Multiple sequence alignment - TraesCS4D01G233500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G233500 chr4D 100.000 3887 0 0 1 3887 394147936 394144050 0.000000e+00 7179
1 TraesCS4D01G233500 chr4D 87.197 289 35 2 3592 3879 394139129 394138842 1.040000e-85 327
2 TraesCS4D01G233500 chr4B 95.233 3042 124 9 860 3887 483765881 483762847 0.000000e+00 4795
3 TraesCS4D01G233500 chr4B 88.581 289 31 2 3592 3879 483754918 483754631 2.220000e-92 350
4 TraesCS4D01G233500 chr4B 90.833 120 11 0 188 307 483766167 483766048 1.120000e-35 161
5 TraesCS4D01G233500 chr4B 80.114 176 25 7 323 496 89454804 89454971 5.270000e-24 122
6 TraesCS4D01G233500 chr4A 95.099 2163 95 5 850 3008 75429286 75427131 0.000000e+00 3397
7 TraesCS4D01G233500 chr4A 94.900 902 36 7 2988 3887 75427027 75426134 0.000000e+00 1402
8 TraesCS4D01G233500 chr4A 87.500 288 36 0 3592 3879 75422184 75421897 2.240000e-87 333
9 TraesCS4D01G233500 chr4A 85.321 327 35 6 150 466 75429744 75429421 3.750000e-85 326
10 TraesCS4D01G233500 chr4A 76.923 403 53 12 493 856 30740608 30741009 3.960000e-45 193
11 TraesCS4D01G233500 chr4A 93.023 129 8 1 22 150 75429806 75429679 1.840000e-43 187
12 TraesCS4D01G233500 chr4A 76.923 390 51 17 493 843 571784026 571784415 6.630000e-43 185
13 TraesCS4D01G233500 chr6A 81.579 380 41 13 493 856 53255979 53255613 1.770000e-73 287
14 TraesCS4D01G233500 chr7B 80.679 383 36 15 506 850 594412262 594412644 2.980000e-66 263
15 TraesCS4D01G233500 chr6D 80.353 397 36 20 494 849 15375999 15375604 2.980000e-66 263
16 TraesCS4D01G233500 chr1B 84.739 249 22 5 618 850 638956590 638956838 6.490000e-58 235
17 TraesCS4D01G233500 chr1B 82.778 180 17 8 321 496 532058941 532058772 8.700000e-32 148
18 TraesCS4D01G233500 chr7D 83.265 245 22 13 621 849 506664749 506664990 1.420000e-49 207
19 TraesCS4D01G233500 chr7D 82.787 244 25 11 621 848 506651299 506651541 6.590000e-48 202
20 TraesCS4D01G233500 chr7D 82.692 156 20 7 343 496 173900781 173900931 8.760000e-27 132
21 TraesCS4D01G233500 chr5B 77.525 396 50 11 493 849 611998832 611999227 6.590000e-48 202
22 TraesCS4D01G233500 chr3B 82.083 240 30 10 620 850 703031485 703031250 3.960000e-45 193
23 TraesCS4D01G233500 chr1A 82.627 236 23 12 624 843 67685842 67686075 3.960000e-45 193
24 TraesCS4D01G233500 chr1A 77.941 204 28 11 618 804 483132481 483132278 1.140000e-20 111
25 TraesCS4D01G233500 chr2B 77.003 387 55 9 493 850 381296359 381295978 1.430000e-44 191
26 TraesCS4D01G233500 chr2B 80.085 236 33 10 618 843 150539113 150538882 3.110000e-36 163
27 TraesCS4D01G233500 chr7A 76.826 397 53 11 493 850 534403536 534403140 1.840000e-43 187
28 TraesCS4D01G233500 chr7A 76.280 371 47 13 493 823 691288947 691288578 4.020000e-35 159
29 TraesCS4D01G233500 chr3A 80.894 246 31 8 620 849 141949923 141950168 3.090000e-41 180
30 TraesCS4D01G233500 chr3A 85.385 130 18 1 493 621 249861636 249861507 2.440000e-27 134
31 TraesCS4D01G233500 chr3D 82.682 179 24 6 322 496 394193433 394193608 6.730000e-33 152
32 TraesCS4D01G233500 chr3D 81.006 179 17 14 322 496 593111355 593111520 4.080000e-25 126
33 TraesCS4D01G233500 chr1D 82.609 184 21 7 322 499 343883234 343883056 6.730000e-33 152
34 TraesCS4D01G233500 chr5D 82.486 177 24 5 323 496 380691871 380692043 8.700000e-32 148
35 TraesCS4D01G233500 chr2D 82.123 179 20 9 321 496 86490633 86490802 4.050000e-30 143
36 TraesCS4D01G233500 chr2D 82.781 151 15 10 322 468 52235106 52235249 1.470000e-24 124
37 TraesCS4D01G233500 chr2D 82.677 127 19 3 494 618 42629052 42629177 4.110000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G233500 chr4D 394144050 394147936 3886 True 7179 7179 100.0000 1 3887 1 chr4D.!!$R2 3886
1 TraesCS4D01G233500 chr4B 483762847 483766167 3320 True 2478 4795 93.0330 188 3887 2 chr4B.!!$R2 3699
