Multiple sequence alignment - TraesCS4D01G234800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G234800 chr4D 100.000 8219 0 0 1 8219 395365416 395373634 0.000000e+00 15178.0
1 TraesCS4D01G234800 chr4D 91.304 115 9 1 5953 6066 82019164 82019050 1.100000e-33 156.0
2 TraesCS4D01G234800 chr4B 93.892 4846 181 48 682 5473 486263294 486268078 0.000000e+00 7203.0
3 TraesCS4D01G234800 chr4B 95.401 1609 60 10 6064 7666 486270480 486272080 0.000000e+00 2549.0
4 TraesCS4D01G234800 chr4B 94.672 488 25 1 5469 5956 486268135 486268621 0.000000e+00 756.0
5 TraesCS4D01G234800 chr4B 87.215 571 33 13 7684 8219 486274892 486275457 1.520000e-171 614.0
6 TraesCS4D01G234800 chr4B 95.000 140 3 2 7670 7807 486274176 486274313 5.000000e-52 217.0
7 TraesCS4D01G234800 chr4B 93.056 72 4 1 7882 7952 486274821 486274892 4.060000e-18 104.0
8 TraesCS4D01G234800 chr4A 94.039 4462 152 44 698 5104 76923310 76927712 0.000000e+00 6661.0
9 TraesCS4D01G234800 chr4A 96.025 629 21 4 6919 7546 76931945 76932570 0.000000e+00 1020.0
10 TraesCS4D01G234800 chr4A 92.690 684 17 19 6064 6722 76930915 76931590 0.000000e+00 955.0
11 TraesCS4D01G234800 chr4A 93.548 496 20 2 5469 5956 76928341 76928832 0.000000e+00 728.0
12 TraesCS4D01G234800 chr4A 85.507 690 44 23 7550 8219 76932742 76933395 0.000000e+00 669.0
13 TraesCS4D01G234800 chr4A 98.916 369 3 1 5102 5469 76927912 76928280 0.000000e+00 658.0
14 TraesCS4D01G234800 chr4A 85.970 335 30 10 110 434 76866237 76866564 7.900000e-90 342.0
15 TraesCS4D01G234800 chr4A 92.391 184 12 2 6757 6938 76931747 76931930 2.280000e-65 261.0
16 TraesCS4D01G234800 chr4A 84.348 115 14 4 482 596 76866886 76866996 8.720000e-20 110.0
17 TraesCS4D01G234800 chr7A 92.982 114 8 0 5953 6066 550793313 550793200 5.100000e-37 167.0
18 TraesCS4D01G234800 chr1D 92.982 114 8 0 5953 6066 189175092 189175205 5.100000e-37 167.0
19 TraesCS4D01G234800 chr1D 95.556 90 4 0 7935 8024 22889004 22888915 2.390000e-30 145.0
20 TraesCS4D01G234800 chr1D 95.506 89 3 1 7936 8024 22871574 22871487 3.090000e-29 141.0
21 TraesCS4D01G234800 chr1D 93.103 58 4 0 440 497 332067417 332067474 1.470000e-12 86.1
22 TraesCS4D01G234800 chr1D 73.617 235 50 9 268 497 111103013 111103240 6.840000e-11 80.5
23 TraesCS4D01G234800 chr1B 92.982 114 8 0 5953 6066 277448071 277447958 5.100000e-37 167.0
24 TraesCS4D01G234800 chr1B 95.604 91 3 1 7936 8025 38911785 38911875 2.390000e-30 145.0
25 TraesCS4D01G234800 chr6A 92.105 114 9 0 5953 6066 539903635 539903522 2.370000e-35 161.0
26 TraesCS4D01G234800 chr3D 92.105 114 9 0 5953 6066 602055982 602056095 2.370000e-35 161.0
27 TraesCS4D01G234800 chr3D 100.000 29 0 0 268 296 575478197 575478225 4.000000e-03 54.7
28 TraesCS4D01G234800 chr2B 92.105 114 9 0 5953 6066 37781842 37781955 2.370000e-35 161.0
29 TraesCS4D01G234800 chr2B 92.105 114 9 0 5953 6066 264405451 264405338 2.370000e-35 161.0
30 TraesCS4D01G234800 chr2B 94.444 36 1 1 475 510 586812334 586812300 4.000000e-03 54.7
31 TraesCS4D01G234800 chr3A 91.228 114 10 0 5953 6066 447518795 447518908 1.100000e-33 156.0
32 TraesCS4D01G234800 chr5B 95.604 91 3 1 7936 8026 70271997 70272086 2.390000e-30 145.0
33 TraesCS4D01G234800 chr1A 96.591 88 2 1 7936 8023 24303432 24303346 2.390000e-30 145.0
34 TraesCS4D01G234800 chr1A 95.556 90 3 1 7936 8024 23905648 23905559 8.600000e-30 143.0
35 TraesCS4D01G234800 chr2D 92.079 101 5 2 7936 8034 313227919 313228018 1.110000e-28 139.0
36 TraesCS4D01G234800 chr5D 88.333 60 6 1 439 497 436213621 436213562 4.120000e-08 71.3
37 TraesCS4D01G234800 chr5D 88.636 44 5 0 443 486 115395149 115395192 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G234800 chr4D 395365416 395373634 8218 False 15178.000000 15178 100.000000 1 8219 1 chr4D.!!$F1 8218
1 TraesCS4D01G234800 chr4B 486263294 486275457 12163 False 1907.166667 7203 93.206000 682 8219 6 chr4B.!!$F1 7537
2 TraesCS4D01G234800 chr4A 76923310 76933395 10085 False 1564.571429 6661 93.302286 698 8219 7 chr4A.!!$F2 7521
3 TraesCS4D01G234800 chr4A 76866237 76866996 759 False 226.000000 342 85.159000 110 596 2 chr4A.!!$F1 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 772 0.328926 GGACCCAATAAACCCGGACA 59.671 55.000 0.73 0.00 0.00 4.02 F
1288 1592 1.795170 GATGTTGCTGTTGGTGGCGT 61.795 55.000 0.00 0.00 0.00 5.68 F
2865 3192 1.152819 ATCCGCTGATGCAAGCCAT 60.153 52.632 4.82 0.00 40.23 4.40 F
4248 4605 1.001974 AGCCGCATTGTCAGTGAGTAA 59.998 47.619 0.00 0.00 0.00 2.24 F
5319 5886 1.535462 CCAGACGCGAAAGAAATTGGT 59.465 47.619 15.93 0.00 0.00 3.67 F
6849 9635 0.325602 CCAATGTTTTGGCATGCCCT 59.674 50.000 33.44 8.61 45.71 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 2572 0.463833 GTCCCTAAGCCCAACATCCG 60.464 60.000 0.0 0.0 0.00 4.18 R
3278 3608 0.896226 GAGTAAGGAGGTTGCCGTCT 59.104 55.000 0.0 0.0 0.00 4.18 R
4332 4689 0.591170 GCTTGCTAACAGCCAAACGA 59.409 50.000 0.0 0.0 41.51 3.85 R
5564 6200 2.880890 ACAATCAGTTCACAGGAAGCAC 59.119 45.455 0.0 0.0 32.62 4.40 R
7146 9967 0.328258 ACCTTACCGCCAGCTTCATT 59.672 50.000 0.0 0.0 0.00 2.57 R
7903 13706 0.908910 TTTGCTCTCGGGCTCCATAA 59.091 50.000 0.0 0.0 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.804677 GTTTCCATATATCCATGTTTGTGCA 58.195 36.000 0.00 0.00 0.00 4.57
25 26 7.436118 GTTTCCATATATCCATGTTTGTGCAT 58.564 34.615 0.00 0.00 0.00 3.96
26 27 7.600231 TTCCATATATCCATGTTTGTGCATT 57.400 32.000 0.00 0.00 0.00 3.56
27 28 6.983984 TCCATATATCCATGTTTGTGCATTG 58.016 36.000 0.00 0.00 0.00 2.82
28 29 6.550481 TCCATATATCCATGTTTGTGCATTGT 59.450 34.615 0.00 0.00 0.00 2.71
29 30 7.069702 TCCATATATCCATGTTTGTGCATTGTT 59.930 33.333 0.00 0.00 0.00 2.83
30 31 8.358895 CCATATATCCATGTTTGTGCATTGTTA 58.641 33.333 0.00 0.00 0.00 2.41
