Multiple sequence alignment - TraesCS4D01G234700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G234700 chr4D 100.000 7780 0 0 1 7780 394957997 394965776 0.000000e+00 14368.0
1 TraesCS4D01G234700 chr4A 94.359 6861 270 62 274 7081 76617964 76624760 0.000000e+00 10418.0
2 TraesCS4D01G234700 chr4A 94.502 291 14 1 7126 7414 76624766 76625056 1.540000e-121 448.0
3 TraesCS4D01G234700 chr4A 88.770 374 15 2 7407 7780 76625096 76625442 4.310000e-117 433.0
4 TraesCS4D01G234700 chr4A 90.045 221 12 3 1 212 90436879 90436660 2.140000e-70 278.0
5 TraesCS4D01G234700 chr4A 76.856 229 44 8 5018 5243 496339235 496339013 3.810000e-23 121.0
6 TraesCS4D01G234700 chr4B 94.560 5276 198 33 1850 7082 486091689 486096918 0.000000e+00 8070.0
7 TraesCS4D01G234700 chr4B 85.533 1106 60 31 232 1300 486081657 486082699 0.000000e+00 1064.0
8 TraesCS4D01G234700 chr4B 95.282 657 28 2 7126 7780 486096923 486097578 0.000000e+00 1038.0
9 TraesCS4D01G234700 chr4B 90.503 537 36 6 1322 1850 486082757 486083286 0.000000e+00 695.0
10 TraesCS4D01G234700 chr7B 77.367 4056 716 126 2913 6898 731018486 731014563 0.000000e+00 2218.0
11 TraesCS4D01G234700 chr7D 77.815 3624 607 120 2913 6452 629187319 629190829 0.000000e+00 2056.0
12 TraesCS4D01G234700 chr7D 88.073 218 15 8 1 209 494672208 494672423 1.680000e-61 248.0
13 TraesCS4D01G234700 chr7D 74.342 304 57 15 4244 4538 635840737 635841028 8.250000e-20 110.0
14 TraesCS4D01G234700 chr7A 81.616 359 54 7 2913 3268 725124301 725123952 3.550000e-73 287.0
15 TraesCS4D01G234700 chr7A 88.679 212 17 5 1 211 547144258 547144053 1.300000e-62 252.0
16 TraesCS4D01G234700 chr7A 89.394 198 14 7 19 214 177271120 177270928 7.800000e-60 243.0
17 TraesCS4D01G234700 chr7A 77.826 230 40 10 5018 5243 711675494 711675272 1.760000e-26 132.0
18 TraesCS4D01G234700 chr7A 76.856 229 44 8 5018 5243 37073974 37073752 3.810000e-23 121.0
19 TraesCS4D01G234700 chr5D 89.686 223 13 3 1 214 520917701 520917480 7.690000e-70 276.0
20 TraesCS4D01G234700 chr5D 89.151 212 19 4 1 211 104150797 104151005 2.150000e-65 261.0
21 TraesCS4D01G234700 chr1D 90.000 220 11 4 1 211 332943967 332944184 2.770000e-69 274.0
22 TraesCS4D01G234700 chr1D 78.689 183 32 6 5018 5198 449834528 449834351 1.770000e-21 115.0
23 TraesCS4D01G234700 chr3A 86.111 216 20 7 1 207 475255013 475254799 2.830000e-54 224.0
24 TraesCS4D01G234700 chr3A 91.045 67 5 1 2633 2698 215956006 215955940 1.080000e-13 89.8
25 TraesCS4D01G234700 chr3D 87.817 197 15 6 19 209 590399456 590399263 1.020000e-53 222.0
26 TraesCS4D01G234700 chr5A 87.500 192 18 6 19 209 600473635 600473821 4.730000e-52 217.0
27 TraesCS4D01G234700 chr5A 94.667 75 1 2 2625 2699 605241848 605241777 6.380000e-21 113.0
28 TraesCS4D01G234700 chr1A 84.793 217 20 8 1 211 522996694 522996903 1.020000e-48 206.0
29 TraesCS4D01G234700 chr6A 77.489 231 45 6 5015 5243 199077400 199077625 1.760000e-26 132.0
30 TraesCS4D01G234700 chr6A 77.193 228 45 6 5018 5243 310232093 310231871 8.200000e-25 126.0
31 TraesCS4D01G234700 chr6D 94.030 67 1 1 2632 2698 410152966 410152903 1.790000e-16 99.0
32 TraesCS4D01G234700 chr5B 90.909 66 5 1 2633 2698 564197179 564197115 3.870000e-13 87.9
33 TraesCS4D01G234700 chr5B 89.394 66 6 1 2633 2698 564237212 564237148 1.800000e-11 82.4
34 TraesCS4D01G234700 chr2A 97.959 49 1 0 2657 2705 379151757 379151709 1.390000e-12 86.1
35 TraesCS4D01G234700 chr2D 85.526 76 7 2 2633 2704 593688633 593688558 8.370000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G234700 chr4D 394957997 394965776 7779 False 14368.000000 14368 100.000000 1 7780 1 chr4D.!!$F1 7779
1 TraesCS4D01G234700 chr4A 76617964 76625442 7478 False 3766.333333 10418 92.543667 274 7780 3 chr4A.!!$F1 7506
2 TraesCS4D01G234700 chr4B 486091689 486097578 5889 False 4554.000000 8070 94.921000 1850 7780 2 chr4B.!!$F2 5930
3 TraesCS4D01G234700 chr4B 486081657 486083286 1629 False 879.500000 1064 88.018000 232 1850 2 chr4B.!!$F1 1618
4 TraesCS4D01G234700 chr7B 731014563 731018486 3923 True 2218.000000 2218 77.367000 2913 6898 1 chr7B.!!$R1 3985
5 TraesCS4D01G234700 chr7D 629187319 629190829 3510 False 2056.000000 2056 77.815000 2913 6452 1 chr7D.!!$F2 3539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 482 0.175989 GAACGTCCTCCTGATCCACC 59.824 60.000 0.00 0.00 0.00 4.61 F
493 508 0.320858 TCTTTTCCCGTACGCATGCA 60.321 50.000 19.57 0.00 0.00 3.96 F
743 789 1.219935 GGACGGCCGAAACCATAGT 59.780 57.895 35.90 5.18 0.00 2.12 F
1223 1305 2.490685 GAAGGAGCCGGAGTCGTC 59.509 66.667 5.05 0.00 33.95 4.20 F
2703 2840 3.256704 TGGGACAGAGGGAGTATGTTTT 58.743 45.455 0.00 0.00 27.90 2.43 F
3596 3784 1.560611 TGTGGGATCATCTGATGCACA 59.439 47.619 18.60 18.60 43.56 4.57 F
5028 5235 0.113385 TCCCAAAATTCCCGCTTCCA 59.887 50.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 1631 2.065993 GCTACGTGCTGACAAGAGAA 57.934 50.000 0.00 0.00 38.95 2.87 R
1649 1774 3.072184 ACAACAAGGTGAGATCAAGAGCT 59.928 43.478 0.00 0.00 0.00 4.09 R
2562 2699 1.611491 ACCCGTCATGCAAACGAAATT 59.389 42.857 22.21 4.76 42.62 1.82 R
2909 3047 2.575735 TGGGTGAGATGACCTGCAAATA 59.424 45.455 0.00 0.00 36.14 1.40 R
4167 4357 1.002134 CCACAGGCCATCGTTTCCT 60.002 57.895 5.01 0.00 0.00 3.36 R
5558 5782 1.355381 ACATCATTGAGCCACCCAGAA 59.645 47.619 0.00 0.00 0.00 3.02 R
6918 7166 0.243636 CCACCAGTTTTGAATCGGGC 59.756 55.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.296799 TGTTATTTGACAATCTGTTTGAATGC 57.703 30.769 5.52 0.00 38.76 3.56
40 41 7.924947 TGTTATTTGACAATCTGTTTGAATGCA 59.075 29.630 5.52 0.00 38.76 3.96
41 42 8.763356 GTTATTTGACAATCTGTTTGAATGCAA 58.237 29.630 5.52 0.00 38.76 4.08
42 43 7.789273 ATTTGACAATCTGTTTGAATGCAAA 57.211 28.000 0.00 0.00 41.47 3.68
43 44 7.789273 TTTGACAATCTGTTTGAATGCAAAT 57.211 28.000 1.18 0.00 45.01 2.32
44 45 7.410800 TTGACAATCTGTTTGAATGCAAATC 57.589 32.000 1.18 0.00 45.01 2.17
45 46 6.514063 TGACAATCTGTTTGAATGCAAATCA 58.486 32.000 1.18 2.11 45.01 2.57
46 47 6.985059 TGACAATCTGTTTGAATGCAAATCAA 59.015 30.769 12.72 12.72 45.01 2.57