2 TraesCS4D01G233500 chr4A 75421897 75429806 7909 True 1129 3397 91.1686 22 3887 5 chr4A.!!$R1 3865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 690 0.033405 TTCCCTGGTCTAGTCCCTCG 60.033 60.0 3.42 0.0 0.00 4.63 F
692 693 0.034380 CCTGGTCTAGTCCCTCGTCA 60.034 60.0 3.42 0.0 0.00 4.35 F
850 851 0.098728 ATATTGCCAAACGCGCTGTC 59.901 50.0 5.73 0.0 42.08 3.51 F
2634 2710 0.796312 CGGACACCGGATTTGTTCTG 59.204 55.0 9.46 0.0 44.15 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2047 0.318529 CAGAGATCATCGCCGTCCAG 60.319 60.0 0.0 0.0 0.00 3.86 R
2097 2173 1.303799 CCAGACCAGCATGAGCACAC 61.304 60.0 0.0 0.0 45.49 3.82 R
2682 2758 1.308047 ATGCAACAGCAAGTCGTTCA 58.692 45.0 0.0 0.0 42.37 3.18 R
3497 3710 1.304891 ACTGAGAGCTACCCTCCTCT 58.695 55.0 0.0 0.0 41.74 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.676454 TGTTTACAAACTATGTGTTGTTGAAC 57.324 30.769 6.41 0.00 43.77 3.18
37 38 8.794406 GTTTACAAACTATGTGTTGTTGAACTG 58.206 33.333 0.00 0.00 43.77 3.16
42 43 2.645730 TGTGTTGTTGAACTGTTGGC 57.354 45.000 0.00 0.00 32.79 4.52
106 107 2.546373 GCAAAGCAAGGCATCAAGTTCA 60.546 45.455 0.00 0.00 0.00 3.18
115 116 1.000060 GCATCAAGTTCAAGCTTGCCA 60.000 47.619 21.99 7.82 43.92 4.92
131 132 4.614535 GCTTGCCAACTGTACAGAAGAATG 60.615 45.833 29.30 17.04 0.00 2.67
132 133 2.813754 TGCCAACTGTACAGAAGAATGC 59.186 45.455 29.30 19.67 0.00 3.56
133 134 3.077359 GCCAACTGTACAGAAGAATGCT 58.923 45.455 29.30 0.83 0.00 3.79
134 135 4.253685 GCCAACTGTACAGAAGAATGCTA 58.746 43.478 29.30 0.00 0.00 3.49
135 136 4.878397 GCCAACTGTACAGAAGAATGCTAT 59.122 41.667 29.30 0.00 0.00 2.97
136 137 5.355350 GCCAACTGTACAGAAGAATGCTATT 59.645 40.000 29.30 6.07 0.00 1.73
137 138 6.676456 GCCAACTGTACAGAAGAATGCTATTG 60.676 42.308 29.30 16.96 0.00 1.90
138 139 6.372659 CCAACTGTACAGAAGAATGCTATTGT 59.627 38.462 29.30 0.00 0.00 2.71
139 140 7.094634 CCAACTGTACAGAAGAATGCTATTGTT 60.095 37.037 29.30 5.75 0.00 2.83
140 141 8.935844 CAACTGTACAGAAGAATGCTATTGTTA 58.064 33.333 29.30 0.00 0.00 2.41
141 142 9.672673 AACTGTACAGAAGAATGCTATTGTTAT 57.327 29.630 29.30 0.00 0.00 1.89
142 143 9.672673 ACTGTACAGAAGAATGCTATTGTTATT 57.327 29.630 29.30 0.00 0.00 1.40
168 169 3.898380 TGCAAAGCAAGGCATCAAG 57.102 47.368 0.00 0.00 34.76 3.02
169 170 1.042229 TGCAAAGCAAGGCATCAAGT 58.958 45.000 0.00 0.00 34.76 3.16
170 171 1.413445 TGCAAAGCAAGGCATCAAGTT 59.587 42.857 0.00 0.00 34.76 2.66
171 172 2.064014 GCAAAGCAAGGCATCAAGTTC 58.936 47.619 0.00 0.00 0.00 3.01
172 173 2.546373 GCAAAGCAAGGCATCAAGTTCA 60.546 45.455 0.00 0.00 0.00 3.18
173 174 3.719924 CAAAGCAAGGCATCAAGTTCAA 58.280 40.909 0.00 0.00 0.00 2.69
174 175 3.655276 AAGCAAGGCATCAAGTTCAAG 57.345 42.857 0.00 0.00 0.00 3.02
175 176 2.590821 AGCAAGGCATCAAGTTCAAGT 58.409 42.857 0.00 0.00 0.00 3.16
176 177 2.961062 AGCAAGGCATCAAGTTCAAGTT 59.039 40.909 0.00 0.00 0.00 2.66
177 178 3.005155 AGCAAGGCATCAAGTTCAAGTTC 59.995 43.478 0.00 0.00 0.00 3.01
178 179 3.005155 GCAAGGCATCAAGTTCAAGTTCT 59.995 43.478 0.00 0.00 0.00 3.01
179 180 4.216257 GCAAGGCATCAAGTTCAAGTTCTA 59.784 41.667 0.00 0.00 0.00 2.10
180 181 5.618640 GCAAGGCATCAAGTTCAAGTTCTAG 60.619 44.000 0.00 0.00 0.00 2.43
181 182 4.006319 AGGCATCAAGTTCAAGTTCTAGC 58.994 43.478 0.00 0.00 0.00 3.42
182 183 4.006319 GGCATCAAGTTCAAGTTCTAGCT 58.994 43.478 0.00 0.00 0.00 3.32
183 184 4.457257 GGCATCAAGTTCAAGTTCTAGCTT 59.543 41.667 0.00 0.00 0.00 3.74
184 185 5.643777 GGCATCAAGTTCAAGTTCTAGCTTA 59.356 40.000 0.00 0.00 0.00 3.09
185 186 6.149474 GGCATCAAGTTCAAGTTCTAGCTTAA 59.851 38.462 0.00 0.00 0.00 1.85
186 187 7.018235 GCATCAAGTTCAAGTTCTAGCTTAAC 58.982 38.462 0.00 0.00 0.00 2.01
286 287 2.828877 ACCGTTGAAAATCAGACGTCA 58.171 42.857 19.50 0.00 32.85 4.35
