Multiple sequence alignment - TraesCS4D01G235200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G235200 chr4D 100.000 7843 0 0 1 7843 396401477 396409319 0.000000e+00 14484.0
1 TraesCS4D01G235200 chr4A 92.680 5287 173 64 510 5680 77439302 77444490 0.000000e+00 7422.0
2 TraesCS4D01G235200 chr4A 94.043 940 40 7 6568 7497 77445278 77446211 0.000000e+00 1411.0
3 TraesCS4D01G235200 chr4A 90.936 673 29 10 5839 6479 77444485 77445157 0.000000e+00 876.0
4 TraesCS4D01G235200 chr4A 91.279 516 43 2 3 517 77438360 77438874 0.000000e+00 702.0
5 TraesCS4D01G235200 chr4A 92.582 337 23 2 7507 7843 77447699 77448033 4.260000e-132 483.0
6 TraesCS4D01G235200 chr4B 94.111 1766 58 18 3934 5676 487771261 487773003 0.000000e+00 2643.0
7 TraesCS4D01G235200 chr4B 95.862 1474 38 6 628 2081 487768285 487769755 0.000000e+00 2362.0
8 TraesCS4D01G235200 chr4B 94.787 1362 34 15 2541 3894 487769765 487771097 0.000000e+00 2087.0
9 TraesCS4D01G235200 chr4B 92.492 1292 63 15 6560 7843 487773674 487774939 0.000000e+00 1818.0
10 TraesCS4D01G235200 chr4B 90.265 678 25 8 5850 6509 487772997 487773651 0.000000e+00 848.0
11 TraesCS4D01G235200 chr4B 88.376 628 53 8 3 626 487767591 487768202 0.000000e+00 737.0
12 TraesCS4D01G235200 chr4B 91.379 174 13 2 5669 5841 567001879 567001707 3.660000e-58 237.0
13 TraesCS4D01G235200 chr3B 83.480 1362 122 45 744 2066 812816580 812817877 0.000000e+00 1173.0
14 TraesCS4D01G235200 chr3B 88.647 414 28 12 6546 6959 812822708 812823102 3.290000e-133 486.0
15 TraesCS4D01G235200 chr3B 87.724 391 40 4 3946 4336 812819454 812819836 4.320000e-122 449.0
16 TraesCS4D01G235200 chr3B 83.158 475 35 14 5183 5639 812822038 812822485 7.380000e-105 392.0
17 TraesCS4D01G235200 chr3B 90.980 255 17 5 4362 4616 812821244 812821492 9.750000e-89 339.0
18 TraesCS4D01G235200 chr3D 83.394 1367 119 47 744 2066 605068476 605069778 0.000000e+00 1168.0
19 TraesCS4D01G235200 chr3D 85.465 1087 108 24 3533 4611 605159293 605160337 0.000000e+00 1086.0
20 TraesCS4D01G235200 chr3D 85.733 764 71 17 997 1753 605156740 605157472 0.000000e+00 773.0
21 TraesCS4D01G235200 chr3D 87.945 506 50 7 3843 4346 605069860 605070356 3.150000e-163 586.0
22 TraesCS4D01G235200 chr3D 89.526 401 23 10 6561 6961 605072031 605072412 2.540000e-134 490.0
23 TraesCS4D01G235200 chr3D 84.156 486 39 17 5183 5639 605071302 605071778 3.360000e-118 436.0
24 TraesCS4D01G235200 chr3D 83.951 486 39 21 5183 5639 605160884 605161359 5.620000e-116 429.0
25 TraesCS4D01G235200 chr3D 90.335 269 24 2 3086 3353 605158460 605158727 1.250000e-92 351.0
26 TraesCS4D01G235200 chr3D 93.913 230 13 1 4381 4610 605070548 605070776 5.830000e-91 346.0
27 TraesCS4D01G235200 chr3D 92.442 172 13 0 5676 5847 145972545 145972716 6.080000e-61 246.0
28 TraesCS4D01G235200 chr3D 93.333 165 11 0 5676 5840 22383601 22383437 2.190000e-60 244.0
29 TraesCS4D01G235200 chr3D 88.601 193 14 5 1874 2066 605158151 605158335 2.200000e-55 228.0
30 TraesCS4D01G235200 chr3D 90.244 123 9 3 6561 6683 605161587 605161706 2.930000e-34 158.0
31 TraesCS4D01G235200 chr3A 85.525 1133 118 28 3489 4611 736127565 736128661 0.000000e+00 1142.0
32 TraesCS4D01G235200 chr3A 83.677 1017 88 35 762 1748 736125482 736126450 0.000000e+00 887.0
33 TraesCS4D01G235200 chr3A 84.189 487 36 23 5179 5639 736129197 736129668 1.210000e-117 435.0
34 TraesCS4D01G235200 chr3A 87.958 382 28 8 6580 6961 736129931 736130294 1.210000e-117 435.0
35 TraesCS4D01G235200 chr3A 92.982 171 12 0 5676 5846 477708166 477708336 4.700000e-62 250.0
36 TraesCS4D01G235200 chr6D 93.452 168 11 0 5676 5843 426285806 426285973 4.700000e-62 250.0
37 TraesCS4D01G235200 chr6D 88.482 191 20 2 5675 5863 40570083 40569893 6.120000e-56 230.0
38 TraesCS4D01G235200 chr6A 92.000 175 14 0 5666 5840 458217700 458217874 6.080000e-61 246.0
39 TraesCS4D01G235200 chr6B 91.813 171 14 0 5670 5840 230767144 230766974 1.020000e-58 239.0
40 TraesCS4D01G235200 chr1D 92.308 169 11 2 5676 5844 459839382 459839216 1.020000e-58 239.0
41 TraesCS4D01G235200 chr2A 89.394 66 5 2 97 161 700952678 700952742 1.810000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G235200 chr4D 396401477 396409319 7842 False 14484.000000 14484 100.000000 1 7843 1 chr4D.!!$F1 7842
1 TraesCS4D01G235200 chr4A 77438360 77448033 9673 False 2178.800000 7422 92.304000 3 7843 5 chr4A.!!$F1 7840
2 TraesCS4D01G235200 chr4B 487767591 487774939 7348 False 1749.166667 2643 92.648833 3 7843 6 chr4B.!!$F1 7840
3 TraesCS4D01G235200 chr3B 812816580 812823102 6522 False 567.800000 1173 86.797800 744 6959 5 chr3B.!!$F1 6215
4 TraesCS4D01G235200 chr3D 605068476 605072412 3936 False 605.200000 1168 87.786800 744 6961 5 chr3D.!!$F2 6217
5 TraesCS4D01G235200 chr3D 605156740 605161706 4966 False 504.166667 1086 87.388167 997 6683 6 chr3D.!!$F3 5686
6 TraesCS4D01G235200 chr3A 736125482 736130294 4812 False 724.750000 1142 85.337250 762 6961 4 chr3A.!!$F2 6199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 295 0.755698 TCAGGTACGGGGCTCATCTC 60.756 60.000 0.0 0.0 0.00 2.75 F
563 1003 0.944311 GGGCATCTGCATACGTACCG 60.944 60.000 0.0 0.0 44.36 4.02 F
2325 3822 0.396974 ACAACCAAAGGGAAGCAGCA 60.397 50.000 0.0 0.0 38.05 4.41 F
2831 4340 1.555075 TGTCCATCTAGGTCAAGCCAC 59.445 52.381 0.0 0.0 40.61 5.01 F
3457 4989 1.271379 GCACCCCTTGTTAGCTGAGAA 60.271 52.381 0.0 0.0 0.00 2.87 F
5179 9830 0.249868 GTGCTGTGCTACTGTGTGGA 60.250 55.000 0.0 0.0 0.00 4.02 F