47 48 7.658167 TGACAATCTGTTTGAATGCAAATCAAT 59.342 29.630 16.26 2.56 45.01 2.57
48 49 7.802738 ACAATCTGTTTGAATGCAAATCAATG 58.197 30.769 16.26 13.10 45.01 2.82
49 50 7.442969 ACAATCTGTTTGAATGCAAATCAATGT 59.557 29.630 16.26 13.59 45.01 2.71
50 51 8.927721 CAATCTGTTTGAATGCAAATCAATGTA 58.072 29.630 16.26 7.53 45.01 2.29
51 52 9.491675 AATCTGTTTGAATGCAAATCAATGTAA 57.508 25.926 16.26 2.44 45.01 2.41
52 53 8.883954 TCTGTTTGAATGCAAATCAATGTAAA 57.116 26.923 16.26 2.14 45.01 2.01
53 54 9.491675 TCTGTTTGAATGCAAATCAATGTAAAT 57.508 25.926 16.26 0.00 45.01 1.40
61 62 8.746922 ATGCAAATCAATGTAAATATTAGGCG 57.253 30.769 0.00 0.00 0.00 5.52
62 63 7.144661 TGCAAATCAATGTAAATATTAGGCGG 58.855 34.615 0.00 0.00 0.00 6.13
63 64 6.089417 GCAAATCAATGTAAATATTAGGCGGC 59.911 38.462 0.00 0.00 0.00 6.53
64 65 5.897377 ATCAATGTAAATATTAGGCGGCC 57.103 39.130 12.11 12.11 0.00 6.13
65 66 4.720046 TCAATGTAAATATTAGGCGGCCA 58.280 39.130 23.09 0.60 0.00 5.36
66 67 4.517453 TCAATGTAAATATTAGGCGGCCAC 59.483 41.667 23.09 8.36 0.00 5.01
67 68 2.485903 TGTAAATATTAGGCGGCCACG 58.514 47.619 23.09 0.00 44.63 4.94
78 79 2.516930 GGCCACGCCTGCACATAT 60.517 61.111 0.00 0.00 46.69 1.78
79 80 2.717485 GCCACGCCTGCACATATG 59.283 61.111 0.00 0.00 0.00 1.78
80 81 2.837883 GCCACGCCTGCACATATGG 61.838 63.158 7.80 0.00 0.00 2.74
81 82 2.188829 CCACGCCTGCACATATGGG 61.189 63.158 7.80 3.61 0.00 4.00
82 83 1.451927 CACGCCTGCACATATGGGT 60.452 57.895 6.86 0.00 0.00 4.51
83 84 1.153168 ACGCCTGCACATATGGGTC 60.153 57.895 6.86 0.00 0.00 4.46
84 85 2.246739 CGCCTGCACATATGGGTCG 61.247 63.158 6.86 2.08 0.00 4.79
85 86 1.893808 GCCTGCACATATGGGTCGG 60.894 63.158 6.86 8.44 0.00 4.79
86 87 1.893808 CCTGCACATATGGGTCGGC 60.894 63.158 6.86 3.06 0.00 5.54
87 88 2.203001 TGCACATATGGGTCGGCG 60.203 61.111 6.86 0.00 0.00 6.46
88 89 3.649986 GCACATATGGGTCGGCGC 61.650 66.667 6.86 0.00 0.00 6.53
89 90 3.337889 CACATATGGGTCGGCGCG 61.338 66.667 7.80 0.00 0.00 6.86
90 91 3.845259 ACATATGGGTCGGCGCGT 61.845 61.111 8.43 3.65 0.00 6.01
91 92 2.587753 CATATGGGTCGGCGCGTT 60.588 61.111 8.43 0.00 0.00 4.84
92 93 2.587753 ATATGGGTCGGCGCGTTG 60.588 61.111 8.43 0.00 0.00 4.10
93 94 4.823419 TATGGGTCGGCGCGTTGG 62.823 66.667 8.43 0.00 0.00 3.77
112 113 3.055719 CGTGCTGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
113 114 2.877691 GTGCTGCCGACCCAAATC 59.122 61.111 0.00 0.00 0.00 2.17
114 115 1.675641 GTGCTGCCGACCCAAATCT 60.676 57.895 0.00 0.00 0.00 2.40
115 116 0.392461 GTGCTGCCGACCCAAATCTA 60.392 55.000 0.00 0.00 0.00 1.98
116 117 0.326595 TGCTGCCGACCCAAATCTAA 59.673 50.000 0.00 0.00 0.00 2.10
117 118 1.271652 TGCTGCCGACCCAAATCTAAA 60.272 47.619 0.00 0.00 0.00 1.85
118 119 1.401905 GCTGCCGACCCAAATCTAAAG 59.598 52.381 0.00 0.00 0.00 1.85
119 120 2.939640 GCTGCCGACCCAAATCTAAAGA 60.940 50.000 0.00 0.00 0.00 2.52
120 121 2.939103 CTGCCGACCCAAATCTAAAGAG 59.061 50.000 0.00 0.00 0.00 2.85
121 122 2.289565 GCCGACCCAAATCTAAAGAGG 58.710 52.381 0.00 0.00 0.00 3.69
122 123 2.919228 CCGACCCAAATCTAAAGAGGG 58.081 52.381 0.00 0.00 45.20 4.30
123 124 2.289565 CGACCCAAATCTAAAGAGGGC 58.710 52.381 0.00 0.00 43.47 5.19
124 125 2.289565 GACCCAAATCTAAAGAGGGCG 58.710 52.381 0.00 0.00 43.47 6.13
125 126 1.064685 ACCCAAATCTAAAGAGGGCGG 60.065 52.381 0.00 0.00 43.47 6.13
126 127 1.211949 CCCAAATCTAAAGAGGGCGGA 59.788 52.381 0.00 0.00 31.81 5.54
127 128 2.289565 CCAAATCTAAAGAGGGCGGAC 58.710 52.381 0.00 0.00 0.00 4.79
128 129 1.933853 CAAATCTAAAGAGGGCGGACG 59.066 52.381 0.00 0.00 0.00 4.79
129 130 0.179081 AATCTAAAGAGGGCGGACGC 60.179 55.000 8.39 8.39 41.06 5.19
130 131 1.327690 ATCTAAAGAGGGCGGACGCA 61.328 55.000 18.95 0.00 44.11 5.24
131 132 1.079405 CTAAAGAGGGCGGACGCAA 60.079 57.895 18.95 0.00 44.11 4.85
132 133 0.672401 CTAAAGAGGGCGGACGCAAA 60.672 55.000 18.95 0.00 44.11 3.68
133 134 0.672401 TAAAGAGGGCGGACGCAAAG 60.672 55.000 18.95 0.00 44.11 2.77
134 135 2.676163 AAAGAGGGCGGACGCAAAGT 62.676 55.000 18.95 0.00 44.11 2.66
135 136 3.423154 GAGGGCGGACGCAAAGTG 61.423 66.667 18.95 0.00 44.11 3.16
161 162 2.563471 CGACCCAAAACGGACAAAAA 57.437 45.000 0.00 0.00 36.56 1.94
162 163 2.456010 CGACCCAAAACGGACAAAAAG 58.544 47.619 0.00 0.00 36.56 2.27
163 164 2.198406 GACCCAAAACGGACAAAAAGC 58.802 47.619 0.00 0.00 36.56 3.51
164 165 1.204792 CCCAAAACGGACAAAAAGCG 58.795 50.000 0.00 0.00 36.56 4.68
165 166 1.202313 CCCAAAACGGACAAAAAGCGA 60.202 47.619 0.00 0.00 36.56 4.93
166 167 2.531206 CCAAAACGGACAAAAAGCGAA 58.469 42.857 0.00 0.00 36.56 4.70
167 168 2.280445 CCAAAACGGACAAAAAGCGAAC 59.720 45.455 0.00 0.00 36.56 3.95
168 169 1.817609 AAACGGACAAAAAGCGAACG 58.182 45.000 0.00 0.00 0.00 3.95
169 170 1.008329 AACGGACAAAAAGCGAACGA 58.992 45.000 0.00 0.00 0.00 3.85
170 171 1.008329 ACGGACAAAAAGCGAACGAA 58.992 45.000 0.00 0.00 0.00 3.85
171 172 1.397692 ACGGACAAAAAGCGAACGAAA 59.602 42.857 0.00 0.00 0.00 3.46
172 173 2.032426 ACGGACAAAAAGCGAACGAAAT 59.968 40.909 0.00 0.00 0.00 2.17
173 174 2.650297 CGGACAAAAAGCGAACGAAATC 59.350 45.455 0.00 0.00 0.00 2.17
174 175 2.650297 GGACAAAAAGCGAACGAAATCG 59.350 45.455 0.48 0.48 45.41 3.34
180 181 2.693285 CGAACGAAATCGCCGTCC 59.307 61.111 2.15 0.00 44.43 4.79
181 182 2.693285 GAACGAAATCGCCGTCCG 59.307 61.111 2.15 0.00 44.43 4.79
182 183 2.048877 AACGAAATCGCCGTCCGT 60.049 55.556 2.15 0.00 44.43 4.69
183 184 1.620413 GAACGAAATCGCCGTCCGTT 61.620 55.000 2.15 0.00 44.63 4.44
184 185 1.223417 AACGAAATCGCCGTCCGTTT 61.223 50.000 2.15 0.00 44.43 3.60
185 186 1.225637 CGAAATCGCCGTCCGTTTG 60.226 57.895 0.00 0.00 38.35 2.93
186 187 1.133869 GAAATCGCCGTCCGTTTGG 59.866 57.895 0.00 0.00 38.35 3.28
187 188 2.248274 GAAATCGCCGTCCGTTTGGG 62.248 60.000 0.00 0.00 38.35 4.12
188 189 3.540367 AATCGCCGTCCGTTTGGGT 62.540 57.895 0.00 0.00 38.35 4.51
189 190 3.945304 ATCGCCGTCCGTTTGGGTC 62.945 63.158 0.00 0.00 38.35 4.46
203 204 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
204 205 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
207 208 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
208 209 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