319 320 6.155565 TCAAACCGAGGGAGTATCTTATTTGA 59.844 38.462 0.00 0.00 33.73 2.69
333 334 9.274206 GTATCTTATTTGAAGGACCCTGATAAC 57.726 37.037 0.00 0.00 0.00 1.89
335 336 8.618240 TCTTATTTGAAGGACCCTGATAACTA 57.382 34.615 0.00 0.00 0.00 2.24
337 338 5.431179 TTTGAAGGACCCTGATAACTACC 57.569 43.478 0.00 0.00 0.00 3.18
339 340 4.631234 TGAAGGACCCTGATAACTACCAT 58.369 43.478 0.00 0.00 0.00 3.55
341 342 6.390504 TGAAGGACCCTGATAACTACCATAT 58.609 40.000 0.00 0.00 0.00 1.78
350 351 5.364778 TGATAACTACCATATGTGTGGCAC 58.635 41.667 11.55 11.55 43.27 5.01
368 369 2.489751 GAAGCAATTTCGCCCCGG 59.510 61.111 0.00 0.00 0.00 5.73
436 437 6.165577 AGTTGTGAAGCATTTCAACTTTTGT 58.834 32.000 10.13 0.00 44.54 2.83
437 438 6.091169 AGTTGTGAAGCATTTCAACTTTTGTG 59.909 34.615 10.13 0.00 44.54 3.33
441 442 5.931146 TGAAGCATTTCAACTTTTGTGTTGT 59.069 32.000 7.17 0.00 45.26 3.32
443 444 7.275341 TGAAGCATTTCAACTTTTGTGTTGTAG 59.725 33.333 7.17 0.00 45.26 2.74
455 456 4.829064 TGTGTTGTAGATGGCAAGTTTC 57.171 40.909 0.00 0.00 0.00 2.78
460 461 5.359576 TGTTGTAGATGGCAAGTTTCAGTTT 59.640 36.000 0.00 0.00 0.00 2.66
461 462 5.689383 TGTAGATGGCAAGTTTCAGTTTC 57.311 39.130 0.00 0.00 0.00 2.78
462 463 5.376625 TGTAGATGGCAAGTTTCAGTTTCT 58.623 37.500 0.00 0.00 0.00 2.52
463 464 5.827797 TGTAGATGGCAAGTTTCAGTTTCTT 59.172 36.000 0.00 0.00 0.00 2.52
464 465 5.859205 AGATGGCAAGTTTCAGTTTCTTT 57.141 34.783 0.00 0.00 0.00 2.52
465 466 6.225981 AGATGGCAAGTTTCAGTTTCTTTT 57.774 33.333 0.00 0.00 0.00 2.27
498 499 5.975693 TTTTCGGATGGCAATTTTAGAGT 57.024 34.783 0.00 0.00 0.00 3.24
501 502 6.677781 TTCGGATGGCAATTTTAGAGTTAG 57.322 37.500 0.00 0.00 0.00 2.34
503 504 6.049149 TCGGATGGCAATTTTAGAGTTAGAG 58.951 40.000 0.00 0.00 0.00 2.43
504 505 5.237344 CGGATGGCAATTTTAGAGTTAGAGG 59.763 44.000 0.00 0.00 0.00 3.69
505 506 6.357367 GGATGGCAATTTTAGAGTTAGAGGA 58.643 40.000 0.00 0.00 0.00 3.71
506 507 7.001073 GGATGGCAATTTTAGAGTTAGAGGAT 58.999 38.462 0.00 0.00 0.00 3.24
507 508 7.040823 GGATGGCAATTTTAGAGTTAGAGGATG 60.041 40.741 0.00 0.00 0.00 3.51
508 509 6.122277 TGGCAATTTTAGAGTTAGAGGATGG 58.878 40.000 0.00 0.00 0.00 3.51
509 510 5.532779 GGCAATTTTAGAGTTAGAGGATGGG 59.467 44.000 0.00 0.00 0.00 4.00
510 511 6.357367 GCAATTTTAGAGTTAGAGGATGGGA 58.643 40.000 0.00 0.00 0.00 4.37
512 513 7.503902 GCAATTTTAGAGTTAGAGGATGGGAAT 59.496 37.037 0.00 0.00 0.00 3.01
513 514 9.413734 CAATTTTAGAGTTAGAGGATGGGAATT 57.586 33.333 0.00 0.00 0.00 2.17
519 520 8.986929 AGAGTTAGAGGATGGGAATTAAAATG 57.013 34.615 0.00 0.00 0.00 2.32
522 523 8.787818 AGTTAGAGGATGGGAATTAAAATGGTA 58.212 33.333 0.00 0.00 0.00 3.25
523 524 8.847196 GTTAGAGGATGGGAATTAAAATGGTAC 58.153 37.037 0.00 0.00 0.00 3.34
525 526 6.008696 AGGATGGGAATTAAAATGGTACGA 57.991 37.500 0.00 0.00 0.00 3.43
528 529 6.017357 GGATGGGAATTAAAATGGTACGAGAC 60.017 42.308 0.00 0.00 0.00 3.36
530 531 6.478129 TGGGAATTAAAATGGTACGAGACTT 58.522 36.000 0.00 0.00 0.00 3.01
532 533 6.596497 GGGAATTAAAATGGTACGAGACTTCA 59.404 38.462 0.00 0.00 0.00 3.02
534 535 8.508875 GGAATTAAAATGGTACGAGACTTCAAA 58.491 33.333 0.00 0.00 0.00 2.69
538 539 9.932207 TTAAAATGGTACGAGACTTCAAATCTA 57.068 29.630 0.00 0.00 0.00 1.98
540 541 9.449719 AAAATGGTACGAGACTTCAAATCTATT 57.550 29.630 0.00 0.00 0.00 1.73
542 543 6.931838 TGGTACGAGACTTCAAATCTATTGT 58.068 36.000 0.00 0.00 0.00 2.71
544 545 7.876068 TGGTACGAGACTTCAAATCTATTGTTT 59.124 33.333 0.00 0.00 0.00 2.83
545 546 8.169268 GGTACGAGACTTCAAATCTATTGTTTG 58.831 37.037 0.00 0.00 37.79 2.93
546 547 7.133891 ACGAGACTTCAAATCTATTGTTTGG 57.866 36.000 0.00 0.00 37.22 3.28
547 548 6.710744 ACGAGACTTCAAATCTATTGTTTGGT 59.289 34.615 0.00 0.00 37.22 3.67
548 549 7.228706 ACGAGACTTCAAATCTATTGTTTGGTT 59.771 33.333 0.00 0.00 37.22 3.67
549 550 8.717821 CGAGACTTCAAATCTATTGTTTGGTTA 58.282 33.333 0.00 0.00 37.22 2.85
