 0.00 0.00 0.00 2.85
68 70 2.488545 GCCTGAGAAGACGACTGTAGAA 59.511 50.000 0.00 0.00 0.00 2.10
76 78 0.169230 ACGACTGTAGAAGCGAGCTG 59.831 55.000 0.00 0.00 32.16 4.24
80 82 1.889829 ACTGTAGAAGCGAGCTGAAGT 59.110 47.619 0.00 0.00 0.00 3.01
93 95 0.249868 CTGAAGTCCGTGTTGCCTCA 60.250 55.000 0.00 0.00 0.00 3.86
94 96 0.531974 TGAAGTCCGTGTTGCCTCAC 60.532 55.000 0.00 0.00 35.28 3.51
95 97 1.227853 AAGTCCGTGTTGCCTCACC 60.228 57.895 3.40 0.00 35.18 4.02
96 98 1.978455 AAGTCCGTGTTGCCTCACCA 61.978 55.000 3.40 0.00 35.18 4.17
128 142 4.512484 TGAAATCAGCATGTATTCCGACA 58.488 39.130 0.00 0.00 37.40 4.35
131 145 4.937201 ATCAGCATGTATTCCGACAGTA 57.063 40.909 0.00 0.00 37.40 2.74
142 156 8.192068 TGTATTCCGACAGTATATTGTTTGTG 57.808 34.615 2.05 0.00 0.00 3.33
143 157 7.820386 TGTATTCCGACAGTATATTGTTTGTGT 59.180 33.333 2.05 0.00 0.00 3.72
146 160 5.992829 TCCGACAGTATATTGTTTGTGTGTT 59.007 36.000 2.05 0.00 0.00 3.32
147 161 6.483974 TCCGACAGTATATTGTTTGTGTGTTT 59.516 34.615 2.05 0.00 0.00 2.83
148 162 6.795114 CCGACAGTATATTGTTTGTGTGTTTC 59.205 38.462 2.05 0.00 0.00 2.78
149 163 7.348956 CGACAGTATATTGTTTGTGTGTTTCA 58.651 34.615 2.05 0.00 0.00 2.69
150 164 7.530525 CGACAGTATATTGTTTGTGTGTTTCAG 59.469 37.037 2.05 0.00 0.00 3.02
151 165 8.445275 ACAGTATATTGTTTGTGTGTTTCAGA 57.555 30.769 0.00 0.00 0.00 3.27
152 166 9.066892 ACAGTATATTGTTTGTGTGTTTCAGAT 57.933 29.630 0.00 0.00 0.00 2.90
153 167 9.897744 CAGTATATTGTTTGTGTGTTTCAGATT 57.102 29.630 0.00 0.00 0.00 2.40
154 168 9.897744 AGTATATTGTTTGTGTGTTTCAGATTG 57.102 29.630 0.00 0.00 0.00 2.67
155 169 9.677567 GTATATTGTTTGTGTGTTTCAGATTGT 57.322 29.630 0.00 0.00 0.00 2.71
156 170 6.890663 ATTGTTTGTGTGTTTCAGATTGTG 57.109 33.333 0.00 0.00 0.00 3.33
157 171 5.384063 TGTTTGTGTGTTTCAGATTGTGT 57.616 34.783 0.00 0.00 0.00 3.72
158 172 5.777802 TGTTTGTGTGTTTCAGATTGTGTT 58.222 33.333 0.00 0.00 0.00 3.32
159 173 5.632764 TGTTTGTGTGTTTCAGATTGTGTTG 59.367 36.000 0.00 0.00 0.00 3.33
160 174 4.368874 TGTGTGTTTCAGATTGTGTTGG 57.631 40.909 0.00 0.00 0.00 3.77
161 175 3.130164 TGTGTGTTTCAGATTGTGTTGGG 59.870 43.478 0.00 0.00 0.00 4.12
162 176 2.100584 TGTGTTTCAGATTGTGTTGGGC 59.899 45.455 0.00 0.00 0.00 5.36
163 177 2.100584 GTGTTTCAGATTGTGTTGGGCA 59.899 45.455 0.00 0.00 0.00 5.36
164 178 2.361757 TGTTTCAGATTGTGTTGGGCAG 59.638 45.455 0.00 0.00 0.00 4.85
165 179 2.362077 GTTTCAGATTGTGTTGGGCAGT 59.638 45.455 0.00 0.00 0.00 4.40
166 180 1.608055 TCAGATTGTGTTGGGCAGTG 58.392 50.000 0.00 0.00 0.00 3.66
167 181 1.133823 TCAGATTGTGTTGGGCAGTGT 60.134 47.619 0.00 0.00 0.00 3.55
168 182 2.105649 TCAGATTGTGTTGGGCAGTGTA 59.894 45.455 0.00 0.00 0.00 2.90
169 183 2.226437 CAGATTGTGTTGGGCAGTGTAC 59.774 50.000 0.00 0.00 0.00 2.90
170 184 2.158682 AGATTGTGTTGGGCAGTGTACA 60.159 45.455 0.00 0.00 0.00 2.90
171 185 2.356665 TTGTGTTGGGCAGTGTACAT 57.643 45.000 0.00 0.00 0.00 2.29
172 186 1.603456 TGTGTTGGGCAGTGTACATG 58.397 50.000 0.00 0.00 0.00 3.21
173 187 0.240945 GTGTTGGGCAGTGTACATGC 59.759 55.000 17.01 17.01 43.09 4.06
174 188 0.179006 TGTTGGGCAGTGTACATGCA 60.179 50.000 22.92 0.00 45.68 3.96
175 189 1.176527 GTTGGGCAGTGTACATGCAT 58.823 50.000 22.92 0.00 45.68 3.96
176 190 1.135315 GTTGGGCAGTGTACATGCATG 60.135 52.381 25.09 25.09 45.68 4.06
177 191 0.680601 TGGGCAGTGTACATGCATGG 60.681 55.000 29.41 12.32 45.68 3.66
178 192 0.394216 GGGCAGTGTACATGCATGGA 60.394 55.000 29.41 20.48 45.68 3.41
179 193 1.019673 GGCAGTGTACATGCATGGAG 58.980 55.000 29.41 11.39 45.68 3.86
180 194 1.019673 GCAGTGTACATGCATGGAGG 58.980 55.000 29.41 12.68 43.31 4.30
181 195 1.407299 GCAGTGTACATGCATGGAGGA 60.407 52.381 29.41 9.04 43.31 3.71
182 196 2.940971 GCAGTGTACATGCATGGAGGAA 60.941 50.000 29.41 8.17 43.31 3.36
183 197 3.346315 CAGTGTACATGCATGGAGGAAA 58.654 45.455 29.41 5.57 0.00 3.13
184 198 3.758023 CAGTGTACATGCATGGAGGAAAA 59.242 43.478 29.41 6.07 0.00 2.29
185 199 4.218200 CAGTGTACATGCATGGAGGAAAAA 59.782 41.667 29.41 4.54 0.00 1.94
186 200 5.018809 AGTGTACATGCATGGAGGAAAAAT 58.981 37.500 29.41 8.64 0.00 1.82
187 201 6.095300 CAGTGTACATGCATGGAGGAAAAATA 59.905 38.462 29.41 7.63 0.00 1.40
188 202 6.095440 AGTGTACATGCATGGAGGAAAAATAC 59.905 38.462 29.41 18.46 0.00 1.89
189 203 5.948758 TGTACATGCATGGAGGAAAAATACA 59.051 36.000 29.41 20.54 0.00 2.29
190 204 5.999205 ACATGCATGGAGGAAAAATACAA 57.001 34.783 29.41 0.00 0.00 2.41
191 205 6.549433 ACATGCATGGAGGAAAAATACAAT 57.451 33.333 29.41 0.48 0.00 2.71
192 206 6.949715 ACATGCATGGAGGAAAAATACAATT 58.050 32.000 29.41 0.09 0.00 2.32
193 207 7.043565 ACATGCATGGAGGAAAAATACAATTC 58.956 34.615 29.41 0.00 0.00 2.17
194 208 6.602410 TGCATGGAGGAAAAATACAATTCA 57.398 33.333 0.00 0.00 0.00 2.57
195 209 6.632909 TGCATGGAGGAAAAATACAATTCAG 58.367 36.000 0.00 0.00 0.00 3.02
196 210 5.521372 GCATGGAGGAAAAATACAATTCAGC 59.479 40.000 0.00 0.00 0.00 4.26
197 211 6.628844 GCATGGAGGAAAAATACAATTCAGCT 60.629 38.462 0.00 0.00 0.00 4.24
198 212 6.515272 TGGAGGAAAAATACAATTCAGCTC 57.485 37.500 0.00 0.00 0.00 4.09
199 213 5.418840 TGGAGGAAAAATACAATTCAGCTCC 59.581 40.000 0.00 0.00 35.90 4.70
200 214 5.418840 GGAGGAAAAATACAATTCAGCTCCA 59.581 40.000 0.00 0.00 35.65 3.86
201 215 6.272822 AGGAAAAATACAATTCAGCTCCAC 57.727 37.500 0.00 0.00 0.00 4.02
202 216 5.774690 AGGAAAAATACAATTCAGCTCCACA 59.225 36.000 0.00 0.00 0.00 4.17
203 217 5.863935 GGAAAAATACAATTCAGCTCCACAC 59.136 40.000 0.00 0.00 0.00 3.82
204 218 4.685169 AAATACAATTCAGCTCCACACG 57.315 40.909 0.00 0.00 0.00 4.49
205 219 2.093306 TACAATTCAGCTCCACACGG 57.907 50.000 0.00 0.00 0.00 4.94
206 220 0.606401 ACAATTCAGCTCCACACGGG 60.606 55.000 0.00 0.00 38.37 5.28
207 221 0.606401 CAATTCAGCTCCACACGGGT 60.606 55.000 0.00 0.00 38.11 5.28
208 222 0.321653 AATTCAGCTCCACACGGGTC 60.322 55.000 0.00 0.00 38.11 4.46
209 223 2.185310 ATTCAGCTCCACACGGGTCC 62.185 60.000 0.00 0.00 38.11 4.46
210 224 3.314331 CAGCTCCACACGGGTCCT 61.314 66.667 0.00 0.00 38.11 3.85
221 235 2.093128 ACACGGGTCCTTGATGAATACC 60.093 50.000 0.31 0.00 0.00 2.73
231 245 2.025898 TGATGAATACCAGCGGTCGTA 58.974 47.619 3.45 0.00 37.09 3.43
235 249 0.750850 AATACCAGCGGTCGTATGCT 59.249 50.000 5.64 0.00 43.58 3.79
241 255 0.381089 AGCGGTCGTATGCTGTAGAC 59.619 55.000 0.00 0.00 40.62 2.59
295 320 2.688446 AGCGTCATACTCGGAGAAATGA 59.312 45.455 12.86 15.95 36.87 2.57
317 342 1.218854 GCCCCTGCGCAATCAAATT 59.781 52.632 13.05 0.00 0.00 1.82