209 210 1.295423 GCCCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
210 211 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10
211 212 1.679032 GCCCGTTGGAGTTGCTCTAAT 60.679 52.381 0.00 0.00 33.81 1.73
212 213 2.419574 GCCCGTTGGAGTTGCTCTAATA 60.420 50.000 0.00 0.00 33.81 0.98
213 214 3.458189 CCCGTTGGAGTTGCTCTAATAG 58.542 50.000 0.00 0.00 33.81 1.73
214 215 3.132289 CCCGTTGGAGTTGCTCTAATAGA 59.868 47.826 0.00 0.00 33.81 1.98
215 216 4.363999 CCGTTGGAGTTGCTCTAATAGAG 58.636 47.826 12.74 12.74 45.04 2.43
216 217 4.098044 CCGTTGGAGTTGCTCTAATAGAGA 59.902 45.833 20.58 3.73 45.07 3.10
217 218 5.038033 CGTTGGAGTTGCTCTAATAGAGAC 58.962 45.833 20.58 10.67 45.07 3.36
218 219 5.353111 GTTGGAGTTGCTCTAATAGAGACC 58.647 45.833 20.58 13.69 45.07 3.85
219 220 4.610333 TGGAGTTGCTCTAATAGAGACCA 58.390 43.478 20.58 15.66 45.07 4.02
220 221 4.646945 TGGAGTTGCTCTAATAGAGACCAG 59.353 45.833 20.58 0.00 45.07 4.00
221 222 4.647399 GGAGTTGCTCTAATAGAGACCAGT 59.353 45.833 20.58 6.22 45.07 4.00
222 223 5.828859 GGAGTTGCTCTAATAGAGACCAGTA 59.171 44.000 20.58 0.00 45.07 2.74
223 224 6.321690 GGAGTTGCTCTAATAGAGACCAGTAA 59.678 42.308 20.58 0.00 45.07 2.24
224 225 7.341445 AGTTGCTCTAATAGAGACCAGTAAG 57.659 40.000 20.58 0.00 45.07 2.34
225 226 6.322712 AGTTGCTCTAATAGAGACCAGTAAGG 59.677 42.308 20.58 0.00 45.07 2.69
226 227 4.585162 TGCTCTAATAGAGACCAGTAAGGC 59.415 45.833 20.58 3.02 45.07 4.35
227 228 4.830600 GCTCTAATAGAGACCAGTAAGGCT 59.169 45.833 20.58 0.00 45.07 4.58
228 229 6.005198 GCTCTAATAGAGACCAGTAAGGCTA 58.995 44.000 20.58 0.00 45.07 3.93
229 230 6.490721 GCTCTAATAGAGACCAGTAAGGCTAA 59.509 42.308 20.58 0.00 45.07 3.09
230 231 7.522562 GCTCTAATAGAGACCAGTAAGGCTAAC 60.523 44.444 20.58 0.00 45.07 2.34
231 232 7.351952 TCTAATAGAGACCAGTAAGGCTAACA 58.648 38.462 0.00 0.00 43.14 2.41
232 233 5.855740 ATAGAGACCAGTAAGGCTAACAC 57.144 43.478 0.00 0.00 43.14 3.32
233 234 3.507411 AGAGACCAGTAAGGCTAACACA 58.493 45.455 0.00 0.00 43.14 3.72
234 235 3.258622 AGAGACCAGTAAGGCTAACACAC 59.741 47.826 0.00 0.00 43.14 3.82
248 249 2.034879 CACACTAACGGCTGCCCAG 61.035 63.158 14.12 10.37 0.00 4.45
275 276 5.311265 TCAGATCCTGCATTCCATAATCAC 58.689 41.667 0.00 0.00 0.00 3.06
320 330 3.920144 CGGCAACAAACAAACCGTA 57.080 47.368 0.00 0.00 39.05 4.02
352 363 3.357079 GGGACACAAGCGGCACAG 61.357 66.667 1.45 0.00 0.00 3.66
370 381 2.293399 ACAGGAGAAAATTTCGGTGCAC 59.707 45.455 8.80 8.80 34.02 4.57
373 384 0.665835 AGAAAATTTCGGTGCACGCA 59.334 45.000 11.45 0.00 43.86 5.24
467 482 0.175989 GAACGTCCTCCTGATCCACC 59.824 60.000 0.00 0.00 0.00 4.61
488 503 1.730612 CTTTCCTCTTTTCCCGTACGC 59.269 52.381 10.49 0.00 0.00 4.42
491 506 1.006832 CCTCTTTTCCCGTACGCATG 58.993 55.000 10.49 0.16 0.00 4.06
493 508 0.320858 TCTTTTCCCGTACGCATGCA 60.321 50.000 19.57 0.00 0.00 3.96
497 512 3.566853 CCCGTACGCATGCAGCAG 61.567 66.667 19.57 3.36 46.13 4.24
498 513 4.228097 CCGTACGCATGCAGCAGC 62.228 66.667 19.57 3.97 46.13 5.25
542 561 1.743252 GCAAGAGGAGGAACGGCAG 60.743 63.158 0.00 0.00 0.00 4.85
554 573 4.060038 CGGCAGCCCCAAAAGCAG 62.060 66.667 5.63 0.00 0.00 4.24
739 785 4.629523 GTGGGACGGCCGAAACCA 62.630 66.667 35.90 30.65 33.83 3.67
740 786 3.642503 TGGGACGGCCGAAACCAT 61.643 61.111 35.90 8.10 33.83 3.55
741 787 2.291801 TGGGACGGCCGAAACCATA 61.292 57.895 35.90 19.57 33.83 2.74
742 788 1.523032 GGGACGGCCGAAACCATAG 60.523 63.158 35.90 0.00 33.83 2.23
743 789 1.219935 GGACGGCCGAAACCATAGT 59.780 57.895 35.90 5.18 0.00 2.12
877 946 4.825679 CACCCCCTCCCTCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
1222 1304 3.069318 GGAAGGAGCCGGAGTCGT 61.069 66.667 5.05 0.00 33.95 4.34
1223 1305 2.490685 GAAGGAGCCGGAGTCGTC 59.509 66.667 5.05 0.00 33.95 4.20
1224 1306 3.398353 GAAGGAGCCGGAGTCGTCG 62.398 68.421 5.05 0.00 33.95 5.12
1225 1307 4.719106 AGGAGCCGGAGTCGTCGT 62.719 66.667 5.05 0.00 33.95 4.34
1226 1308 4.176851 GGAGCCGGAGTCGTCGTC 62.177 72.222 5.05 0.00 33.95 4.20
1227 1309 4.517703 GAGCCGGAGTCGTCGTCG 62.518 72.222 5.05 0.00 38.55 5.12
1229 1311 4.808238 GCCGGAGTCGTCGTCGTC 62.808 72.222 5.05 0.00 38.33 4.20
1230 1312 4.495939 CCGGAGTCGTCGTCGTCG 62.496 72.222 0.00 5.50 38.33 5.12
1231 1313 4.495939 CGGAGTCGTCGTCGTCGG 62.496 72.222 11.74 0.00 38.33 4.79
1232 1314 4.808238 GGAGTCGTCGTCGTCGGC 62.808 72.222 8.41 8.41 38.40 5.54
1320 1417 5.453903 GGAGATGAAATTGATCGAGGAGGAA 60.454 44.000 0.00 0.00 0.00 3.36
1513 1631 6.195700 ACCAAGGTATATATGGCGTCTATCT 58.804 40.000 0.00 0.00 37.77 1.98
1572 1697 4.771590 TCATGTTCTTCTTTCATGCACC 57.228 40.909 0.00 0.00 38.82 5.01
1649 1774 4.632688 GCTCTAGGCGGTATGTTTTGTTTA 59.367 41.667 0.00 0.00 0.00 2.01
1857 1984 6.710744 AGGTGAACCATTTTTACTACTGAGTG 59.289 38.462 1.62 0.00 35.85 3.51
1862 1989 4.876107 CCATTTTTACTACTGAGTGCGGAT 59.124 41.667 0.00 0.00 36.28 4.18
1868 1995 7.534085 TTTACTACTGAGTGCGGATAAATTG 57.466 36.000 0.00 0.00 36.28 2.32
2045 2178 6.682746 TGTTGAAGTGTTGTGCTTCTTTTTA 58.317 32.000 6.61 0.00 41.94 1.52
2046 2179 6.584563 TGTTGAAGTGTTGTGCTTCTTTTTAC 59.415 34.615 6.61 0.00 41.94 2.01
2048 2181 6.551736 TGAAGTGTTGTGCTTCTTTTTACTC 58.448 36.000 6.61 0.00 41.94 2.59
2049 2182 6.150307 TGAAGTGTTGTGCTTCTTTTTACTCA 59.850 34.615 6.61 0.00 41.94 3.41
2050 2183 6.124088 AGTGTTGTGCTTCTTTTTACTCAG 57.876 37.500 0.00 0.00 0.00 3.35
2051 2184 5.648092 AGTGTTGTGCTTCTTTTTACTCAGT 59.352 36.000 0.00 0.00 0.00 3.41
2052 2185 6.151144 AGTGTTGTGCTTCTTTTTACTCAGTT 59.849 34.615 0.00 0.00 0.00 3.16
2056 2189 5.353123 TGTGCTTCTTTTTACTCAGTTCGTT 59.647 36.000 0.00 0.00 0.00 3.85
2057 2190 6.128117 TGTGCTTCTTTTTACTCAGTTCGTTT 60.128 34.615 0.00 0.00 0.00 3.60
2059 2192 7.272731 GTGCTTCTTTTTACTCAGTTCGTTTTT 59.727 33.333 0.00 0.00 0.00 1.94
2060 2193 7.272515 TGCTTCTTTTTACTCAGTTCGTTTTTG 59.727 33.333 0.00 0.00 0.00 2.44
2125 2261 4.302455 GGATACTGTGCTGTGTATGCTAG 58.698 47.826 0.00 0.00 35.53 3.42
2251 2388 7.124052 TCCTTTTAGCACACTAGGACTAGTAT 58.876 38.462 11.37 0.00 43.98 2.12
2501 2638 9.650539 TTTATTGTCCCAAATTATGTGTGAATG 57.349 29.630 0.00 0.00 0.00 2.67