551 552 9.014297 AGACTTCAAATCTATTGTTTGGTTAGG 57.986 33.333 0.00 0.00 37.22 2.69
552 553 8.122472 ACTTCAAATCTATTGTTTGGTTAGGG 57.878 34.615 0.00 0.00 37.22 3.53
553 554 7.178451 ACTTCAAATCTATTGTTTGGTTAGGGG 59.822 37.037 0.00 0.00 37.22 4.79
554 555 6.795590 TCAAATCTATTGTTTGGTTAGGGGA 58.204 36.000 0.00 0.00 37.22 4.81
555 556 7.418378 TCAAATCTATTGTTTGGTTAGGGGAT 58.582 34.615 0.00 0.00 37.22 3.85
556 557 8.561769 TCAAATCTATTGTTTGGTTAGGGGATA 58.438 33.333 0.00 0.00 37.22 2.59
557 558 8.850156 CAAATCTATTGTTTGGTTAGGGGATAG 58.150 37.037 0.00 0.00 33.91 2.08
558 559 6.509523 TCTATTGTTTGGTTAGGGGATAGG 57.490 41.667 0.00 0.00 0.00 2.57
559 560 6.214278 TCTATTGTTTGGTTAGGGGATAGGA 58.786 40.000 0.00 0.00 0.00 2.94
560 561 5.806955 ATTGTTTGGTTAGGGGATAGGAA 57.193 39.130 0.00 0.00 0.00 3.36
561 562 5.602291 TTGTTTGGTTAGGGGATAGGAAA 57.398 39.130 0.00 0.00 0.00 3.13
562 563 5.806955 TGTTTGGTTAGGGGATAGGAAAT 57.193 39.130 0.00 0.00 0.00 2.17
563 564 6.160483 TGTTTGGTTAGGGGATAGGAAATT 57.840 37.500 0.00 0.00 0.00 1.82
564 565 6.566914 TGTTTGGTTAGGGGATAGGAAATTT 58.433 36.000 0.00 0.00 0.00 1.82
565 566 7.710579 TGTTTGGTTAGGGGATAGGAAATTTA 58.289 34.615 0.00 0.00 0.00 1.40
566 567 8.348354 TGTTTGGTTAGGGGATAGGAAATTTAT 58.652 33.333 0.00 0.00 0.00 1.40
567 568 9.871175 GTTTGGTTAGGGGATAGGAAATTTATA 57.129 33.333 0.00 0.00 0.00 0.98
571 572 9.529823 GGTTAGGGGATAGGAAATTTATAAAGG 57.470 37.037 3.94 0.00 0.00 3.11
581 582 8.166422 AGGAAATTTATAAAGGAATAGGCACG 57.834 34.615 3.94 0.00 0.00 5.34
582 583 7.778382 AGGAAATTTATAAAGGAATAGGCACGT 59.222 33.333 3.94 0.00 0.00 4.49
583 584 7.860872 GGAAATTTATAAAGGAATAGGCACGTG 59.139 37.037 12.28 12.28 0.00 4.49
584 585 8.514330 AAATTTATAAAGGAATAGGCACGTGA 57.486 30.769 22.23 0.00 0.00 4.35
585 586 6.913873 TTTATAAAGGAATAGGCACGTGAC 57.086 37.500 22.23 18.98 0.00 3.67
586 587 4.755266 ATAAAGGAATAGGCACGTGACT 57.245 40.909 29.84 29.84 37.13 3.41
587 588 3.418684 AAAGGAATAGGCACGTGACTT 57.581 42.857 32.25 13.41 33.72 3.01
588 589 4.546829 AAAGGAATAGGCACGTGACTTA 57.453 40.909 32.25 15.93 33.72 2.24
589 590 4.546829 AAGGAATAGGCACGTGACTTAA 57.453 40.909 32.25 13.81 33.72 1.85
590 591 4.124851 AGGAATAGGCACGTGACTTAAG 57.875 45.455 32.25 0.00 33.72 1.85
591 592 3.767673 AGGAATAGGCACGTGACTTAAGA 59.232 43.478 32.25 12.45 33.72 2.10
592 593 3.864003 GGAATAGGCACGTGACTTAAGAC 59.136 47.826 32.25 16.03 33.72 3.01
593 594 4.381718 GGAATAGGCACGTGACTTAAGACT 60.382 45.833 32.25 5.62 33.72 3.24
594 595 4.803098 ATAGGCACGTGACTTAAGACTT 57.197 40.909 32.25 4.73 33.72 3.01
595 596 3.470645 AGGCACGTGACTTAAGACTTT 57.529 42.857 20.95 0.00 0.00 2.66
596 597 4.595762 AGGCACGTGACTTAAGACTTTA 57.404 40.909 20.95 0.00 0.00 1.85
597 598 4.952460 AGGCACGTGACTTAAGACTTTAA 58.048 39.130 20.95 0.00 0.00 1.52
598 599 4.748600 AGGCACGTGACTTAAGACTTTAAC 59.251 41.667 20.95 0.00 0.00 2.01
599 600 4.748600 GGCACGTGACTTAAGACTTTAACT 59.251 41.667 22.23 0.00 0.00 2.24
600 601 5.107568 GGCACGTGACTTAAGACTTTAACTC 60.108 44.000 22.23 0.00 0.00 3.01
601 602 5.107568 GCACGTGACTTAAGACTTTAACTCC 60.108 44.000 22.23 0.00 0.00 3.85
602 603 5.404667 CACGTGACTTAAGACTTTAACTCCC 59.595 44.000 10.90 0.00 0.00 4.30
603 604 5.069516 ACGTGACTTAAGACTTTAACTCCCA 59.930 40.000 10.09 0.00 0.00 4.37
604 605 6.164176 CGTGACTTAAGACTTTAACTCCCAT 58.836 40.000 10.09 0.00 0.00 4.00
605 606 6.310711 CGTGACTTAAGACTTTAACTCCCATC 59.689 42.308 10.09 0.00 0.00 3.51
606 607 6.310711 GTGACTTAAGACTTTAACTCCCATCG 59.689 42.308 10.09 0.00 0.00 3.84
607 608 6.014840 TGACTTAAGACTTTAACTCCCATCGT 60.015 38.462 10.09 0.00 0.00 3.73
608 609 6.766429 ACTTAAGACTTTAACTCCCATCGTT 58.234 36.000 10.09 0.00 0.00 3.85
609 610 7.222161 ACTTAAGACTTTAACTCCCATCGTTT 58.778 34.615 10.09 0.00 0.00 3.60