5693 10375 0.043637 ATACTCCCTCCGTTCCCCAA 59.956 55.000 0.0 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1854 0.379669 GCATGCCTGTGCTGATGTAC 59.620 55.000 6.36 0.0 41.82 2.90 R
2539 4036 1.022735 CTGATTGGACCTGATGCAGC 58.977 55.000 0.00 0.0 0.00 5.25 R
3210 4728 1.668101 GCCGTGTGTAGGGGAGAGAG 61.668 65.000 0.00 0.0 32.43 3.20 R
4810 9021 1.750399 ATCCATTGGCCACGCACTC 60.750 57.895 3.88 0.0 0.00 3.51 R
5296 9970 0.385390 AACCTGCAACAAAAGAGGCG 59.615 50.000 0.00 0.0 0.00 5.52 R
6257 10969 0.322008 AGTTTGAGCCTAGCTGCACC 60.322 55.000 1.02 0.0 39.88 5.01 R
7305 12132 0.892814 TGGTTCCATCAATGCACGCA 60.893 50.000 0.00 0.0 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 79 4.507710 TGATAGGCACATCTCACTCAAAC 58.492 43.478 0.00 0.00 0.00 2.93
98 103 4.104102 TCGGCCCTTATCCTTATTCAACAT 59.896 41.667 0.00 0.00 0.00 2.71
103 108 7.015584 GGCCCTTATCCTTATTCAACATGAAAT 59.984 37.037 0.00 0.00 40.12 2.17
200 205 7.656707 ATTGTGCCTTTCATTTTGATACAAC 57.343 32.000 0.00 0.00 0.00 3.32
217 222 6.547880 TGATACAACTTACTCTCTCCCTCATC 59.452 42.308 0.00 0.00 0.00 2.92
233 238 3.512724 CCTCATCCAAAAGACTGGCAATT 59.487 43.478 0.00 0.00 36.32 2.32
238 243 3.894427 TCCAAAAGACTGGCAATTTGCTA 59.106 39.130 20.06 13.90 44.28 3.49
250 255 6.162777 TGGCAATTTGCTAGTTTAATTGACC 58.837 36.000 20.06 19.31 43.44 4.02
279 284 3.211803 TCAAACTCACGATCAGGTACG 57.788 47.619 0.00 0.00 0.00 3.67
287 292 1.464376 CGATCAGGTACGGGGCTCAT 61.464 60.000 0.00 0.00 0.00 2.90
290 295 0.755698 TCAGGTACGGGGCTCATCTC 60.756 60.000 0.00 0.00 0.00 2.75
345 350 5.820947 GGACAACCTCAACTTCTTCTGTTTA 59.179 40.000 0.00 0.00 0.00 2.01
438 443 3.127548 GGTGTTACCGTCGACTATGAAGA 59.872 47.826 14.70 0.00 0.00 2.87
454 459 7.293073 ACTATGAAGATGCCTATGGTGATTTT 58.707 34.615 0.00 0.00 0.00 1.82
463 468 5.716228 TGCCTATGGTGATTTTGTCAATCTT 59.284 36.000 0.00 0.00 38.90 2.40
486 491 8.188799 TCTTAAGATATTGTGTCGGTTCAGTAG 58.811 37.037 0.00 0.00 0.00 2.57
508 513 1.690219 CGGAGGTGCTCATAGCCCTT 61.690 60.000 9.40 0.00 40.43 3.95
531 971 3.047796 GGTATGTGTACGCGTTCATAGG 58.952 50.000 20.78 0.00 0.00 2.57
544 984 3.131396 GTTCATAGGGGTGAGTTATGCG 58.869 50.000 0.00 0.00 0.00 4.73
563 1003 0.944311 GGGCATCTGCATACGTACCG 60.944 60.000 0.00 0.00 44.36 4.02
564 1004 1.557443 GGCATCTGCATACGTACCGC 61.557 60.000 11.03 11.03 44.36 5.68
897 1424 6.379988 TCTTTAATCCAGCCCCAGTTTTATTC 59.620 38.462 0.00 0.00 0.00 1.75
931 1480 2.912295 TCCAACCCATCATCTCTCACAA 59.088 45.455 0.00 0.00 0.00 3.33
1227 1792 4.802051 CACCCGGCCACCTCCATG 62.802 72.222 2.24 0.00 0.00 3.66
1268 1841 0.956633 ATCGCACGGTCGGTACATAT 59.043 50.000 0.00 0.00 0.00 1.78
1281 1854 6.584942 GGTCGGTACATATACACACATACATG 59.415 42.308 0.00 0.00 32.40 3.21
1290 1865 8.650714 CATATACACACATACATGTACATCAGC 58.349 37.037 7.96 0.00 39.39 4.26
1322 1897 2.277949 ACGCGTGGACGATCGATG 60.278 61.111 24.34 6.10 43.02 3.84
1354 1929 2.472861 GCTGACGTCGAATGATGGTATG 59.527 50.000 11.62 0.00 35.31 2.39
1757 2344 3.126879 TGCACAGCGCCTGCATAC 61.127 61.111 22.80 0.00 46.23 2.39
1768 2355 2.224185 CGCCTGCATACCATACACCTAA 60.224 50.000 0.00 0.00 0.00 2.69
1771 2358 4.776349 CCTGCATACCATACACCTAAACA 58.224 43.478 0.00 0.00 0.00 2.83
1772 2359 5.376625 CCTGCATACCATACACCTAAACAT 58.623 41.667 0.00 0.00 0.00 2.71
1773 2360 5.239306 CCTGCATACCATACACCTAAACATG 59.761 44.000 0.00 0.00 0.00 3.21
1832 3024 0.801251 AGCAAGCAAGCAAGATCGAC 59.199 50.000 3.19 0.00 36.85 4.20
1840 3032 0.817654 AGCAAGATCGACGGATGTGA 59.182 50.000 0.00 0.00 31.51 3.58
2127 3336 2.661537 TCAGCAGTCAACACGCCG 60.662 61.111 0.00 0.00 0.00 6.46
2128 3337 4.374702 CAGCAGTCAACACGCCGC 62.375 66.667 0.00 0.00 0.00 6.53
2129 3338 4.609018 AGCAGTCAACACGCCGCT 62.609 61.111 0.00 0.00 0.00 5.52
2130 3339 4.374702 GCAGTCAACACGCCGCTG 62.375 66.667 0.00 0.00 0.00 5.18
2131 3340 3.716006 CAGTCAACACGCCGCTGG 61.716 66.667 0.00 0.00 0.00 4.85
2132 3341 4.235762 AGTCAACACGCCGCTGGT 62.236 61.111 0.00 0.00 0.00 4.00
2211 3704 8.299570 TCTCGTCTAGTACCGAAAAATAAGTTT 58.700 33.333 0.00 0.00 31.92 2.66
2323 3820 2.554032 CTGTACAACCAAAGGGAAGCAG 59.446 50.000 0.00 0.00 38.05 4.24
2324 3821 1.269723 GTACAACCAAAGGGAAGCAGC 59.730 52.381 0.00 0.00 38.05 5.25
2325 3822 0.396974 ACAACCAAAGGGAAGCAGCA 60.397 50.000 0.00 0.00 38.05 4.41
2397 3894 2.517959 GTGTATACATGGCCCATGCAT 58.482 47.619 23.64 18.48 44.80 3.96
2447 3944 7.152645 TCAGAAGAAGGGACGCATTAATATAC 58.847 38.462 0.00 0.00 0.00 1.47
2448 3945 7.015292 TCAGAAGAAGGGACGCATTAATATACT 59.985 37.037 0.00 0.00 0.00 2.12
2449 3946 7.329717 CAGAAGAAGGGACGCATTAATATACTC 59.670 40.741 0.00 0.00 0.00 2.59
2474 3971 4.442706 ACTACTTACATGGCAGCATGTAC 58.557 43.478 13.40 0.00 44.72 2.90
2475 3972 3.348647 ACTTACATGGCAGCATGTACA 57.651 42.857 13.40 0.00 44.72 2.90
2539 4036 1.632046 GGATTGGTGCACACGTACGG 61.632 60.000 21.06 11.05 0.00 4.02
2624 4126 2.290960 ACTTCCATTGCCACCCTTCTAC 60.291 50.000 0.00 0.00 0.00 2.59
2639 4141 8.643324 CCACCCTTCTACCTATATATAGAATGC 58.357 40.741 19.51 0.00 36.93 3.56
2640 4142 9.427821 CACCCTTCTACCTATATATAGAATGCT 57.572 37.037 19.51 1.55 36.93 3.79
2641 4143 9.427821 ACCCTTCTACCTATATATAGAATGCTG 57.572 37.037 19.51 5.77 36.93 4.41
2669 4171 2.030213 CACCGGTGTTTGCACAAAATTG 59.970 45.455 26.95 0.00 46.95 2.32
2771 4280 8.691797 ACTCTTGAGAGAATAGTGAAATACTCC 58.308 37.037 14.61 0.00 44.74 3.85
2831 4340 1.555075 TGTCCATCTAGGTCAAGCCAC 59.445 52.381 0.00 0.00 40.61 5.01
2898 4407 5.241064 GGTTAATCAGCCAGTCGATCTACTA 59.759 44.000 0.00 0.00 0.00 1.82
2899 4408 4.839668 AATCAGCCAGTCGATCTACTAC 57.160 45.455 0.00 0.00 0.00 2.73
2900 4409 3.562343 TCAGCCAGTCGATCTACTACT 57.438 47.619 0.00 0.00 0.00 2.57