31 32 9.917129 CATATATCCATGTTTGTGCATTGTTAT 57.083 29.630 0.00 0.00 0.00 1.89
33 34 5.718724 TCCATGTTTGTGCATTGTTATCA 57.281 34.783 0.00 0.00 0.00 2.15
34 35 6.283544 TCCATGTTTGTGCATTGTTATCAT 57.716 33.333 0.00 0.00 0.00 2.45
35 36 7.401955 TCCATGTTTGTGCATTGTTATCATA 57.598 32.000 0.00 0.00 0.00 2.15
36 37 8.009622 TCCATGTTTGTGCATTGTTATCATAT 57.990 30.769 0.00 0.00 0.00 1.78
37 38 8.476447 TCCATGTTTGTGCATTGTTATCATATT 58.524 29.630 0.00 0.00 0.00 1.28
38 39 9.747293 CCATGTTTGTGCATTGTTATCATATTA 57.253 29.630 0.00 0.00 0.00 0.98
60 61 7.667043 TTATTCGTTTTATCAGACAACTGCT 57.333 32.000 0.00 0.00 43.17 4.24
61 62 6.560253 ATTCGTTTTATCAGACAACTGCTT 57.440 33.333 0.00 0.00 43.17 3.91
62 63 5.342806 TCGTTTTATCAGACAACTGCTTG 57.657 39.130 0.00 0.00 43.17 4.01
63 64 5.053811 TCGTTTTATCAGACAACTGCTTGA 58.946 37.500 0.00 0.00 43.17 3.02
64 65 5.177511 TCGTTTTATCAGACAACTGCTTGAG 59.822 40.000 0.00 0.00 43.17 3.02
65 66 5.177511 CGTTTTATCAGACAACTGCTTGAGA 59.822 40.000 0.00 0.00 43.17 3.27
66 67 6.366630 GTTTTATCAGACAACTGCTTGAGAC 58.633 40.000 0.00 0.00 43.17 3.36
67 68 3.758755 ATCAGACAACTGCTTGAGACA 57.241 42.857 0.00 0.00 43.17 3.41
68 69 3.758755 TCAGACAACTGCTTGAGACAT 57.241 42.857 0.00 0.00 43.17 3.06
69 70 4.077300 TCAGACAACTGCTTGAGACATT 57.923 40.909 0.00 0.00 43.17 2.71
70 71 4.060900 TCAGACAACTGCTTGAGACATTC 58.939 43.478 0.00 0.00 43.17 2.67
71 72 4.063689 CAGACAACTGCTTGAGACATTCT 58.936 43.478 0.00 0.00 37.33 2.40
72 73 4.514441 CAGACAACTGCTTGAGACATTCTT 59.486 41.667 0.00 0.00 37.33 2.52
73 74 4.514441 AGACAACTGCTTGAGACATTCTTG 59.486 41.667 0.00 0.00 0.00 3.02
74 75 4.202441 ACAACTGCTTGAGACATTCTTGT 58.798 39.130 0.00 0.00 39.32 3.16
75 76 4.641989 ACAACTGCTTGAGACATTCTTGTT 59.358 37.500 0.00 0.00 35.79 2.83
76 77 5.822519 ACAACTGCTTGAGACATTCTTGTTA 59.177 36.000 0.00 0.00 35.79 2.41
77 78 6.017605 ACAACTGCTTGAGACATTCTTGTTAG 60.018 38.462 0.00 0.00 35.79 2.34
78 79 5.858381 ACTGCTTGAGACATTCTTGTTAGA 58.142 37.500 0.00 0.00 35.79 2.10
79 80 6.291377 ACTGCTTGAGACATTCTTGTTAGAA 58.709 36.000 0.00 0.00 44.16 2.10
80 81 6.767902 ACTGCTTGAGACATTCTTGTTAGAAA 59.232 34.615 0.00 0.00 43.32 2.52
81 82 7.041508 ACTGCTTGAGACATTCTTGTTAGAAAG 60.042 37.037 0.00 0.00 43.32 2.62
82 83 6.082984 GCTTGAGACATTCTTGTTAGAAAGC 58.917 40.000 0.00 0.00 43.32 3.51
83 84 6.293626 GCTTGAGACATTCTTGTTAGAAAGCA 60.294 38.462 0.00 0.00 43.32 3.91
84 85 7.574592 GCTTGAGACATTCTTGTTAGAAAGCAT 60.575 37.037 0.00 0.00 43.32 3.79
85 86 7.137490 TGAGACATTCTTGTTAGAAAGCATG 57.863 36.000 0.00 0.00 43.32 4.06
86 87 5.947443 AGACATTCTTGTTAGAAAGCATGC 58.053 37.500 10.51 10.51 43.32 4.06
87 88 5.709164 AGACATTCTTGTTAGAAAGCATGCT 59.291 36.000 16.30 16.30 43.32 3.79
88 89 6.208204 AGACATTCTTGTTAGAAAGCATGCTT 59.792 34.615 27.21 27.21 43.32 3.91
89 90 7.391554 AGACATTCTTGTTAGAAAGCATGCTTA 59.608 33.333 32.12 15.25 43.32 3.09
90 91 8.059798 ACATTCTTGTTAGAAAGCATGCTTAT 57.940 30.769 32.12 24.58 43.32 1.73
91 92 9.177608 ACATTCTTGTTAGAAAGCATGCTTATA 57.822 29.630 32.12 23.59 43.32 0.98
122 123 8.888579 AAAAGATAACTATAGGTTGGATGTCG 57.111 34.615 4.43 0.00 38.75 4.35
124 125 7.598759 AGATAACTATAGGTTGGATGTCGTT 57.401 36.000 4.43 0.00 38.75 3.85
125 126 8.019656 AGATAACTATAGGTTGGATGTCGTTT 57.980 34.615 4.43 0.00 38.75 3.60
144 146 3.591196 TTTTTCCGAATCCCTGCATTG 57.409 42.857 0.00 0.00 0.00 2.82
147 149 0.617935 TCCGAATCCCTGCATTGACA 59.382 50.000 0.00 0.00 0.00 3.58
161 163 6.529125 CCTGCATTGACAAAAACATATGACTC 59.471 38.462 10.38 0.00 0.00 3.36
205 209 7.928103 TGCTTCATAATTTTTGTGCAAACATT 58.072 26.923 11.96 11.96 35.57 2.71
206 210 8.404000 TGCTTCATAATTTTTGTGCAAACATTT 58.596 25.926 12.37 3.85 33.99 2.32
265 269 8.517062 AAGATGTTTAATCTCTTGCTAAGCAT 57.483 30.769 0.00 0.00 38.76 3.79
280 291 5.298276 TGCTAAGCATTTCCGGGTTTATTAG 59.702 40.000 0.00 5.34 31.71 1.73
309 320 7.880195 CCCATTGTATTTTGGGTAAAACATTGA 59.120 33.333 0.00 0.00 46.38 2.57
409 420 6.226787 TCGGACAATAAAATTTTTGTGGCAT 58.773 32.000 9.06 0.00 36.25 4.40
410 421 6.367422 TCGGACAATAAAATTTTTGTGGCATC 59.633 34.615 9.06 2.37 36.25 3.91
411 422 6.368516 CGGACAATAAAATTTTTGTGGCATCT 59.631 34.615 9.06 0.00 36.25 2.90
446 620 9.979578 ATGTTTTGCTATTTTGAACTATGTCAA 57.020 25.926 0.00 0.00 35.72 3.18
482 656 1.005097 ACGAAGGGACCCAATAAACCC 59.995 52.381 14.60 0.00 42.36 4.11
487 772 0.328926 GGACCCAATAAACCCGGACA 59.671 55.000 0.73 0.00 0.00 4.02
503 788 4.090090 CCGGACAGAGGGAGTATCATATT 58.910 47.826 0.00 0.00 36.25 1.28
505 790 5.715279 CCGGACAGAGGGAGTATCATATTAA 59.285 44.000 0.00 0.00 36.25 1.40
506 791 6.127591 CCGGACAGAGGGAGTATCATATTAAG 60.128 46.154 0.00 0.00 36.25 1.85
507 792 6.659668 CGGACAGAGGGAGTATCATATTAAGA 59.340 42.308 0.00 0.00 36.25 2.10
509 794 9.041354 GGACAGAGGGAGTATCATATTAAGATT 57.959 37.037 0.00 0.00 36.25 2.40
510 795 9.868277 GACAGAGGGAGTATCATATTAAGATTG 57.132 37.037 0.00 0.00 36.25 2.67
548 833 8.897752 AGCAATTCATAGATTTTTAGTGGTCTC 58.102 33.333 0.00 0.00 0.00 3.36
553 838 8.842358 TCATAGATTTTTAGTGGTCTCGTTTT 57.158 30.769 0.00 0.00 0.00 2.43
566 851 9.280174 AGTGGTCTCGTTTTATTGAATAAAAGA 57.720 29.630 20.01 17.18 43.21 2.52
567 852 9.326339 GTGGTCTCGTTTTATTGAATAAAAGAC 57.674 33.333 20.01 20.88 43.21 3.01
568 853 9.058174 TGGTCTCGTTTTATTGAATAAAAGACA 57.942 29.630 26.20 17.01 43.21 3.41
603 888 9.449719 AGAAATATGAACCGAAAATTCTACTGT 57.550 29.630 0.00 0.00 0.00 3.55
609 894 8.842358 TGAACCGAAAATTCTACTGTATTTCT 57.158 30.769 8.94 0.00 0.00 2.52
610 895 9.932207 TGAACCGAAAATTCTACTGTATTTCTA 57.068 29.630 8.94 0.00 0.00 2.10
612 897 8.403606 ACCGAAAATTCTACTGTATTTCTACG 57.596 34.615 8.94 0.00 0.00 3.51
613 898 8.246180 ACCGAAAATTCTACTGTATTTCTACGA 58.754 33.333 8.94 0.00 0.00 3.43