350 376 3.364441 GCACAGCATTCACGGGCA 61.364 61.111 0.00 0.00 0.00 5.36
387 413 2.203714 GGATCTAGGCGCTCCCCT 60.204 66.667 7.64 0.00 39.05 4.79
433 459 1.136891 AGAGCACACCAAAACAAAGCC 59.863 47.619 0.00 0.00 0.00 4.35
544 574 5.049818 AGCATTGCACTAATAAATCGCTCTC 60.050 40.000 11.91 0.00 0.00 3.20
545 575 5.683859 CATTGCACTAATAAATCGCTCTCC 58.316 41.667 0.00 0.00 0.00 3.71
546 576 4.672587 TGCACTAATAAATCGCTCTCCT 57.327 40.909 0.00 0.00 0.00 3.69
554 584 1.610363 AATCGCTCTCCTAGATCGCA 58.390 50.000 0.00 0.00 34.23 5.10
561 591 0.749649 CTCCTAGATCGCAACTGCCT 59.250 55.000 0.00 0.00 37.91 4.75
607 637 1.202065 CGCATTGCAGCAGTAAATCGT 60.202 47.619 9.69 0.00 0.00 3.73
645 675 5.163269 TGCCTACACAAATGCAGAGATATCT 60.163 40.000 4.47 4.47 0.00 1.98
729 761 1.740296 GGTTGACACGTCCCCGATG 60.740 63.158 0.00 0.00 37.88 3.84
1110 1168 2.963371 GTCGTCCTGCTCCTCGTT 59.037 61.111 0.00 0.00 0.00 3.85
1242 1300 4.643387 ACCTCCACGCCCAAGCAC 62.643 66.667 0.00 0.00 39.83 4.40
1576 1635 0.901580 TCTCCCCGTCACTGTTACCC 60.902 60.000 0.00 0.00 0.00 3.69
1587 1646 4.023193 GTCACTGTTACCCTGTTGAATTGG 60.023 45.833 0.00 0.00 0.00 3.16
1588 1647 3.255642 CACTGTTACCCTGTTGAATTGGG 59.744 47.826 4.29 4.29 46.07 4.12
1589 1648 2.231235 CTGTTACCCTGTTGAATTGGGC 59.769 50.000 5.54 0.00 44.56 5.36
1591 1650 2.492088 GTTACCCTGTTGAATTGGGCTC 59.508 50.000 5.54 0.00 44.56 4.70
1592 1651 0.779997 ACCCTGTTGAATTGGGCTCT 59.220 50.000 5.54 0.00 44.56 4.09
1593 1652 1.992557 ACCCTGTTGAATTGGGCTCTA 59.007 47.619 5.54 0.00 44.56 2.43
1600 1659 3.895232 TGAATTGGGCTCTACTCTGTC 57.105 47.619 0.00 0.00 0.00 3.51
1602 1661 3.196469 TGAATTGGGCTCTACTCTGTCTG 59.804 47.826 0.00 0.00 0.00 3.51
1614 1673 0.676184 TCTGTCTGCTCTGCTTCGTT 59.324 50.000 0.00 0.00 0.00 3.85
1616 1675 0.664466 TGTCTGCTCTGCTTCGTTCG 60.664 55.000 0.00 0.00 0.00 3.95
1617 1676 0.664767 GTCTGCTCTGCTTCGTTCGT 60.665 55.000 0.00 0.00 0.00 3.85
1619 1678 1.347817 CTGCTCTGCTTCGTTCGTCC 61.348 60.000 0.00 0.00 0.00 4.79
1647 1706 5.846203 TGGTAGAAACGTAAGCAGTACTTT 58.154 37.500 0.00 0.00 45.62 2.66
1648 1707 6.282930 TGGTAGAAACGTAAGCAGTACTTTT 58.717 36.000 0.00 2.85 45.62 2.27
1649 1708 6.201425 TGGTAGAAACGTAAGCAGTACTTTTG 59.799 38.462 0.00 0.00 45.62 2.44
1650 1709 5.091910 AGAAACGTAAGCAGTACTTTTGC 57.908 39.130 0.00 0.00 45.62 3.68
1726 1786 4.251268 GGTACATGTCTGTTCCCTTGTAC 58.749 47.826 0.00 0.00 36.96 2.90
1734 1794 6.250711 TGTCTGTTCCCTTGTACTAGTATCA 58.749 40.000 5.75 3.68 0.00 2.15
1735 1795 6.152323 TGTCTGTTCCCTTGTACTAGTATCAC 59.848 42.308 5.75 0.00 0.00 3.06
1736 1796 6.377712 GTCTGTTCCCTTGTACTAGTATCACT 59.622 42.308 5.75 0.00 0.00 3.41
1737 1797 6.377429 TCTGTTCCCTTGTACTAGTATCACTG 59.623 42.308 5.75 2.84 0.00 3.66
1738 1798 6.014647 TGTTCCCTTGTACTAGTATCACTGT 58.985 40.000 5.75 0.00 0.00 3.55
1739 1799 7.177184 TGTTCCCTTGTACTAGTATCACTGTA 58.823 38.462 5.75 0.00 0.00 2.74
1740 1800 7.837689 TGTTCCCTTGTACTAGTATCACTGTAT 59.162 37.037 5.75 0.00 0.00 2.29
1741 1801 8.351461 GTTCCCTTGTACTAGTATCACTGTATC 58.649 40.741 5.75 0.00 0.00 2.24
1742 1802 7.580007 TCCCTTGTACTAGTATCACTGTATCA 58.420 38.462 5.75 0.00 0.00 2.15
1788 1848 3.957497 TGTGTGAATGGGTTAAAGCTTGT 59.043 39.130 0.00 0.00 0.00 3.16
1995 2088 2.035832 AGGTCCAATTTGTCCTTTTGCG 59.964 45.455 0.00 0.00 0.00 4.85
2034 2127 4.154015 CCACATCGTACATTTCTGCTCAAA 59.846 41.667 0.00 0.00 0.00 2.69
2118 2211 1.266989 GTTGTAGTTCTGCTGTTGGCC 59.733 52.381 0.00 0.00 40.92 5.36
2174 2271 2.882170 GGCAAAATAAGCCCTCCGT 58.118 52.632 0.00 0.00 46.50 4.69
2175 2272 0.738975 GGCAAAATAAGCCCTCCGTC 59.261 55.000 0.00 0.00 46.50 4.79
2176 2273 1.682087 GGCAAAATAAGCCCTCCGTCT 60.682 52.381 0.00 0.00 46.50 4.18
2177 2274 1.401905 GCAAAATAAGCCCTCCGTCTG 59.598 52.381 0.00 0.00 0.00 3.51
2178 2275 2.711542 CAAAATAAGCCCTCCGTCTGT 58.288 47.619 0.00 0.00 0.00 3.41
2179 2276 3.081804 CAAAATAAGCCCTCCGTCTGTT 58.918 45.455 0.00 0.00 0.00 3.16
2180 2277 3.434940 AAATAAGCCCTCCGTCTGTTT 57.565 42.857 0.00 0.00 0.00 2.83
2181 2278 2.693267 ATAAGCCCTCCGTCTGTTTC 57.307 50.000 0.00 0.00 0.00 2.78
2182 2279 1.640917 TAAGCCCTCCGTCTGTTTCT 58.359 50.000 0.00 0.00 0.00 2.52
2183 2280 0.321996 AAGCCCTCCGTCTGTTTCTC 59.678 55.000 0.00 0.00 0.00 2.87
2184 2281 1.079057 GCCCTCCGTCTGTTTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
2185 2282 1.597461 CCCTCCGTCTGTTTCTCCC 59.403 63.158 0.00 0.00 0.00 4.30
2186 2283 0.905337 CCCTCCGTCTGTTTCTCCCT 60.905 60.000 0.00 0.00 0.00 4.20
2187 2284 0.977395 CCTCCGTCTGTTTCTCCCTT 59.023 55.000 0.00 0.00 0.00 3.95
2188 2285 1.066787 CCTCCGTCTGTTTCTCCCTTC 60.067 57.143 0.00 0.00 0.00 3.46
2189 2286 1.896465 CTCCGTCTGTTTCTCCCTTCT 59.104 52.381 0.00 0.00 0.00 2.85
2190 2287 3.090037 CTCCGTCTGTTTCTCCCTTCTA 58.910 50.000 0.00 0.00 0.00 2.10
2191 2288 3.090037 TCCGTCTGTTTCTCCCTTCTAG 58.910 50.000 0.00 0.00 0.00 2.43
2192 2289 2.417515 CCGTCTGTTTCTCCCTTCTAGC 60.418 54.545 0.00 0.00 0.00 3.42
2193 2290 2.732597 CGTCTGTTTCTCCCTTCTAGCG 60.733 54.545 0.00 0.00 0.00 4.26
2194 2291 2.492484 GTCTGTTTCTCCCTTCTAGCGA 59.508 50.000 0.00 0.00 0.00 4.93
2195 2292 3.056749 GTCTGTTTCTCCCTTCTAGCGAA 60.057 47.826 0.00 0.00 0.00 4.70
2196 2293 3.576982 TCTGTTTCTCCCTTCTAGCGAAA 59.423 43.478 0.00 0.00 0.00 3.46
2197 2294 4.223032 TCTGTTTCTCCCTTCTAGCGAAAT 59.777 41.667 0.00 0.00 0.00 2.17
2198 2295 4.504858 TGTTTCTCCCTTCTAGCGAAATC 58.495 43.478 0.00 0.00 0.00 2.17
2199 2296 3.438297 TTCTCCCTTCTAGCGAAATCG 57.562 47.619 0.00 0.00 43.27 3.34
2200 2297 2.651455 TCTCCCTTCTAGCGAAATCGA 58.349 47.619 7.06 0.00 43.02 3.59
2201 2298 2.358267 TCTCCCTTCTAGCGAAATCGAC 59.642 50.000 7.06 0.00 43.02 4.20
2202 2299 2.359531 CTCCCTTCTAGCGAAATCGACT 59.640 50.000 7.06 6.06 43.02 4.18
2203 2300 2.758979 TCCCTTCTAGCGAAATCGACTT 59.241 45.455 7.06 0.00 43.02 3.01
2204 2301 2.860735 CCCTTCTAGCGAAATCGACTTG 59.139 50.000 7.06 4.97 43.02 3.16
2205 2302 3.428999 CCCTTCTAGCGAAATCGACTTGA 60.429 47.826 7.06 7.06 43.02 3.02
2206 2303 3.548268 CCTTCTAGCGAAATCGACTTGAC 59.452 47.826 7.06 0.00 43.02 3.18
2207 2304 3.146618 TCTAGCGAAATCGACTTGACC 57.853 47.619 7.06 0.00 43.02 4.02
2208 2305 2.159282 TCTAGCGAAATCGACTTGACCC 60.159 50.000 7.06 0.00 43.02 4.46
2209 2306 0.320374 AGCGAAATCGACTTGACCCA 59.680 50.000 7.06 0.00 43.02 4.51
2210 2307 1.153353 GCGAAATCGACTTGACCCAA 58.847 50.000 7.06 0.00 43.02 4.12
2211 2308 1.533731 GCGAAATCGACTTGACCCAAA 59.466 47.619 7.06 0.00 43.02 3.28