2909 4418 7.755822 GCCAGTCGATCTACTACTTAATTATGG 59.244 40.741 0.00 0.00 0.00 2.74
3210 4728 1.934525 CATGCATGCTCTCACACTCTC 59.065 52.381 20.33 0.00 0.00 3.20
3457 4989 1.271379 GCACCCCTTGTTAGCTGAGAA 60.271 52.381 0.00 0.00 0.00 2.87
3529 5091 1.541147 AGCAAATGGTTGGTGTCATCG 59.459 47.619 0.00 0.00 43.72 3.84
3574 5746 9.502145 TTGATTTATGAAATGTGTAAAGCGATC 57.498 29.630 0.00 0.00 0.00 3.69
3585 5757 5.353956 TGTGTAAAGCGATCTTGCATTGTAT 59.646 36.000 0.00 0.00 37.31 2.29
3586 5758 6.536941 TGTGTAAAGCGATCTTGCATTGTATA 59.463 34.615 0.00 0.00 37.31 1.47
3587 5759 7.226523 TGTGTAAAGCGATCTTGCATTGTATAT 59.773 33.333 0.00 0.00 37.31 0.86
3588 5760 7.531871 GTGTAAAGCGATCTTGCATTGTATATG 59.468 37.037 0.00 0.00 37.31 1.78
3821 6002 4.153475 TGACGGCAGCTATGTTAAAAAGAC 59.847 41.667 0.00 0.00 0.00 3.01
4244 6849 1.407989 GCCCTCACCATCTTCTTCCTG 60.408 57.143 0.00 0.00 0.00 3.86
4336 6944 5.984695 TGATCTGTGCTAAACTAGACACT 57.015 39.130 0.00 0.00 35.39 3.55
4346 8345 7.332182 GTGCTAAACTAGACACTGCTATCTTTT 59.668 37.037 0.00 0.00 33.24 2.27
4644 8834 1.486211 TGGCTACTTCCAGCTCCTAC 58.514 55.000 0.00 0.00 41.50 3.18
4653 8843 2.752030 TCCAGCTCCTACTAGCACAAT 58.248 47.619 0.00 0.00 45.30 2.71
4805 9016 4.223032 TGGCTTTTGTTTTGGAGGTTTGTA 59.777 37.500 0.00 0.00 0.00 2.41
4809 9020 6.420903 GCTTTTGTTTTGGAGGTTTGTAGATC 59.579 38.462 0.00 0.00 0.00 2.75
4810 9021 5.682943 TTGTTTTGGAGGTTTGTAGATCG 57.317 39.130 0.00 0.00 0.00 3.69
4892 9103 2.827322 AGTACGTGTTGCTGGGTGTATA 59.173 45.455 0.00 0.00 0.00 1.47
5163 9814 5.936956 AGTAGTAGTATAGTATCGTGGGTGC 59.063 44.000 0.00 0.00 0.00 5.01
5176 9827 1.071471 GGGTGCTGTGCTACTGTGT 59.929 57.895 0.00 0.00 0.00 3.72
5177 9828 1.230635 GGGTGCTGTGCTACTGTGTG 61.231 60.000 0.00 0.00 0.00 3.82
5178 9829 1.230635 GGTGCTGTGCTACTGTGTGG 61.231 60.000 0.00 0.00 0.00 4.17
5179 9830 0.249868 GTGCTGTGCTACTGTGTGGA 60.250 55.000 0.00 0.00 0.00 4.02
5180 9831 0.467804 TGCTGTGCTACTGTGTGGAA 59.532 50.000 0.00 0.00 0.00 3.53
5181 9832 1.151668 GCTGTGCTACTGTGTGGAAG 58.848 55.000 0.00 0.00 0.00 3.46
5296 9970 7.820648 AGTGACAAATGTTGGACTCATTATTC 58.179 34.615 0.00 0.00 34.92 1.75
5413 10087 3.591023 GTTGGTGGCTTAACTCTCTCTC 58.409 50.000 0.00 0.00 0.00 3.20
5641 10323 7.360269 CCTGAACGATGCTTGCAATTTTATTTT 60.360 33.333 0.00 0.00 0.00 1.82
5679 10361 8.682936 ATAAACCAGAACCATGAATGATACTC 57.317 34.615 0.00 0.00 0.00 2.59
5681 10363 4.141390 ACCAGAACCATGAATGATACTCCC 60.141 45.833 0.00 0.00 0.00 4.30
5682 10364 4.103785 CCAGAACCATGAATGATACTCCCT 59.896 45.833 0.00 0.00 0.00 4.20
5683 10365 5.303971 CAGAACCATGAATGATACTCCCTC 58.696 45.833 0.00 0.00 0.00 4.30
5685 10367 2.634940 ACCATGAATGATACTCCCTCCG 59.365 50.000 0.00 0.00 0.00 4.63
5686 10368 2.634940 CCATGAATGATACTCCCTCCGT 59.365 50.000 0.00 0.00 0.00 4.69
5687 10369 3.071602 CCATGAATGATACTCCCTCCGTT 59.928 47.826 0.00 0.00 0.00 4.44
5688 10370 4.310769 CATGAATGATACTCCCTCCGTTC 58.689 47.826 0.00 0.00 0.00 3.95
5689 10371 2.698797 TGAATGATACTCCCTCCGTTCC 59.301 50.000 0.00 0.00 0.00 3.62
5690 10372 1.718280 ATGATACTCCCTCCGTTCCC 58.282 55.000 0.00 0.00 0.00 3.97
5691 10373 0.398098 TGATACTCCCTCCGTTCCCC 60.398 60.000 0.00 0.00 0.00 4.81
5692 10374 0.398098 GATACTCCCTCCGTTCCCCA 60.398 60.000 0.00 0.00 0.00 4.96
5693 10375 0.043637 ATACTCCCTCCGTTCCCCAA 59.956 55.000 0.00 0.00 0.00 4.12
5694 10376 0.043637 TACTCCCTCCGTTCCCCAAT 59.956 55.000 0.00 0.00 0.00 3.16
5695 10377 0.043637 ACTCCCTCCGTTCCCCAATA 59.956 55.000 0.00 0.00 0.00 1.90
5696 10378 1.345112 ACTCCCTCCGTTCCCCAATAT 60.345 52.381 0.00 0.00 0.00 1.28
5697 10379 2.090380 ACTCCCTCCGTTCCCCAATATA 60.090 50.000 0.00 0.00 0.00 0.86
5698 10380 3.182152 CTCCCTCCGTTCCCCAATATAT 58.818 50.000 0.00 0.00 0.00 0.86
5699 10381 2.910319 TCCCTCCGTTCCCCAATATATG 59.090 50.000 0.00 0.00 0.00 1.78
5700 10382 2.642807 CCCTCCGTTCCCCAATATATGT 59.357 50.000 0.00 0.00 0.00 2.29
5701 10383 3.307480 CCCTCCGTTCCCCAATATATGTC 60.307 52.174 0.00 0.00 0.00 3.06
5702 10384 3.583086 CCTCCGTTCCCCAATATATGTCT 59.417 47.826 0.00 0.00 0.00 3.41
5703 10385 4.041691 CCTCCGTTCCCCAATATATGTCTT 59.958 45.833 0.00 0.00 0.00 3.01
5704 10386 5.456186 CCTCCGTTCCCCAATATATGTCTTT 60.456 44.000 0.00 0.00 0.00 2.52
5705 10387 6.008696 TCCGTTCCCCAATATATGTCTTTT 57.991 37.500 0.00 0.00 0.00 2.27
5706 10388 6.428295 TCCGTTCCCCAATATATGTCTTTTT 58.572 36.000 0.00 0.00 0.00 1.94
5707 10389 7.575505 TCCGTTCCCCAATATATGTCTTTTTA 58.424 34.615 0.00 0.00 0.00 1.52
5708 10390 7.717875 TCCGTTCCCCAATATATGTCTTTTTAG 59.282 37.037 0.00 0.00 0.00 1.85
5709 10391 7.717875 CCGTTCCCCAATATATGTCTTTTTAGA 59.282 37.037 0.00 0.00 0.00 2.10
5710 10392 8.774586 CGTTCCCCAATATATGTCTTTTTAGAG 58.225 37.037 0.00 0.00 0.00 2.43
5711 10393 9.847224 GTTCCCCAATATATGTCTTTTTAGAGA 57.153 33.333 0.00 0.00 0.00 3.10
5733 10415 8.399425 AGAGATTCTAACAAGTGACTACATACG 58.601 37.037 0.00 0.00 0.00 3.06
5734 10416 8.277490 AGATTCTAACAAGTGACTACATACGA 57.723 34.615 0.00 0.00 0.00 3.43
5735 10417 8.737175 AGATTCTAACAAGTGACTACATACGAA 58.263 33.333 0.00 0.00 0.00 3.85
5736 10418 8.912787 ATTCTAACAAGTGACTACATACGAAG 57.087 34.615 0.00 0.00 0.00 3.79
5737 10419 6.320171 TCTAACAAGTGACTACATACGAAGC 58.680 40.000 0.00 0.00 0.00 3.86
5738 10420 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
5739 10421 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
5740 10422 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
5741 10423 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