614 899 9.079833 CCGAAAATTCTACTGTATTTCTACGAA 57.920 33.333 8.94 0.01 0.00 3.85
651 936 9.720769 TTTAGGATTCTACGAAAATCTTTCTGT 57.279 29.630 0.00 1.28 34.29 3.41
652 937 7.835634 AGGATTCTACGAAAATCTTTCTGTC 57.164 36.000 0.00 0.00 34.29 3.51
653 938 6.819146 AGGATTCTACGAAAATCTTTCTGTCC 59.181 38.462 0.00 0.00 34.29 4.02
654 939 6.594159 GGATTCTACGAAAATCTTTCTGTCCA 59.406 38.462 0.00 0.00 34.29 4.02
655 940 7.119262 GGATTCTACGAAAATCTTTCTGTCCAA 59.881 37.037 0.00 0.00 34.29 3.53
656 941 7.795482 TTCTACGAAAATCTTTCTGTCCAAA 57.205 32.000 0.00 0.00 0.00 3.28
657 942 7.979444 TCTACGAAAATCTTTCTGTCCAAAT 57.021 32.000 0.00 0.00 0.00 2.32
658 943 7.806690 TCTACGAAAATCTTTCTGTCCAAATG 58.193 34.615 0.00 0.00 0.00 2.32
659 944 6.391227 ACGAAAATCTTTCTGTCCAAATGT 57.609 33.333 0.00 0.00 0.00 2.71
660 945 7.504924 ACGAAAATCTTTCTGTCCAAATGTA 57.495 32.000 0.00 0.00 0.00 2.29
661 946 8.110860 ACGAAAATCTTTCTGTCCAAATGTAT 57.889 30.769 0.00 0.00 0.00 2.29
662 947 8.576442 ACGAAAATCTTTCTGTCCAAATGTATT 58.424 29.630 0.00 0.00 0.00 1.89
663 948 9.410556 CGAAAATCTTTCTGTCCAAATGTATTT 57.589 29.630 0.00 0.00 0.00 1.40
667 952 9.525826 AATCTTTCTGTCCAAATGTATTTCTCT 57.474 29.630 0.00 0.00 0.00 3.10
683 968 9.679661 TGTATTTCTCTATAAAATTCCACTGCA 57.320 29.630 0.00 0.00 0.00 4.41
687 972 8.635765 TTCTCTATAAAATTCCACTGCAAAGT 57.364 30.769 0.00 0.00 0.00 2.66
689 974 8.514594 TCTCTATAAAATTCCACTGCAAAGTTG 58.485 33.333 0.00 0.00 0.00 3.16
720 1005 2.598589 CGATTGGACCTCGTAACGAAA 58.401 47.619 0.00 0.00 34.74 3.46
725 1010 2.228582 TGGACCTCGTAACGAAATTCGA 59.771 45.455 22.92 0.00 43.74 3.71
734 1019 4.090930 CGTAACGAAATTCGAGTCCAACAT 59.909 41.667 22.92 0.00 43.74 2.71
1065 1369 2.158696 GCAGCCCTACATGAAGAAGGAT 60.159 50.000 0.00 0.00 31.64 3.24
1148 1452 2.770048 CTCCCCTGCCTACCCTGG 60.770 72.222 0.00 0.00 0.00 4.45
1173 1477 4.069232 CCTCGGCTCGGCTGTGAA 62.069 66.667 0.00 0.00 36.18 3.18
1174 1478 2.507992 CTCGGCTCGGCTGTGAAG 60.508 66.667 0.00 0.00 36.18 3.02
1175 1479 4.742201 TCGGCTCGGCTGTGAAGC 62.742 66.667 0.00 0.00 36.18 3.86
1288 1592 1.795170 GATGTTGCTGTTGGTGGCGT 61.795 55.000 0.00 0.00 0.00 5.68
1316 1620 2.251371 GCCTTGTTTGACGACGCC 59.749 61.111 0.00 0.00 0.00 5.68
1381 1686 3.806949 TTAGTTCAGAATTGGGGCTGT 57.193 42.857 0.00 0.00 33.90 4.40
1520 1825 4.179579 GATTCCGGTGGCGCTTGC 62.180 66.667 7.64 0.00 38.11 4.01
1646 1960 6.014647 AGGATATGCATGCTTTTGGTGATAT 58.985 36.000 20.33 10.62 26.07 1.63
1679 1993 5.181748 AGCTGGTTAGATGTGTCTTCATTC 58.818 41.667 0.00 0.00 35.87 2.67
1776 2090 8.807118 CAACTAGGGCTTATATCTGATTAGTGA 58.193 37.037 0.00 0.00 0.00 3.41
1803 2117 2.111384 AGGACATCGGTTATCTGTGCT 58.889 47.619 0.00 0.00 36.84 4.40
1897 2211 5.309806 AGGTAGTTCTGTGTTAAATGGACCT 59.690 40.000 0.00 0.00 0.00 3.85
1934 2248 2.639839 TGTCCCTTTTTCCTCCTCAGAG 59.360 50.000 0.00 0.00 40.09 3.35
1998 2312 6.565999 GCCCGTGCTAGTCAATCAATAAATAC 60.566 42.308 0.00 0.00 33.53 1.89
2042 2358 7.877097 TCATAAGTTTTTATGCATTTTGGCTGT 59.123 29.630 3.54 0.00 43.77 4.40
2083 2399 6.129273 CGCTTGAAAATCTTGAGAACACAATG 60.129 38.462 0.00 0.00 0.00 2.82
2107 2423 6.146347 TGTGGTTTTACTTGTTGCAGAAAAAC 59.854 34.615 0.00 0.00 36.54 2.43
2249 2572 2.227388 CACAGGCACTTCTGATTGTTCC 59.773 50.000 0.00 0.00 34.60 3.62
2403 2729 3.053619 AGTGGTTTTGACCCTGAGTTTCT 60.054 43.478 0.00 0.00 0.00 2.52
2420 2746 6.038603 TGAGTTTCTGTTTGATCTTCTGTTGG 59.961 38.462 0.00 0.00 0.00 3.77
2686 3013 4.566004 TGAGCTGTATATATTTGCCCGTC 58.434 43.478 0.00 0.00 0.00 4.79
2794 3121 6.653989 AGGAGAGTCATTTACAAAGGTATGG 58.346 40.000 0.00 0.00 0.00 2.74
2795 3122 6.443849 AGGAGAGTCATTTACAAAGGTATGGA 59.556 38.462 0.00 0.00 0.00 3.41
2865 3192 1.152819 ATCCGCTGATGCAAGCCAT 60.153 52.632 4.82 0.00 40.23 4.40
2901 3228 3.190874 AGATCAAAAGAGCGATTCCGTC 58.809 45.455 0.00 0.00 38.24 4.79
2917 3247 6.074195 CGATTCCGTCGCAATATACCTTTTTA 60.074 38.462 0.00 0.00 44.33 1.52
2947 3277 5.929992 AGCCATTGTGATTTTGATCTTGTTG 59.070 36.000 0.00 0.00 0.00 3.33
2964 3294 8.812513 ATCTTGTTGTGATTTCTGATGGATAA 57.187 30.769 0.00 0.00 0.00 1.75
2965 3295 8.812513 TCTTGTTGTGATTTCTGATGGATAAT 57.187 30.769 0.00 0.00 0.00 1.28
2966 3296 9.246670 TCTTGTTGTGATTTCTGATGGATAATT 57.753 29.630 0.00 0.00 0.00 1.40
2967 3297 9.297586 CTTGTTGTGATTTCTGATGGATAATTG 57.702 33.333 0.00 0.00 0.00 2.32
2968 3298 7.774134 TGTTGTGATTTCTGATGGATAATTGG 58.226 34.615 0.00 0.00 0.00 3.16
2969 3299 7.614974 TGTTGTGATTTCTGATGGATAATTGGA 59.385 33.333 0.00 0.00 0.00 3.53
2970 3300 8.636213 GTTGTGATTTCTGATGGATAATTGGAT 58.364 33.333 0.00 0.00 0.00 3.41
2971 3301 9.865152 TTGTGATTTCTGATGGATAATTGGATA 57.135 29.630 0.00 0.00 0.00 2.59
3560 3890 2.025605 TCATGGCCTTGCTCTTCTTCAT 60.026 45.455 13.75 0.00 0.00 2.57
3586 3916 7.713507 TCAGGTATAAATTGTGTTCGGGAATAG 59.286 37.037 0.00 0.00 0.00 1.73
3697 4030 6.202226 GTTTTTGATGGAACTGAAGAGTGAC 58.798 40.000 0.00 0.00 30.61 3.67
3892 4248 5.396436 GGTCATATACTGGGCAGTACACTTT 60.396 44.000 0.00 0.00 45.61 2.66
3903 4259 6.484308 TGGGCAGTACACTTTTTACTAAGTTC 59.516 38.462 0.00 0.00 36.24 3.01
3960 4316 1.140852 TCACTAACTTGTGCACCAGCT 59.859 47.619 17.37 8.41 42.74 4.24
4004 4360 6.115446 TCAGTTGTCTGATAATGGTCCATTC 58.885 40.000 20.65 8.43 44.58 2.67
4095 4452 6.270064 AGTATTTTTGACTTTTGTGGAACCG 58.730 36.000 0.00 0.00 34.36 4.44
4239 4596 3.259064 TGTCTTAGTAAGCCGCATTGTC 58.741 45.455 4.93 0.00 0.00 3.18
4248 4605 1.001974 AGCCGCATTGTCAGTGAGTAA 59.998 47.619 0.00 0.00 0.00 2.24
4332 4689 3.008813 ACTTGCAGACCAGACAGAATGAT 59.991 43.478 0.00 0.00 39.69 2.45
4463 4820 5.246203 ACTTGTACTGGACTCTTGCAGAATA 59.754 40.000 0.00 0.00 43.79 1.75
4789 5149 5.034554 CATGTTGTCATGTGTCCTTGTAC 57.965 43.478 0.00 0.00 44.37 2.90