2212 2309 2.161609 GCGAAATCGACTTGACCCAAAT 59.838 45.455 7.06 0.00 43.02 2.32
2213 2310 3.365969 GCGAAATCGACTTGACCCAAATT 60.366 43.478 7.06 0.00 43.02 1.82
2214 2311 4.403453 CGAAATCGACTTGACCCAAATTC 58.597 43.478 0.00 0.00 43.02 2.17
2215 2312 4.083537 CGAAATCGACTTGACCCAAATTCA 60.084 41.667 0.00 0.00 43.02 2.57
2216 2313 5.391950 CGAAATCGACTTGACCCAAATTCAT 60.392 40.000 0.00 0.00 43.02 2.57
2217 2314 6.183360 CGAAATCGACTTGACCCAAATTCATA 60.183 38.462 0.00 0.00 43.02 2.15
2218 2315 7.461182 AAATCGACTTGACCCAAATTCATAA 57.539 32.000 0.00 0.00 0.00 1.90
2219 2316 6.683974 ATCGACTTGACCCAAATTCATAAG 57.316 37.500 0.00 0.00 0.00 1.73
2220 2317 5.556915 TCGACTTGACCCAAATTCATAAGT 58.443 37.500 0.00 0.00 0.00 2.24
2221 2318 5.642063 TCGACTTGACCCAAATTCATAAGTC 59.358 40.000 0.00 0.00 39.21 3.01
2222 2319 5.411361 CGACTTGACCCAAATTCATAAGTCA 59.589 40.000 0.00 0.00 41.37 3.41
2223 2320 6.402550 CGACTTGACCCAAATTCATAAGTCAG 60.403 42.308 0.00 0.00 41.37 3.51
2224 2321 5.711976 ACTTGACCCAAATTCATAAGTCAGG 59.288 40.000 0.00 0.00 37.36 3.86
2225 2322 4.016444 TGACCCAAATTCATAAGTCAGGC 58.984 43.478 0.00 0.00 31.10 4.85
2226 2323 3.016736 ACCCAAATTCATAAGTCAGGCG 58.983 45.455 0.00 0.00 0.00 5.52
2227 2324 3.278574 CCCAAATTCATAAGTCAGGCGA 58.721 45.455 0.00 0.00 0.00 5.54
2228 2325 3.065371 CCCAAATTCATAAGTCAGGCGAC 59.935 47.826 0.00 1.99 42.95 5.19
2239 2336 3.696084 AGGCGACTGACCTGTACC 58.304 61.111 0.00 0.00 41.13 3.34
2240 2337 1.076906 AGGCGACTGACCTGTACCT 59.923 57.895 0.00 0.00 41.13 3.08
2241 2338 0.330604 AGGCGACTGACCTGTACCTA 59.669 55.000 0.00 0.00 41.13 3.08
2242 2339 1.063867 AGGCGACTGACCTGTACCTAT 60.064 52.381 0.00 0.00 41.13 2.57
2243 2340 1.755380 GGCGACTGACCTGTACCTATT 59.245 52.381 0.00 0.00 0.00 1.73
2244 2341 2.481449 GGCGACTGACCTGTACCTATTG 60.481 54.545 0.00 0.00 0.00 1.90
2245 2342 2.810650 CGACTGACCTGTACCTATTGC 58.189 52.381 0.00 0.00 0.00 3.56
2298 2395 7.475771 TTTTGTTTATTGAAGTGCACAATCC 57.524 32.000 21.04 5.26 38.61 3.01
2300 2397 3.485947 TTATTGAAGTGCACAATCCGC 57.514 42.857 21.04 1.76 38.61 5.54
2383 2480 1.559219 GGGCCAAATAAAATGCAGGGT 59.441 47.619 4.39 0.00 0.00 4.34
2388 2485 4.518590 GCCAAATAAAATGCAGGGTGTTTT 59.481 37.500 0.00 0.00 0.00 2.43
2456 2553 1.668151 GAGTGGTCTCCGTTGTGCC 60.668 63.158 0.00 0.00 34.87 5.01
2618 2723 2.230660 GTAGGTGGCTCTTTTTGTGCT 58.769 47.619 0.00 0.00 35.67 4.40
2619 2724 1.780503 AGGTGGCTCTTTTTGTGCTT 58.219 45.000 0.00 0.00 35.67 3.91
2669 2781 4.020218 TCCATCTACTTGGTTGGTTGAGAG 60.020 45.833 0.00 0.00 38.01 3.20
2682 2794 2.535331 GTTGAGAGCTTGAGATCGTCC 58.465 52.381 0.00 0.00 35.26 4.79
2683 2795 0.735471 TGAGAGCTTGAGATCGTCCG 59.265 55.000 0.00 0.00 35.26 4.79
2684 2796 0.736053 GAGAGCTTGAGATCGTCCGT 59.264 55.000 0.00 0.00 35.26 4.69
2685 2797 0.736053 AGAGCTTGAGATCGTCCGTC 59.264 55.000 0.00 0.00 35.26 4.79
2818 2931 7.878621 TCCTGATCCTACAAATATCCAATCT 57.121 36.000 0.00 0.00 0.00 2.40
2819 2932 7.911651 TCCTGATCCTACAAATATCCAATCTC 58.088 38.462 0.00 0.00 0.00 2.75
2821 2934 7.823310 CCTGATCCTACAAATATCCAATCTCAG 59.177 40.741 0.00 0.00 0.00 3.35
2823 2936 8.937835 TGATCCTACAAATATCCAATCTCAGAA 58.062 33.333 0.00 0.00 0.00 3.02
2885 2998 8.387354 GTTTTAACTTTGAAGTGAACCAAATGG 58.613 33.333 0.00 0.00 39.66 3.16
2906 3019 1.769098 CGCACATGGATCGCTGAAGG 61.769 60.000 0.00 0.00 0.00 3.46
2920 3033 0.599060 TGAAGGTCGACACATGCGTA 59.401 50.000 18.91 0.00 0.00 4.42
3015 3129 2.158449 CGAACAGCATCTTTCAGGTCAC 59.842 50.000 0.00 0.00 0.00 3.67
3048 3173 6.575254 GCCCACTCCATAAGTAATCTAGATGG 60.575 46.154 5.86 2.82 38.04 3.51
3240 3408 2.699212 CTAAACGGTAAGCGCGCC 59.301 61.111 30.33 13.04 0.00 6.53
3242 3410 2.020836 CTAAACGGTAAGCGCGCCTG 62.021 60.000 30.33 20.16 0.00 4.85
3262 3434 2.221169 GTGCATTTCGGCTGGATCATA 58.779 47.619 0.00 0.00 34.04 2.15
3264 3436 2.880268 TGCATTTCGGCTGGATCATAAG 59.120 45.455 0.00 0.00 34.04 1.73
3295 3473 1.347817 GCTGACTGAGTAGCGTGTGC 61.348 60.000 0.00 0.00 43.24 4.57
3296 3474 0.734253 CTGACTGAGTAGCGTGTGCC 60.734 60.000 0.00 0.00 44.31 5.01
3297 3475 1.801913 GACTGAGTAGCGTGTGCCG 60.802 63.158 0.00 0.00 44.31 5.69
3298 3476 2.258591 CTGAGTAGCGTGTGCCGT 59.741 61.111 0.00 0.00 44.31 5.68
3299 3477 2.049526 TGAGTAGCGTGTGCCGTG 60.050 61.111 0.00 0.00 44.31 4.94
3300 3478 2.049433 GAGTAGCGTGTGCCGTGT 60.049 61.111 0.00 0.00 44.31 4.49
3301 3479 2.355837 AGTAGCGTGTGCCGTGTG 60.356 61.111 0.00 0.00 44.31 3.82
3302 3480 3.411351 GTAGCGTGTGCCGTGTGG 61.411 66.667 0.00 0.00 44.31 4.17
3303 3481 3.918977 TAGCGTGTGCCGTGTGGT 61.919 61.111 0.00 0.00 44.31 4.16
3304 3482 2.562876 TAGCGTGTGCCGTGTGGTA 61.563 57.895 0.00 0.00 44.31 3.25
3305 3483 2.480853 TAGCGTGTGCCGTGTGGTAG 62.481 60.000 0.00 0.00 44.31 3.18
3306 3484 3.411351 CGTGTGCCGTGTGGTAGC 61.411 66.667 0.00 0.00 37.67 3.58
3496 3677 4.333372 TCGTTTCCGTTTCTGTTTAAAGCT 59.667 37.500 0.00 0.00 35.01 3.74
3498 3679 5.575019 GTTTCCGTTTCTGTTTAAAGCTCA 58.425 37.500 0.00 0.00 0.00 4.26
3524 3709 8.654997 ACTCACACTAATCATATGGCTTATCTT 58.345 33.333 2.13 0.00 0.00 2.40
3771 4015 4.072088 CACGTTCGGGTGCGCTTC 62.072 66.667 9.73 1.18 0.00 3.86
3772 4016 4.595538 ACGTTCGGGTGCGCTTCA 62.596 61.111 9.73 0.00 0.00 3.02
3773 4017 3.777925 CGTTCGGGTGCGCTTCAG 61.778 66.667 9.73 1.32 0.00 3.02
3774 4018 4.090057 GTTCGGGTGCGCTTCAGC 62.090 66.667 9.73 0.00 42.24 4.26
3775 4019 4.314440 TTCGGGTGCGCTTCAGCT 62.314 61.111 9.73 0.00 42.57 4.24
3778 4022 2.740714 CGGGTGCGCTTCAGCTAAC 61.741 63.158 9.73 0.00 42.57 2.34
3779 4023 1.671054 GGGTGCGCTTCAGCTAACA 60.671 57.895 9.73 0.00 42.57 2.41
3780 4024 1.026718 GGGTGCGCTTCAGCTAACAT 61.027 55.000 9.73 0.00 42.57 2.71
3781 4025 0.375106 GGTGCGCTTCAGCTAACATC 59.625 55.000 9.73 0.00 39.95 3.06
3782 4026 1.078709 GTGCGCTTCAGCTAACATCA 58.921 50.000 9.73 0.00 39.32 3.07
3783 4027 1.667724 GTGCGCTTCAGCTAACATCAT 59.332 47.619 9.73 0.00 39.32 2.45
3784 4028 2.866156 GTGCGCTTCAGCTAACATCATA 59.134 45.455 9.73 0.00 39.32 2.15
3786 4030 3.126831 GCGCTTCAGCTAACATCATACT 58.873 45.455 0.00 0.00 39.32 2.12
3787 4031 3.557595 GCGCTTCAGCTAACATCATACTT 59.442 43.478 0.00 0.00 39.32 2.24
3789 4033 5.447818 GCGCTTCAGCTAACATCATACTTTT 60.448 40.000 0.00 0.00 39.32 2.27
3791 4035 7.119997 CGCTTCAGCTAACATCATACTTTTAC 58.880 38.462 0.00 0.00 39.32 2.01
3792 4036 7.119997 GCTTCAGCTAACATCATACTTTTACG 58.880 38.462 0.00 0.00 38.21 3.18
3793 4037 6.583912 TCAGCTAACATCATACTTTTACGC 57.416 37.500 0.00 0.00 0.00 4.42