5742 10424 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
5743 10425 7.041372 ACAAGTGACTACATACGAAGCAAAATT 60.041 33.333 0.00 0.00 0.00 1.82
5744 10426 8.440059 CAAGTGACTACATACGAAGCAAAATTA 58.560 33.333 0.00 0.00 0.00 1.40
5745 10427 8.186178 AGTGACTACATACGAAGCAAAATTAG 57.814 34.615 0.00 0.00 0.00 1.73
5746 10428 7.817962 AGTGACTACATACGAAGCAAAATTAGT 59.182 33.333 0.00 0.00 0.00 2.24
5747 10429 7.898309 GTGACTACATACGAAGCAAAATTAGTG 59.102 37.037 0.00 0.00 0.00 2.74
5748 10430 7.815549 TGACTACATACGAAGCAAAATTAGTGA 59.184 33.333 0.00 0.00 0.00 3.41
5749 10431 8.542497 ACTACATACGAAGCAAAATTAGTGAA 57.458 30.769 0.00 0.00 0.00 3.18
5750 10432 9.162764 ACTACATACGAAGCAAAATTAGTGAAT 57.837 29.630 0.00 0.00 0.00 2.57
5751 10433 9.638300 CTACATACGAAGCAAAATTAGTGAATC 57.362 33.333 0.00 0.00 0.00 2.52
5752 10434 8.268850 ACATACGAAGCAAAATTAGTGAATCT 57.731 30.769 0.00 0.00 0.00 2.40
5753 10435 9.378551 ACATACGAAGCAAAATTAGTGAATCTA 57.621 29.630 0.00 0.00 0.00 1.98
5754 10436 9.638300 CATACGAAGCAAAATTAGTGAATCTAC 57.362 33.333 0.00 0.00 0.00 2.59
5755 10437 7.667043 ACGAAGCAAAATTAGTGAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
5756 10438 7.519002 ACGAAGCAAAATTAGTGAATCTACAC 58.481 34.615 0.00 0.00 40.60 2.90
5799 10481 7.615582 ACATCTGTATGTTGTAGTCCATTTG 57.384 36.000 0.00 0.00 44.07 2.32
5800 10482 7.394016 ACATCTGTATGTTGTAGTCCATTTGA 58.606 34.615 0.00 0.00 44.07 2.69
5801 10483 7.882791 ACATCTGTATGTTGTAGTCCATTTGAA 59.117 33.333 0.00 0.00 44.07 2.69
5802 10484 8.729756 CATCTGTATGTTGTAGTCCATTTGAAA 58.270 33.333 0.00 0.00 0.00 2.69
5803 10485 8.862325 TCTGTATGTTGTAGTCCATTTGAAAT 57.138 30.769 0.00 0.00 0.00 2.17
5804 10486 8.729756 TCTGTATGTTGTAGTCCATTTGAAATG 58.270 33.333 10.84 10.84 0.00 2.32
5805 10487 8.402798 TGTATGTTGTAGTCCATTTGAAATGT 57.597 30.769 15.93 1.43 0.00 2.71
5806 10488 8.511321 TGTATGTTGTAGTCCATTTGAAATGTC 58.489 33.333 15.93 9.10 0.00 3.06
5807 10489 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
5808 10490 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
5809 10491 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
5810 10492 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
5811 10493 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
5838 10520 9.955102 AAACTTATATTTAGAAACGGAAGGAGT 57.045 29.630 0.00 0.00 0.00 3.85
5851 10533 9.374838 GAAACGGAAGGAGTATATAGTGAAAAA 57.625 33.333 0.00 0.00 0.00 1.94
5904 10602 1.060713 CTAGCAGTCGTTGTTGTCCG 58.939 55.000 0.00 0.00 0.00 4.79
5918 10616 0.104120 TGTCCGGTCAATCATAGGCG 59.896 55.000 0.00 0.00 0.00 5.52
6257 10969 4.838152 CCGGGTCGCCACCATCTG 62.838 72.222 1.96 0.00 45.94 2.90
6271 10986 0.532417 CATCTGGTGCAGCTAGGCTC 60.532 60.000 18.08 0.00 36.40 4.70
6482 11219 2.137177 ATAGCACCACCACCACCACC 62.137 60.000 0.00 0.00 0.00 4.61
6484 11221 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
6485 11222 2.694616 ACCACCACCACCACCACT 60.695 61.111 0.00 0.00 0.00 4.00
6492 11229 0.395036 CACCACCACCACTTCACCAA 60.395 55.000 0.00 0.00 0.00 3.67
6495 11232 1.597742 CACCACCACTTCACCAAGAG 58.402 55.000 0.00 0.00 33.34 2.85
6498 11235 1.543429 CCACCACTTCACCAAGAGGAC 60.543 57.143 5.35 0.00 41.68 3.85
6504 11246 2.224066 ACTTCACCAAGAGGACGACAAG 60.224 50.000 0.00 0.00 38.69 3.16
6509 11251 0.671781 CAAGAGGACGACAAGCCTGG 60.672 60.000 0.00 0.00 33.84 4.45
6510 11252 2.435059 GAGGACGACAAGCCTGGC 60.435 66.667 11.65 11.65 33.84 4.85
6511 11253 2.925170 AGGACGACAAGCCTGGCT 60.925 61.111 17.22 17.22 42.56 4.75
6525 11267 3.056821 AGCCTGGCTTAATTTTTCGTTCC 60.057 43.478 17.22 0.00 33.89 3.62
6528 11270 4.542735 CTGGCTTAATTTTTCGTTCCGTT 58.457 39.130 0.00 0.00 0.00 4.44
6529 11271 4.934515 TGGCTTAATTTTTCGTTCCGTTT 58.065 34.783 0.00 0.00 0.00 3.60
6530 11272 5.349809 TGGCTTAATTTTTCGTTCCGTTTT 58.650 33.333 0.00 0.00 0.00 2.43
6531 11273 5.811100 TGGCTTAATTTTTCGTTCCGTTTTT 59.189 32.000 0.00 0.00 0.00 1.94
6532 11274 6.019720 TGGCTTAATTTTTCGTTCCGTTTTTC 60.020 34.615 0.00 0.00 0.00 2.29
6533 11275 6.199531 GGCTTAATTTTTCGTTCCGTTTTTCT 59.800 34.615 0.00 0.00 0.00 2.52
6534 11276 7.271539 GCTTAATTTTTCGTTCCGTTTTTCTC 58.728 34.615 0.00 0.00 0.00 2.87
6535 11277 7.566328 GCTTAATTTTTCGTTCCGTTTTTCTCC 60.566 37.037 0.00 0.00 0.00 3.71
6536 11278 3.696281 TTTTCGTTCCGTTTTTCTCCC 57.304 42.857 0.00 0.00 0.00 4.30
6537 11279 2.625695 TTCGTTCCGTTTTTCTCCCT 57.374 45.000 0.00 0.00 0.00 4.20
6538 11280 1.873698 TCGTTCCGTTTTTCTCCCTG 58.126 50.000 0.00 0.00 0.00 4.45
6539 11281 0.872388 CGTTCCGTTTTTCTCCCTGG 59.128 55.000 0.00 0.00 0.00 4.45
6540 11282 1.541670 CGTTCCGTTTTTCTCCCTGGA 60.542 52.381 0.00 0.00 0.00 3.86
6541 11283 2.791655 GTTCCGTTTTTCTCCCTGGAT 58.208 47.619 0.00 0.00 0.00 3.41
6542 11284 2.488153 GTTCCGTTTTTCTCCCTGGATG 59.512 50.000 0.00 0.00 0.00 3.51
6543 11285 1.702957 TCCGTTTTTCTCCCTGGATGT 59.297 47.619 0.00 0.00 0.00 3.06
6544 11286 1.812571 CCGTTTTTCTCCCTGGATGTG 59.187 52.381 0.00 0.00 0.00 3.21
6545 11287 2.504367 CGTTTTTCTCCCTGGATGTGT 58.496 47.619 0.00 0.00 0.00 3.72
6546 11288 3.558321 CCGTTTTTCTCCCTGGATGTGTA 60.558 47.826 0.00 0.00 0.00 2.90
6547 11289 4.261801 CGTTTTTCTCCCTGGATGTGTAT 58.738 43.478 0.00 0.00 0.00 2.29
6548 11290 4.094887 CGTTTTTCTCCCTGGATGTGTATG 59.905 45.833 0.00 0.00 0.00 2.39
6549 11291 3.931907 TTTCTCCCTGGATGTGTATGG 57.068 47.619 0.00 0.00 0.00 2.74
6550 11292 2.866923 TCTCCCTGGATGTGTATGGA 57.133 50.000 0.00 0.00 0.00 3.41
6551 11293 3.350992 TCTCCCTGGATGTGTATGGAT 57.649 47.619 0.00 0.00 0.00 3.41
6552 11294 3.668821 TCTCCCTGGATGTGTATGGATT 58.331 45.455 0.00 0.00 0.00 3.01