4790 5150 4.143986 TGTTGTCATGTGTCCTTGTACA 57.856 40.909 0.00 0.00 0.00 2.90
5085 5449 3.576982 AGTTCCCACTGAAGTATCGTTCA 59.423 43.478 0.00 0.00 34.79 3.18
5319 5886 1.535462 CCAGACGCGAAAGAAATTGGT 59.465 47.619 15.93 0.00 0.00 3.67
5540 6176 4.036144 CAGAAGCTCGTGTCTCATGATAGA 59.964 45.833 0.00 0.00 0.00 1.98
5564 6200 6.659824 ACTTGTTAGTCCCATGTTATTAGGG 58.340 40.000 0.00 0.00 44.22 3.53
5597 6233 3.372440 ACTGATTGTTTGATCCTCCCC 57.628 47.619 0.00 0.00 0.00 4.81
5613 6249 3.364549 CTCCCCAAAAATACTGCATCCA 58.635 45.455 0.00 0.00 0.00 3.41
5640 6276 8.830580 GCACATTTTCAACATCTATAGCTAGAA 58.169 33.333 0.00 0.00 37.52 2.10
5681 6317 1.824230 TGAAATTAAGCAGGCGCCATT 59.176 42.857 31.54 21.83 39.83 3.16
5819 6455 7.417612 ACAATCGAGCAATATGTTTGATTACC 58.582 34.615 8.70 0.00 38.93 2.85
5824 6460 3.966218 GCAATATGTTTGATTACCGACGC 59.034 43.478 0.00 0.00 0.00 5.19
5912 6556 5.646606 GTCACACCAGTTAAACAATGTTGT 58.353 37.500 0.00 0.00 44.72 3.32
5978 6937 5.288804 GCTACTGCAATTTCCAAACTTTGA 58.711 37.500 2.87 0.00 39.41 2.69
5984 6943 7.969508 ACTGCAATTTCCAAACTTTGAAAAATG 59.030 29.630 2.87 0.43 31.07 2.32
5991 6950 4.496175 CCAAACTTTGAAAAATGCCACTGC 60.496 41.667 2.87 0.00 38.26 4.40
6021 6980 9.604626 TTTTGCAAACTTTTAAAAATGTCACTG 57.395 25.926 12.39 0.00 0.00 3.66
6022 6981 6.770076 TGCAAACTTTTAAAAATGTCACTGC 58.230 32.000 1.66 8.05 32.68 4.40
6023 6982 6.369890 TGCAAACTTTTAAAAATGTCACTGCA 59.630 30.769 14.23 14.23 35.80 4.41
6024 6983 6.901357 GCAAACTTTTAAAAATGTCACTGCAG 59.099 34.615 13.48 13.48 32.52 4.41
6025 6984 7.201513 GCAAACTTTTAAAAATGTCACTGCAGA 60.202 33.333 23.35 0.00 32.52 4.26
6026 6985 7.755582 AACTTTTAAAAATGTCACTGCAGAC 57.244 32.000 23.35 10.19 38.99 3.51
6027 6986 7.100458 ACTTTTAAAAATGTCACTGCAGACT 57.900 32.000 23.35 0.00 39.27 3.24
6029 6988 8.034804 ACTTTTAAAAATGTCACTGCAGACTTT 58.965 29.630 23.35 10.84 39.27 2.66
6030 6989 7.754069 TTTAAAAATGTCACTGCAGACTTTG 57.246 32.000 23.35 8.36 39.27 2.77
6031 6990 5.581126 AAAAATGTCACTGCAGACTTTGA 57.419 34.783 23.35 10.95 39.27 2.69
6032 6991 5.581126 AAAATGTCACTGCAGACTTTGAA 57.419 34.783 23.35 5.22 39.27 2.69
6033 6992 5.581126 AAATGTCACTGCAGACTTTGAAA 57.419 34.783 23.35 9.18 39.27 2.69
6035 6994 5.581126 ATGTCACTGCAGACTTTGAAAAA 57.419 34.783 23.35 3.49 39.27 1.94
6037 6996 5.342433 TGTCACTGCAGACTTTGAAAAATG 58.658 37.500 23.35 3.24 39.27 2.32
6038 6997 4.207841 GTCACTGCAGACTTTGAAAAATGC 59.792 41.667 23.35 0.00 35.65 3.56
6039 6998 3.492011 CACTGCAGACTTTGAAAAATGCC 59.508 43.478 23.35 0.00 32.77 4.40
6040 6999 3.132646 ACTGCAGACTTTGAAAAATGCCA 59.867 39.130 23.35 0.00 32.77 4.92
6041 7000 4.121317 CTGCAGACTTTGAAAAATGCCAA 58.879 39.130 8.42 0.00 32.77 4.52
6042 7001 4.706035 TGCAGACTTTGAAAAATGCCAAT 58.294 34.783 6.30 0.00 32.77 3.16
6043 7002 4.512198 TGCAGACTTTGAAAAATGCCAATG 59.488 37.500 6.30 0.00 32.77 2.82
6044 7003 4.083696 GCAGACTTTGAAAAATGCCAATGG 60.084 41.667 0.00 0.00 0.00 3.16
6045 7004 5.299148 CAGACTTTGAAAAATGCCAATGGA 58.701 37.500 2.05 0.00 0.00 3.41
6046 7005 5.759273 CAGACTTTGAAAAATGCCAATGGAA 59.241 36.000 2.05 0.00 0.00 3.53
6048 7007 6.999871 AGACTTTGAAAAATGCCAATGGAAAT 59.000 30.769 2.05 0.00 0.00 2.17
6050 7009 6.771749 ACTTTGAAAAATGCCAATGGAAATGA 59.228 30.769 2.05 0.00 0.00 2.57
6051 7010 6.557291 TTGAAAAATGCCAATGGAAATGAC 57.443 33.333 2.05 0.00 0.00 3.06
6054 7013 6.715718 TGAAAAATGCCAATGGAAATGACATT 59.284 30.769 2.05 0.00 39.00 2.71
6057 7016 7.527568 AAATGCCAATGGAAATGACATTTTT 57.472 28.000 14.46 3.02 36.47 1.94
6058 7017 6.746745 ATGCCAATGGAAATGACATTTTTC 57.253 33.333 14.46 10.55 36.47 2.29
6061 7020 6.544931 TGCCAATGGAAATGACATTTTTCAAA 59.455 30.769 14.46 0.73 36.47 2.69
6062 7021 7.079475 GCCAATGGAAATGACATTTTTCAAAG 58.921 34.615 14.46 11.64 36.47 2.77
6183 8808 9.369904 CATAATGAAATTTAACCTCAACCAAGG 57.630 33.333 0.00 0.00 39.01 3.61
6286 8937 2.916269 TGGTGTGGAGGATGAATACCAA 59.084 45.455 0.00 0.00 34.12 3.67
6556 9207 7.050377 CCTATTCATCCTTAGCTGTTTCTTCA 58.950 38.462 0.00 0.00 0.00 3.02
6564 9215 5.125097 CCTTAGCTGTTTCTTCAAGCATCAT 59.875 40.000 0.00 0.00 0.00 2.45
6717 9369 4.496360 CAGTGGCATGCAACATTCAATTA 58.504 39.130 26.79 0.00 0.00 1.40
6849 9635 0.325602 CCAATGTTTTGGCATGCCCT 59.674 50.000 33.44 8.61 45.71 5.19
6876 9662 4.640647 CCCTTTGCCCACTCTAGTTTATTC 59.359 45.833 0.00 0.00 0.00 1.75
6880 9666 4.627015 TGCCCACTCTAGTTTATTCCCTA 58.373 43.478 0.00 0.00 0.00 3.53
6881 9667 5.034200 TGCCCACTCTAGTTTATTCCCTAA 58.966 41.667 0.00 0.00 0.00 2.69
6956 9776 4.105697 TCTTTGTAGGGTCATCTTGGGTTT 59.894 41.667 0.00 0.00 0.00 3.27
6968 9788 4.886247 TCTTGGGTTTGTGAACTAAACG 57.114 40.909 0.00 0.00 38.57 3.60
7014 9835 6.422701 TGAAAGTTGACTACAATGGTTACTCG 59.577 38.462 0.00 0.00 38.32 4.18
7119 9940 6.430925 TCAAGGTTCTTGTCAGGTTATCATTG 59.569 38.462 7.42 0.00 0.00 2.82
7250 10071 3.249189 TCTGCCCCTGCCGAAACT 61.249 61.111 0.00 0.00 36.33 2.66
7403 10227 5.065704 TGCTCAGAAGTCAGAAGTGTATC 57.934 43.478 0.00 0.00 0.00 2.24
7404 10228 4.769488 TGCTCAGAAGTCAGAAGTGTATCT 59.231 41.667 0.00 0.00 0.00 1.98
7406 10230 5.576384 GCTCAGAAGTCAGAAGTGTATCTTG 59.424 44.000 0.00 0.00 36.40 3.02
7407 10231 6.656632 TCAGAAGTCAGAAGTGTATCTTGT 57.343 37.500 0.00 0.00 36.40 3.16
7408 10232 7.575909 GCTCAGAAGTCAGAAGTGTATCTTGTA 60.576 40.741 0.00 0.00 36.40 2.41
7411 10235 5.662674 AGTCAGAAGTGTATCTTGTACCC 57.337 43.478 0.00 0.00 36.40 3.69
7412 10236 5.084519 AGTCAGAAGTGTATCTTGTACCCA 58.915 41.667 0.00 0.00 36.40 4.51
7454 10278 3.855950 GCACAGTTAATTTCTGAGCATGC 59.144 43.478 10.51 10.51 44.49 4.06
7468 10292 4.252878 TGAGCATGCTTTCGTCTCAAATA 58.747 39.130 23.61 0.00 31.62 1.40
7546 10371 2.946329 TCTGCTAGTCGAATCTCTCACC 59.054 50.000 0.00 0.00 0.00 4.02