610 611 7.718314 ACTTAAGACTTTAACTCCCATCGTTTT 59.282 33.333 10.09 0.00 0.00 2.43
611 612 9.211485 CTTAAGACTTTAACTCCCATCGTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
612 613 9.729281 TTAAGACTTTAACTCCCATCGTTTTAT 57.271 29.630 0.00 0.00 0.00 1.40
613 614 8.631480 AAGACTTTAACTCCCATCGTTTTATT 57.369 30.769 0.00 0.00 0.00 1.40
614 615 9.729281 AAGACTTTAACTCCCATCGTTTTATTA 57.271 29.630 0.00 0.00 0.00 0.98
615 616 9.729281 AGACTTTAACTCCCATCGTTTTATTAA 57.271 29.630 0.00 0.00 0.00 1.40
616 617 9.764870 GACTTTAACTCCCATCGTTTTATTAAC 57.235 33.333 0.00 0.00 0.00 2.01
617 618 9.287373 ACTTTAACTCCCATCGTTTTATTAACA 57.713 29.630 0.00 0.00 0.00 2.41
620 621 6.753107 ACTCCCATCGTTTTATTAACAAGG 57.247 37.500 0.00 0.00 0.00 3.61
621 622 6.478129 ACTCCCATCGTTTTATTAACAAGGA 58.522 36.000 0.00 0.00 0.00 3.36
622 623 6.943718 ACTCCCATCGTTTTATTAACAAGGAA 59.056 34.615 0.00 0.00 0.00 3.36
623 624 7.614192 ACTCCCATCGTTTTATTAACAAGGAAT 59.386 33.333 0.00 0.00 0.00 3.01
624 625 8.356000 TCCCATCGTTTTATTAACAAGGAATT 57.644 30.769 0.00 0.00 0.00 2.17
625 626 8.247562 TCCCATCGTTTTATTAACAAGGAATTG 58.752 33.333 0.00 0.00 0.00 2.32
626 627 8.032451 CCCATCGTTTTATTAACAAGGAATTGT 58.968 33.333 0.00 0.00 36.59 2.71
627 628 9.418045 CCATCGTTTTATTAACAAGGAATTGTT 57.582 29.630 10.81 10.81 45.94 2.83
656 657 9.927081 AATGAGTTAATCTTAACCCTTCATCAT 57.073 29.630 12.59 9.82 43.03 2.45
677 678 9.664332 CATCATAACTTATATTCTCTTCCCTGG 57.336 37.037 0.00 0.00 0.00 4.45
678 679 8.798975 TCATAACTTATATTCTCTTCCCTGGT 57.201 34.615 0.00 0.00 0.00 4.00
679 680 8.871125 TCATAACTTATATTCTCTTCCCTGGTC 58.129 37.037 0.00 0.00 0.00 4.02
680 681 8.875168 CATAACTTATATTCTCTTCCCTGGTCT 58.125 37.037 0.00 0.00 0.00 3.85
682 683 8.485578 AACTTATATTCTCTTCCCTGGTCTAG 57.514 38.462 0.00 0.00 0.00 2.43
683 684 7.597327 ACTTATATTCTCTTCCCTGGTCTAGT 58.403 38.462 0.00 0.00 0.00 2.57
684 685 7.726738 ACTTATATTCTCTTCCCTGGTCTAGTC 59.273 40.741 0.00 0.00 0.00 2.59
685 686 2.830651 TCTCTTCCCTGGTCTAGTCC 57.169 55.000 0.00 0.00 0.00 3.85
686 687 1.288335 TCTCTTCCCTGGTCTAGTCCC 59.712 57.143 3.42 0.00 0.00 4.46
687 688 1.289530 CTCTTCCCTGGTCTAGTCCCT 59.710 57.143 3.42 0.00 0.00 4.20
688 689 1.288335 TCTTCCCTGGTCTAGTCCCTC 59.712 57.143 3.42 0.00 0.00 4.30
689 690 0.033405 TTCCCTGGTCTAGTCCCTCG 60.033 60.000 3.42 0.00 0.00 4.63
690 691 1.212934 TCCCTGGTCTAGTCCCTCGT 61.213 60.000 3.42 0.00 0.00 4.18
691 692 0.752376 CCCTGGTCTAGTCCCTCGTC 60.752 65.000 3.42 0.00 0.00 4.20
692 693 0.034380 CCTGGTCTAGTCCCTCGTCA 60.034 60.000 3.42 0.00 0.00 4.35
693 694 1.616187 CCTGGTCTAGTCCCTCGTCAA 60.616 57.143 3.42 0.00 0.00 3.18
694 695 1.473278 CTGGTCTAGTCCCTCGTCAAC 59.527 57.143 3.42 0.00 0.00 3.18
695 696 0.816373 GGTCTAGTCCCTCGTCAACC 59.184 60.000 0.00 0.00 0.00 3.77
696 697 1.542492 GTCTAGTCCCTCGTCAACCA 58.458 55.000 0.00 0.00 0.00 3.67
697 698 1.891150 GTCTAGTCCCTCGTCAACCAA 59.109 52.381 0.00 0.00 0.00 3.67
698 699 2.298163 GTCTAGTCCCTCGTCAACCAAA 59.702 50.000 0.00 0.00 0.00 3.28
699 700 2.298163 TCTAGTCCCTCGTCAACCAAAC 59.702 50.000 0.00 0.00 0.00 2.93
700 701 0.834612 AGTCCCTCGTCAACCAAACA 59.165 50.000 0.00 0.00 0.00 2.83
701 702 1.210967 AGTCCCTCGTCAACCAAACAA 59.789 47.619 0.00 0.00 0.00 2.83
702 703 1.602377 GTCCCTCGTCAACCAAACAAG 59.398 52.381 0.00 0.00 0.00 3.16
703 704 1.487142 TCCCTCGTCAACCAAACAAGA 59.513 47.619 0.00 0.00 0.00 3.02
704 705 2.092861 TCCCTCGTCAACCAAACAAGAA 60.093 45.455 0.00 0.00 0.00 2.52
705 706 2.685897 CCCTCGTCAACCAAACAAGAAA 59.314 45.455 0.00 0.00 0.00 2.52
706 707 3.129638 CCCTCGTCAACCAAACAAGAAAA 59.870 43.478 0.00 0.00 0.00 2.29
707 708 4.202111 CCCTCGTCAACCAAACAAGAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
708 709 5.009210 CCCTCGTCAACCAAACAAGAAAATA 59.991 40.000 0.00 0.00 0.00 1.40