6553 11295 3.648067 TCTCCCTGGATGTGTATGGATTC 59.352 47.826 0.00 0.00 0.00 2.52
6554 11296 3.392285 CTCCCTGGATGTGTATGGATTCA 59.608 47.826 0.00 0.00 0.00 2.57
6555 11297 3.392285 TCCCTGGATGTGTATGGATTCAG 59.608 47.826 0.00 0.00 0.00 3.02
6556 11298 3.497405 CCCTGGATGTGTATGGATTCAGG 60.497 52.174 0.00 0.00 39.94 3.86
6557 11299 3.137176 CCTGGATGTGTATGGATTCAGGT 59.863 47.826 0.00 0.00 36.66 4.00
6558 11300 4.385643 CCTGGATGTGTATGGATTCAGGTT 60.386 45.833 0.00 0.00 36.66 3.50
6566 11308 5.705441 GTGTATGGATTCAGGTTGTTCAGAA 59.295 40.000 0.00 0.00 0.00 3.02
6576 11318 2.538939 GGTTGTTCAGAAGTGTTGACGC 60.539 50.000 0.00 0.00 0.00 5.19
7017 11841 5.491078 ACCATAAGAGGAAATGTTGGTAGGA 59.509 40.000 0.00 0.00 34.37 2.94
7023 11847 3.266772 AGGAAATGTTGGTAGGATCAGCA 59.733 43.478 0.00 0.00 0.00 4.41
7102 11926 2.864489 GCCTAGCGGTCTTGCTATCTTC 60.864 54.545 0.00 0.00 45.79 2.87
7103 11927 2.625790 CCTAGCGGTCTTGCTATCTTCT 59.374 50.000 0.00 0.00 45.79 2.85
7104 11928 3.068873 CCTAGCGGTCTTGCTATCTTCTT 59.931 47.826 0.00 0.00 45.79 2.52
7125 11949 0.462759 CCTCGTTCCTCCAGCCAATC 60.463 60.000 0.00 0.00 0.00 2.67
7139 11963 6.138263 TCCAGCCAATCCATATTTGATTCTT 58.862 36.000 0.00 0.00 30.16 2.52
7207 12032 3.490890 GCTTCAGGCGCCACTTAG 58.509 61.111 31.54 20.04 0.00 2.18
7305 12132 6.573664 TCTTTTGCACTGCATACTTATTGT 57.426 33.333 4.10 0.00 38.76 2.71
7347 12174 3.894920 TGCCACATAAAATGTTGTGACG 58.105 40.909 0.00 0.00 44.74 4.35
7350 12177 4.794655 GCCACATAAAATGTTGTGACGGTT 60.795 41.667 0.00 0.00 44.74 4.44
7376 12203 3.071479 TCACTCTTTGGCGATTTGGTAC 58.929 45.455 0.00 0.00 0.00 3.34
7421 12248 6.822676 ACAAAATTTCCAAAGTTCTCATGCAA 59.177 30.769 0.00 0.00 0.00 4.08
7422 12249 6.849588 AAATTTCCAAAGTTCTCATGCAAC 57.150 33.333 0.00 0.00 0.00 4.17
7437 12266 4.766373 TCATGCAACACACCAGTTTATCAT 59.234 37.500 0.00 0.00 0.00 2.45
7439 12268 6.602803 TCATGCAACACACCAGTTTATCATAT 59.397 34.615 0.00 0.00 0.00 1.78
7484 12313 5.177696 GCTTCTCATACGAAACAACAGAACT 59.822 40.000 0.00 0.00 0.00 3.01
7491 12320 2.097466 CGAAACAACAGAACTGGCAACT 59.903 45.455 6.76 0.00 37.61 3.16
7511 13818 0.033504 GACAGTTGTCTCGCAGGGAA 59.966 55.000 5.04 0.00 41.65 3.97
7537 13844 2.592993 TTGGACTCTTCCGCCCCTG 61.593 63.158 0.00 0.00 46.37 4.45
7551 13860 1.632589 CCCCTGGCTTTGCTAAGTTT 58.367 50.000 9.64 0.00 33.74 2.66
7570 13879 4.039852 AGTTTAACGTTGATGGGGCAATTT 59.960 37.500 11.99 0.00 0.00 1.82
7571 13880 4.608948 TTAACGTTGATGGGGCAATTTT 57.391 36.364 11.99 0.00 0.00 1.82
7631 13940 6.950842 TGCAGGGACTCTAATGGATTATATG 58.049 40.000 0.00 0.00 34.60 1.78
7637 13946 6.067217 ACTCTAATGGATTATATGTGGGGC 57.933 41.667 0.00 0.00 0.00 5.80
7649 13958 3.407967 TGGGGCCTTCGACCATCC 61.408 66.667 0.84 0.00 0.00 3.51
7653 13962 1.335132 GGGCCTTCGACCATCCACTA 61.335 60.000 0.84 0.00 0.00 2.74
7679 13988 6.660521 TCATGATGTTTTAGATCCAGCAACTT 59.339 34.615 0.00 0.00 0.00 2.66
7696 14005 3.127425 ACTTTCGAAGCTTTAGCCTGT 57.873 42.857 0.00 0.00 43.38 4.00
7699 14008 1.156736 TCGAAGCTTTAGCCTGTTGC 58.843 50.000 0.00 0.00 43.38 4.17
7759 14068 8.905850 TGTAATATTGTGATTGCATCAGATTGT 58.094 29.630 0.00 0.00 40.53 2.71
7832 14142 9.866798 TGCAAGTATAATCATAGAGATCATCAC 57.133 33.333 0.00 0.00 35.39 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.697507 AATCTATTTGAACCTCAAGTCAAAGT 57.302 30.769 5.24 0.00 37.70 2.66
74 79 4.065789 GTTGAATAAGGATAAGGGCCGAG 58.934 47.826 0.00 0.00 0.00 4.63
98 103 9.739276 ACAGACATAGGAAGAAACATAATTTCA 57.261 29.630 2.51 0.00 0.00 2.69
103 108 8.918202 AACAACAGACATAGGAAGAAACATAA 57.082 30.769 0.00 0.00 0.00 1.90
163 168 6.702723 TGAAAGGCACAATTTCTCATTCAAAG 59.297 34.615 0.00 0.00 37.51 2.77
168 173 7.716123 TCAAAATGAAAGGCACAATTTCTCATT 59.284 29.630 0.00 0.00 37.51 2.57
200 205 5.423610 TCTTTTGGATGAGGGAGAGAGTAAG 59.576 44.000 0.00 0.00 0.00 2.34
217 222 3.116079 AGCAAATTGCCAGTCTTTTGG 57.884 42.857 15.04 0.00 46.52 3.28
255 260 3.804036 ACCTGATCGTGAGTTTGAACAA 58.196 40.909 0.00 0.00 0.00 2.83
279 284 2.725221 AAATCACAGAGATGAGCCCC 57.275 50.000 0.00 0.00 36.96 5.80
287 292 9.506018 TCAACAATCTTGATAAAATCACAGAGA 57.494 29.630 0.00 0.00 39.39 3.10
345 350 5.510861 GGCTAACCATATTGTCCGTCTGTAT 60.511 44.000 0.00 0.00 35.26 2.29
438 443 5.895534 AGATTGACAAAATCACCATAGGCAT 59.104 36.000 0.00 0.00 36.92 4.40
454 459 7.327975 ACCGACACAATATCTTAAGATTGACA 58.672 34.615 22.60 5.72 36.41 3.58
463 468 6.096423 AGCTACTGAACCGACACAATATCTTA 59.904 38.462 0.00 0.00 0.00 2.10
486 491 1.300542 GCTATGAGCACCTCCGAGC 60.301 63.158 0.00 0.00 41.89 5.03
508 513 0.602060 TGAACGCGTACACATACCCA 59.398 50.000 14.46 0.00 0.00 4.51
519 959 1.255667 ACTCACCCCTATGAACGCGT 61.256 55.000 5.58 5.58 0.00 6.01
520 960 0.108329 AACTCACCCCTATGAACGCG 60.108 55.000 3.53 3.53 0.00 6.01
531 971 1.152963 ATGCCCGCATAACTCACCC 60.153 57.895 0.00 0.00 34.49 4.61
544 984 2.914379 GGTACGTATGCAGATGCCC 58.086 57.895 0.00 0.00 41.18 5.36
897 1424 2.025416 TGGGTTGGAGAGAGAGAGAGAG 60.025 54.545 0.00 0.00 0.00 3.20
1227 1792 1.379044 CTGGTCCATGAACTGGCCC 60.379 63.158 0.00 0.00 43.87 5.80
1268 1841 5.810074 GTGCTGATGTACATGTATGTGTGTA 59.190 40.000 14.43 0.00 41.89 2.90
1281 1854 0.379669 GCATGCCTGTGCTGATGTAC 59.620 55.000 6.36 0.00 41.82 2.90
1290 1865 4.156622 CGTGCTCGCATGCCTGTG 62.157 66.667 13.15 1.01 0.00 3.66
1322 1897 1.696832 GACGTCAGCCCGAATGCTTC 61.697 60.000 11.55 0.00 40.32 3.86
1354 1929 3.616560 CGTACCTGCATCCATACCATACC 60.617 52.174 0.00 0.00 0.00 2.73
1561 2140 2.169561 GAGGAAGTTGAGGGAGATGGAC 59.830 54.545 0.00 0.00 0.00 4.02