7627 10621 5.697067 TGGAGCCTTTACTTTGGAAACTTA 58.303 37.500 0.00 0.00 0.00 2.24
7716 13501 9.965824 CTGTAAAGTTTCATGGTGAAAAATACT 57.034 29.630 6.69 0.00 46.53 2.12
7796 13581 6.480524 TGTACAGCTCACATCAAAATGTAC 57.519 37.500 0.00 5.80 44.41 2.90
7799 13584 6.639632 ACAGCTCACATCAAAATGTACTTT 57.360 33.333 0.00 0.00 44.41 2.66
7903 13706 7.056006 AGTTGATTTTTGGAAAATTCAGGCTT 58.944 30.769 8.60 0.00 38.62 4.35
8037 13841 9.504708 AATGGATTTGTGAAAGCAAATATTTCA 57.495 25.926 0.00 0.00 45.68 2.69
8038 13842 8.537049 TGGATTTGTGAAAGCAAATATTTCAG 57.463 30.769 0.00 0.00 45.68 3.02
8041 13845 9.195411 GATTTGTGAAAGCAAATATTTCAGTGA 57.805 29.630 0.00 0.00 45.68 3.41
8048 13852 9.674824 GAAAGCAAATATTTCAGTGATATCTGG 57.325 33.333 3.98 0.00 36.79 3.86
8118 13927 0.962356 CCACGCCATTTGCTCCTCTT 60.962 55.000 0.00 0.00 38.05 2.85
8138 13947 1.380403 CCAACTTCCGTGGTTGTGCA 61.380 55.000 10.08 0.00 41.47 4.57
8145 13965 2.730094 GTGGTTGTGCAGCCCAAG 59.270 61.111 2.69 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.600231 ATGCACAAACATGGATATATGGAAA 57.400 32.000 0.00 0.00 32.32 3.13
2 3 7.069702 ACAATGCACAAACATGGATATATGGAA 59.930 33.333 0.00 0.00 29.36 3.53
3 4 6.550481 ACAATGCACAAACATGGATATATGGA 59.450 34.615 0.00 0.00 29.36 3.41
4 5 6.751157 ACAATGCACAAACATGGATATATGG 58.249 36.000 0.00 0.00 29.36 2.74
5 6 9.917129 ATAACAATGCACAAACATGGATATATG 57.083 29.630 0.00 0.00 29.36 1.78
7 8 9.129532 TGATAACAATGCACAAACATGGATATA 57.870 29.630 0.00 0.00 29.36 0.86
8 9 8.009622 TGATAACAATGCACAAACATGGATAT 57.990 30.769 0.00 0.00 29.36 1.63
9 10 7.401955 TGATAACAATGCACAAACATGGATA 57.598 32.000 0.00 0.00 29.36 2.59
10 11 6.283544 TGATAACAATGCACAAACATGGAT 57.716 33.333 0.00 0.00 30.96 3.41
11 12 5.718724 TGATAACAATGCACAAACATGGA 57.281 34.783 0.00 0.00 0.00 3.41
12 13 8.651391 AATATGATAACAATGCACAAACATGG 57.349 30.769 0.00 0.00 0.00 3.66
34 35 9.378551 AGCAGTTGTCTGATAAAACGAATAATA 57.621 29.630 0.00 0.00 43.76 0.98
35 36 8.268850 AGCAGTTGTCTGATAAAACGAATAAT 57.731 30.769 0.00 0.00 43.76 1.28
36 37 7.667043 AGCAGTTGTCTGATAAAACGAATAA 57.333 32.000 0.00 0.00 43.76 1.40
37 38 7.386573 TCAAGCAGTTGTCTGATAAAACGAATA 59.613 33.333 0.00 0.00 43.76 1.75
38 39 6.204688 TCAAGCAGTTGTCTGATAAAACGAAT 59.795 34.615 0.00 0.00 43.76 3.34
39 40 5.525745 TCAAGCAGTTGTCTGATAAAACGAA 59.474 36.000 0.00 0.00 43.76 3.85
40 41 5.053811 TCAAGCAGTTGTCTGATAAAACGA 58.946 37.500 0.00 0.00 43.76 3.85
41 42 5.177511 TCTCAAGCAGTTGTCTGATAAAACG 59.822 40.000 0.00 0.00 43.76 3.60
42 43 6.017934 TGTCTCAAGCAGTTGTCTGATAAAAC 60.018 38.462 0.00 0.00 43.76 2.43
43 44 6.054941 TGTCTCAAGCAGTTGTCTGATAAAA 58.945 36.000 0.00 0.00 43.76 1.52
44 45 5.610398 TGTCTCAAGCAGTTGTCTGATAAA 58.390 37.500 0.00 0.00 43.76 1.40
45 46 5.213891 TGTCTCAAGCAGTTGTCTGATAA 57.786 39.130 0.00 0.00 43.76 1.75
46 47 4.871933 TGTCTCAAGCAGTTGTCTGATA 57.128 40.909 0.00 0.00 43.76 2.15
47 48 3.758755 TGTCTCAAGCAGTTGTCTGAT 57.241 42.857 0.00 0.00 43.76 2.90
48 49 3.758755 ATGTCTCAAGCAGTTGTCTGA 57.241 42.857 0.00 0.00 43.76 3.27
49 50 4.063689 AGAATGTCTCAAGCAGTTGTCTG 58.936 43.478 0.00 0.00 43.87 3.51
50 51 4.348863 AGAATGTCTCAAGCAGTTGTCT 57.651 40.909 0.00 0.00 34.98 3.41
51 52 4.274459 ACAAGAATGTCTCAAGCAGTTGTC 59.726 41.667 0.00 0.00 33.41 3.18
52 53 4.202441 ACAAGAATGTCTCAAGCAGTTGT 58.798 39.130 0.00 0.00 33.41 3.32
53 54 4.825546 ACAAGAATGTCTCAAGCAGTTG 57.174 40.909 0.00 0.00 33.41 3.16
54 55 6.291377 TCTAACAAGAATGTCTCAAGCAGTT 58.709 36.000 0.00 0.00 39.40 3.16
55 56 5.858381 TCTAACAAGAATGTCTCAAGCAGT 58.142 37.500 0.00 0.00 39.40 4.40
56 57 6.791887 TTCTAACAAGAATGTCTCAAGCAG 57.208 37.500 0.00 0.00 39.40 4.24
57 58 6.293626 GCTTTCTAACAAGAATGTCTCAAGCA 60.294 38.462 0.00 0.00 39.40 3.91
58 59 6.082984 GCTTTCTAACAAGAATGTCTCAAGC 58.917 40.000 0.00 0.00 39.40 4.01
59 60 7.194607 TGCTTTCTAACAAGAATGTCTCAAG 57.805 36.000 0.00 0.00 39.40 3.02
60 61 7.587629 CATGCTTTCTAACAAGAATGTCTCAA 58.412 34.615 0.00 0.00 39.40 3.02
61 62 6.348786 GCATGCTTTCTAACAAGAATGTCTCA 60.349 38.462 11.37 0.00 40.73 3.27
62 63 6.026513 GCATGCTTTCTAACAAGAATGTCTC 58.973 40.000 11.37 0.00 40.73 3.36
63 64 5.709164 AGCATGCTTTCTAACAAGAATGTCT 59.291 36.000 16.30 0.00 40.73 3.41
64 65 5.947443 AGCATGCTTTCTAACAAGAATGTC 58.053 37.500 16.30 0.00 40.73 3.06
65 66 5.972107 AGCATGCTTTCTAACAAGAATGT 57.028 34.783 16.30 0.00 40.73 2.71
96 97 9.976511 CGACATCCAACCTATAGTTATCTTTTA 57.023 33.333 0.00 0.00 36.18 1.52
97 98 8.483758 ACGACATCCAACCTATAGTTATCTTTT 58.516 33.333 0.00 0.00 36.18 2.27
98 99 8.019656 ACGACATCCAACCTATAGTTATCTTT 57.980 34.615 0.00 0.00 36.18 2.52
99 100 7.598759 ACGACATCCAACCTATAGTTATCTT 57.401 36.000 0.00 0.00 36.18 2.40
100 101 7.598759 AACGACATCCAACCTATAGTTATCT 57.401 36.000 0.00 0.00 36.18 1.98
101 102 8.658499 AAAACGACATCCAACCTATAGTTATC 57.342 34.615 0.00 0.00 36.18 1.75
124 125 3.056891 GTCAATGCAGGGATTCGGAAAAA 60.057 43.478 0.00 0.00 0.00 1.94
125 126 2.491693 GTCAATGCAGGGATTCGGAAAA 59.508 45.455 0.00 0.00 0.00 2.29
134 136 5.479724 TCATATGTTTTTGTCAATGCAGGGA 59.520 36.000 1.90 0.00 0.00 4.20
139 141 6.034256 GCAGAGTCATATGTTTTTGTCAATGC 59.966 38.462 1.90 0.00 0.00 3.56
144 146 7.978982 AGTATGCAGAGTCATATGTTTTTGTC 58.021 34.615 1.90 0.00 32.24 3.18
147 149 8.340618 ACAAGTATGCAGAGTCATATGTTTTT 57.659 30.769 1.90 0.00 32.24 1.94
177 179 7.226128 TGTTTGCACAAAAATTATGAAGCATGA 59.774 29.630 0.00 0.00 34.36 3.07
178 180 7.353497 TGTTTGCACAAAAATTATGAAGCATG 58.647 30.769 0.00 0.00 34.36 4.06
189 193 9.688592 TTTTCTTCAAAATGTTTGCACAAAAAT 57.311 22.222 0.00 0.00 36.16 1.82
197 201 8.872845 TCTTCTCTTTTTCTTCAAAATGTTTGC 58.127 29.630 0.00 0.00 33.73 3.68
205 209 9.793252 CAATCAAGTCTTCTCTTTTTCTTCAAA 57.207 29.630 0.00 0.00 0.00 2.69