3794 4038 6.338146 TCAGCTAACATCATACTTTTACGCT 58.662 36.000 0.00 0.00 0.00 5.07
3797 4041 6.697892 AGCTAACATCATACTTTTACGCTCTC 59.302 38.462 0.00 0.00 0.00 3.20
3798 4042 6.697892 GCTAACATCATACTTTTACGCTCTCT 59.302 38.462 0.00 0.00 0.00 3.10
3799 4043 6.893958 AACATCATACTTTTACGCTCTCTG 57.106 37.500 0.00 0.00 0.00 3.35
3808 4052 1.300481 TACGCTCTCTGATCACTCGG 58.700 55.000 0.00 0.00 0.00 4.63
3811 4055 1.135257 CGCTCTCTGATCACTCGGTTT 60.135 52.381 0.00 0.00 0.00 3.27
3814 4058 3.735514 GCTCTCTGATCACTCGGTTTACC 60.736 52.174 0.00 0.00 0.00 2.85
3845 4089 4.713792 AAAAAGGAGAAGAAGGCTCTGA 57.286 40.909 0.00 0.00 32.98 3.27
3846 4090 4.713792 AAAAGGAGAAGAAGGCTCTGAA 57.286 40.909 0.00 0.00 32.98 3.02
3847 4091 3.694043 AAGGAGAAGAAGGCTCTGAAC 57.306 47.619 0.00 0.00 32.98 3.18
3848 4092 1.548269 AGGAGAAGAAGGCTCTGAACG 59.452 52.381 0.00 0.00 32.98 3.95
3849 4093 1.273886 GGAGAAGAAGGCTCTGAACGT 59.726 52.381 0.00 0.00 32.98 3.99
3850 4094 2.289133 GGAGAAGAAGGCTCTGAACGTT 60.289 50.000 0.00 0.00 32.98 3.99
4296 4550 5.336770 GGAGGTGAATGAATCCTTGGTTTTC 60.337 44.000 0.00 0.00 0.00 2.29
4301 4555 6.143919 GTGAATGAATCCTTGGTTTTCGTTTC 59.856 38.462 11.06 10.54 30.77 2.78
4437 4691 2.959071 GAGATGAGGAGCGTGCGC 60.959 66.667 8.67 8.67 42.33 6.09
4467 4731 0.986527 GACTTTTTCTCCCCGGGGTA 59.013 55.000 38.73 25.25 36.47 3.69
4637 4901 7.565323 AAATAGAGAGATCATTGGTCTTTGC 57.435 36.000 0.00 0.00 0.00 3.68
4640 4904 3.876320 GAGAGATCATTGGTCTTTGCCTC 59.124 47.826 0.00 0.00 0.00 4.70
4725 5051 2.586079 CACCCCGTATGCAGCTCG 60.586 66.667 0.00 0.00 0.00 5.03
4733 5059 2.585845 CGTATGCAGCTCGTATGTAGG 58.414 52.381 0.00 0.00 0.00 3.18
4782 5109 0.668535 CACATCGGACAGATAGCGGA 59.331 55.000 0.00 0.00 37.52 5.54
4818 5145 1.960040 ATCGACATGCGCCTCCTTCA 61.960 55.000 4.18 0.00 40.61 3.02
4833 5160 2.561419 TCCTTCAGTTTAGGTGAGGACG 59.439 50.000 0.00 0.00 34.29 4.79
4837 5164 3.093814 TCAGTTTAGGTGAGGACGCATA 58.906 45.455 0.00 0.00 0.00 3.14
4848 5175 4.213482 GTGAGGACGCATAAACCAATATCC 59.787 45.833 0.00 0.00 0.00 2.59
4873 5200 7.334090 CCATAGCCTGTAATATGAAGTGCTAT 58.666 38.462 0.00 0.00 40.39 2.97
4883 5210 7.812690 AATATGAAGTGCTATCAAATGAGCA 57.187 32.000 0.00 0.00 46.24 4.26
4889 5216 3.293337 TGCTATCAAATGAGCAAGGCAT 58.707 40.909 0.00 0.00 45.47 4.40
4912 5239 3.880047 CGGGTTTACCTGTGTCTATGA 57.120 47.619 0.00 0.00 37.62 2.15
4913 5240 3.518590 CGGGTTTACCTGTGTCTATGAC 58.481 50.000 0.00 0.00 37.62 3.06
4914 5241 3.677976 CGGGTTTACCTGTGTCTATGACC 60.678 52.174 0.00 0.00 37.62 4.02
4915 5242 3.518303 GGGTTTACCTGTGTCTATGACCT 59.482 47.826 0.00 0.00 35.85 3.85
4916 5243 4.019591 GGGTTTACCTGTGTCTATGACCTT 60.020 45.833 0.00 0.00 35.85 3.50
4952 5279 5.774498 ACAAAAGATGTGGTCTCCTTTTC 57.226 39.130 0.00 0.00 41.93 2.29
4961 5288 3.895041 GTGGTCTCCTTTTCCATTTCCAA 59.105 43.478 0.00 0.00 33.68 3.53
4966 5293 5.011023 GTCTCCTTTTCCATTTCCAACACAT 59.989 40.000 0.00 0.00 0.00 3.21
4971 5298 9.094578 TCCTTTTCCATTTCCAACACATTATTA 57.905 29.630 0.00 0.00 0.00 0.98
4978 5305 8.184192 CCATTTCCAACACATTATTACTCACTC 58.816 37.037 0.00 0.00 0.00 3.51
5081 5408 7.488187 TCATTAGCTTTTCATGCTCATACTC 57.512 36.000 0.00 0.00 41.46 2.59
5141 5468 4.860907 GCATTGGTTCACAATCATCTTCAC 59.139 41.667 0.00 0.00 46.67 3.18
5155 5482 1.340248 TCTTCACTGGGTGTCTCGAAC 59.660 52.381 0.00 0.00 34.79 3.95
5170 5497 1.135489 TCGAACGATTCCACCTCGAAG 60.135 52.381 0.00 0.00 39.38 3.79
5202 5529 0.179000 CCTTCCTCGGGGTCTTCATG 59.821 60.000 0.00 0.00 0.00 3.07
5228 5555 5.897377 ATAACATTCCCACCTTTCTTTCG 57.103 39.130 0.00 0.00 0.00 3.46
5233 5560 3.518992 TCCCACCTTTCTTTCGGAATT 57.481 42.857 0.00 0.00 33.53 2.17
5265 5592 1.992170 AGCATACCGTTTGACGACTC 58.008 50.000 1.51 0.00 46.05 3.36
5276 5603 0.385098 TGACGACTCGTAGCACAACG 60.385 55.000 3.53 0.38 41.37 4.10
5278 5605 0.385223 ACGACTCGTAGCACAACGTC 60.385 55.000 1.16 0.00 43.31 4.34
5289 5616 1.003866 GCACAACGTCAAGGTCAAGAC 60.004 52.381 0.00 0.00 0.00 3.01
5291 5618 2.030457 CACAACGTCAAGGTCAAGACAC 59.970 50.000 2.29 0.00 34.48 3.67
5300 5627 4.946772 TCAAGGTCAAGACACACATTTTCA 59.053 37.500 2.29 0.00 0.00 2.69
5321 5648 2.347452 ACTCAATTTATCGGAACACGCG 59.653 45.455 3.53 3.53 43.86 6.01
5322 5649 1.661617 TCAATTTATCGGAACACGCGG 59.338 47.619 12.47 1.27 43.86 6.46
5349 5676 2.501723 TCTTGGTCTAGGCAAGATGGAC 59.498 50.000 0.00 0.00 36.36 4.02
5360 5687 4.280929 AGGCAAGATGGACAAGGTTTAAAC 59.719 41.667 9.98 9.98 0.00 2.01
5361 5688 4.038642 GGCAAGATGGACAAGGTTTAAACA 59.961 41.667 19.57 0.00 0.00 2.83
5388 5715 1.143073 GGGGTAACATGAGACCATCCC 59.857 57.143 18.39 9.68 37.47 3.85
5399 5726 5.191727 TGAGACCATCCCAAACATTATGT 57.808 39.130 0.00 0.00 0.00 2.29
5408 5735 5.268387 TCCCAAACATTATGTGGCAGTTAT 58.732 37.500 0.00 0.00 0.00 1.89
5411 5738 6.208644 CCAAACATTATGTGGCAGTTATAGC 58.791 40.000 0.00 0.00 0.00 2.97
5412 5739 6.183360 CCAAACATTATGTGGCAGTTATAGCA 60.183 38.462 0.00 0.00 0.00 3.49
5413 5740 7.428020 CAAACATTATGTGGCAGTTATAGCAT 58.572 34.615 0.00 0.00 0.00 3.79
5414 5741 6.808008 ACATTATGTGGCAGTTATAGCATC 57.192 37.500 0.00 0.00 0.00 3.91
5415 5742 6.537355 ACATTATGTGGCAGTTATAGCATCT 58.463 36.000 0.00 0.00 0.00 2.90
5416 5743 7.679783 ACATTATGTGGCAGTTATAGCATCTA 58.320 34.615 0.00 0.00 0.00 1.98
5417 5744 7.604164 ACATTATGTGGCAGTTATAGCATCTAC 59.396 37.037 0.00 0.00 0.00 2.59
5418 5745 5.551305 ATGTGGCAGTTATAGCATCTACA 57.449 39.130 0.00 1.53 0.00 2.74
5419 5746 4.948847 TGTGGCAGTTATAGCATCTACAG 58.051 43.478 0.00 0.00 0.00 2.74
5420 5747 3.743396 GTGGCAGTTATAGCATCTACAGC 59.257 47.826 0.00 0.00 0.00 4.40
5421 5748 3.244215 TGGCAGTTATAGCATCTACAGCC 60.244 47.826 0.00 0.00 41.78 4.85
5422 5749 2.989840 GCAGTTATAGCATCTACAGCCG 59.010 50.000 0.00 0.00 0.00 5.52
5423 5750 3.579709 CAGTTATAGCATCTACAGCCGG 58.420 50.000 0.00 0.00 0.00 6.13
5424 5751 3.255888 CAGTTATAGCATCTACAGCCGGA 59.744 47.826 5.05 0.00 0.00 5.14
5425 5752 3.256136 AGTTATAGCATCTACAGCCGGAC 59.744 47.826 5.05 0.00 0.00 4.79
5426 5753 1.704641 ATAGCATCTACAGCCGGACA 58.295 50.000 5.05 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 0.448593 AGCTCGCTTCTACAGTCGTC 59.551 55.000 0.00 0.00 0.00 4.20
68 70 2.088674 AACACGGACTTCAGCTCGCT 62.089 55.000 0.00 0.00 0.00 4.93
76 78 1.228657 GGTGAGGCAACACGGACTTC 61.229 60.000 8.30 0.00 41.12 3.01
80 82 0.817634 CTTTGGTGAGGCAACACGGA 60.818 55.000 8.30 0.00 41.12 4.69