709 710 5.912955 CCTCGTCAACCAAACAAGAAAATAC 59.087 40.000 0.00 0.00 0.00 1.89
710 711 6.438259 TCGTCAACCAAACAAGAAAATACA 57.562 33.333 0.00 0.00 0.00 2.29
711 712 6.853720 TCGTCAACCAAACAAGAAAATACAA 58.146 32.000 0.00 0.00 0.00 2.41
712 713 7.313646 TCGTCAACCAAACAAGAAAATACAAA 58.686 30.769 0.00 0.00 0.00 2.83
713 714 7.976734 TCGTCAACCAAACAAGAAAATACAAAT 59.023 29.630 0.00 0.00 0.00 2.32
714 715 8.599774 CGTCAACCAAACAAGAAAATACAAATT 58.400 29.630 0.00 0.00 0.00 1.82
715 716 9.914923 GTCAACCAAACAAGAAAATACAAATTC 57.085 29.630 0.00 0.00 0.00 2.17
716 717 9.883142 TCAACCAAACAAGAAAATACAAATTCT 57.117 25.926 0.00 0.00 37.49 2.40
750 751 9.585099 TTTCAAACATAATTCTTATCATGTGCC 57.415 29.630 0.00 0.00 32.15 5.01
751 752 8.291191 TCAAACATAATTCTTATCATGTGCCA 57.709 30.769 0.00 0.00 32.15 4.92
752 753 8.407832 TCAAACATAATTCTTATCATGTGCCAG 58.592 33.333 0.00 0.00 32.15 4.85
753 754 6.889301 ACATAATTCTTATCATGTGCCAGG 57.111 37.500 0.00 0.00 30.64 4.45
754 755 5.771666 ACATAATTCTTATCATGTGCCAGGG 59.228 40.000 0.00 0.00 30.64 4.45
755 756 4.524802 AATTCTTATCATGTGCCAGGGA 57.475 40.909 0.00 0.00 0.00 4.20
756 757 4.736611 ATTCTTATCATGTGCCAGGGAT 57.263 40.909 0.00 0.00 0.00 3.85
757 758 4.524802 TTCTTATCATGTGCCAGGGATT 57.475 40.909 0.00 0.00 0.00 3.01
758 759 5.645056 TTCTTATCATGTGCCAGGGATTA 57.355 39.130 0.00 0.00 0.00 1.75
759 760 5.233083 TCTTATCATGTGCCAGGGATTAG 57.767 43.478 0.00 0.00 0.00 1.73
760 761 2.965671 ATCATGTGCCAGGGATTAGG 57.034 50.000 0.00 0.00 0.00 2.69
761 762 0.846015 TCATGTGCCAGGGATTAGGG 59.154 55.000 0.00 0.00 0.00 3.53
762 763 0.846015 CATGTGCCAGGGATTAGGGA 59.154 55.000 0.00 0.00 0.00 4.20
763 764 1.426598 CATGTGCCAGGGATTAGGGAT 59.573 52.381 0.00 0.00 0.00 3.85
764 765 2.505672 TGTGCCAGGGATTAGGGATA 57.494 50.000 0.00 0.00 0.00 2.59
765 766 2.782922 TGTGCCAGGGATTAGGGATAA 58.217 47.619 0.00 0.00 0.00 1.75
766 767 3.127250 TGTGCCAGGGATTAGGGATAAA 58.873 45.455 0.00 0.00 0.00 1.40
767 768 3.529734 TGTGCCAGGGATTAGGGATAAAA 59.470 43.478 0.00 0.00 0.00 1.52
768 769 4.169856 TGTGCCAGGGATTAGGGATAAAAT 59.830 41.667 0.00 0.00 0.00 1.82
769 770 4.524328 GTGCCAGGGATTAGGGATAAAATG 59.476 45.833 0.00 0.00 0.00 2.32
770 771 4.418526 TGCCAGGGATTAGGGATAAAATGA 59.581 41.667 0.00 0.00 0.00 2.57
771 772 4.767409 GCCAGGGATTAGGGATAAAATGAC 59.233 45.833 0.00 0.00 0.00 3.06
772 773 5.458215 GCCAGGGATTAGGGATAAAATGACT 60.458 44.000 0.00 0.00 0.00 3.41
773 774 6.241645 CCAGGGATTAGGGATAAAATGACTC 58.758 44.000 0.00 0.00 0.00 3.36
774 775 6.183361 CCAGGGATTAGGGATAAAATGACTCA 60.183 42.308 0.00 0.00 0.00 3.41
775 776 7.465116 CAGGGATTAGGGATAAAATGACTCAT 58.535 38.462 0.00 0.00 0.00 2.90
776 777 7.609532 CAGGGATTAGGGATAAAATGACTCATC 59.390 40.741 0.00 0.00 0.00 2.92
777 778 6.887002 GGGATTAGGGATAAAATGACTCATCC 59.113 42.308 0.00 0.00 36.92 3.51
783 784 6.566197 GGATAAAATGACTCATCCCATGTC 57.434 41.667 0.00 0.00 32.38 3.06
784 785 6.302269 GGATAAAATGACTCATCCCATGTCT 58.698 40.000 0.00 0.00 32.38 3.41
785 786 7.453393 GGATAAAATGACTCATCCCATGTCTA 58.547 38.462 0.00 0.00 32.38 2.59
786 787 7.939039 GGATAAAATGACTCATCCCATGTCTAA 59.061 37.037 0.00 0.00 32.38 2.10
787 788 9.512588 GATAAAATGACTCATCCCATGTCTAAT 57.487 33.333 0.00 0.00 0.00 1.73
788 789 7.814264 AAAATGACTCATCCCATGTCTAATC 57.186 36.000 0.00 0.00 0.00 1.75
789 790 6.760440 AATGACTCATCCCATGTCTAATCT 57.240 37.500 0.00 0.00 0.00 2.40
790 791 5.798125 TGACTCATCCCATGTCTAATCTC 57.202 43.478 0.00 0.00 0.00 2.75
791 792 5.211201 TGACTCATCCCATGTCTAATCTCA 58.789 41.667 0.00 0.00 0.00 3.27
792 793 5.662657 TGACTCATCCCATGTCTAATCTCAA 59.337 40.000 0.00 0.00 0.00 3.02
793 794 6.328410 TGACTCATCCCATGTCTAATCTCAAT 59.672 38.462 0.00 0.00 0.00 2.57
794 795 7.510343 TGACTCATCCCATGTCTAATCTCAATA 59.490 37.037 0.00 0.00 0.00 1.90