2505 2642 7.321908 TGTCCCAAATTATGTGTGAATGAATG 58.678 34.615 0.00 0.00 0.00 2.67
2522 2659 7.661027 TGAATGAATGTGATCTGTGTTACTTCA 59.339 33.333 0.00 0.00 0.00 3.02
2562 2699 8.677300 GTCATGGATAATGTTCAAGCTCTTTTA 58.323 33.333 0.00 0.00 37.56 1.52
2578 2715 6.363357 AGCTCTTTTAATTTCGTTTGCATGAC 59.637 34.615 0.00 0.00 0.00 3.06
2703 2840 3.256704 TGGGACAGAGGGAGTATGTTTT 58.743 45.455 0.00 0.00 27.90 2.43
2899 3037 4.257731 TCCTAAACGCAATTCAGCATGTA 58.742 39.130 0.00 0.00 37.40 2.29
2909 3047 5.297776 GCAATTCAGCATGTACCTAAGACAT 59.702 40.000 0.00 0.00 38.05 3.06
3275 3430 4.818546 CAGCAGGTAACCATTTCTGGATAG 59.181 45.833 0.00 0.00 46.37 2.08
3291 3447 5.874810 TCTGGATAGTTACATCTGTTGCAAC 59.125 40.000 22.83 22.83 32.58 4.17
3365 3540 9.959721 TTAAAAGATATATAGACTTGGATGGCC 57.040 33.333 0.00 0.00 0.00 5.36
3596 3784 1.560611 TGTGGGATCATCTGATGCACA 59.439 47.619 18.60 18.60 43.56 4.57
3704 3892 6.959311 GGCATCAAACTAAATACTGTACGTTG 59.041 38.462 0.00 0.00 0.00 4.10
3763 3953 8.258007 TGAAGGTACCATAACTGACATTCTTAG 58.742 37.037 15.94 0.00 34.56 2.18
3972 4162 2.693267 AGGTACGAAATGAGAAGGCC 57.307 50.000 0.00 0.00 0.00 5.19
3994 4184 2.479566 AGATTTTCTTGCGCTCCTCA 57.520 45.000 9.73 0.00 0.00 3.86
4026 4216 6.595716 GGAATGCACTCTGTAAGAAGTATGTT 59.404 38.462 0.00 0.00 46.34 2.71
4167 4357 5.616270 TGCTATGGCGATCCTAATAAAACA 58.384 37.500 0.00 0.00 42.25 2.83
4173 4363 5.355910 TGGCGATCCTAATAAAACAGGAAAC 59.644 40.000 0.00 0.00 44.03 2.78
4576 4781 4.329462 TTTGGGTTAGTTTTCATGTGGC 57.671 40.909 0.00 0.00 0.00 5.01
4915 5121 2.983879 CGGGCCTTTCTGTGGGGAT 61.984 63.158 0.84 0.00 0.00 3.85
5028 5235 0.113385 TCCCAAAATTCCCGCTTCCA 59.887 50.000 0.00 0.00 0.00 3.53
5031 5238 1.668628 CCAAAATTCCCGCTTCCAACG 60.669 52.381 0.00 0.00 0.00 4.10
5263 5472 5.880332 TGCACTATCTGATTTACCAAAGGTC 59.120 40.000 0.00 0.00 37.09 3.85
5323 5536 6.591062 GGAATGCTGCTTGAATTTTGTTATGA 59.409 34.615 0.00 0.00 0.00 2.15
5377 5590 8.616076 GTTCCAAACTATCAACCTAATGATCTG 58.384 37.037 0.00 0.00 40.44 2.90
5469 5682 4.198530 TCTTGAGTGTGCAAACTTCATGA 58.801 39.130 11.77 13.99 0.00 3.07
5525 5747 2.436417 TGCCTTCTGTCTTTGCATACC 58.564 47.619 0.00 0.00 0.00 2.73
5527 5749 2.369394 CCTTCTGTCTTTGCATACCCC 58.631 52.381 0.00 0.00 0.00 4.95
5533 5755 1.207329 GTCTTTGCATACCCCGAGTCT 59.793 52.381 0.00 0.00 0.00 3.24
5841 6075 4.206375 TCATGTTCTTTCTCTTGTTGCCA 58.794 39.130 0.00 0.00 0.00 4.92
5842 6076 4.644234 TCATGTTCTTTCTCTTGTTGCCAA 59.356 37.500 0.00 0.00 0.00 4.52
5848 6084 1.981256 TCTCTTGTTGCCAACCTTCC 58.019 50.000 4.90 0.00 0.00 3.46
5857 6094 2.223745 TGCCAACCTTCCGTTTCTTAC 58.776 47.619 0.00 0.00 29.93 2.34
5913 6150 0.696143 TGAAGGGTGTCCAGGTTGGA 60.696 55.000 0.00 0.00 45.98 3.53
6134 6371 4.958509 AGTATGCTGATGATCCTTCTGTG 58.041 43.478 0.00 0.00 0.00 3.66
6241 6481 2.116983 TTGTCACCAGAGCTGAGCCC 62.117 60.000 0.00 0.00 0.00 5.19
6278 6518 6.691508 AGCCATTAACAAATTTCTGGTCTTC 58.308 36.000 0.00 0.00 0.00 2.87
6308 6548 6.751425 TGATTTTATAACTTGCCGATTGCTTG 59.249 34.615 0.00 0.00 42.00 4.01
6352 6594 4.622740 GGTGTTTTGCAGATTATCTTGCAC 59.377 41.667 15.21 8.17 32.93 4.57
6382 6624 2.267681 ATCGAGTTCTGACCGTCCGC 62.268 60.000 0.00 0.00 0.00 5.54
6550 6792 3.953612 CAGTAGCTCTGAATCTCTGGACT 59.046 47.826 7.22 0.00 46.27 3.85
6902 7150 9.498307 CAACTCTTGAAACGTTTGTAACTTAAT 57.502 29.630 20.10 0.00 0.00 1.40
6904 7152 9.498307 ACTCTTGAAACGTTTGTAACTTAATTG 57.502 29.630 20.10 0.70 0.00 2.32
6910 7158 8.623310 AAACGTTTGTAACTTAATTGAGGTTG 57.377 30.769 13.81 0.00 0.00 3.77
6913 7161 7.496591 ACGTTTGTAACTTAATTGAGGTTGAGA 59.503 33.333 1.95 0.00 0.00 3.27
6915 7163 9.612620 GTTTGTAACTTAATTGAGGTTGAGATG 57.387 33.333 1.95 0.00 0.00 2.90
6918 7166 9.653287 TGTAACTTAATTGAGGTTGAGATGTAG 57.347 33.333 1.95 0.00 0.00 2.74
6919 7167 7.617041 AACTTAATTGAGGTTGAGATGTAGC 57.383 36.000 1.95 0.00 0.00 3.58
6922 7170 0.824109 TGAGGTTGAGATGTAGCCCG 59.176 55.000 0.00 0.00 0.00 6.13
6926 7174 2.103263 AGGTTGAGATGTAGCCCGATTC 59.897 50.000 0.00 0.00 0.00 2.52
6927 7175 2.158957 GGTTGAGATGTAGCCCGATTCA 60.159 50.000 0.00 0.00 0.00 2.57
6928 7176 3.531538 GTTGAGATGTAGCCCGATTCAA 58.468 45.455 0.00 0.00 0.00 2.69
6929 7177 3.904800 TGAGATGTAGCCCGATTCAAA 57.095 42.857 0.00 0.00 0.00 2.69
6930 7178 4.214986 TGAGATGTAGCCCGATTCAAAA 57.785 40.909 0.00 0.00 0.00 2.44
6932 7180 4.192317 GAGATGTAGCCCGATTCAAAACT 58.808 43.478 0.00 0.00 0.00 2.66
6933 7181 3.941483 AGATGTAGCCCGATTCAAAACTG 59.059 43.478 0.00 0.00 0.00 3.16
6936 7184 1.247567 AGCCCGATTCAAAACTGGTG 58.752 50.000 0.00 0.00 0.00 4.17
6937 7185 0.243636 GCCCGATTCAAAACTGGTGG 59.756 55.000 0.00 0.00 0.00 4.61
6938 7186 0.243636 CCCGATTCAAAACTGGTGGC 59.756 55.000 0.00 0.00 0.00 5.01
6939 7187 0.958091 CCGATTCAAAACTGGTGGCA 59.042 50.000 0.00 0.00 0.00 4.92
6940 7188 1.335872 CCGATTCAAAACTGGTGGCAC 60.336 52.381 9.70 9.70 0.00 5.01
6941 7189 1.336440 CGATTCAAAACTGGTGGCACA 59.664 47.619 20.82 4.78 0.00 4.57
6942 7190 2.223688 CGATTCAAAACTGGTGGCACAA 60.224 45.455 20.82 7.38 44.16 3.33
6943 7191 2.957491 TTCAAAACTGGTGGCACAAG 57.043 45.000 20.50 20.50 44.16 3.16
7012 7287 3.008835 ACCGCTATACTGTGGTCTGTA 57.991 47.619 0.00 0.00 46.69 2.74
7087 7362 4.916983 TTGCAGCTTTAGAATTGTGTGT 57.083 36.364 0.00 0.00 0.00 3.72
7088 7363 4.488126 TGCAGCTTTAGAATTGTGTGTC 57.512 40.909 0.00 0.00 0.00 3.67
7089 7364 4.136796 TGCAGCTTTAGAATTGTGTGTCT 58.863 39.130 0.00 0.00 0.00 3.41
7090 7365 4.023792 TGCAGCTTTAGAATTGTGTGTCTG 60.024 41.667 0.00 0.00 0.00 3.51
7091 7366 4.023707 GCAGCTTTAGAATTGTGTGTCTGT 60.024 41.667 0.00 0.00 0.00 3.41
7092 7367 5.683859 CAGCTTTAGAATTGTGTGTCTGTC 58.316 41.667 0.00 0.00 0.00 3.51
7093 7368 5.468072 CAGCTTTAGAATTGTGTGTCTGTCT 59.532 40.000 0.00 0.00 0.00 3.41
7094 7369 6.646653 CAGCTTTAGAATTGTGTGTCTGTCTA 59.353 38.462 0.00 0.00 0.00 2.59
7095 7370 7.332926 CAGCTTTAGAATTGTGTGTCTGTCTAT 59.667 37.037 0.00 0.00 0.00 1.98
7096 7371 7.880195 AGCTTTAGAATTGTGTGTCTGTCTATT 59.120 33.333 0.00 0.00 0.00 1.73