1757 2344 1.333619 GCGGCATGTTTAGGTGTATGG 59.666 52.381 0.00 0.00 0.00 2.74
1824 2425 4.330074 GTCAATTTCACATCCGTCGATCTT 59.670 41.667 0.00 0.00 0.00 2.40
1832 3024 3.479006 GACGTTGTCAATTTCACATCCG 58.521 45.455 0.00 5.80 32.09 4.18
1840 3032 1.192980 GGCGTACGACGTTGTCAATTT 59.807 47.619 21.65 0.00 44.73 1.82
2083 3289 3.692101 TGTTGTTGTGTTTGTGTAGGAGG 59.308 43.478 0.00 0.00 0.00 4.30
2084 3290 4.955925 TGTTGTTGTGTTTGTGTAGGAG 57.044 40.909 0.00 0.00 0.00 3.69
2211 3704 7.020827 AGACAAAGGAGGTTTCATAATCTCA 57.979 36.000 0.00 0.00 42.28 3.27
2290 3787 8.746530 CCTTTGGTTGTACAGTACTATAAGAGA 58.253 37.037 12.07 0.00 0.00 3.10
2291 3788 7.980099 CCCTTTGGTTGTACAGTACTATAAGAG 59.020 40.741 12.07 4.11 0.00 2.85
2292 3789 7.675195 TCCCTTTGGTTGTACAGTACTATAAGA 59.325 37.037 12.07 0.00 0.00 2.10
2293 3790 7.844009 TCCCTTTGGTTGTACAGTACTATAAG 58.156 38.462 12.07 9.06 0.00 1.73
2295 3792 7.580109 GCTTCCCTTTGGTTGTACAGTACTATA 60.580 40.741 12.07 0.00 0.00 1.31
2296 3793 6.691255 TTCCCTTTGGTTGTACAGTACTAT 57.309 37.500 12.07 0.00 0.00 2.12
2298 3795 4.745783 GCTTCCCTTTGGTTGTACAGTACT 60.746 45.833 12.07 0.00 0.00 2.73
2299 3796 3.501062 GCTTCCCTTTGGTTGTACAGTAC 59.499 47.826 3.49 3.49 0.00 2.73
2302 3799 2.554032 CTGCTTCCCTTTGGTTGTACAG 59.446 50.000 0.00 0.00 0.00 2.74
2303 3800 2.582052 CTGCTTCCCTTTGGTTGTACA 58.418 47.619 0.00 0.00 0.00 2.90
2323 3820 9.061610 GTACAGTAACAATGTCAAAACATATGC 57.938 33.333 1.58 0.00 45.48 3.14
2447 3944 3.384789 TGCTGCCATGTAAGTAGTAGGAG 59.615 47.826 0.00 0.00 0.00 3.69
2448 3945 3.371034 TGCTGCCATGTAAGTAGTAGGA 58.629 45.455 0.00 0.00 0.00 2.94
2449 3946 3.819564 TGCTGCCATGTAAGTAGTAGG 57.180 47.619 0.00 0.00 0.00 3.18
2474 3971 1.683917 CACACCCCTACTAGCTAGCTG 59.316 57.143 27.68 18.34 0.00 4.24
2475 3972 1.411787 CCACACCCCTACTAGCTAGCT 60.412 57.143 23.12 23.12 0.00 3.32
2524 4021 3.918977 AGCCGTACGTGTGCACCA 61.919 61.111 15.69 0.00 0.00 4.17
2539 4036 1.022735 CTGATTGGACCTGATGCAGC 58.977 55.000 0.00 0.00 0.00 5.25
2639 4141 2.126467 CAAACACCGGTGCAAATTCAG 58.874 47.619 34.26 12.97 0.00 3.02
2640 4142 1.804372 GCAAACACCGGTGCAAATTCA 60.804 47.619 34.26 0.00 40.58 2.57
2641 4143 0.858583 GCAAACACCGGTGCAAATTC 59.141 50.000 34.26 14.64 40.58 2.17
2669 4171 6.595716 GCCCATATATGTAGTGATGAGAAACC 59.404 42.308 11.73 0.00 0.00 3.27
2766 4275 8.725606 TTGTAAAAGGAAACCTAGTAGGAGTA 57.274 34.615 23.50 0.52 37.67 2.59
2767 4276 7.622502 TTGTAAAAGGAAACCTAGTAGGAGT 57.377 36.000 23.50 9.54 37.67 3.85
2768 4277 8.947115 CATTTGTAAAAGGAAACCTAGTAGGAG 58.053 37.037 23.50 0.00 37.67 3.69
2769 4278 8.442374 ACATTTGTAAAAGGAAACCTAGTAGGA 58.558 33.333 23.50 0.00 37.67 2.94
2770 4279 8.631480 ACATTTGTAAAAGGAAACCTAGTAGG 57.369 34.615 15.09 15.09 42.49 3.18
2771 4280 9.893305 CAACATTTGTAAAAGGAAACCTAGTAG 57.107 33.333 0.00 0.00 31.13 2.57
2831 4340 1.066716 CAATCCCAACCATGCACCAAG 60.067 52.381 0.00 0.00 0.00 3.61
2898 4407 8.980596 TGATTTTCTTGCCATCCATAATTAAGT 58.019 29.630 0.00 0.00 0.00 2.24
2899 4408 9.991906 ATGATTTTCTTGCCATCCATAATTAAG 57.008 29.630 0.00 0.00 0.00 1.85
3210 4728 1.668101 GCCGTGTGTAGGGGAGAGAG 61.668 65.000 0.00 0.00 32.43 3.20
3574 5746 5.463392 AGCACGACTACATATACAATGCAAG 59.537 40.000 0.00 0.00 32.99 4.01
3585 5757 5.651139 AGAACTTCCTAAGCACGACTACATA 59.349 40.000 0.00 0.00 0.00 2.29
3586 5758 4.463186 AGAACTTCCTAAGCACGACTACAT 59.537 41.667 0.00 0.00 0.00 2.29
3587 5759 3.825014 AGAACTTCCTAAGCACGACTACA 59.175 43.478 0.00 0.00 0.00 2.74
3588 5760 4.437772 AGAACTTCCTAAGCACGACTAC 57.562 45.455 0.00 0.00 0.00 2.73
3821 6002 5.107220 GCTTTCTGTTTTGGAGCAATTCATG 60.107 40.000 0.00 0.00 33.68 3.07
3888 6262 5.647589 TGGACATGTCACTATCGTTAAGAC 58.352 41.667 26.47 5.23 0.00 3.01
4230 6835 2.637165 ACCTTCCAGGAAGAAGATGGT 58.363 47.619 28.56 15.69 45.08 3.55
4653 8843 1.989966 GCTACGCACCTAGACGAGCA 61.990 60.000 6.76 0.00 34.67 4.26
4805 9016 2.244117 ATTGGCCACGCACTCGATCT 62.244 55.000 3.88 0.00 39.41 2.75
4809 9020 3.803082 CCATTGGCCACGCACTCG 61.803 66.667 3.88 0.00 42.43 4.18
4810 9021 1.750399 ATCCATTGGCCACGCACTC 60.750 57.895 3.88 0.00 0.00 3.51
4892 9103 0.966179 TGACGGACGCTGGCATATAT 59.034 50.000 0.00 0.00 0.00 0.86
5163 9814 2.138320 CACTTCCACACAGTAGCACAG 58.862 52.381 0.00 0.00 0.00 3.66
5176 9827 4.591498 ACACACTGTATAGTTCCACTTCCA 59.409 41.667 0.00 0.00 34.07 3.53
5177 9828 5.148651 ACACACTGTATAGTTCCACTTCC 57.851 43.478 0.00 0.00 34.07 3.46
5178 9829 5.779922 TGACACACTGTATAGTTCCACTTC 58.220 41.667 0.00 0.00 34.07 3.01
5179 9830 5.801531 TGACACACTGTATAGTTCCACTT 57.198 39.130 0.00 0.00 34.07 3.16
5180 9831 6.166279 CAATGACACACTGTATAGTTCCACT 58.834 40.000 0.00 0.00 34.07 4.00
5181 9832 5.932303 ACAATGACACACTGTATAGTTCCAC 59.068 40.000 0.00 0.00 34.07 4.02
5296 9970 0.385390 AACCTGCAACAAAAGAGGCG 59.615 50.000 0.00 0.00 0.00 5.52
5413 10087 4.460382 ACTGTCAAAGAAATGCATACAGGG 59.540 41.667 21.52 5.29 37.71 4.45
5464 10142 3.319972 ACATGCAAACATTCAGCAACTCT 59.680 39.130 0.00 0.00 42.15 3.24
5641 10323 8.696374 TGGTTCTGGTTTATTTTGTGTGAATAA 58.304 29.630 0.00 0.00 0.00 1.40
5656 10338 5.888161 GGAGTATCATTCATGGTTCTGGTTT 59.112 40.000 0.00 0.00 36.25 3.27
5679 10361 2.642807 ACATATATTGGGGAACGGAGGG 59.357 50.000 0.00 0.00 0.00 4.30
5681 10363 4.891992 AGACATATATTGGGGAACGGAG 57.108 45.455 0.00 0.00 0.00 4.63
5682 10364 5.640158 AAAGACATATATTGGGGAACGGA 57.360 39.130 0.00 0.00 0.00 4.69
5683 10365 6.709018 AAAAAGACATATATTGGGGAACGG 57.291 37.500 0.00 0.00 0.00 4.44
5685 10367 9.847224 TCTCTAAAAAGACATATATTGGGGAAC 57.153 33.333 0.00 0.00 0.00 3.62