795 796 7.675062 ACTCATCCCATGTCTAATCTCAATAC 58.325 38.462 0.00 0.00 0.00 1.89
796 797 7.290948 ACTCATCCCATGTCTAATCTCAATACA 59.709 37.037 0.00 0.00 0.00 2.29
797 798 8.033178 TCATCCCATGTCTAATCTCAATACAA 57.967 34.615 0.00 0.00 0.00 2.41
798 799 8.663167 TCATCCCATGTCTAATCTCAATACAAT 58.337 33.333 0.00 0.00 0.00 2.71
799 800 9.293404 CATCCCATGTCTAATCTCAATACAATT 57.707 33.333 0.00 0.00 0.00 2.32
800 801 8.908786 TCCCATGTCTAATCTCAATACAATTC 57.091 34.615 0.00 0.00 0.00 2.17
801 802 7.939039 TCCCATGTCTAATCTCAATACAATTCC 59.061 37.037 0.00 0.00 0.00 3.01
802 803 7.175641 CCCATGTCTAATCTCAATACAATTCCC 59.824 40.741 0.00 0.00 0.00 3.97
803 804 7.941238 CCATGTCTAATCTCAATACAATTCCCT 59.059 37.037 0.00 0.00 0.00 4.20
806 807 8.988060 TGTCTAATCTCAATACAATTCCCTACA 58.012 33.333 0.00 0.00 0.00 2.74
807 808 9.262358 GTCTAATCTCAATACAATTCCCTACAC 57.738 37.037 0.00 0.00 0.00 2.90
808 809 9.213777 TCTAATCTCAATACAATTCCCTACACT 57.786 33.333 0.00 0.00 0.00 3.55
812 813 9.614792 ATCTCAATACAATTCCCTACACTAAAC 57.385 33.333 0.00 0.00 0.00 2.01
813 814 8.822805 TCTCAATACAATTCCCTACACTAAACT 58.177 33.333 0.00 0.00 0.00 2.66
814 815 9.449719 CTCAATACAATTCCCTACACTAAACTT 57.550 33.333 0.00 0.00 0.00 2.66
815 816 9.444600 TCAATACAATTCCCTACACTAAACTTC 57.555 33.333 0.00 0.00 0.00 3.01
816 817 8.674607 CAATACAATTCCCTACACTAAACTTCC 58.325 37.037 0.00 0.00 0.00 3.46
817 818 6.195600 ACAATTCCCTACACTAAACTTCCA 57.804 37.500 0.00 0.00 0.00 3.53
818 819 6.790319 ACAATTCCCTACACTAAACTTCCAT 58.210 36.000 0.00 0.00 0.00 3.41
819 820 7.238710 ACAATTCCCTACACTAAACTTCCATT 58.761 34.615 0.00 0.00 0.00 3.16
820 821 7.393515 ACAATTCCCTACACTAAACTTCCATTC 59.606 37.037 0.00 0.00 0.00 2.67
821 822 5.431179 TCCCTACACTAAACTTCCATTCC 57.569 43.478 0.00 0.00 0.00 3.01
822 823 4.226620 TCCCTACACTAAACTTCCATTCCC 59.773 45.833 0.00 0.00 0.00 3.97
823 824 4.524053 CCTACACTAAACTTCCATTCCCC 58.476 47.826 0.00 0.00 0.00 4.81
824 825 4.227527 CCTACACTAAACTTCCATTCCCCT 59.772 45.833 0.00 0.00 0.00 4.79
825 826 4.741928 ACACTAAACTTCCATTCCCCTT 57.258 40.909 0.00 0.00 0.00 3.95
826 827 4.663334 ACACTAAACTTCCATTCCCCTTC 58.337 43.478 0.00 0.00 0.00 3.46
827 828 4.017126 CACTAAACTTCCATTCCCCTTCC 58.983 47.826 0.00 0.00 0.00 3.46
828 829 3.923425 ACTAAACTTCCATTCCCCTTCCT 59.077 43.478 0.00 0.00 0.00 3.36
829 830 5.045140 CACTAAACTTCCATTCCCCTTCCTA 60.045 44.000 0.00 0.00 0.00 2.94
830 831 5.554350 ACTAAACTTCCATTCCCCTTCCTAA 59.446 40.000 0.00 0.00 0.00 2.69
831 832 5.348259 AAACTTCCATTCCCCTTCCTAAA 57.652 39.130 0.00 0.00 0.00 1.85
832 833 5.552430 AACTTCCATTCCCCTTCCTAAAT 57.448 39.130 0.00 0.00 0.00 1.40
833 834 6.668133 AACTTCCATTCCCCTTCCTAAATA 57.332 37.500 0.00 0.00 0.00 1.40
834 835 6.865651 ACTTCCATTCCCCTTCCTAAATAT 57.134 37.500 0.00 0.00 0.00 1.28
835 836 7.239080 ACTTCCATTCCCCTTCCTAAATATT 57.761 36.000 0.00 0.00 0.00 1.28
836 837 7.069344 ACTTCCATTCCCCTTCCTAAATATTG 58.931 38.462 0.00 0.00 0.00 1.90
837 838 5.393866 TCCATTCCCCTTCCTAAATATTGC 58.606 41.667 0.00 0.00 0.00 3.56
838 839 4.528206 CCATTCCCCTTCCTAAATATTGCC 59.472 45.833 0.00 0.00 0.00 4.52
839 840 4.890499 TTCCCCTTCCTAAATATTGCCA 57.110 40.909 0.00 0.00 0.00 4.92
840 841 4.890499 TCCCCTTCCTAAATATTGCCAA 57.110 40.909 0.00 0.00 0.00 4.52
841 842 5.213868 TCCCCTTCCTAAATATTGCCAAA 57.786 39.130 0.00 0.00 0.00 3.28
842 843 4.959839 TCCCCTTCCTAAATATTGCCAAAC 59.040 41.667 0.00 0.00 0.00 2.93
843 844 4.202111 CCCCTTCCTAAATATTGCCAAACG 60.202 45.833 0.00 0.00 0.00 3.60
844 845 4.359706 CCTTCCTAAATATTGCCAAACGC 58.640 43.478 0.00 0.00 38.31 4.84
845 846 3.684103 TCCTAAATATTGCCAAACGCG 57.316 42.857 3.53 3.53 42.08 6.01
846 847 2.116366 CCTAAATATTGCCAAACGCGC 58.884 47.619 5.73 0.00 42.08 6.86