7097 7372 8.171840 GCTTTAGAATTGTGTGTCTGTCTATTC 58.828 37.037 0.00 0.00 0.00 1.75
7098 7373 8.547967 TTTAGAATTGTGTGTCTGTCTATTCC 57.452 34.615 0.00 0.00 0.00 3.01
7099 7374 6.365970 AGAATTGTGTGTCTGTCTATTCCT 57.634 37.500 0.00 0.00 0.00 3.36
7100 7375 6.773638 AGAATTGTGTGTCTGTCTATTCCTT 58.226 36.000 0.00 0.00 0.00 3.36
7101 7376 7.227156 AGAATTGTGTGTCTGTCTATTCCTTT 58.773 34.615 0.00 0.00 0.00 3.11
7102 7377 8.375506 AGAATTGTGTGTCTGTCTATTCCTTTA 58.624 33.333 0.00 0.00 0.00 1.85
7103 7378 8.553459 AATTGTGTGTCTGTCTATTCCTTTAG 57.447 34.615 0.00 0.00 0.00 1.85
7104 7379 6.911250 TGTGTGTCTGTCTATTCCTTTAGA 57.089 37.500 0.00 0.00 0.00 2.10
7105 7380 7.297936 TGTGTGTCTGTCTATTCCTTTAGAA 57.702 36.000 0.00 0.00 39.32 2.10
7107 7382 7.819415 TGTGTGTCTGTCTATTCCTTTAGAATG 59.181 37.037 0.00 0.00 45.11 2.67
7108 7383 8.035394 GTGTGTCTGTCTATTCCTTTAGAATGA 58.965 37.037 0.00 0.00 45.11 2.57
7109 7384 8.593679 TGTGTCTGTCTATTCCTTTAGAATGAA 58.406 33.333 0.00 0.00 45.11 2.57
7110 7385 9.436957 GTGTCTGTCTATTCCTTTAGAATGAAA 57.563 33.333 0.00 0.00 45.11 2.69
7113 7388 9.167311 TCTGTCTATTCCTTTAGAATGAAAAGC 57.833 33.333 0.00 0.00 45.11 3.51
7114 7389 9.171877 CTGTCTATTCCTTTAGAATGAAAAGCT 57.828 33.333 0.00 0.00 45.11 3.74
7120 7395 7.701539 TCCTTTAGAATGAAAAGCTATTGCA 57.298 32.000 1.12 0.00 42.74 4.08
7121 7396 7.765307 TCCTTTAGAATGAAAAGCTATTGCAG 58.235 34.615 1.12 0.00 42.74 4.41
7143 7418 3.575687 GCTATTGCCCCTATGCAGAAATT 59.424 43.478 0.00 0.00 43.21 1.82
7144 7419 4.039609 GCTATTGCCCCTATGCAGAAATTT 59.960 41.667 0.00 0.00 43.21 1.82
7205 7480 7.239763 TGGTTTGTCATCACTCAATAGTAGA 57.760 36.000 0.00 0.00 33.48 2.59
7479 7803 5.585445 CAGCTCTTCATGCTACTTCTGAATT 59.415 40.000 0.00 0.00 38.92 2.17
7498 7822 6.166982 TGAATTACATGATACCAACACGACA 58.833 36.000 0.00 0.00 0.00 4.35
7545 7869 5.030295 CCGCACATTCACTCAATATGTTTC 58.970 41.667 0.00 0.00 30.45 2.78
7624 7948 5.389859 TCATGTCCACAAATCCACATTTC 57.610 39.130 0.00 0.00 28.97 2.17
7700 8037 2.677875 GCACTCCCTTGCCCCTTG 60.678 66.667 0.00 0.00 36.42 3.61
7701 8038 2.036256 CACTCCCTTGCCCCTTGG 59.964 66.667 0.00 0.00 0.00 3.61
7702 8039 2.452491 ACTCCCTTGCCCCTTGGT 60.452 61.111 0.00 0.00 0.00 3.67
7703 8040 2.036256 CTCCCTTGCCCCTTGGTG 59.964 66.667 0.00 0.00 0.00 4.17
7704 8041 3.589542 TCCCTTGCCCCTTGGTGG 61.590 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.928733 GCATTCAAACAGATTGTCAAATAACAT 58.071 29.630 0.00 0.00 40.11 2.71
14 15 7.924947 TGCATTCAAACAGATTGTCAAATAACA 59.075 29.630 0.00 0.00 40.11 2.41
15 16 8.296799 TGCATTCAAACAGATTGTCAAATAAC 57.703 30.769 0.00 0.00 40.11 1.89
16 17 8.883954 TTGCATTCAAACAGATTGTCAAATAA 57.116 26.923 0.00 0.00 40.11 1.40
17 18 8.883954 TTTGCATTCAAACAGATTGTCAAATA 57.116 26.923 0.00 0.00 40.11 1.40
18 19 7.789273 TTTGCATTCAAACAGATTGTCAAAT 57.211 28.000 0.00 0.00 40.11 2.32
19 20 7.494952 TGATTTGCATTCAAACAGATTGTCAAA 59.505 29.630 0.00 0.00 44.11 2.69
20 21 6.985059 TGATTTGCATTCAAACAGATTGTCAA 59.015 30.769 0.00 0.00 44.11 3.18
21 22 6.514063 TGATTTGCATTCAAACAGATTGTCA 58.486 32.000 0.00 0.00 44.11 3.58
22 23 7.410800 TTGATTTGCATTCAAACAGATTGTC 57.589 32.000 9.47 0.00 44.11 3.18
23 24 7.442969 ACATTGATTTGCATTCAAACAGATTGT 59.557 29.630 14.40 10.83 44.11 2.71
24 25 7.802738 ACATTGATTTGCATTCAAACAGATTG 58.197 30.769 14.40 10.35 44.11 2.67
25 26 7.972832 ACATTGATTTGCATTCAAACAGATT 57.027 28.000 14.40 0.00 44.11 2.40
26 27 9.491675 TTTACATTGATTTGCATTCAAACAGAT 57.508 25.926 14.40 0.00 44.11 2.90
27 28 8.883954 TTTACATTGATTTGCATTCAAACAGA 57.116 26.923 14.40 2.60 44.11 3.41
35 36 9.195411 CGCCTAATATTTACATTGATTTGCATT 57.805 29.630 0.00 0.00 0.00 3.56
36 37 7.814107 CCGCCTAATATTTACATTGATTTGCAT 59.186 33.333 0.00 0.00 0.00 3.96
37 38 7.144661 CCGCCTAATATTTACATTGATTTGCA 58.855 34.615 0.00 0.00 0.00 4.08
38 39 6.089417 GCCGCCTAATATTTACATTGATTTGC 59.911 38.462 0.00 0.00 0.00 3.68
39 40 6.586082 GGCCGCCTAATATTTACATTGATTTG 59.414 38.462 0.71 0.00 0.00 2.32
40 41 6.266558 TGGCCGCCTAATATTTACATTGATTT 59.733 34.615 11.61 0.00 0.00 2.17
41 42 5.772672 TGGCCGCCTAATATTTACATTGATT 59.227 36.000 11.61 0.00 0.00 2.57
42 43 5.183140 GTGGCCGCCTAATATTTACATTGAT 59.817 40.000 11.61 0.00 0.00 2.57
43 44 4.517453 GTGGCCGCCTAATATTTACATTGA 59.483 41.667 11.61 0.00 0.00 2.57
44 45 4.612712 CGTGGCCGCCTAATATTTACATTG 60.613 45.833 11.56 0.00 0.00 2.82
45 46 3.500680 CGTGGCCGCCTAATATTTACATT 59.499 43.478 11.56 0.00 0.00 2.71
46 47 3.071479 CGTGGCCGCCTAATATTTACAT 58.929 45.455 11.56 0.00 0.00 2.29
47 48 2.485903 CGTGGCCGCCTAATATTTACA 58.514 47.619 11.56 0.00 0.00 2.41
62 63 2.717485 CATATGTGCAGGCGTGGC 59.283 61.111 8.72 1.33 0.00 5.01
63 64 2.188829 CCCATATGTGCAGGCGTGG 61.189 63.158 8.72 0.00 0.00 4.94
64 65 1.439353 GACCCATATGTGCAGGCGTG 61.439 60.000 1.01 1.01 0.00 5.34
65 66 1.153168 GACCCATATGTGCAGGCGT 60.153 57.895 1.24 0.00 0.00 5.68
66 67 2.246739 CGACCCATATGTGCAGGCG 61.247 63.158 1.24 0.00 0.00 5.52
67 68 1.893808 CCGACCCATATGTGCAGGC 60.894 63.158 1.24 0.00 0.00 4.85
68 69 1.893808 GCCGACCCATATGTGCAGG 60.894 63.158 1.24 0.00 0.00 4.85
69 70 2.246739 CGCCGACCCATATGTGCAG 61.247 63.158 1.24 0.00 0.00 4.41
70 71 2.203001 CGCCGACCCATATGTGCA 60.203 61.111 1.24 0.00 0.00 4.57
71 72 3.649986 GCGCCGACCCATATGTGC 61.650 66.667 0.00 0.00 0.00 4.57
72 73 3.337889 CGCGCCGACCCATATGTG 61.338 66.667 0.00 0.00 0.00 3.21
73 74 3.379865 AACGCGCCGACCCATATGT 62.380 57.895 5.73 0.00 0.00 2.29
74 75 2.587753 AACGCGCCGACCCATATG 60.588 61.111 5.73 0.00 0.00 1.78
75 76 2.587753 CAACGCGCCGACCCATAT 60.588 61.111 5.73 0.00 0.00 1.78
76 77 4.823419 CCAACGCGCCGACCCATA 62.823 66.667 5.73 0.00 0.00 2.74
95 96 3.039202 GATTTGGGTCGGCAGCACG 62.039 63.158 0.00 0.00 0.00 5.34
96 97 0.392461 TAGATTTGGGTCGGCAGCAC 60.392 55.000 0.00 0.00 0.00 4.40
97 98 0.326595 TTAGATTTGGGTCGGCAGCA 59.673 50.000 0.00 0.00 0.00 4.41
98 99 1.401905 CTTTAGATTTGGGTCGGCAGC 59.598 52.381 0.00 0.00 0.00 5.25
99 100 2.939103 CTCTTTAGATTTGGGTCGGCAG 59.061 50.000 0.00 0.00 0.00 4.85
100 101 2.355716 CCTCTTTAGATTTGGGTCGGCA 60.356 50.000 0.00 0.00 0.00 5.69