5707 10389 8.399425 CGTATGTAGTCACTTGTTAGAATCTCT 58.601 37.037 0.00 0.00 0.00 3.10
5708 10390 8.396390 TCGTATGTAGTCACTTGTTAGAATCTC 58.604 37.037 0.00 0.00 0.00 2.75
5709 10391 8.277490 TCGTATGTAGTCACTTGTTAGAATCT 57.723 34.615 0.00 0.00 0.00 2.40
5710 10392 8.906636 TTCGTATGTAGTCACTTGTTAGAATC 57.093 34.615 0.00 0.00 0.00 2.52
5711 10393 7.488471 GCTTCGTATGTAGTCACTTGTTAGAAT 59.512 37.037 0.00 0.00 0.00 2.40
5712 10394 6.805271 GCTTCGTATGTAGTCACTTGTTAGAA 59.195 38.462 0.00 0.00 0.00 2.10
5713 10395 6.072342 TGCTTCGTATGTAGTCACTTGTTAGA 60.072 38.462 0.00 0.00 0.00 2.10
5714 10396 6.090783 TGCTTCGTATGTAGTCACTTGTTAG 58.909 40.000 0.00 0.00 0.00 2.34
5715 10397 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
5716 10398 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
5717 10399 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
5718 10400 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
5719 10401 7.435068 AATTTTGCTTCGTATGTAGTCACTT 57.565 32.000 0.00 0.00 0.00 3.16
5720 10402 7.817962 ACTAATTTTGCTTCGTATGTAGTCACT 59.182 33.333 0.00 0.00 0.00 3.41
5721 10403 7.898309 CACTAATTTTGCTTCGTATGTAGTCAC 59.102 37.037 0.00 0.00 0.00 3.67
5722 10404 7.815549 TCACTAATTTTGCTTCGTATGTAGTCA 59.184 33.333 0.00 0.00 0.00 3.41
5723 10405 8.181487 TCACTAATTTTGCTTCGTATGTAGTC 57.819 34.615 0.00 0.00 0.00 2.59
5724 10406 8.542497 TTCACTAATTTTGCTTCGTATGTAGT 57.458 30.769 0.00 0.00 0.00 2.73
5725 10407 9.638300 GATTCACTAATTTTGCTTCGTATGTAG 57.362 33.333 0.00 0.00 0.00 2.74
5726 10408 9.378551 AGATTCACTAATTTTGCTTCGTATGTA 57.621 29.630 0.00 0.00 0.00 2.29
5727 10409 8.268850 AGATTCACTAATTTTGCTTCGTATGT 57.731 30.769 0.00 0.00 0.00 2.29
5728 10410 9.638300 GTAGATTCACTAATTTTGCTTCGTATG 57.362 33.333 0.00 0.00 32.49 2.39
5729 10411 9.378551 TGTAGATTCACTAATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 32.49 3.06
5730 10412 8.653338 GTGTAGATTCACTAATTTTGCTTCGTA 58.347 33.333 0.00 0.00 35.68 3.43
5731 10413 7.387948 AGTGTAGATTCACTAATTTTGCTTCGT 59.612 33.333 0.00 0.00 45.31 3.85
5732 10414 7.743104 AGTGTAGATTCACTAATTTTGCTTCG 58.257 34.615 0.00 0.00 45.31 3.79
5733 10415 9.899226 AAAGTGTAGATTCACTAATTTTGCTTC 57.101 29.630 0.00 0.00 46.25 3.86
5773 10455 9.330063 CAAATGGACTACAACATACAGATGTAT 57.670 33.333 0.00 0.00 45.93 2.29
5774 10456 8.536175 TCAAATGGACTACAACATACAGATGTA 58.464 33.333 0.00 0.00 45.93 2.29
5776 10458 7.848223 TCAAATGGACTACAACATACAGATG 57.152 36.000 0.00 0.00 39.16 2.90
5777 10459 8.862325 TTTCAAATGGACTACAACATACAGAT 57.138 30.769 0.00 0.00 0.00 2.90
5778 10460 8.729756 CATTTCAAATGGACTACAACATACAGA 58.270 33.333 1.73 0.00 0.00 3.41
5779 10461 8.514594 ACATTTCAAATGGACTACAACATACAG 58.485 33.333 14.70 0.00 0.00 2.74
5780 10462 8.402798 ACATTTCAAATGGACTACAACATACA 57.597 30.769 14.70 0.00 0.00 2.29
5781 10463 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
5782 10464 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
5783 10465 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
5784 10466 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
5785 10467 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
5812 10494 9.955102 ACTCCTTCCGTTTCTAAATATAAGTTT 57.045 29.630 0.00 0.00 0.00 2.66
5821 10503 9.412460 TCACTATATACTCCTTCCGTTTCTAAA 57.588 33.333 0.00 0.00 0.00 1.85
5822 10504 8.985315 TCACTATATACTCCTTCCGTTTCTAA 57.015 34.615 0.00 0.00 0.00 2.10
5823 10505 8.985315 TTCACTATATACTCCTTCCGTTTCTA 57.015 34.615 0.00 0.00 0.00 2.10
5824 10506 7.893124 TTCACTATATACTCCTTCCGTTTCT 57.107 36.000 0.00 0.00 0.00 2.52
5825 10507 8.937634 TTTTCACTATATACTCCTTCCGTTTC 57.062 34.615 0.00 0.00 0.00 2.78
5826 10508 9.159364 GTTTTTCACTATATACTCCTTCCGTTT 57.841 33.333 0.00 0.00 0.00 3.60
5827 10509 7.490402 CGTTTTTCACTATATACTCCTTCCGTT 59.510 37.037 0.00 0.00 0.00 4.44
5828 10510 6.976925 CGTTTTTCACTATATACTCCTTCCGT 59.023 38.462 0.00 0.00 0.00 4.69
5829 10511 7.198390 TCGTTTTTCACTATATACTCCTTCCG 58.802 38.462 0.00 0.00 0.00 4.30
5830 10512 9.194271 GATCGTTTTTCACTATATACTCCTTCC 57.806 37.037 0.00 0.00 0.00 3.46
5831 10513 9.194271 GGATCGTTTTTCACTATATACTCCTTC 57.806 37.037 0.00 0.00 0.00 3.46
5832 10514 8.701895 TGGATCGTTTTTCACTATATACTCCTT 58.298 33.333 0.00 0.00 0.00 3.36
5833 10515 8.246430 TGGATCGTTTTTCACTATATACTCCT 57.754 34.615 0.00 0.00 0.00 3.69
5834 10516 8.926710 CATGGATCGTTTTTCACTATATACTCC 58.073 37.037 0.00 0.00 0.00 3.85
5835 10517 9.477484 ACATGGATCGTTTTTCACTATATACTC 57.523 33.333 0.00 0.00 0.00 2.59
5841 10523 7.447374 TCAAACATGGATCGTTTTTCACTAT 57.553 32.000 0.00 0.00 34.40 2.12
5843 10525 5.766150 TCAAACATGGATCGTTTTTCACT 57.234 34.783 0.00 0.00 34.40 3.41
5851 10533 5.997746 TCTTCTTCTTTCAAACATGGATCGT 59.002 36.000 0.00 0.00 0.00 3.73
5904 10602 3.248602 GTCATCAACGCCTATGATTGACC 59.751 47.826 0.00 0.00 35.38 4.02
5918 10616 0.944386 ACTGTGCCAACGTCATCAAC 59.056 50.000 0.00 0.00 0.00 3.18
5930 10629 4.321230 CCCTGAATTAAGTTTCACTGTGCC 60.321 45.833 2.12 0.00 32.39 5.01
6092 10792 4.022068 GCTCAACATTCCCTTTCATGTCAA 60.022 41.667 0.00 0.00 32.21 3.18
6228 10928 1.378119 GACCCGGTGAACCCCAATC 60.378 63.158 0.00 0.00 0.00 2.67
6229 10929 2.761160 GACCCGGTGAACCCCAAT 59.239 61.111 0.00 0.00 0.00 3.16
6257 10969 0.322008 AGTTTGAGCCTAGCTGCACC 60.322 55.000 1.02 0.00 39.88 5.01
6271 10986 3.302740 GCTGCATAGCTAGCGTAAGTTTG 60.303 47.826 9.55 0.00 46.57 2.93
6482 11219 1.068588 TGTCGTCCTCTTGGTGAAGTG 59.931 52.381 0.00 0.00 34.23 3.16
6484 11221 2.408050 CTTGTCGTCCTCTTGGTGAAG 58.592 52.381 0.00 0.00 34.23 3.02