93 95 3.683802 CTGATTTCAGCTCTCCTTTGGT 58.316 45.455 0.00 0.00 37.15 3.67
128 142 9.897744 CAATCTGAAACACACAAACAATATACT 57.102 29.630 0.00 0.00 0.00 2.12
131 145 8.196771 ACACAATCTGAAACACACAAACAATAT 58.803 29.630 0.00 0.00 0.00 1.28
142 156 2.100584 TGCCCAACACAATCTGAAACAC 59.899 45.455 0.00 0.00 0.00 3.32
143 157 2.361757 CTGCCCAACACAATCTGAAACA 59.638 45.455 0.00 0.00 0.00 2.83
146 160 1.955778 CACTGCCCAACACAATCTGAA 59.044 47.619 0.00 0.00 0.00 3.02
147 161 1.133823 ACACTGCCCAACACAATCTGA 60.134 47.619 0.00 0.00 0.00 3.27
148 162 1.321474 ACACTGCCCAACACAATCTG 58.679 50.000 0.00 0.00 0.00 2.90
149 163 2.158682 TGTACACTGCCCAACACAATCT 60.159 45.455 0.00 0.00 0.00 2.40
150 164 2.226330 TGTACACTGCCCAACACAATC 58.774 47.619 0.00 0.00 0.00 2.67
151 165 2.356665 TGTACACTGCCCAACACAAT 57.643 45.000 0.00 0.00 0.00 2.71
152 166 1.952990 CATGTACACTGCCCAACACAA 59.047 47.619 0.00 0.00 0.00 3.33
153 167 1.603456 CATGTACACTGCCCAACACA 58.397 50.000 0.00 0.00 0.00 3.72
154 168 0.240945 GCATGTACACTGCCCAACAC 59.759 55.000 15.31 0.00 33.44 3.32
155 169 0.179006 TGCATGTACACTGCCCAACA 60.179 50.000 20.37 5.83 38.89 3.33
156 170 1.135315 CATGCATGTACACTGCCCAAC 60.135 52.381 18.91 2.31 38.89 3.77
157 171 1.175654 CATGCATGTACACTGCCCAA 58.824 50.000 18.91 8.60 38.89 4.12
158 172 0.680601 CCATGCATGTACACTGCCCA 60.681 55.000 24.58 9.12 38.89 5.36
159 173 0.394216 TCCATGCATGTACACTGCCC 60.394 55.000 24.58 1.88 38.89 5.36
160 174 1.019673 CTCCATGCATGTACACTGCC 58.980 55.000 24.58 8.96 38.89 4.85
161 175 1.019673 CCTCCATGCATGTACACTGC 58.980 55.000 24.58 17.91 40.10 4.40
162 176 2.696989 TCCTCCATGCATGTACACTG 57.303 50.000 24.58 8.85 0.00 3.66
163 177 3.719268 TTTCCTCCATGCATGTACACT 57.281 42.857 24.58 0.00 0.00 3.55
164 178 4.782019 TTTTTCCTCCATGCATGTACAC 57.218 40.909 24.58 0.00 0.00 2.90
165 179 5.948758 TGTATTTTTCCTCCATGCATGTACA 59.051 36.000 24.58 18.40 0.00 2.90
166 180 6.449635 TGTATTTTTCCTCCATGCATGTAC 57.550 37.500 24.58 16.28 0.00 2.90
167 181 7.658525 ATTGTATTTTTCCTCCATGCATGTA 57.341 32.000 24.58 9.02 0.00 2.29
168 182 5.999205 TTGTATTTTTCCTCCATGCATGT 57.001 34.783 24.58 5.95 0.00 3.21
169 183 7.042950 TGAATTGTATTTTTCCTCCATGCATG 58.957 34.615 20.19 20.19 0.00 4.06
170 184 7.185318 TGAATTGTATTTTTCCTCCATGCAT 57.815 32.000 0.00 0.00 0.00 3.96
171 185 6.602410 TGAATTGTATTTTTCCTCCATGCA 57.398 33.333 0.00 0.00 0.00 3.96
172 186 5.521372 GCTGAATTGTATTTTTCCTCCATGC 59.479 40.000 0.00 0.00 0.00 4.06
173 187 6.870769 AGCTGAATTGTATTTTTCCTCCATG 58.129 36.000 0.00 0.00 0.00 3.66
174 188 6.097412 GGAGCTGAATTGTATTTTTCCTCCAT 59.903 38.462 0.00 0.00 33.75 3.41
175 189 5.418840 GGAGCTGAATTGTATTTTTCCTCCA 59.581 40.000 0.00 0.00 33.75 3.86
176 190 5.418840 TGGAGCTGAATTGTATTTTTCCTCC 59.581 40.000 0.00 0.00 33.97 4.30
177 191 6.071952 TGTGGAGCTGAATTGTATTTTTCCTC 60.072 38.462 0.00 0.00 0.00 3.71
178 192 5.774690 TGTGGAGCTGAATTGTATTTTTCCT 59.225 36.000 0.00 0.00 0.00 3.36
179 193 5.863935 GTGTGGAGCTGAATTGTATTTTTCC 59.136 40.000 0.00 0.00 0.00 3.13
180 194 5.569059 CGTGTGGAGCTGAATTGTATTTTTC 59.431 40.000 0.00 0.00 0.00 2.29
181 195 5.460646 CGTGTGGAGCTGAATTGTATTTTT 58.539 37.500 0.00 0.00 0.00 1.94
182 196 4.082787 CCGTGTGGAGCTGAATTGTATTTT 60.083 41.667 0.00 0.00 37.49 1.82
183 197 3.440173 CCGTGTGGAGCTGAATTGTATTT 59.560 43.478 0.00 0.00 37.49 1.40
184 198 3.009723 CCGTGTGGAGCTGAATTGTATT 58.990 45.455 0.00 0.00 37.49 1.89
185 199 2.632377 CCGTGTGGAGCTGAATTGTAT 58.368 47.619 0.00 0.00 37.49 2.29
186 200 1.338674 CCCGTGTGGAGCTGAATTGTA 60.339 52.381 0.00 0.00 37.49 2.41
187 201 0.606401 CCCGTGTGGAGCTGAATTGT 60.606 55.000 0.00 0.00 37.49 2.71
188 202 0.606401 ACCCGTGTGGAGCTGAATTG 60.606 55.000 0.00 0.00 37.49 2.32
189 203 0.321653 GACCCGTGTGGAGCTGAATT 60.322 55.000 0.00 0.00 37.49 2.17
190 204 1.296715 GACCCGTGTGGAGCTGAAT 59.703 57.895 0.00 0.00 37.49 2.57
191 205 2.741092 GACCCGTGTGGAGCTGAA 59.259 61.111 0.00 0.00 37.49 3.02
192 206 3.311110 GGACCCGTGTGGAGCTGA 61.311 66.667 0.00 0.00 37.49 4.26
193 207 2.883828 AAGGACCCGTGTGGAGCTG 61.884 63.158 0.00 0.00 37.49 4.24
194 208 2.526873 AAGGACCCGTGTGGAGCT 60.527 61.111 0.00 0.00 37.49 4.09
195 209 2.185310 ATCAAGGACCCGTGTGGAGC 62.185 60.000 2.14 0.00 37.49 4.70
196 210 0.391661 CATCAAGGACCCGTGTGGAG 60.392 60.000 2.14 0.00 37.49 3.86
197 211 0.834261 TCATCAAGGACCCGTGTGGA 60.834 55.000 2.14 0.00 37.49 4.02
198 212 0.036164 TTCATCAAGGACCCGTGTGG 59.964 55.000 2.14 0.00 41.37 4.17
199 213 2.113860 ATTCATCAAGGACCCGTGTG 57.886 50.000 2.14 1.38 0.00 3.82
200 214 2.093128 GGTATTCATCAAGGACCCGTGT 60.093 50.000 2.14 0.00 0.00 4.49
201 215 2.093181 TGGTATTCATCAAGGACCCGTG 60.093 50.000 0.00 0.00 0.00 4.94
202 216 2.170607 CTGGTATTCATCAAGGACCCGT 59.829 50.000 0.00 0.00 0.00 5.28
203 217 2.838736 CTGGTATTCATCAAGGACCCG 58.161 52.381 0.00 0.00 0.00 5.28
204 218 2.576615 GCTGGTATTCATCAAGGACCC 58.423 52.381 0.00 0.00 0.00 4.46
205 219 2.213499 CGCTGGTATTCATCAAGGACC 58.787 52.381 0.00 0.00 0.00 4.46
206 220 2.213499 CCGCTGGTATTCATCAAGGAC 58.787 52.381 0.00 0.00 0.00 3.85
207 221 1.837439 ACCGCTGGTATTCATCAAGGA 59.163 47.619 0.00 0.00 32.11 3.36
208 222 2.213499 GACCGCTGGTATTCATCAAGG 58.787 52.381 0.09 0.00 35.25 3.61
209 223 1.860950 CGACCGCTGGTATTCATCAAG 59.139 52.381 0.09 0.00 35.25 3.02
210 224 1.206132 ACGACCGCTGGTATTCATCAA 59.794 47.619 0.09 0.00 35.25 2.57
231 245 3.969287 ACTCACACATGTCTACAGCAT 57.031 42.857 0.00 0.00 0.00 3.79
235 249 4.756135 TGTACGTACTCACACATGTCTACA 59.244 41.667 25.12 0.00 0.00 2.74
241 255 8.290325 AGATGTATATGTACGTACTCACACATG 58.710 37.037 26.33 0.00 33.78 3.21
317 342 1.076559 TGCCTCGGTCTATTCGGGA 60.077 57.895 0.00 0.00 0.00 5.14
350 376 4.162690 GCCCACCTTCGAGGCGAT 62.163 66.667 0.00 0.00 39.63 4.58
544 574 1.600663 CGTAGGCAGTTGCGATCTAGG 60.601 57.143 0.00 0.00 43.26 3.02
545 575 1.759994 CGTAGGCAGTTGCGATCTAG 58.240 55.000 0.00 0.00 43.26 2.43
546 576 0.248907 GCGTAGGCAGTTGCGATCTA 60.249 55.000 1.75 0.00 43.26 1.98
572 602 2.280457 GCGGCTGCAGATACCTCC 60.280 66.667 20.43 6.83 42.15 4.30
586 616 1.831343 GATTTACTGCTGCAATGCGG 58.169 50.000 10.16 10.16 44.34 5.69
607 637 0.991146 TAGGCAGCCACAATCTGGAA 59.009 50.000 15.80 0.00 43.95 3.53
645 675 0.179048 CCAGGTGTGTGAAGTGAGCA 60.179 55.000 0.00 0.00 0.00 4.26
729 761 6.565234 TCTGGAGATCGAGTCATTTAAGTTC 58.435 40.000 0.00 0.00 0.00 3.01
771 816 5.755861 CCGTCCCATTATTGTTTTTGTTTGT 59.244 36.000 0.00 0.00 0.00 2.83