101 102 2.289565 CCTCTTTAGATTTGGGTCGGC 58.710 52.381 0.00 0.00 0.00 5.54
102 103 2.919228 CCCTCTTTAGATTTGGGTCGG 58.081 52.381 0.00 0.00 33.49 4.79
103 104 2.289565 GCCCTCTTTAGATTTGGGTCG 58.710 52.381 0.00 0.00 39.97 4.79
104 105 2.289565 CGCCCTCTTTAGATTTGGGTC 58.710 52.381 0.00 0.00 39.97 4.46
105 106 1.064685 CCGCCCTCTTTAGATTTGGGT 60.065 52.381 0.00 0.00 39.97 4.51
106 107 1.211949 TCCGCCCTCTTTAGATTTGGG 59.788 52.381 0.00 0.00 40.74 4.12
107 108 2.289565 GTCCGCCCTCTTTAGATTTGG 58.710 52.381 0.00 0.00 0.00 3.28
108 109 1.933853 CGTCCGCCCTCTTTAGATTTG 59.066 52.381 0.00 0.00 0.00 2.32
109 110 1.742750 GCGTCCGCCCTCTTTAGATTT 60.743 52.381 0.00 0.00 34.56 2.17
110 111 0.179081 GCGTCCGCCCTCTTTAGATT 60.179 55.000 0.00 0.00 34.56 2.40
111 112 1.327690 TGCGTCCGCCCTCTTTAGAT 61.328 55.000 9.43 0.00 41.09 1.98
112 113 1.537814 TTGCGTCCGCCCTCTTTAGA 61.538 55.000 9.43 0.00 41.09 2.10
113 114 0.672401 TTTGCGTCCGCCCTCTTTAG 60.672 55.000 9.43 0.00 41.09 1.85
114 115 0.672401 CTTTGCGTCCGCCCTCTTTA 60.672 55.000 9.43 0.00 41.09 1.85
115 116 1.966451 CTTTGCGTCCGCCCTCTTT 60.966 57.895 9.43 0.00 41.09 2.52
116 117 2.358737 CTTTGCGTCCGCCCTCTT 60.359 61.111 9.43 0.00 41.09 2.85
117 118 3.626924 ACTTTGCGTCCGCCCTCT 61.627 61.111 9.43 0.00 41.09 3.69
118 119 3.423154 CACTTTGCGTCCGCCCTC 61.423 66.667 9.43 0.00 41.09 4.30
138 139 4.992511 TCCGTTTTGGGTCGGCCG 62.993 66.667 22.12 22.12 45.44 6.13
139 140 3.359523 GTCCGTTTTGGGTCGGCC 61.360 66.667 0.00 0.00 45.44 6.13
140 141 1.726533 TTTGTCCGTTTTGGGTCGGC 61.727 55.000 0.00 0.00 45.44 5.54
141 142 0.739561 TTTTGTCCGTTTTGGGTCGG 59.260 50.000 0.00 0.00 46.93 4.79
142 143 2.456010 CTTTTTGTCCGTTTTGGGTCG 58.544 47.619 0.00 0.00 38.76 4.79
143 144 2.198406 GCTTTTTGTCCGTTTTGGGTC 58.802 47.619 0.00 0.00 38.76 4.46
144 145 1.470112 CGCTTTTTGTCCGTTTTGGGT 60.470 47.619 0.00 0.00 38.76 4.51
145 146 1.202313 TCGCTTTTTGTCCGTTTTGGG 60.202 47.619 0.00 0.00 38.76 4.12
146 147 2.196295 TCGCTTTTTGTCCGTTTTGG 57.804 45.000 0.00 0.00 40.09 3.28
147 148 2.036086 CGTTCGCTTTTTGTCCGTTTTG 60.036 45.455 0.00 0.00 0.00 2.44
148 149 2.159544 TCGTTCGCTTTTTGTCCGTTTT 60.160 40.909 0.00 0.00 0.00 2.43
149 150 1.397692 TCGTTCGCTTTTTGTCCGTTT 59.602 42.857 0.00 0.00 0.00 3.60
150 151 1.008329 TCGTTCGCTTTTTGTCCGTT 58.992 45.000 0.00 0.00 0.00 4.44
151 152 1.008329 TTCGTTCGCTTTTTGTCCGT 58.992 45.000 0.00 0.00 0.00 4.69
152 153 2.093972 TTTCGTTCGCTTTTTGTCCG 57.906 45.000 0.00 0.00 0.00 4.79
153 154 2.650297 CGATTTCGTTCGCTTTTTGTCC 59.350 45.455 0.00 0.00 31.60 4.02
154 155 3.910097 CGATTTCGTTCGCTTTTTGTC 57.090 42.857 0.00 0.00 31.60 3.18
163 164 2.693285 GGACGGCGATTTCGTTCG 59.307 61.111 16.62 13.22 41.22 3.95
164 165 1.620413 AACGGACGGCGATTTCGTTC 61.620 55.000 16.62 0.00 39.40 3.95
165 166 1.223417 AAACGGACGGCGATTTCGTT 61.223 50.000 16.62 19.23 44.34 3.85
166 167 1.665599 AAACGGACGGCGATTTCGT 60.666 52.632 16.62 14.37 44.03 3.85
167 168 1.225637 CAAACGGACGGCGATTTCG 60.226 57.895 16.62 13.70 43.27 3.46
168 169 1.133869 CCAAACGGACGGCGATTTC 59.866 57.895 16.62 0.00 0.00 2.17
169 170 2.329614 CCCAAACGGACGGCGATTT 61.330 57.895 16.62 5.62 0.00 2.17
170 171 2.744709 CCCAAACGGACGGCGATT 60.745 61.111 16.62 0.00 0.00 3.34
171 172 3.945304 GACCCAAACGGACGGCGAT 62.945 63.158 16.62 0.00 34.64 4.58
172 173 4.668118 GACCCAAACGGACGGCGA 62.668 66.667 16.62 0.00 34.64 5.54
186 187 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
187 188 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
190 191 2.180159 TAGAGCAACTCCAACGGGCC 62.180 60.000 0.00 0.00 0.00 5.80
191 192 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
192 193 2.403252 ATTAGAGCAACTCCAACGGG 57.597 50.000 0.00 0.00 0.00 5.28
193 194 4.098044 TCTCTATTAGAGCAACTCCAACGG 59.902 45.833 14.75 0.00 42.04 4.44
194 195 5.038033 GTCTCTATTAGAGCAACTCCAACG 58.962 45.833 14.75 0.00 42.04 4.10
205 206 7.502895 TGTTAGCCTTACTGGTCTCTATTAGAG 59.497 40.741 13.60 13.60 38.87 2.43
206 207 7.284944 GTGTTAGCCTTACTGGTCTCTATTAGA 59.715 40.741 0.00 0.00 38.35 2.10
207 208 7.068348 TGTGTTAGCCTTACTGGTCTCTATTAG 59.932 40.741 0.00 0.00 38.35 1.73
208 209 6.893554 TGTGTTAGCCTTACTGGTCTCTATTA 59.106 38.462 0.00 0.00 38.35 0.98
209 210 5.720041 TGTGTTAGCCTTACTGGTCTCTATT 59.280 40.000 0.00 0.00 38.35 1.73
210 211 5.127356 GTGTGTTAGCCTTACTGGTCTCTAT 59.873 44.000 0.00 0.00 38.35 1.98
211 212 4.461781 GTGTGTTAGCCTTACTGGTCTCTA 59.538 45.833 0.00 0.00 38.35 2.43
212 213 3.258622 GTGTGTTAGCCTTACTGGTCTCT 59.741 47.826 0.00 0.00 38.35 3.10
213 214 3.258622 AGTGTGTTAGCCTTACTGGTCTC 59.741 47.826 0.00 0.00 38.35 3.36
214 215 3.240302 AGTGTGTTAGCCTTACTGGTCT 58.760 45.455 0.00 0.00 38.35 3.85
215 216 3.679824 AGTGTGTTAGCCTTACTGGTC 57.320 47.619 0.00 0.00 38.35 4.02
216 217 4.560108 CGTTAGTGTGTTAGCCTTACTGGT 60.560 45.833 0.00 0.00 38.35 4.00
217 218 3.924686 CGTTAGTGTGTTAGCCTTACTGG 59.075 47.826 0.00 0.00 39.35 4.00
218 219 3.924686 CCGTTAGTGTGTTAGCCTTACTG 59.075 47.826 0.00 0.00 0.00 2.74
219 220 3.615834 GCCGTTAGTGTGTTAGCCTTACT 60.616 47.826 0.00 0.00 0.00 2.24
220 221 2.669924 GCCGTTAGTGTGTTAGCCTTAC 59.330 50.000 0.00 0.00 0.00 2.34
221 222 2.564062 AGCCGTTAGTGTGTTAGCCTTA 59.436 45.455 0.00 0.00 0.00 2.69
222 223 1.346722 AGCCGTTAGTGTGTTAGCCTT 59.653 47.619 0.00 0.00 0.00 4.35
223 224 0.974383 AGCCGTTAGTGTGTTAGCCT 59.026 50.000 0.00 0.00 0.00 4.58
224 225 1.076332 CAGCCGTTAGTGTGTTAGCC 58.924 55.000 0.00 0.00 0.00 3.93
225 226 0.442699 GCAGCCGTTAGTGTGTTAGC 59.557 55.000 0.00 0.00 0.00 3.09
226 227 1.076332 GGCAGCCGTTAGTGTGTTAG 58.924 55.000 0.00 0.00 0.00 2.34
227 228 0.320946 GGGCAGCCGTTAGTGTGTTA 60.321 55.000 5.00 0.00 0.00 2.41
228 229 1.599797 GGGCAGCCGTTAGTGTGTT 60.600 57.895 5.00 0.00 0.00 3.32
229 230 2.032071 GGGCAGCCGTTAGTGTGT 59.968 61.111 5.00 0.00 0.00 3.72
230 231 2.031919 TGGGCAGCCGTTAGTGTG 59.968 61.111 5.00 0.00 0.00 3.82
231 232 2.347490 CTGGGCAGCCGTTAGTGT 59.653 61.111 5.00 0.00 0.00 3.55
232 233 1.741770 GACTGGGCAGCCGTTAGTG 60.742 63.158 16.75 1.83 0.00 2.74