6485 11222 1.540363 GCTTGTCGTCCTCTTGGTGAA 60.540 52.381 0.00 0.00 34.23 3.18
6492 11229 2.948720 GCCAGGCTTGTCGTCCTCT 61.949 63.158 3.29 0.00 0.00 3.69
6504 11246 3.250744 GGAACGAAAAATTAAGCCAGGC 58.749 45.455 1.84 1.84 0.00 4.85
6521 11263 2.265589 TCCAGGGAGAAAAACGGAAC 57.734 50.000 0.00 0.00 0.00 3.62
6525 11267 2.504367 ACACATCCAGGGAGAAAAACG 58.496 47.619 0.00 0.00 0.00 3.60
6528 11270 3.849574 TCCATACACATCCAGGGAGAAAA 59.150 43.478 0.00 0.00 0.00 2.29
6529 11271 3.459828 TCCATACACATCCAGGGAGAAA 58.540 45.455 0.00 0.00 0.00 2.52
6530 11272 3.129262 TCCATACACATCCAGGGAGAA 57.871 47.619 0.00 0.00 0.00 2.87
6531 11273 2.866923 TCCATACACATCCAGGGAGA 57.133 50.000 0.00 0.00 0.00 3.71
6532 11274 3.392285 TGAATCCATACACATCCAGGGAG 59.608 47.826 0.00 0.00 0.00 4.30
6533 11275 3.392285 CTGAATCCATACACATCCAGGGA 59.608 47.826 0.00 0.00 0.00 4.20
6534 11276 3.497405 CCTGAATCCATACACATCCAGGG 60.497 52.174 0.00 0.00 37.02 4.45
6535 11277 3.137176 ACCTGAATCCATACACATCCAGG 59.863 47.826 0.00 0.00 43.94 4.45
6536 11278 4.428294 ACCTGAATCCATACACATCCAG 57.572 45.455 0.00 0.00 0.00 3.86
6537 11279 4.018506 ACAACCTGAATCCATACACATCCA 60.019 41.667 0.00 0.00 0.00 3.41
6538 11280 4.526970 ACAACCTGAATCCATACACATCC 58.473 43.478 0.00 0.00 0.00 3.51
6539 11281 5.647658 TGAACAACCTGAATCCATACACATC 59.352 40.000 0.00 0.00 0.00 3.06
6540 11282 5.569355 TGAACAACCTGAATCCATACACAT 58.431 37.500 0.00 0.00 0.00 3.21
6541 11283 4.979335 TGAACAACCTGAATCCATACACA 58.021 39.130 0.00 0.00 0.00 3.72
6542 11284 5.245531 TCTGAACAACCTGAATCCATACAC 58.754 41.667 0.00 0.00 0.00 2.90
6543 11285 5.497464 TCTGAACAACCTGAATCCATACA 57.503 39.130 0.00 0.00 0.00 2.29
6544 11286 5.940470 ACTTCTGAACAACCTGAATCCATAC 59.060 40.000 0.00 0.00 0.00 2.39
6545 11287 5.939883 CACTTCTGAACAACCTGAATCCATA 59.060 40.000 0.00 0.00 0.00 2.74
6546 11288 4.763793 CACTTCTGAACAACCTGAATCCAT 59.236 41.667 0.00 0.00 0.00 3.41
6547 11289 4.136796 CACTTCTGAACAACCTGAATCCA 58.863 43.478 0.00 0.00 0.00 3.41
6548 11290 4.137543 ACACTTCTGAACAACCTGAATCC 58.862 43.478 0.00 0.00 0.00 3.01
6549 11291 5.296780 TCAACACTTCTGAACAACCTGAATC 59.703 40.000 0.00 0.00 0.00 2.52
6550 11292 5.066505 GTCAACACTTCTGAACAACCTGAAT 59.933 40.000 0.00 0.00 0.00 2.57
6551 11293 4.394920 GTCAACACTTCTGAACAACCTGAA 59.605 41.667 0.00 0.00 0.00 3.02
6552 11294 3.938963 GTCAACACTTCTGAACAACCTGA 59.061 43.478 0.00 0.00 0.00 3.86
6553 11295 3.242413 CGTCAACACTTCTGAACAACCTG 60.242 47.826 0.00 0.00 0.00 4.00
6554 11296 2.936498 CGTCAACACTTCTGAACAACCT 59.064 45.455 0.00 0.00 0.00 3.50
6555 11297 2.538939 GCGTCAACACTTCTGAACAACC 60.539 50.000 0.00 0.00 0.00 3.77
6556 11298 2.351726 AGCGTCAACACTTCTGAACAAC 59.648 45.455 0.00 0.00 0.00 3.32
6557 11299 2.351418 CAGCGTCAACACTTCTGAACAA 59.649 45.455 0.00 0.00 0.00 2.83
6558 11300 1.933181 CAGCGTCAACACTTCTGAACA 59.067 47.619 0.00 0.00 0.00 3.18
6566 11308 1.130373 CAAACACACAGCGTCAACACT 59.870 47.619 0.00 0.00 0.00 3.55
6576 11318 2.092524 GCAACAAACAGCAAACACACAG 59.907 45.455 0.00 0.00 0.00 3.66
7017 11841 6.763610 GCCTTATTACAACTCTACTTGCTGAT 59.236 38.462 0.00 0.00 0.00 2.90
7023 11847 4.682589 GCCGGCCTTATTACAACTCTACTT 60.683 45.833 18.11 0.00 0.00 2.24
7102 11926 1.743252 GCTGGAGGAACGAGGCAAG 60.743 63.158 0.00 0.00 0.00 4.01
7103 11927 2.347490 GCTGGAGGAACGAGGCAA 59.653 61.111 0.00 0.00 0.00 4.52
7104 11928 3.706373 GGCTGGAGGAACGAGGCA 61.706 66.667 0.00 0.00 45.99 4.75
7174 11999 4.044336 TGAAGCGCCAAATATGAAATGG 57.956 40.909 2.29 0.00 37.29 3.16
7177 12002 2.159254 GCCTGAAGCGCCAAATATGAAA 60.159 45.455 2.29 0.00 0.00 2.69
7305 12132 0.892814 TGGTTCCATCAATGCACGCA 60.893 50.000 0.00 0.00 0.00 5.24
7347 12174 1.239347 GCCAAAGAGTGACCAGAACC 58.761 55.000 0.00 0.00 0.00 3.62
7350 12177 0.976641 ATCGCCAAAGAGTGACCAGA 59.023 50.000 0.00 0.00 0.00 3.86
7376 12203 2.245159 TCATGAATGGCCTTCTAGCG 57.755 50.000 3.32 0.00 34.75 4.26
7380 12207 5.750352 ATTTTGTTCATGAATGGCCTTCT 57.250 34.783 12.12 0.00 34.75 2.85
7449 12278 7.433708 TTCGTATGAGAAGCTTCAAATTCAA 57.566 32.000 27.57 9.43 0.00 2.69
7497 12326 1.371183 CCACTTCCCTGCGAGACAA 59.629 57.895 0.00 0.00 0.00 3.18
7501 13808 4.101448 CCCCCACTTCCCTGCGAG 62.101 72.222 0.00 0.00 0.00 5.03
7503 13810 3.966543 AACCCCCACTTCCCTGCG 61.967 66.667 0.00 0.00 0.00 5.18
7511 13818 1.134438 GGAAGAGTCCAACCCCCACT 61.134 60.000 0.00 0.00 44.26 4.00
7537 13844 4.851010 TCAACGTTAAACTTAGCAAAGCC 58.149 39.130 0.00 0.00 36.05 4.35
7551 13860 3.574396 TGAAAATTGCCCCATCAACGTTA 59.426 39.130 0.00 0.00 0.00 3.18
7570 13879 5.771666 AGAACCTGAATTTGAGCAATCTGAA 59.228 36.000 0.00 0.00 0.00 3.02
7571 13880 5.319453 AGAACCTGAATTTGAGCAATCTGA 58.681 37.500 0.00 0.00 0.00 3.27
7637 13946 3.321968 TCATGATAGTGGATGGTCGAAGG 59.678 47.826 0.00 0.00 0.00 3.46
7649 13958 7.443272 TGCTGGATCTAAAACATCATGATAGTG 59.557 37.037 8.15 0.00 0.00 2.74
7653 13962 6.832384 AGTTGCTGGATCTAAAACATCATGAT 59.168 34.615 1.18 1.18 0.00 2.45
7679 13988 1.535462 GCAACAGGCTAAAGCTTCGAA 59.465 47.619 0.00 0.00 41.70 3.71
7696 14005 1.406069 GCTAGAGCTAGTGCCTTGCAA 60.406 52.381 0.00 0.00 38.05 4.08
7699 14008 0.741326 TCGCTAGAGCTAGTGCCTTG 59.259 55.000 12.11 0.00 41.93 3.61
7772 14081 8.137437 CACCAGAAACAGATTTGATAACTTTGT 58.863 33.333 0.00 0.00 0.00 2.83
7773 14082 7.115378 GCACCAGAAACAGATTTGATAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
7774 14083 7.147976 GCACCAGAAACAGATTTGATAACTTT 58.852 34.615 0.00 0.00 0.00 2.66
7778 14087 5.076182 TGGCACCAGAAACAGATTTGATAA 58.924 37.500 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.