899 945 1.382146 GGTGGTGGTATCGGAGGGA 60.382 63.158 0.00 0.00 0.00 4.20
902 948 1.261938 TGGTGGTGGTGGTATCGGAG 61.262 60.000 0.00 0.00 0.00 4.63
903 949 1.229241 TGGTGGTGGTGGTATCGGA 60.229 57.895 0.00 0.00 0.00 4.55
906 952 0.322187 GTGGTGGTGGTGGTGGTATC 60.322 60.000 0.00 0.00 0.00 2.24
907 953 1.765074 GTGGTGGTGGTGGTGGTAT 59.235 57.895 0.00 0.00 0.00 2.73
908 954 2.453812 GGTGGTGGTGGTGGTGGTA 61.454 63.158 0.00 0.00 0.00 3.25
1242 1300 1.139095 GACCTCGGCGTACTTCTGG 59.861 63.158 6.85 1.93 0.00 3.86
1509 1567 3.220999 CTTGACGGCGACCACCTCA 62.221 63.158 16.62 1.90 0.00 3.86
1576 1635 3.937706 CAGAGTAGAGCCCAATTCAACAG 59.062 47.826 0.00 0.00 0.00 3.16
1587 1646 1.405105 CAGAGCAGACAGAGTAGAGCC 59.595 57.143 0.00 0.00 0.00 4.70
1588 1647 1.202290 GCAGAGCAGACAGAGTAGAGC 60.202 57.143 0.00 0.00 0.00 4.09
1589 1648 2.368439 AGCAGAGCAGACAGAGTAGAG 58.632 52.381 0.00 0.00 0.00 2.43
1591 1650 2.477694 CGAAGCAGAGCAGACAGAGTAG 60.478 54.545 0.00 0.00 0.00 2.57
1592 1651 1.470494 CGAAGCAGAGCAGACAGAGTA 59.530 52.381 0.00 0.00 0.00 2.59
1593 1652 0.243365 CGAAGCAGAGCAGACAGAGT 59.757 55.000 0.00 0.00 0.00 3.24
1600 1659 1.347817 GGACGAACGAAGCAGAGCAG 61.348 60.000 0.14 0.00 0.00 4.24
1602 1661 0.944311 TTGGACGAACGAAGCAGAGC 60.944 55.000 0.14 0.00 0.00 4.09
1614 1673 2.036217 ACGTTTCTACCATGTTGGACGA 59.964 45.455 10.50 0.19 40.96 4.20
1616 1675 4.142966 GCTTACGTTTCTACCATGTTGGAC 60.143 45.833 0.00 0.00 40.96 4.02
1617 1676 3.998341 GCTTACGTTTCTACCATGTTGGA 59.002 43.478 0.00 0.00 40.96 3.53
1619 1678 4.451096 ACTGCTTACGTTTCTACCATGTTG 59.549 41.667 0.00 0.00 0.00 3.33
1688 1748 9.959721 AGACATGTACCATGTATTAACTTTTCT 57.040 29.630 9.67 0.00 31.52 2.52
1693 1753 7.769044 GGAACAGACATGTACCATGTATTAACT 59.231 37.037 9.67 0.65 39.29 2.24
1694 1754 7.012044 GGGAACAGACATGTACCATGTATTAAC 59.988 40.741 9.67 0.00 39.29 2.01
1696 1756 6.385759 AGGGAACAGACATGTACCATGTATTA 59.614 38.462 9.67 0.00 39.29 0.98
1698 1758 4.721776 AGGGAACAGACATGTACCATGTAT 59.278 41.667 9.67 4.36 39.29 2.29
1703 1763 2.708861 ACAAGGGAACAGACATGTACCA 59.291 45.455 0.00 0.00 39.29 3.25
1705 1765 5.148651 AGTACAAGGGAACAGACATGTAC 57.851 43.478 0.00 5.90 39.29 2.90
1734 1794 1.405821 GAGCTACCGCACTGATACAGT 59.594 52.381 0.00 0.00 46.51 3.55
1735 1795 1.598183 CGAGCTACCGCACTGATACAG 60.598 57.143 0.00 0.00 39.10 2.74
1736 1796 0.380733 CGAGCTACCGCACTGATACA 59.619 55.000 0.00 0.00 39.10 2.29
1737 1797 0.317938 CCGAGCTACCGCACTGATAC 60.318 60.000 0.00 0.00 39.10 2.24
1738 1798 1.452953 CCCGAGCTACCGCACTGATA 61.453 60.000 0.00 0.00 39.10 2.15
1739 1799 2.786495 CCCGAGCTACCGCACTGAT 61.786 63.158 0.00 0.00 39.10 2.90
1740 1800 3.449227 CCCGAGCTACCGCACTGA 61.449 66.667 0.00 0.00 39.10 3.41
1758 1818 7.116233 GCTTTAACCCATTCACACATTTACTTG 59.884 37.037 0.00 0.00 0.00 3.16
1788 1848 4.342951 GGTACATGGCCACATACAGTACTA 59.657 45.833 23.27 0.00 35.73 1.82
1947 2032 4.823989 ACTTAACAGAAGCATGCAAGTTCT 59.176 37.500 21.98 17.02 29.25 3.01
1995 2088 1.888512 TGTGGAAGCAAAAGCATCTCC 59.111 47.619 0.00 0.00 0.00 3.71
2034 2127 3.118531 ACTAATGGAGACCAAGCCAGAT 58.881 45.455 0.00 0.00 36.95 2.90
2157 2254 1.401905 CAGACGGAGGGCTTATTTTGC 59.598 52.381 0.00 0.00 0.00 3.68
2158 2255 2.711542 ACAGACGGAGGGCTTATTTTG 58.288 47.619 0.00 0.00 0.00 2.44
2159 2256 3.434940 AACAGACGGAGGGCTTATTTT 57.565 42.857 0.00 0.00 0.00 1.82
2160 2257 3.009143 AGAAACAGACGGAGGGCTTATTT 59.991 43.478 0.00 0.00 0.00 1.40
2161 2258 2.572104 AGAAACAGACGGAGGGCTTATT 59.428 45.455 0.00 0.00 0.00 1.40
2162 2259 2.168728 GAGAAACAGACGGAGGGCTTAT 59.831 50.000 0.00 0.00 0.00 1.73
2163 2260 1.549170 GAGAAACAGACGGAGGGCTTA 59.451 52.381 0.00 0.00 0.00 3.09
2164 2261 0.321996 GAGAAACAGACGGAGGGCTT 59.678 55.000 0.00 0.00 0.00 4.35
2165 2262 1.545706 GGAGAAACAGACGGAGGGCT 61.546 60.000 0.00 0.00 0.00 5.19
2166 2263 1.079057 GGAGAAACAGACGGAGGGC 60.079 63.158 0.00 0.00 0.00 5.19
2167 2264 0.905337 AGGGAGAAACAGACGGAGGG 60.905 60.000 0.00 0.00 0.00 4.30
2168 2265 0.977395 AAGGGAGAAACAGACGGAGG 59.023 55.000 0.00 0.00 0.00 4.30
2169 2266 1.896465 AGAAGGGAGAAACAGACGGAG 59.104 52.381 0.00 0.00 0.00 4.63
2170 2267 2.011122 AGAAGGGAGAAACAGACGGA 57.989 50.000 0.00 0.00 0.00 4.69
2171 2268 2.417515 GCTAGAAGGGAGAAACAGACGG 60.418 54.545 0.00 0.00 0.00 4.79
2172 2269 2.732597 CGCTAGAAGGGAGAAACAGACG 60.733 54.545 0.00 0.00 0.00 4.18
2173 2270 2.492484 TCGCTAGAAGGGAGAAACAGAC 59.508 50.000 0.00 0.00 31.82 3.51
2174 2271 2.803956 TCGCTAGAAGGGAGAAACAGA 58.196 47.619 0.00 0.00 31.82 3.41
2175 2272 3.594603 TTCGCTAGAAGGGAGAAACAG 57.405 47.619 0.00 0.00 38.45 3.16
2176 2273 4.504858 GATTTCGCTAGAAGGGAGAAACA 58.495 43.478 0.00 0.00 38.45 2.83
2177 2274 3.552294 CGATTTCGCTAGAAGGGAGAAAC 59.448 47.826 0.00 0.00 38.45 2.78
2178 2275 3.446161 TCGATTTCGCTAGAAGGGAGAAA 59.554 43.478 0.00 0.00 38.45 2.52
2179 2276 3.021695 TCGATTTCGCTAGAAGGGAGAA 58.978 45.455 0.00 0.00 38.45 2.87
2180 2277 2.358267 GTCGATTTCGCTAGAAGGGAGA 59.642 50.000 0.00 0.00 38.45 3.71
2181 2278 2.359531 AGTCGATTTCGCTAGAAGGGAG 59.640 50.000 0.00 0.00 38.45 4.30
2182 2279 2.376109 AGTCGATTTCGCTAGAAGGGA 58.624 47.619 0.00 0.00 37.70 4.20
2183 2280 2.860735 CAAGTCGATTTCGCTAGAAGGG 59.139 50.000 0.00 0.00 37.70 3.95
2184 2281 3.548268 GTCAAGTCGATTTCGCTAGAAGG 59.452 47.826 0.00 0.00 37.70 3.46
2185 2282 3.548268 GGTCAAGTCGATTTCGCTAGAAG 59.452 47.826 0.00 0.00 37.70 2.85
2186 2283 3.508762 GGTCAAGTCGATTTCGCTAGAA 58.491 45.455 0.00 0.00 39.60 2.10
2187 2284 2.159282 GGGTCAAGTCGATTTCGCTAGA 60.159 50.000 0.00 0.00 39.60 2.43
2188 2285 2.194271 GGGTCAAGTCGATTTCGCTAG 58.806 52.381 0.00 0.00 39.60 3.42
2189 2286 1.546923 TGGGTCAAGTCGATTTCGCTA 59.453 47.619 0.00 0.00 39.60 4.26
2190 2287 0.320374 TGGGTCAAGTCGATTTCGCT 59.680 50.000 0.00 0.00 39.60 4.93
2191 2288 1.153353 TTGGGTCAAGTCGATTTCGC 58.847 50.000 0.00 0.00 39.60 4.70
2192 2289 4.083537 TGAATTTGGGTCAAGTCGATTTCG 60.084 41.667 0.00 0.00 41.45 3.46
2193 2290 5.371115 TGAATTTGGGTCAAGTCGATTTC 57.629 39.130 0.00 0.00 0.00 2.17
2194 2291 5.982890 ATGAATTTGGGTCAAGTCGATTT 57.017 34.783 0.00 0.00 0.00 2.17
2195 2292 6.659242 ACTTATGAATTTGGGTCAAGTCGATT 59.341 34.615 0.00 0.00 0.00 3.34
2196 2293 6.180472 ACTTATGAATTTGGGTCAAGTCGAT 58.820 36.000 0.00 0.00 0.00 3.59
2197 2294 5.556915 ACTTATGAATTTGGGTCAAGTCGA 58.443 37.500 0.00 0.00 0.00 4.20