233 234 1.553690 ATGACTGGGCAGCCGTTAGT 61.554 55.000 12.91 12.91 0.00 2.24
234 235 0.811616 GATGACTGGGCAGCCGTTAG 60.812 60.000 5.00 6.39 0.00 2.34
248 249 3.204306 TGGAATGCAGGATCTGATGAC 57.796 47.619 0.00 0.00 32.44 3.06
275 276 2.826488 TGGTTATGGAATGGGTTTGGG 58.174 47.619 0.00 0.00 0.00 4.12
320 330 1.609501 TCCCGTTGTGCTAGCTCCT 60.610 57.895 17.23 0.00 0.00 3.69
323 333 1.004918 GTGTCCCGTTGTGCTAGCT 60.005 57.895 17.23 0.00 0.00 3.32
324 334 0.882927 TTGTGTCCCGTTGTGCTAGC 60.883 55.000 8.10 8.10 0.00 3.42
325 335 1.148310 CTTGTGTCCCGTTGTGCTAG 58.852 55.000 0.00 0.00 0.00 3.42
326 336 0.882927 GCTTGTGTCCCGTTGTGCTA 60.883 55.000 0.00 0.00 0.00 3.49
350 361 2.665519 CGTGCACCGAAATTTTCTCCTG 60.666 50.000 12.15 1.57 39.56 3.86
352 363 1.963747 CGTGCACCGAAATTTTCTCC 58.036 50.000 12.15 0.00 39.56 3.71
419 430 0.457851 CTGCCCGTGGTTTGTTTGAA 59.542 50.000 0.00 0.00 0.00 2.69
420 431 0.394488 TCTGCCCGTGGTTTGTTTGA 60.394 50.000 0.00 0.00 0.00 2.69
421 432 0.030638 CTCTGCCCGTGGTTTGTTTG 59.969 55.000 0.00 0.00 0.00 2.93
422 433 1.106944 CCTCTGCCCGTGGTTTGTTT 61.107 55.000 0.00 0.00 0.00 2.83
423 434 1.528309 CCTCTGCCCGTGGTTTGTT 60.528 57.895 0.00 0.00 0.00 2.83
424 435 1.779061 ATCCTCTGCCCGTGGTTTGT 61.779 55.000 0.00 0.00 0.00 2.83
429 440 4.899239 GCGATCCTCTGCCCGTGG 62.899 72.222 0.00 0.00 0.00 4.94
467 482 2.344025 CGTACGGGAAAAGAGGAAAGG 58.656 52.381 7.57 0.00 0.00 3.11
488 503 3.826754 CCTGCTGGCTGCTGCATG 61.827 66.667 17.89 9.94 43.37 4.06
542 561 0.251341 TTCTCCTCTGCTTTTGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
554 573 2.011540 AACGCCGAAATCTTCTCCTC 57.988 50.000 0.00 0.00 0.00 3.71
624 651 0.462047 CTCTATTTCTGGCCGCGGTT 60.462 55.000 28.70 5.69 0.00 4.44
739 785 2.064581 GGAGGTGGTGGGCGACTAT 61.065 63.158 0.00 0.00 0.00 2.12
740 786 2.682494 GGAGGTGGTGGGCGACTA 60.682 66.667 0.00 0.00 0.00 2.59
770 816 4.994471 TGCACTGTGCTGGCTCGG 62.994 66.667 30.43 2.46 45.31 4.63
1239 1321 4.731853 TCCACCTCCATCGCCCCA 62.732 66.667 0.00 0.00 0.00 4.96
1291 1388 3.062763 CGATCAATTTCATCTCCTCCGG 58.937 50.000 0.00 0.00 0.00 5.14
1305 1402 3.230134 CTCCTCTTCCTCCTCGATCAAT 58.770 50.000 0.00 0.00 0.00 2.57
1446 1564 2.124570 CTGGCCTTGTCATCCGGG 60.125 66.667 3.32 0.00 0.00 5.73
1513 1631 2.065993 GCTACGTGCTGACAAGAGAA 57.934 50.000 0.00 0.00 38.95 2.87
1649 1774 3.072184 ACAACAAGGTGAGATCAAGAGCT 59.928 43.478 0.00 0.00 0.00 4.09
1857 1984 5.063060 ACGAACTGAGTAACAATTTATCCGC 59.937 40.000 0.00 0.00 0.00 5.54
1893 2023 8.338259 AGTCGATGAATAATCAATGCAACTAAC 58.662 33.333 0.00 0.00 39.49 2.34
1954 2084 4.395854 TCTTCATACGCTGCAATCATGTTT 59.604 37.500 0.00 0.00 0.00 2.83
1955 2085 3.940852 TCTTCATACGCTGCAATCATGTT 59.059 39.130 0.00 0.00 0.00 2.71
1956 2086 3.534554 TCTTCATACGCTGCAATCATGT 58.465 40.909 0.00 0.00 0.00 3.21
2045 2178 5.220796 GGCTAGAAACAAAAACGAACTGAGT 60.221 40.000 0.00 0.00 0.00 3.41
2046 2179 5.205565 GGCTAGAAACAAAAACGAACTGAG 58.794 41.667 0.00 0.00 0.00 3.35
2048 2181 4.915704 TGGCTAGAAACAAAAACGAACTG 58.084 39.130 0.00 0.00 0.00 3.16
2049 2182 5.767816 ATGGCTAGAAACAAAAACGAACT 57.232 34.783 0.00 0.00 0.00 3.01
2050 2183 5.974751 TGAATGGCTAGAAACAAAAACGAAC 59.025 36.000 0.00 0.00 0.00 3.95
2051 2184 6.137794 TGAATGGCTAGAAACAAAAACGAA 57.862 33.333 0.00 0.00 0.00 3.85
2052 2185 5.759506 TGAATGGCTAGAAACAAAAACGA 57.240 34.783 0.00 0.00 0.00 3.85
2056 2189 7.984050 TCACAAATTGAATGGCTAGAAACAAAA 59.016 29.630 0.00 0.00 0.00 2.44
2057 2190 7.437862 GTCACAAATTGAATGGCTAGAAACAAA 59.562 33.333 0.00 0.00 35.39 2.83
2059 2192 6.265196 AGTCACAAATTGAATGGCTAGAAACA 59.735 34.615 0.00 0.00 35.39 2.83
2060 2193 6.583806 CAGTCACAAATTGAATGGCTAGAAAC 59.416 38.462 0.00 0.00 44.93 2.78
2112 2248 4.621068 TGCAAATTCTAGCATACACAGC 57.379 40.909 0.00 0.00 35.51 4.40
2251 2388 5.187967 GGAGAGATCCCAGAAGACAAACTTA 59.812 44.000 0.00 0.00 39.13 2.24
2487 2624 8.963725 ACAGATCACATTCATTCACACATAATT 58.036 29.630 0.00 0.00 0.00 1.40
2498 2635 7.984422 TGAAGTAACACAGATCACATTCATT 57.016 32.000 0.00 0.00 0.00 2.57
2499 2636 7.984422 TTGAAGTAACACAGATCACATTCAT 57.016 32.000 0.00 0.00 0.00 2.57
2500 2637 7.800155 TTTGAAGTAACACAGATCACATTCA 57.200 32.000 0.00 0.00 0.00 2.57
2501 2638 9.683069 AAATTTGAAGTAACACAGATCACATTC 57.317 29.630 0.00 0.00 0.00 2.67
2562 2699 1.611491 ACCCGTCATGCAAACGAAATT 59.389 42.857 22.21 4.76 42.62 1.82
2578 2715 8.561738 AACATAGAATATTTTGCCTATACCCG 57.438 34.615 0.00 0.00 0.00 5.28
2703 2840 8.942338 AATAGCATGATCAGTAAACTTCGTTA 57.058 30.769 0.09 0.00 0.00 3.18
2717 2854 7.802251 GCAGTCACTCAAAATAATAGCATGATC 59.198 37.037 0.00 0.00 0.00 2.92
2884 3022 3.871006 TCTTAGGTACATGCTGAATTGCG 59.129 43.478 0.00 0.00 35.36 4.85
2899 3037 5.435686 TGACCTGCAAATATGTCTTAGGT 57.564 39.130 0.00 0.00 39.60 3.08
2909 3047 2.575735 TGGGTGAGATGACCTGCAAATA 59.424 45.455 0.00 0.00 36.14 1.40
2964 3102 2.616842 TCTGAAAGGAAAACACGCTTCC 59.383 45.455 0.00 0.00 42.40 3.46
3101 3239 4.220602 TCAGCAGAAGCATGACAAGTACTA 59.779 41.667 0.00 0.00 45.49 1.82
3102 3240 3.007290 TCAGCAGAAGCATGACAAGTACT 59.993 43.478 0.00 0.00 45.49 2.73
3103 3241 3.329386 TCAGCAGAAGCATGACAAGTAC 58.671 45.455 0.00 0.00 45.49 2.73
3365 3540 7.984050 ACCAGTTCAGTATAAGTTCATGATCAG 59.016 37.037 0.09 0.00 0.00 2.90
3596 3784 1.683385 GCAGAGTTGCTGTTTCCCTTT 59.317 47.619 0.00 0.00 46.95 3.11
3704 3892 6.743575 AAAGTATCAAGACAATAGGCACAC 57.256 37.500 0.00 0.00 0.00 3.82
3763 3953 3.291585 CATTTCTGCACGAGAACAACAC 58.708 45.455 0.00 0.00 40.60 3.32
3972 4162 1.734465 AGGAGCGCAAGAAAATCTTCG 59.266 47.619 11.47 7.25 33.78 3.79
3994 4184 1.202855 ACAGAGTGCATTCCAGTGCTT 60.203 47.619 5.47 0.00 45.27 3.91
4026 4216 2.965831 AGAAGAGTTGCTACTGTGGACA 59.034 45.455 5.27 0.00 33.84 4.02
4090 4280 8.358582 AGATCATTTGGTAGAGCTTCATTTTT 57.641 30.769 0.00 0.00 0.00 1.94
4167 4357 1.002134 CCACAGGCCATCGTTTCCT 60.002 57.895 5.01 0.00 0.00 3.36
4173 4363 1.308069 CCTTGAACCACAGGCCATCG 61.308 60.000 5.01 0.00 0.00 3.84
4236 4426 9.686683 ATACAAGCAAGGAAACAATAGATTACT 57.313 29.630 0.00 0.00 0.00 2.24
4313 4512 6.932960 ACCGCACCTATAAACATAATTCCTAC 59.067 38.462 0.00 0.00 0.00 3.18