206 210 9.177608 TCAATCAAGTCTTCTCTTTTTCTTCAA 57.822 29.630 0.00 0.00 0.00 2.69
303 314 5.654650 TGTTGGTCAAACCTTTAGTCAATGT 59.345 36.000 0.00 0.00 39.58 2.71
387 398 7.671495 AGATGCCACAAAAATTTTATTGTCC 57.329 32.000 3.34 0.96 37.66 4.02
388 399 8.992073 AGAAGATGCCACAAAAATTTTATTGTC 58.008 29.630 3.34 0.00 37.66 3.18
446 620 6.426025 GTCCCTTCGTATTTAGTGTCAAAGTT 59.574 38.462 0.00 0.00 0.00 2.66
449 623 5.240121 GGTCCCTTCGTATTTAGTGTCAAA 58.760 41.667 0.00 0.00 0.00 2.69
456 630 6.261603 GGTTTATTGGGTCCCTTCGTATTTAG 59.738 42.308 10.00 0.00 0.00 1.85
457 631 6.121590 GGTTTATTGGGTCCCTTCGTATTTA 58.878 40.000 10.00 0.00 0.00 1.40
461 635 2.239402 GGGTTTATTGGGTCCCTTCGTA 59.761 50.000 10.00 0.00 37.18 3.43
482 656 6.659668 TCTTAATATGATACTCCCTCTGTCCG 59.340 42.308 0.00 0.00 0.00 4.79
487 772 8.744652 CGTCAATCTTAATATGATACTCCCTCT 58.255 37.037 0.00 0.00 0.00 3.69
503 788 7.667043 ATTGCTTTTCTACACGTCAATCTTA 57.333 32.000 0.00 0.00 0.00 2.10
505 790 6.204688 TGAATTGCTTTTCTACACGTCAATCT 59.795 34.615 0.00 0.00 0.00 2.40
506 791 6.370593 TGAATTGCTTTTCTACACGTCAATC 58.629 36.000 0.00 0.00 0.00 2.67
507 792 6.312399 TGAATTGCTTTTCTACACGTCAAT 57.688 33.333 0.00 0.00 0.00 2.57
509 794 5.940192 ATGAATTGCTTTTCTACACGTCA 57.060 34.783 0.00 0.00 0.00 4.35
510 795 7.290857 TCTATGAATTGCTTTTCTACACGTC 57.709 36.000 0.00 0.00 0.00 4.34
564 849 9.840427 CGGTTCATATTTCTTTTACAAATGTCT 57.160 29.630 0.00 0.00 0.00 3.41
565 850 9.834628 TCGGTTCATATTTCTTTTACAAATGTC 57.165 29.630 0.00 0.00 0.00 3.06
584 869 8.842358 AGAAATACAGTAGAATTTTCGGTTCA 57.158 30.769 0.68 0.00 32.84 3.18
588 873 8.624701 TCGTAGAAATACAGTAGAATTTTCGG 57.375 34.615 0.68 0.00 32.84 4.30
625 910 9.720769 ACAGAAAGATTTTCGTAGAATCCTAAA 57.279 29.630 0.00 0.00 45.90 1.85
626 911 9.367444 GACAGAAAGATTTTCGTAGAATCCTAA 57.633 33.333 0.00 0.00 45.90 2.69
627 912 7.980099 GGACAGAAAGATTTTCGTAGAATCCTA 59.020 37.037 0.00 0.00 45.90 2.94
628 913 6.819146 GGACAGAAAGATTTTCGTAGAATCCT 59.181 38.462 0.00 0.00 45.90 3.24
629 914 6.594159 TGGACAGAAAGATTTTCGTAGAATCC 59.406 38.462 0.00 0.00 45.90 3.01
630 915 7.596749 TGGACAGAAAGATTTTCGTAGAATC 57.403 36.000 0.00 0.00 45.90 2.52
631 916 7.979444 TTGGACAGAAAGATTTTCGTAGAAT 57.021 32.000 0.00 0.00 45.90 2.40
632 917 7.795482 TTTGGACAGAAAGATTTTCGTAGAA 57.205 32.000 0.00 0.00 45.90 2.10
633 918 7.444183 ACATTTGGACAGAAAGATTTTCGTAGA 59.556 33.333 0.00 0.00 0.00 2.59
634 919 7.584987 ACATTTGGACAGAAAGATTTTCGTAG 58.415 34.615 0.00 0.00 0.00 3.51
635 920 7.504924 ACATTTGGACAGAAAGATTTTCGTA 57.495 32.000 0.00 0.00 0.00 3.43
636 921 6.391227 ACATTTGGACAGAAAGATTTTCGT 57.609 33.333 0.00 0.00 0.00 3.85
637 922 8.970691 AATACATTTGGACAGAAAGATTTTCG 57.029 30.769 0.00 0.00 0.00 3.46
641 926 9.525826 AGAGAAATACATTTGGACAGAAAGATT 57.474 29.630 0.00 0.00 0.00 2.40
657 942 9.679661 TGCAGTGGAATTTTATAGAGAAATACA 57.320 29.630 0.00 0.00 0.00 2.29
661 946 9.077885 ACTTTGCAGTGGAATTTTATAGAGAAA 57.922 29.630 0.00 0.00 0.00 2.52
662 947 8.635765 ACTTTGCAGTGGAATTTTATAGAGAA 57.364 30.769 0.00 0.00 0.00 2.87
663 948 8.514594 CAACTTTGCAGTGGAATTTTATAGAGA 58.485 33.333 0.00 0.00 31.60 3.10
664 949 7.756722 CCAACTTTGCAGTGGAATTTTATAGAG 59.243 37.037 0.00 0.00 31.60 2.43
665 950 7.309744 CCCAACTTTGCAGTGGAATTTTATAGA 60.310 37.037 0.00 0.00 31.60 1.98
666 951 6.813152 CCCAACTTTGCAGTGGAATTTTATAG 59.187 38.462 0.00 0.00 31.60 1.31
667 952 6.696411 CCCAACTTTGCAGTGGAATTTTATA 58.304 36.000 0.00 0.00 31.60 0.98
668 953 5.550290 CCCAACTTTGCAGTGGAATTTTAT 58.450 37.500 0.00 0.00 31.60 1.40
669 954 4.742138 GCCCAACTTTGCAGTGGAATTTTA 60.742 41.667 0.00 0.00 31.60 1.52
670 955 3.807553 CCCAACTTTGCAGTGGAATTTT 58.192 40.909 0.00 0.00 31.60 1.82
671 956 2.485302 GCCCAACTTTGCAGTGGAATTT 60.485 45.455 0.00 0.00 31.60 1.82
672 957 1.070601 GCCCAACTTTGCAGTGGAATT 59.929 47.619 0.00 0.00 31.60 2.17
673 958 0.681175 GCCCAACTTTGCAGTGGAAT 59.319 50.000 0.00 0.00 31.60 3.01
674 959 1.398958 GGCCCAACTTTGCAGTGGAA 61.399 55.000 8.83 0.00 31.60 3.53
675 960 1.832167 GGCCCAACTTTGCAGTGGA 60.832 57.895 8.83 0.00 31.60 4.02
676 961 2.736531 GGCCCAACTTTGCAGTGG 59.263 61.111 0.00 0.00 31.60 4.00
677 962 2.336088 CGGCCCAACTTTGCAGTG 59.664 61.111 0.00 0.00 31.60 3.66
678 963 2.123897 ACGGCCCAACTTTGCAGT 60.124 55.556 0.00 0.00 33.11 4.40
679 964 2.336088 CACGGCCCAACTTTGCAG 59.664 61.111 0.00 0.00 0.00 4.41
680 965 3.910490 GCACGGCCCAACTTTGCA 61.910 61.111 0.00 0.00 33.24 4.08
681 966 3.605664 AGCACGGCCCAACTTTGC 61.606 61.111 0.00 0.00 0.00 3.68
682 967 2.336088 CAGCACGGCCCAACTTTG 59.664 61.111 0.00 0.00 0.00 2.77
683 968 3.605664 GCAGCACGGCCCAACTTT 61.606 61.111 0.00 0.00 0.00 2.66
704 989 2.228582 TCGAATTTCGTTACGAGGTCCA 59.771 45.455 17.61 0.00 41.35 4.02
720 1005 3.961480 TGTCAGATGTTGGACTCGAAT 57.039 42.857 0.00 0.00 35.11 3.34
725 1010 2.880890 GTGCTTTGTCAGATGTTGGACT 59.119 45.455 0.00 0.00 35.11 3.85
734 1019 1.891919 GTGGCCGTGCTTTGTCAGA 60.892 57.895 0.00 0.00 0.00 3.27
760 1045 0.472471 TTTTGCACTTCGGTCCCTCT 59.528 50.000 0.00 0.00 0.00 3.69
1065 1369 1.162181 AACTGTCGGAGTCGTCGTCA 61.162 55.000 0.00 0.00 37.69 4.35
1157 1461 2.507992 CTTCACAGCCGAGCCGAG 60.508 66.667 0.00 0.00 0.00 4.63
1173 1477 4.592192 CGGATCGCATCACGGGCT 62.592 66.667 0.00 0.00 43.89 5.19
1175 1479 3.848347 CTCCGGATCGCATCACGGG 62.848 68.421 3.57 0.00 43.89 5.28
1176 1480 2.355126 CTCCGGATCGCATCACGG 60.355 66.667 3.57 14.10 43.89 4.94
1177 1481 2.355126 CCTCCGGATCGCATCACG 60.355 66.667 3.57 0.00 45.62 4.35
1178 1482 2.029666 CCCTCCGGATCGCATCAC 59.970 66.667 3.57 0.00 0.00 3.06
1179 1483 3.233980 CCCCTCCGGATCGCATCA 61.234 66.667 3.57 0.00 0.00 3.07