2198 2295 5.411361 TGACTTATGAATTTGGGTCAAGTCG 59.589 40.000 0.00 0.00 36.38 4.18
2199 2296 6.127897 CCTGACTTATGAATTTGGGTCAAGTC 60.128 42.308 0.00 0.00 35.10 3.01
2200 2297 5.711976 CCTGACTTATGAATTTGGGTCAAGT 59.288 40.000 0.00 0.00 34.11 3.16
2201 2298 5.393461 GCCTGACTTATGAATTTGGGTCAAG 60.393 44.000 0.00 0.00 34.11 3.02
2202 2299 4.462483 GCCTGACTTATGAATTTGGGTCAA 59.538 41.667 0.00 0.00 34.11 3.18
2203 2300 4.016444 GCCTGACTTATGAATTTGGGTCA 58.984 43.478 0.00 0.00 33.56 4.02
2204 2301 3.065371 CGCCTGACTTATGAATTTGGGTC 59.935 47.826 0.00 0.00 0.00 4.46
2205 2302 3.016736 CGCCTGACTTATGAATTTGGGT 58.983 45.455 0.00 0.00 0.00 4.51
2206 2303 3.065371 GTCGCCTGACTTATGAATTTGGG 59.935 47.826 0.00 0.00 42.08 4.12
2207 2304 4.278678 GTCGCCTGACTTATGAATTTGG 57.721 45.455 0.00 0.00 42.08 3.28
2222 2319 0.330604 TAGGTACAGGTCAGTCGCCT 59.669 55.000 0.00 0.00 36.66 5.52
2223 2320 1.400737 ATAGGTACAGGTCAGTCGCC 58.599 55.000 0.00 0.00 0.00 5.54
2224 2321 2.810650 CAATAGGTACAGGTCAGTCGC 58.189 52.381 0.00 0.00 0.00 5.19
2225 2322 2.794981 CGCAATAGGTACAGGTCAGTCG 60.795 54.545 0.00 0.00 0.00 4.18
2226 2323 2.481449 CCGCAATAGGTACAGGTCAGTC 60.481 54.545 0.00 0.00 0.00 3.51
2227 2324 1.480954 CCGCAATAGGTACAGGTCAGT 59.519 52.381 0.00 0.00 0.00 3.41
2228 2325 1.806623 GCCGCAATAGGTACAGGTCAG 60.807 57.143 0.00 0.00 0.00 3.51
2229 2326 0.177141 GCCGCAATAGGTACAGGTCA 59.823 55.000 0.00 0.00 0.00 4.02
2230 2327 0.177141 TGCCGCAATAGGTACAGGTC 59.823 55.000 0.00 0.00 0.00 3.85
2231 2328 0.616371 TTGCCGCAATAGGTACAGGT 59.384 50.000 0.38 0.00 0.00 4.00
2232 2329 1.745232 TTTGCCGCAATAGGTACAGG 58.255 50.000 6.64 0.00 0.00 4.00
2233 2330 5.493133 TTATTTTGCCGCAATAGGTACAG 57.507 39.130 6.64 0.00 0.00 2.74
2234 2331 5.416326 AGTTTATTTTGCCGCAATAGGTACA 59.584 36.000 6.64 0.00 0.00 2.90
2235 2332 5.886992 AGTTTATTTTGCCGCAATAGGTAC 58.113 37.500 6.64 3.70 0.00 3.34
2236 2333 6.071840 ACAAGTTTATTTTGCCGCAATAGGTA 60.072 34.615 6.64 0.00 0.00 3.08
2237 2334 5.167845 CAAGTTTATTTTGCCGCAATAGGT 58.832 37.500 6.64 0.00 0.00 3.08
2238 2335 5.062058 CACAAGTTTATTTTGCCGCAATAGG 59.938 40.000 6.64 0.00 0.00 2.57
2239 2336 5.062058 CCACAAGTTTATTTTGCCGCAATAG 59.938 40.000 6.64 0.00 0.00 1.73
2240 2337 4.926238 CCACAAGTTTATTTTGCCGCAATA 59.074 37.500 6.64 2.24 0.00 1.90
2241 2338 3.745458 CCACAAGTTTATTTTGCCGCAAT 59.255 39.130 6.64 0.00 0.00 3.56
2242 2339 3.126831 CCACAAGTTTATTTTGCCGCAA 58.873 40.909 0.38 0.38 0.00 4.85
2243 2340 2.748605 CCACAAGTTTATTTTGCCGCA 58.251 42.857 0.00 0.00 0.00 5.69
2244 2341 1.459209 GCCACAAGTTTATTTTGCCGC 59.541 47.619 0.00 0.00 0.00 6.53
2245 2342 2.748605 TGCCACAAGTTTATTTTGCCG 58.251 42.857 0.00 0.00 0.00 5.69
2281 2378 1.742831 GGCGGATTGTGCACTTCAATA 59.257 47.619 19.41 0.00 35.94 1.90
2298 2395 9.398170 CATAAATGATAATCTTAACAAAGGGCG 57.602 33.333 0.00 0.00 0.00 6.13
2300 2397 9.696917 GGCATAAATGATAATCTTAACAAAGGG 57.303 33.333 0.00 0.00 0.00 3.95
2355 2452 4.423732 CATTTTATTTGGCCCTTGAGTCG 58.576 43.478 0.00 0.00 0.00 4.18
2440 2537 2.424705 TACGGCACAACGGAGACCAC 62.425 60.000 0.00 0.00 38.39 4.16
2456 2553 7.837202 TTAATTTGGTTCACAGGAGTATACG 57.163 36.000 0.00 0.00 0.00 3.06
2669 2781 1.586564 CGGACGGACGATCTCAAGC 60.587 63.158 0.00 0.00 35.47 4.01
2819 2932 9.347934 GCACATACTACTACTGCTATATTTCTG 57.652 37.037 0.00 0.00 0.00 3.02
2821 2934 8.304596 TGGCACATACTACTACTGCTATATTTC 58.695 37.037 0.00 0.00 0.00 2.17
2823 2936 7.776618 TGGCACATACTACTACTGCTATATT 57.223 36.000 0.00 0.00 0.00 1.28
2885 2998 1.083806 TTCAGCGATCCATGTGCGTC 61.084 55.000 0.00 0.00 0.00 5.19
2906 3019 0.093026 GCTGTTACGCATGTGTCGAC 59.907 55.000 16.65 15.78 0.00 4.20
2920 3033 2.172717 AGGGATATTTACGGCTGCTGTT 59.827 45.455 20.58 4.36 0.00 3.16
3015 3129 2.079170 TATGGAGTGGGCTCTCTGAG 57.921 55.000 0.00 0.00 41.38 3.35
3068 3236 7.994425 TCAACATCCTGCTTGTTAATAAGAA 57.006 32.000 15.41 4.33 35.61 2.52
3240 3408 0.379669 GATCCAGCCGAAATGCACAG 59.620 55.000 0.00 0.00 0.00 3.66
3242 3410 1.027357 ATGATCCAGCCGAAATGCAC 58.973 50.000 0.00 0.00 0.00 4.57
3262 3434 1.423161 AGTCAGCTGCCTTTCTTCCTT 59.577 47.619 9.47 0.00 0.00 3.36
3264 3436 1.163554 CAGTCAGCTGCCTTTCTTCC 58.836 55.000 9.47 0.00 35.77 3.46
3295 3473 1.533338 CGTTAGCTAGCTACCACACGG 60.533 57.143 27.54 15.46 38.77 4.94
3296 3474 1.823828 CGTTAGCTAGCTACCACACG 58.176 55.000 24.09 24.28 0.00 4.49
3297 3475 1.557651 GCGTTAGCTAGCTACCACAC 58.442 55.000 24.09 17.46 41.01 3.82
3298 3476 0.458669 GGCGTTAGCTAGCTACCACA 59.541 55.000 24.09 6.87 44.37 4.17
3299 3477 0.458669 TGGCGTTAGCTAGCTACCAC 59.541 55.000 24.09 18.50 44.37 4.16
3300 3478 1.340248 GATGGCGTTAGCTAGCTACCA 59.660 52.381 26.27 26.27 44.37 3.25
3301 3479 1.340248 TGATGGCGTTAGCTAGCTACC 59.660 52.381 24.09 20.93 41.02 3.18
3302 3480 2.795175 TGATGGCGTTAGCTAGCTAC 57.205 50.000 24.09 16.88 41.02 3.58
3303 3481 2.890945 TGATGATGGCGTTAGCTAGCTA 59.109 45.455 20.67 20.67 41.02 3.32
3304 3482 1.688735 TGATGATGGCGTTAGCTAGCT 59.311 47.619 23.12 23.12 41.02 3.32
3305 3483 2.154854 TGATGATGGCGTTAGCTAGC 57.845 50.000 6.62 6.62 44.37 3.42
3306 3484 3.677121 GTGATGATGATGGCGTTAGCTAG 59.323 47.826 0.00 0.00 44.37 3.42
3496 3677 5.876651 AGCCATATGATTAGTGTGAGTGA 57.123 39.130 3.65 0.00 0.00 3.41
3498 3679 8.200024 AGATAAGCCATATGATTAGTGTGAGT 57.800 34.615 3.65 0.00 0.00 3.41
3544 3729 5.707242 TCGTAACAGAATCAGTGAGTCTT 57.293 39.130 20.02 9.90 34.68 3.01
3546 3731 5.885881 AGATCGTAACAGAATCAGTGAGTC 58.114 41.667 12.62 12.62 0.00 3.36
3549 3734 6.516739 AGAAGATCGTAACAGAATCAGTGA 57.483 37.500 0.00 0.00 0.00 3.41
3768 4012 7.010552 AGCGTAAAAGTATGATGTTAGCTGAAG 59.989 37.037 0.00 0.00 0.00 3.02
3769 4013 6.816640 AGCGTAAAAGTATGATGTTAGCTGAA 59.183 34.615 0.00 0.00 0.00 3.02
3770 4014 6.338146 AGCGTAAAAGTATGATGTTAGCTGA 58.662 36.000 0.00 0.00 0.00 4.26
3771 4015 6.477033 AGAGCGTAAAAGTATGATGTTAGCTG 59.523 38.462 0.00 0.00 0.00 4.24
3772 4016 6.574350 AGAGCGTAAAAGTATGATGTTAGCT 58.426 36.000 0.00 0.00 0.00 3.32
3773 4017 6.697892 AGAGAGCGTAAAAGTATGATGTTAGC 59.302 38.462 0.00 0.00 0.00 3.09
3774 4018 7.915923 TCAGAGAGCGTAAAAGTATGATGTTAG 59.084 37.037 0.00 0.00 0.00 2.34
3775 4019 7.768240 TCAGAGAGCGTAAAAGTATGATGTTA 58.232 34.615 0.00 0.00 0.00 2.41
3778 4022 6.920210 TGATCAGAGAGCGTAAAAGTATGATG 59.080 38.462 0.00 0.00 0.00 3.07
3779 4023 6.920758 GTGATCAGAGAGCGTAAAAGTATGAT 59.079 38.462 0.00 0.00 0.00 2.45
3780 4024 6.095580 AGTGATCAGAGAGCGTAAAAGTATGA 59.904 38.462 0.00 0.00 0.00 2.15