4324 4523 3.502979 TGTTTTCCACCGCACCTATAAAC 59.497 43.478 0.00 0.00 0.00 2.01
4576 4781 7.399523 CCCTTTGAGAAATAACGAATTAGACG 58.600 38.462 0.00 0.00 0.00 4.18
4915 5121 2.372172 GACAAACCCCAGAAGGAAGAGA 59.628 50.000 0.00 0.00 38.24 3.10
5028 5235 2.482336 TCGCTTAACAACATCATGCGTT 59.518 40.909 0.00 0.00 42.11 4.84
5031 5238 2.677836 TCCTCGCTTAACAACATCATGC 59.322 45.455 0.00 0.00 0.00 4.06
5203 5412 6.431198 AGAGCTTTCTTTAAACGTTTGTCA 57.569 33.333 23.46 0.24 0.00 3.58
5290 5502 5.571784 TTCAAGCAGCATTCCAGAAATAG 57.428 39.130 0.00 0.00 0.00 1.73
5377 5590 3.383185 TGGGGTTAATGCGATTTTCCATC 59.617 43.478 0.00 0.00 0.00 3.51
5546 5768 3.706086 GCCACCCAGAATATTGGAAACAT 59.294 43.478 0.00 0.00 40.87 2.71
5558 5782 1.355381 ACATCATTGAGCCACCCAGAA 59.645 47.619 0.00 0.00 0.00 3.02
5842 6076 7.173032 AGAATAATTGGTAAGAAACGGAAGGT 58.827 34.615 0.00 0.00 0.00 3.50
5857 6094 4.089361 GCCCCCTGGAATAGAATAATTGG 58.911 47.826 0.00 0.00 0.00 3.16
6241 6481 1.923356 AATGGCTTACCTGGTTGTGG 58.077 50.000 3.84 0.00 36.63 4.17
6308 6548 6.767902 ACACCATCCATGTTCAGTCATAATAC 59.232 38.462 0.00 0.00 0.00 1.89
6352 6594 1.002134 AACTCGATGCTGGTTGGGG 60.002 57.895 0.00 0.00 0.00 4.96
6492 6734 6.231211 ACCATACAGTTGTAGTTCCTTTCAG 58.769 40.000 0.00 0.00 33.52 3.02
6550 6792 7.661437 ACACAAATCAGCTTCATACTAAAGACA 59.339 33.333 0.00 0.00 0.00 3.41
6902 7150 1.207089 CGGGCTACATCTCAACCTCAA 59.793 52.381 0.00 0.00 0.00 3.02
6903 7151 0.824109 CGGGCTACATCTCAACCTCA 59.176 55.000 0.00 0.00 0.00 3.86
6904 7152 1.112113 TCGGGCTACATCTCAACCTC 58.888 55.000 0.00 0.00 0.00 3.85
6910 7158 4.034510 CAGTTTTGAATCGGGCTACATCTC 59.965 45.833 0.00 0.00 0.00 2.75
6913 7161 3.016736 CCAGTTTTGAATCGGGCTACAT 58.983 45.455 0.00 0.00 0.00 2.29
6915 7163 2.161609 CACCAGTTTTGAATCGGGCTAC 59.838 50.000 0.00 0.00 0.00 3.58
6917 7165 1.247567 CACCAGTTTTGAATCGGGCT 58.752 50.000 0.00 0.00 0.00 5.19
6918 7166 0.243636 CCACCAGTTTTGAATCGGGC 59.756 55.000 0.00 0.00 0.00 6.13
6919 7167 0.243636 GCCACCAGTTTTGAATCGGG 59.756 55.000 0.00 0.00 0.00 5.14
6922 7170 3.383761 CTTGTGCCACCAGTTTTGAATC 58.616 45.455 0.00 0.00 0.00 2.52
6926 7174 0.461135 AGCTTGTGCCACCAGTTTTG 59.539 50.000 0.00 0.00 40.80 2.44
6927 7175 2.065899 TAGCTTGTGCCACCAGTTTT 57.934 45.000 0.00 0.00 40.80 2.43
6928 7176 2.292828 ATAGCTTGTGCCACCAGTTT 57.707 45.000 0.00 0.00 40.80 2.66
6929 7177 2.162681 GAATAGCTTGTGCCACCAGTT 58.837 47.619 0.00 0.00 40.80 3.16
6930 7178 1.614317 GGAATAGCTTGTGCCACCAGT 60.614 52.381 0.00 0.00 40.80 4.00
6932 7180 0.698238 AGGAATAGCTTGTGCCACCA 59.302 50.000 0.00 0.00 40.80 4.17
6933 7181 1.745653 GAAGGAATAGCTTGTGCCACC 59.254 52.381 0.00 0.00 40.80 4.61
6936 7184 2.991250 TCTGAAGGAATAGCTTGTGCC 58.009 47.619 0.00 0.00 40.80 5.01
6937 7185 4.637534 TGAATCTGAAGGAATAGCTTGTGC 59.362 41.667 0.00 0.00 40.05 4.57
6938 7186 6.111382 TCTGAATCTGAAGGAATAGCTTGTG 58.889 40.000 0.00 0.00 0.00 3.33
6939 7187 6.305272 TCTGAATCTGAAGGAATAGCTTGT 57.695 37.500 0.00 0.00 0.00 3.16
6940 7188 9.504708 AATATCTGAATCTGAAGGAATAGCTTG 57.495 33.333 0.00 0.00 0.00 4.01
6941 7189 9.504708 CAATATCTGAATCTGAAGGAATAGCTT 57.495 33.333 0.00 0.00 0.00 3.74
6942 7190 8.878211 TCAATATCTGAATCTGAAGGAATAGCT 58.122 33.333 0.00 0.00 0.00 3.32
6943 7191 9.153721 CTCAATATCTGAATCTGAAGGAATAGC 57.846 37.037 0.00 0.00 32.17 2.97
6995 7252 8.765219 CAAAATACATACAGACCACAGTATAGC 58.235 37.037 0.00 0.00 29.79 2.97
7082 7357 8.035394 TCATTCTAAAGGAATAGACAGACACAC 58.965 37.037 0.00 0.00 42.20 3.82
7083 7358 8.134202 TCATTCTAAAGGAATAGACAGACACA 57.866 34.615 0.00 0.00 42.20 3.72
7084 7359 9.436957 TTTCATTCTAAAGGAATAGACAGACAC 57.563 33.333 0.00 0.00 42.20 3.67
7087 7362 9.167311 GCTTTTCATTCTAAAGGAATAGACAGA 57.833 33.333 8.15 0.00 42.20 3.41
7088 7363 9.171877 AGCTTTTCATTCTAAAGGAATAGACAG 57.828 33.333 8.15 0.00 42.20 3.51
7094 7369 8.752187 TGCAATAGCTTTTCATTCTAAAGGAAT 58.248 29.630 0.00 0.00 42.43 3.01
7095 7370 8.121305 TGCAATAGCTTTTCATTCTAAAGGAA 57.879 30.769 0.00 0.00 42.74 3.36
7096 7371 7.701539 TGCAATAGCTTTTCATTCTAAAGGA 57.298 32.000 0.00 0.00 42.74 3.36
7097 7372 7.982371 CTGCAATAGCTTTTCATTCTAAAGG 57.018 36.000 0.00 0.00 42.74 3.11
7119 7394 1.072806 TCTGCATAGGGGCAATAGCTG 59.927 52.381 0.00 0.00 44.40 4.24
7120 7395 1.438469 TCTGCATAGGGGCAATAGCT 58.562 50.000 0.00 0.00 44.40 3.32
7121 7396 2.276732 TTCTGCATAGGGGCAATAGC 57.723 50.000 0.00 0.00 44.40 2.97
7122 7397 5.302568 TCAAATTTCTGCATAGGGGCAATAG 59.697 40.000 0.00 0.00 44.40 1.73
7123 7398 5.068987 GTCAAATTTCTGCATAGGGGCAATA 59.931 40.000 0.00 0.00 44.40 1.90
7124 7399 4.032310 TCAAATTTCTGCATAGGGGCAAT 58.968 39.130 0.00 0.00 44.40 3.56
7130 7405 8.653338 CAAGAATTTGTCAAATTTCTGCATAGG 58.347 33.333 21.51 4.57 40.97 2.57
7143 7418 5.769662 AGATGCTACACCAAGAATTTGTCAA 59.230 36.000 0.00 0.00 32.21 3.18
7144 7419 5.181811 CAGATGCTACACCAAGAATTTGTCA 59.818 40.000 0.00 0.00 32.21 3.58
7205 7480 6.942532 TTCAGTTCAAAGAACAGTATGCTT 57.057 33.333 11.92 0.00 42.53 3.91
7397 7674 3.937814 TCGGCTACACTGAAATCACAAT 58.062 40.909 0.00 0.00 0.00 2.71
7479 7803 3.517602 GCTGTCGTGTTGGTATCATGTA 58.482 45.455 0.00 0.00 0.00 2.29
7523 7847 5.030295 GGAAACATATTGAGTGAATGTGCG 58.970 41.667 0.00 0.00 36.80 5.34
7624 7948 8.361889 TGCAGGTATGGATCAAATAAAATCATG 58.638 33.333 0.00 0.00 0.00 3.07
7635 7959 0.918258 TGCCTGCAGGTATGGATCAA 59.082 50.000 32.81 5.96 37.57 2.57
7648 7972 0.677731 TTACATCTGCACCTGCCTGC 60.678 55.000 0.00 0.00 41.18 4.85
7700 8037 0.331616 AATCAGTAGTTGGCCCCACC 59.668 55.000 0.00 0.00 39.84 4.61
7701 8038 1.004277 TCAATCAGTAGTTGGCCCCAC 59.996 52.381 0.00 0.00 0.00 4.61
7702 8039 1.367346 TCAATCAGTAGTTGGCCCCA 58.633 50.000 0.00 0.00 0.00 4.96
7703 8040 2.301346 CATCAATCAGTAGTTGGCCCC 58.699 52.381 0.00 0.00 0.00 5.80
7704 8041 1.678101 GCATCAATCAGTAGTTGGCCC 59.322 52.381 0.00 0.00 0.00 5.80
7705 8042 2.648059 AGCATCAATCAGTAGTTGGCC 58.352 47.619 0.00 0.00 0.00 5.36
7706 8043 5.220931 CCTTTAGCATCAATCAGTAGTTGGC 60.221 44.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.