1180 1484 2.917751 TCCCCTCCGGATCGCATC 60.918 66.667 3.57 0.00 34.86 3.91
1181 1485 3.234730 GTCCCCTCCGGATCGCAT 61.235 66.667 3.57 0.00 44.66 4.73
1210 1514 2.918248 CCAGATCCGGCATTCCCA 59.082 61.111 0.00 0.00 0.00 4.37
1344 1649 0.882474 TAAAATCCCGCAAACCACCG 59.118 50.000 0.00 0.00 0.00 4.94
1381 1686 3.308035 TCCACCTAAATCCGAGCTCTA 57.692 47.619 12.85 0.00 0.00 2.43
1423 1728 2.033602 GCCGTAACCAACTGCCCT 59.966 61.111 0.00 0.00 32.57 5.19
1520 1825 2.742372 CCGAACTGGTTCCGGCAG 60.742 66.667 0.00 0.25 36.27 4.85
1564 1869 3.092081 GAGCGCATCCACAAACAAC 57.908 52.632 11.47 0.00 0.00 3.32
1594 1908 9.956640 TCAATCTAATTGGCCAAACAAAAATAT 57.043 25.926 24.71 0.00 40.61 1.28
1646 1960 2.723273 TCTAACCAGCTCGTGAGATCA 58.277 47.619 0.00 0.00 40.84 2.92
1776 2090 7.387948 GCACAGATAACCGATGTCCTTATAAAT 59.612 37.037 0.00 0.00 0.00 1.40
1803 2117 6.318648 CCTGCCAGCTATAAAAATTGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
1897 2211 2.295909 GGGACAGCAAACATGCACTAAA 59.704 45.455 3.41 0.00 37.25 1.85
1934 2248 2.391616 TGAGTGGAGTCACATGATGC 57.608 50.000 0.00 0.00 45.91 3.91
2018 2332 9.369904 CTACAGCCAAAATGCATAAAAACTTAT 57.630 29.630 0.00 0.00 0.00 1.73
2042 2358 6.735678 TTCAAGCGATAAACTGAATTGCTA 57.264 33.333 0.00 0.00 42.14 3.49
2083 2399 6.146347 TGTTTTTCTGCAACAAGTAAAACCAC 59.854 34.615 12.74 1.84 42.29 4.16
2126 2442 6.556495 TCATGGGCTAGAAACAGAGATATCTT 59.444 38.462 6.70 0.00 0.00 2.40
2249 2572 0.463833 GTCCCTAAGCCCAACATCCG 60.464 60.000 0.00 0.00 0.00 4.18
2420 2746 5.542251 AGGAGCATAAGAGATAGAACCCTTC 59.458 44.000 0.00 0.00 0.00 3.46
2686 3013 1.882623 GGTCAAAGCACCCAAGAGAAG 59.117 52.381 0.00 0.00 0.00 2.85
2794 3121 5.757320 ACTAGCTCATGCATATGTTCACTTC 59.243 40.000 0.00 0.00 42.74 3.01
2795 3122 5.678583 ACTAGCTCATGCATATGTTCACTT 58.321 37.500 0.00 0.00 42.74 3.16
2865 3192 5.974156 TTTGATCTCCCAGATTGATACCA 57.026 39.130 0.00 0.00 34.53 3.25
2901 3228 7.757624 TGGCTCTTTTTAAAAAGGTATATTGCG 59.242 33.333 30.78 10.63 44.22 4.85
2917 3247 7.447594 AGATCAAAATCACAATGGCTCTTTTT 58.552 30.769 0.00 0.00 34.07 1.94
2964 3294 6.606796 TCAACCTGCAACATAACATATCCAAT 59.393 34.615 0.00 0.00 0.00 3.16
2965 3295 5.948758 TCAACCTGCAACATAACATATCCAA 59.051 36.000 0.00 0.00 0.00 3.53
2966 3296 5.504853 TCAACCTGCAACATAACATATCCA 58.495 37.500 0.00 0.00 0.00 3.41
2967 3297 5.009010 CCTCAACCTGCAACATAACATATCC 59.991 44.000 0.00 0.00 0.00 2.59
2968 3298 5.506317 GCCTCAACCTGCAACATAACATATC 60.506 44.000 0.00 0.00 0.00 1.63
2969 3299 4.339247 GCCTCAACCTGCAACATAACATAT 59.661 41.667 0.00 0.00 0.00 1.78
2970 3300 3.694072 GCCTCAACCTGCAACATAACATA 59.306 43.478 0.00 0.00 0.00 2.29
2971 3301 2.493278 GCCTCAACCTGCAACATAACAT 59.507 45.455 0.00 0.00 0.00 2.71
3278 3608 0.896226 GAGTAAGGAGGTTGCCGTCT 59.104 55.000 0.00 0.00 0.00 4.18
3447 3777 7.546358 TCTGGATTTGCCTGTACATAAAAATG 58.454 34.615 12.08 0.00 36.96 2.32
3459 3789 4.524316 TCACAATTTCTGGATTTGCCTG 57.476 40.909 0.00 0.00 37.63 4.85
3560 3890 5.423704 TCCCGAACACAATTTATACCTGA 57.576 39.130 0.00 0.00 0.00 3.86
3586 3916 8.179509 TGTTATAGTTCTATAGCTTGTCCTCC 57.820 38.462 12.41 0.00 0.00 4.30
3657 3987 8.458843 CCATCAAAAACGTAGAAGGACAAATAT 58.541 33.333 0.00 0.00 0.00 1.28
3669 3999 6.202954 ACTCTTCAGTTCCATCAAAAACGTAG 59.797 38.462 0.00 0.00 0.00 3.51
3672 4005 5.007626 TCACTCTTCAGTTCCATCAAAAACG 59.992 40.000 0.00 0.00 0.00 3.60
3697 4030 8.638629 ACTTAGCTCATATACAGTAAGGTAGG 57.361 38.462 0.00 0.00 0.00 3.18
4028 4385 2.877708 GCTGCTAGTCCCTCAAGCTTTT 60.878 50.000 0.00 0.00 37.16 2.27
4029 4386 1.339535 GCTGCTAGTCCCTCAAGCTTT 60.340 52.381 0.00 0.00 37.16 3.51
4221 4578 3.062639 CACTGACAATGCGGCTTACTAAG 59.937 47.826 0.00 0.00 0.00 2.18
4332 4689 0.591170 GCTTGCTAACAGCCAAACGA 59.409 50.000 0.00 0.00 41.51 3.85
4483 4843 7.148306 CGTATTACCTACCAAATTGCAACTTCT 60.148 37.037 0.00 0.00 0.00 2.85
4660 5020 6.655062 TGAGCTCAAAAATAACTGTAACACG 58.345 36.000 15.67 0.00 0.00 4.49
4807 5167 7.230108 ACAATAGGCAAATCAAGATATGGACAG 59.770 37.037 0.00 0.00 0.00 3.51
5540 6176 6.216868 ACCCTAATAACATGGGACTAACAAGT 59.783 38.462 4.11 0.00 43.47 3.16
5564 6200 2.880890 ACAATCAGTTCACAGGAAGCAC 59.119 45.455 0.00 0.00 32.62 4.40
5613 6249 8.206867 TCTAGCTATAGATGTTGAAAATGTGCT 58.793 33.333 3.21 0.00 32.93 4.40
5640 6276 4.336993 TCATGACGGTGCAACTTTAAAAGT 59.663 37.500 0.00 0.00 45.46 2.66
5641 6277 4.854399 TCATGACGGTGCAACTTTAAAAG 58.146 39.130 0.00 0.00 36.74 2.27
5642 6278 4.902443 TCATGACGGTGCAACTTTAAAA 57.098 36.364 0.00 0.00 36.74 1.52
5644 6280 4.902443 TTTCATGACGGTGCAACTTTAA 57.098 36.364 0.00 0.00 36.74 1.52
5645 6281 5.446143 AATTTCATGACGGTGCAACTTTA 57.554 34.783 0.00 0.00 36.74 1.85
5681 6317 7.148018 GGATTTGCTGGAGAAATGATGTTCTAA 60.148 37.037 0.00 0.00 37.98 2.10
5731 6367 3.437395 GTGTGTTGTGGTACAAAGTGACA 59.563 43.478 0.00 0.00 44.16 3.58
5794 6430 7.417612 GGTAATCAAACATATTGCTCGATTGT 58.582 34.615 0.00 0.00 0.00 2.71
5845 6489 5.836898 TGAGTAAAAGTCCCTACTCTGAACA 59.163 40.000 9.85 0.00 42.96 3.18
5912 6556 4.875578 ACAGGACTATCCAGGTACAGTA 57.124 45.455 0.00 0.00 39.61 2.74
5956 6600 7.769272 TTTCAAAGTTTGGAAATTGCAGTAG 57.231 32.000 15.47 0.00 0.00 2.57
5957 6601 8.553459 TTTTTCAAAGTTTGGAAATTGCAGTA 57.447 26.923 20.26 3.69 37.93 2.74
5959 6603 8.330302 CATTTTTCAAAGTTTGGAAATTGCAG 57.670 30.769 22.21 10.09 37.93 4.41
5962 6606 7.220491 GTGGCATTTTTCAAAGTTTGGAAATTG 59.780 33.333 26.17 26.17 37.93 2.32
5964 6608 6.602803 AGTGGCATTTTTCAAAGTTTGGAAAT 59.397 30.769 20.26 18.72 37.93 2.17
5965 6609 5.942826 AGTGGCATTTTTCAAAGTTTGGAAA 59.057 32.000 16.59 16.59 36.38 3.13
5966 6610 5.353678 CAGTGGCATTTTTCAAAGTTTGGAA 59.646 36.000 15.47 10.54 0.00 3.53
5967 6611 4.874966 CAGTGGCATTTTTCAAAGTTTGGA 59.125 37.500 15.47 3.83 0.00 3.53