3781 4025 6.269315 AGTGATCAGAGAGCGTAAAAGTATG 58.731 40.000 0.00 0.00 0.00 2.39
3782 4026 6.458232 AGTGATCAGAGAGCGTAAAAGTAT 57.542 37.500 0.00 0.00 0.00 2.12
3783 4027 5.447413 CGAGTGATCAGAGAGCGTAAAAGTA 60.447 44.000 0.00 0.00 0.00 2.24
3784 4028 4.673061 CGAGTGATCAGAGAGCGTAAAAGT 60.673 45.833 0.00 0.00 0.00 2.66
3786 4030 3.427638 CCGAGTGATCAGAGAGCGTAAAA 60.428 47.826 0.00 0.00 0.00 1.52
3787 4031 2.097629 CCGAGTGATCAGAGAGCGTAAA 59.902 50.000 0.00 0.00 0.00 2.01
3789 4033 1.300481 CCGAGTGATCAGAGAGCGTA 58.700 55.000 0.00 0.00 0.00 4.42
3791 4035 0.453793 AACCGAGTGATCAGAGAGCG 59.546 55.000 0.00 0.00 0.00 5.03
3792 4036 2.663826 AAACCGAGTGATCAGAGAGC 57.336 50.000 0.00 0.00 0.00 4.09
3793 4037 4.035278 GGTAAACCGAGTGATCAGAGAG 57.965 50.000 0.00 0.00 0.00 3.20
3826 4070 3.556004 CGTTCAGAGCCTTCTTCTCCTTT 60.556 47.826 0.00 0.00 0.00 3.11
3830 4074 2.734276 ACGTTCAGAGCCTTCTTCTC 57.266 50.000 0.00 0.00 0.00 2.87
3831 4075 3.477210 AAACGTTCAGAGCCTTCTTCT 57.523 42.857 0.00 0.00 0.00 2.85
3832 4076 4.273724 AGAAAAACGTTCAGAGCCTTCTTC 59.726 41.667 0.00 0.00 0.00 2.87
3833 4077 4.200092 AGAAAAACGTTCAGAGCCTTCTT 58.800 39.130 0.00 0.00 0.00 2.52
3834 4078 3.809905 AGAAAAACGTTCAGAGCCTTCT 58.190 40.909 0.00 0.00 0.00 2.85
3835 4079 4.553756 AAGAAAAACGTTCAGAGCCTTC 57.446 40.909 0.00 0.00 0.00 3.46
3836 4080 4.983671 AAAGAAAAACGTTCAGAGCCTT 57.016 36.364 0.00 0.00 0.00 4.35
3837 4081 4.440112 CCAAAAGAAAAACGTTCAGAGCCT 60.440 41.667 0.00 0.00 0.00 4.58
3838 4082 3.796717 CCAAAAGAAAAACGTTCAGAGCC 59.203 43.478 0.00 0.00 0.00 4.70
3839 4083 3.796717 CCCAAAAGAAAAACGTTCAGAGC 59.203 43.478 0.00 0.00 0.00 4.09
3840 4084 4.142249 ACCCCAAAAGAAAAACGTTCAGAG 60.142 41.667 0.00 0.00 0.00 3.35
3841 4085 3.764972 ACCCCAAAAGAAAAACGTTCAGA 59.235 39.130 0.00 0.00 0.00 3.27
3842 4086 3.862845 CACCCCAAAAGAAAAACGTTCAG 59.137 43.478 0.00 0.00 0.00 3.02
3843 4087 3.368531 CCACCCCAAAAGAAAAACGTTCA 60.369 43.478 0.00 0.00 0.00 3.18
3844 4088 3.191669 CCACCCCAAAAGAAAAACGTTC 58.808 45.455 0.00 0.00 0.00 3.95
3845 4089 2.093394 CCCACCCCAAAAGAAAAACGTT 60.093 45.455 0.00 0.00 0.00 3.99
3846 4090 1.483004 CCCACCCCAAAAGAAAAACGT 59.517 47.619 0.00 0.00 0.00 3.99
3847 4091 1.483004 ACCCACCCCAAAAGAAAAACG 59.517 47.619 0.00 0.00 0.00 3.60
3848 4092 2.912771 CACCCACCCCAAAAGAAAAAC 58.087 47.619 0.00 0.00 0.00 2.43
3849 4093 1.210722 GCACCCACCCCAAAAGAAAAA 59.789 47.619 0.00 0.00 0.00 1.94
3850 4094 0.833949 GCACCCACCCCAAAAGAAAA 59.166 50.000 0.00 0.00 0.00 2.29
4250 4494 4.142534 CCCAAAGCCTATGAATATGATGCG 60.143 45.833 0.00 0.00 0.00 4.73
4301 4555 1.374505 CCTGCATTGCCCAAAACGG 60.375 57.895 6.12 0.00 0.00 4.44
4437 4691 0.110644 GAAAAAGTCAGCTCCACGCG 60.111 55.000 3.53 3.53 45.59 6.01
4484 4748 6.468543 GCCATAAAACCAAACCAAAGGAATA 58.531 36.000 0.00 0.00 0.00 1.75
4637 4901 0.684805 AAGGTGACTAGGCTCCGAGG 60.685 60.000 11.05 0.00 42.68 4.63
4640 4904 2.076863 CAAAAAGGTGACTAGGCTCCG 58.923 52.381 11.05 0.00 42.68 4.63
4714 5040 2.927014 GCCCTACATACGAGCTGCATAC 60.927 54.545 1.02 0.00 0.00 2.39
4725 5051 3.765511 TGTCCCATATACGCCCTACATAC 59.234 47.826 0.00 0.00 0.00 2.39
4733 5059 1.005394 CGGGTGTCCCATATACGCC 60.005 63.158 5.64 0.00 45.83 5.68
4761 5088 1.270826 CCGCTATCTGTCCGATGTGAT 59.729 52.381 0.00 0.00 33.48 3.06
4818 5145 4.251268 GTTTATGCGTCCTCACCTAAACT 58.749 43.478 0.00 0.00 0.00 2.66
4833 5160 5.126061 CAGGCTATGGGATATTGGTTTATGC 59.874 44.000 0.00 0.00 0.00 3.14
4837 5164 4.814224 ACAGGCTATGGGATATTGGTTT 57.186 40.909 0.00 0.00 0.00 3.27
4848 5175 5.555017 AGCACTTCATATTACAGGCTATGG 58.445 41.667 0.00 0.00 0.00 2.74
4873 5200 1.469703 CGTGATGCCTTGCTCATTTGA 59.530 47.619 0.00 0.00 0.00 2.69
4881 5208 0.170339 GTAAACCCGTGATGCCTTGC 59.830 55.000 0.00 0.00 0.00 4.01
4883 5210 0.696501 AGGTAAACCCGTGATGCCTT 59.303 50.000 0.00 0.00 38.74 4.35
4889 5216 1.416243 AGACACAGGTAAACCCGTGA 58.584 50.000 19.82 0.00 38.94 4.35
4905 5232 9.262358 GTTAAAGGATGTATCAAGGTCATAGAC 57.738 37.037 0.00 0.00 0.00 2.59
4906 5233 8.988060 TGTTAAAGGATGTATCAAGGTCATAGA 58.012 33.333 0.00 0.00 0.00 1.98
4907 5234 9.613428 TTGTTAAAGGATGTATCAAGGTCATAG 57.387 33.333 0.00 0.00 0.00 2.23
4908 5235 9.967451 TTTGTTAAAGGATGTATCAAGGTCATA 57.033 29.630 0.00 0.00 0.00 2.15
4909 5236 8.877864 TTTGTTAAAGGATGTATCAAGGTCAT 57.122 30.769 0.00 0.00 0.00 3.06
4910 5237 8.698973 TTTTGTTAAAGGATGTATCAAGGTCA 57.301 30.769 0.00 0.00 0.00 4.02
4911 5238 9.010029 TCTTTTGTTAAAGGATGTATCAAGGTC 57.990 33.333 0.00 0.00 40.93 3.85
4912 5239 8.934023 TCTTTTGTTAAAGGATGTATCAAGGT 57.066 30.769 0.00 0.00 40.93 3.50
4913 5240 9.793252 CATCTTTTGTTAAAGGATGTATCAAGG 57.207 33.333 14.55 0.00 44.97 3.61
4952 5279 8.055279 AGTGAGTAATAATGTGTTGGAAATGG 57.945 34.615 0.00 0.00 0.00 3.16
4961 5288 8.373048 TCAAAAACGAGTGAGTAATAATGTGT 57.627 30.769 0.00 0.00 0.00 3.72
5081 5408 7.496529 TTCCTTGAAAGAGTCACACAATTAG 57.503 36.000 0.00 0.00 35.39 1.73
5141 5468 1.630148 GAATCGTTCGAGACACCCAG 58.370 55.000 0.80 0.00 0.00 4.45
5183 5510 0.179000 CATGAAGACCCCGAGGAAGG 59.821 60.000 0.00 0.00 36.73 3.46
5202 5529 7.201617 CGAAAGAAAGGTGGGAATGTTATACTC 60.202 40.741 0.00 0.00 0.00 2.59
5242 5569 3.057033 AGTCGTCAAACGGTATGCTAAGT 60.057 43.478 0.00 0.00 42.81 2.24
5251 5578 0.386478 GCTACGAGTCGTCAAACGGT 60.386 55.000 23.66 0.00 42.81 4.83
5265 5592 0.782384 GACCTTGACGTTGTGCTACG 59.218 55.000 4.80 4.80 46.52 3.51
5276 5603 4.900635 AAATGTGTGTCTTGACCTTGAC 57.099 40.909 0.00 0.00 0.00 3.18
5278 5605 5.036737 GTGAAAATGTGTGTCTTGACCTTG 58.963 41.667 0.00 0.00 0.00 3.61
5289 5616 7.304735 TCCGATAAATTGAGTGAAAATGTGTG 58.695 34.615 0.00 0.00 0.00 3.82
5291 5618 7.807433 TGTTCCGATAAATTGAGTGAAAATGTG 59.193 33.333 0.00 0.00 0.00 3.21
5300 5627 2.347452 CGCGTGTTCCGATAAATTGAGT 59.653 45.455 0.00 0.00 39.56 3.41
5321 5648 1.911702 GCCTAGACCAAGACCCCACC 61.912 65.000 0.00 0.00 0.00 4.61
5322 5649 1.198759 TGCCTAGACCAAGACCCCAC 61.199 60.000 0.00 0.00 0.00 4.61
5349 5676 4.001618 CCCCCACATTGTTTAAACCTTG 57.998 45.455 15.59 14.24 0.00 3.61
5381 5708 2.765699 GCCACATAATGTTTGGGATGGT 59.234 45.455 0.00 0.00 0.00 3.55
5388 5715 6.794374 TGCTATAACTGCCACATAATGTTTG 58.206 36.000 0.00 0.00 0.00 2.93
5399 5726 3.995199 GCTGTAGATGCTATAACTGCCA 58.005 45.455 0.00 0.00 32.56 4.92
5408 5735 3.200918 TGTCCGGCTGTAGATGCTA 57.799 52.632 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.