5969 6613 4.590226 GCAGTGGCATTTTTCAAAGTTTG 58.410 39.130 9.44 9.44 40.72 2.93
5970 6614 4.880886 GCAGTGGCATTTTTCAAAGTTT 57.119 36.364 0.00 0.00 40.72 2.66
5996 6955 7.748241 GCAGTGACATTTTTAAAAGTTTGCAAA 59.252 29.630 8.05 8.05 30.04 3.68
5997 6956 7.095060 TGCAGTGACATTTTTAAAAGTTTGCAA 60.095 29.630 16.57 0.00 33.38 4.08
5999 6958 6.770076 TGCAGTGACATTTTTAAAAGTTTGC 58.230 32.000 0.14 8.75 0.00 3.68
6000 6959 8.110002 GTCTGCAGTGACATTTTTAAAAGTTTG 58.890 33.333 14.67 3.88 36.97 2.93
6001 6960 8.034804 AGTCTGCAGTGACATTTTTAAAAGTTT 58.965 29.630 14.67 0.00 39.27 2.66
6002 6961 7.547227 AGTCTGCAGTGACATTTTTAAAAGTT 58.453 30.769 14.67 0.00 39.27 2.66
6003 6962 7.100458 AGTCTGCAGTGACATTTTTAAAAGT 57.900 32.000 14.67 0.00 39.27 2.66
6004 6963 7.992180 AAGTCTGCAGTGACATTTTTAAAAG 57.008 32.000 14.67 0.00 39.27 2.27
6005 6964 8.031864 TCAAAGTCTGCAGTGACATTTTTAAAA 58.968 29.630 14.67 0.00 39.27 1.52
6007 6966 7.094508 TCAAAGTCTGCAGTGACATTTTTAA 57.905 32.000 14.67 0.00 39.27 1.52
6008 6967 6.691754 TCAAAGTCTGCAGTGACATTTTTA 57.308 33.333 14.67 0.00 39.27 1.52
6009 6968 5.581126 TCAAAGTCTGCAGTGACATTTTT 57.419 34.783 14.67 0.20 39.27 1.94
6010 6969 5.581126 TTCAAAGTCTGCAGTGACATTTT 57.419 34.783 14.67 0.60 39.27 1.82
6012 6971 5.581126 TTTTCAAAGTCTGCAGTGACATT 57.419 34.783 14.67 2.01 39.27 2.71
6015 6974 4.207841 GCATTTTTCAAAGTCTGCAGTGAC 59.792 41.667 14.67 5.73 37.23 3.67
6016 6975 4.362279 GCATTTTTCAAAGTCTGCAGTGA 58.638 39.130 14.67 7.16 0.00 3.41
6017 6976 3.492011 GGCATTTTTCAAAGTCTGCAGTG 59.508 43.478 14.67 4.51 0.00 3.66
6018 6977 3.132646 TGGCATTTTTCAAAGTCTGCAGT 59.867 39.130 14.67 0.00 0.00 4.40
6019 6978 3.719924 TGGCATTTTTCAAAGTCTGCAG 58.280 40.909 7.63 7.63 0.00 4.41
6020 6979 3.815856 TGGCATTTTTCAAAGTCTGCA 57.184 38.095 0.00 0.00 0.00 4.41
6021 6980 4.083696 CCATTGGCATTTTTCAAAGTCTGC 60.084 41.667 0.00 0.00 0.00 4.26
6022 6981 5.299148 TCCATTGGCATTTTTCAAAGTCTG 58.701 37.500 0.00 0.00 0.00 3.51
6023 6982 5.549742 TCCATTGGCATTTTTCAAAGTCT 57.450 34.783 0.00 0.00 0.00 3.24
6024 6983 6.616774 TTTCCATTGGCATTTTTCAAAGTC 57.383 33.333 0.00 0.00 0.00 3.01
6025 6984 6.771749 TCATTTCCATTGGCATTTTTCAAAGT 59.228 30.769 0.00 0.00 0.00 2.66
6026 6985 7.079475 GTCATTTCCATTGGCATTTTTCAAAG 58.921 34.615 0.00 0.00 0.00 2.77
6027 6986 6.544931 TGTCATTTCCATTGGCATTTTTCAAA 59.455 30.769 0.00 0.00 0.00 2.69
6029 6988 5.618236 TGTCATTTCCATTGGCATTTTTCA 58.382 33.333 0.00 0.00 0.00 2.69
6030 6989 6.746745 ATGTCATTTCCATTGGCATTTTTC 57.253 33.333 0.00 0.00 36.00 2.29
6035 6994 6.239396 TGAAAAATGTCATTTCCATTGGCAT 58.761 32.000 11.19 0.00 40.99 4.40
6037 6996 6.557291 TTGAAAAATGTCATTTCCATTGGC 57.443 33.333 11.19 0.00 36.23 4.52
6038 6997 8.156994 ACTTTGAAAAATGTCATTTCCATTGG 57.843 30.769 11.19 0.00 36.23 3.16
6183 8808 7.422399 TCAAAGAACAACAAAATAGTGCCTAC 58.578 34.615 0.00 0.00 0.00 3.18
6556 9207 2.821969 GGGTTCAGTTGTGATGATGCTT 59.178 45.455 0.00 0.00 30.85 3.91
6564 9215 5.888724 TGTAAATTCTTGGGTTCAGTTGTGA 59.111 36.000 0.00 0.00 0.00 3.58
6611 9262 9.632638 ACAGGAACAGCAACATAAATATAGAAT 57.367 29.630 0.00 0.00 0.00 2.40
6617 9268 7.094377 GGAAGAACAGGAACAGCAACATAAATA 60.094 37.037 0.00 0.00 0.00 1.40
6810 9596 6.855763 TTGGCAACCATAGAAAAAGATCAT 57.144 33.333 0.00 0.00 31.53 2.45
6849 9635 0.474854 TAGAGTGGGCAAAGGGGTGA 60.475 55.000 0.00 0.00 0.00 4.02
6893 9679 0.810648 TCGTGCTTGCCCATGATTTC 59.189 50.000 0.00 0.00 0.00 2.17
6956 9776 1.950828 TTTCGGGCGTTTAGTTCACA 58.049 45.000 0.00 0.00 0.00 3.58
6968 9788 3.796717 CAGTTTTTCAGAAGTTTTCGGGC 59.203 43.478 0.00 0.00 34.02 6.13
7014 9835 1.656441 CTCAGTGCCCTGCAAACAC 59.344 57.895 5.50 5.50 41.47 3.32
7119 9940 3.699134 CTTGGGCCCGCTTAGTCCC 62.699 68.421 19.37 0.00 39.22 4.46
7146 9967 0.328258 ACCTTACCGCCAGCTTCATT 59.672 50.000 0.00 0.00 0.00 2.57
7245 10066 2.165319 ACCGGCTCTACACAAGTTTC 57.835 50.000 0.00 0.00 0.00 2.78
7250 10071 4.708421 AGACTATTTACCGGCTCTACACAA 59.292 41.667 0.00 0.00 0.00 3.33
7403 10227 1.135689 GCTGAACGCAATGGGTACAAG 60.136 52.381 2.68 3.28 38.92 3.16
7404 10228 0.878416 GCTGAACGCAATGGGTACAA 59.122 50.000 2.68 0.00 38.92 2.41
7406 10230 1.800681 GGCTGAACGCAATGGGTAC 59.199 57.895 2.68 0.00 41.67 3.34
7407 10231 1.743623 CGGCTGAACGCAATGGGTA 60.744 57.895 2.68 0.00 41.67 3.69
7408 10232 3.055719 CGGCTGAACGCAATGGGT 61.056 61.111 0.00 0.00 41.67 4.51
7411 10235 0.725784 GTGAACGGCTGAACGCAATG 60.726 55.000 0.00 0.00 41.67 2.82
7412 10236 0.884704 AGTGAACGGCTGAACGCAAT 60.885 50.000 0.00 0.00 41.67 3.56
7504 10328 5.647658 CAGATTAGCCCACACATTTTACAGA 59.352 40.000 0.00 0.00 0.00 3.41
7796 13581 7.650504 AGATGTGTGTGAAATTTCATGACAAAG 59.349 33.333 25.70 0.00 39.73 2.77
7799 13584 6.638096 AGATGTGTGTGAAATTTCATGACA 57.362 33.333 23.05 22.77 39.73 3.58
7903 13706 0.908910 TTTGCTCTCGGGCTCCATAA 59.091 50.000 0.00 0.00 0.00 1.90
7978 13782 3.318017 CGGTTAGGATATCTGGCTTTCG 58.682 50.000 2.05 0.00 0.00 3.46
8037 13841 8.034313 TGCTCCTAAATTTACCAGATATCACT 57.966 34.615 5.32 0.00 0.00 3.41
8038 13842 8.560374 GTTGCTCCTAAATTTACCAGATATCAC 58.440 37.037 5.32 0.00 0.00 3.06
8041 13845 8.052748 TGTGTTGCTCCTAAATTTACCAGATAT 58.947 33.333 0.00 0.00 0.00 1.63
8043 13847 6.245408 TGTGTTGCTCCTAAATTTACCAGAT 58.755 36.000 0.00 0.00 0.00 2.90
8045 13849 5.619981 GCTGTGTTGCTCCTAAATTTACCAG 60.620 44.000 0.00 0.00 0.00 4.00
8047 13851 4.380550 GGCTGTGTTGCTCCTAAATTTACC 60.381 45.833 0.00 0.00 0.00 2.85
8048 13852 4.217550 TGGCTGTGTTGCTCCTAAATTTAC 59.782 41.667 0.00 0.00 0.00 2.01
8145 13965 2.116556 TTTTGGAGGCGGTTCCCC 59.883 61.111 0.00 0.00 36.35 4.81
8159 13979 4.174305 CCGTGGGCAAGGAGTTTT 57.826 55.556 0.00 0.00 31.21 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.