847 848 2.223479 CCTAAATATTGCCAAACGCGCT 60.223 45.455 5.73 0.00 42.08 5.92
848 849 1.627879 AAATATTGCCAAACGCGCTG 58.372 45.000 5.73 3.42 42.08 5.18
849 850 0.525761 AATATTGCCAAACGCGCTGT 59.474 45.000 5.73 1.79 42.08 4.40
850 851 0.098728 ATATTGCCAAACGCGCTGTC 59.901 50.000 5.73 0.00 42.08 3.51
851 852 1.231296 TATTGCCAAACGCGCTGTCA 61.231 50.000 5.73 0.00 42.08 3.58
852 853 1.865788 ATTGCCAAACGCGCTGTCAT 61.866 50.000 5.73 0.00 42.08 3.06
853 854 2.069465 TTGCCAAACGCGCTGTCATT 62.069 50.000 5.73 0.00 42.08 2.57
854 855 1.371635 GCCAAACGCGCTGTCATTT 60.372 52.632 5.73 0.00 0.00 2.32
855 856 1.608093 GCCAAACGCGCTGTCATTTG 61.608 55.000 5.73 8.40 32.89 2.32
856 857 1.003262 CCAAACGCGCTGTCATTTGG 61.003 55.000 18.45 18.45 43.69 3.28
857 858 1.003262 CAAACGCGCTGTCATTTGGG 61.003 55.000 5.73 0.00 0.00 4.12
987 1063 4.557605 GCATGCCGACGCCATTGG 62.558 66.667 6.36 0.00 34.40 3.16
1160 1236 4.400961 GCCCTCCACGCTGCTCTT 62.401 66.667 0.00 0.00 0.00 2.85
1196 1272 3.382832 CCTCTCCTCCAACGCCGT 61.383 66.667 0.00 0.00 0.00 5.68
1270 1346 1.546961 CTCCTACAACACCCTCGTCT 58.453 55.000 0.00 0.00 0.00 4.18
1336 1412 3.615509 TTCGACCGAATGCCCCACC 62.616 63.158 0.18 0.00 0.00 4.61
1377 1453 1.280142 CATCGTCTCCGCCTACTCG 59.720 63.158 0.00 0.00 0.00 4.18
1435 1511 3.883549 GGATGCAGGAGGAGCCCC 61.884 72.222 0.00 0.00 35.34 5.80
1463 1539 1.571460 GCGCTGACAACCAGTTCAG 59.429 57.895 0.00 0.00 44.71 3.02
1617 1693 4.572571 AAGTGCGGCCGGTTGGAA 62.573 61.111 29.38 0.00 37.49 3.53
1796 1872 3.056328 GGGGGTTCTGCGTGCTTC 61.056 66.667 0.00 0.00 0.00 3.86
1958 2034 1.497309 TTCGAGGGGATGCCAAAGGT 61.497 55.000 5.30 0.00 0.00 3.50
1998 2074 1.337541 GCGATGATCTCTGGCTATGCA 60.338 52.381 0.00 0.00 0.00 3.96
2097 2173 1.581934 TTGTTGGTGTTCTCTCTGCG 58.418 50.000 0.00 0.00 0.00 5.18
2119 2195 1.297689 GCTCATGCTGGTCTGGTCA 59.702 57.895 0.00 0.00 36.03 4.02
2128 2204 2.486548 GCTGGTCTGGTCAACAAAGGTA 60.487 50.000 0.00 0.00 0.00 3.08
2168 2244 6.950842 TGATAGAGGATAAGTATGGCATTGG 58.049 40.000 4.78 0.00 0.00 3.16
2176 2252 1.102978 GTATGGCATTGGACACACCC 58.897 55.000 4.78 0.00 32.32 4.61
2217 2293 3.666784 CGATCTACTCAGCCGATCG 57.333 57.895 8.51 8.51 46.76 3.69
2280 2356 4.802918 GCTGTCAAGCCTAACAAGTTCCTA 60.803 45.833 0.00 0.00 44.22 2.94
2376 2452 7.141100 GTTCGAAATAGAACCTGAAAATCCA 57.859 36.000 0.00 0.00 43.33 3.41
2394 2470 2.353889 TCCAGCGACGTATGTTACTCTC 59.646 50.000 0.00 0.00 0.00 3.20
2415 2491 6.163476 TCTCGCTAATATTTATGCATCGGTT 58.837 36.000 0.19 0.00 0.00 4.44
2634 2710 0.796312 CGGACACCGGATTTGTTCTG 59.204 55.000 9.46 0.00 44.15 3.02
2682 2758 2.715046 CATGACATTGGCTACCACAGT 58.285 47.619 0.00 0.00 30.78 3.55
2803 2879 7.993821 GCTATTAAGCTCATATCGCAGATTA 57.006 36.000 0.00 0.00 45.85 1.75
2807 2883 4.090138 AGCTCATATCGCAGATTACTCG 57.910 45.455 0.00 0.00 45.12 4.18
2877 2953 2.519013 GGGGTTTGTTCTTGCAGAGAT 58.481 47.619 0.00 0.00 33.49 2.75
2907 2983 6.600822 GGTAATCTATGCTGCATATGTGGATT 59.399 38.462 25.20 25.20 29.36 3.01
2968 3046 1.725641 TGGCTAAAGTCGATGTGCAG 58.274 50.000 0.00 0.00 0.00 4.41
2995 3073 1.725641 TGATTTAGCAGCTGGTGTCG 58.274 50.000 28.10 0.00 0.00 4.35
2996 3074 1.001974 TGATTTAGCAGCTGGTGTCGT 59.998 47.619 28.10 11.25 0.00 4.34
3003 3081 0.807667 CAGCTGGTGTCGTATGAGGC 60.808 60.000 5.57 0.00 0.00 4.70
3008 3086 3.384668 CTGGTGTCGTATGAGGCTATTG 58.615 50.000 0.00 0.00 0.00 1.90
3009 3087 2.135933 GGTGTCGTATGAGGCTATTGC 58.864 52.381 0.00 0.00 38.76 3.56
3010 3088 2.483013 GGTGTCGTATGAGGCTATTGCA 60.483 50.000 0.66 0.00 41.91 4.08
3011 3089 3.194861 GTGTCGTATGAGGCTATTGCAA 58.805 45.455 0.00 0.00 41.91 4.08
3012 3090 3.809832 GTGTCGTATGAGGCTATTGCAAT 59.190 43.478 17.56 17.56 41.91 3.56
3027 3228 1.093159 GCAATGCCAGACTCCAAGAG 58.907 55.000 0.00 0.00 35.52 2.85
3028 3229 1.339438 GCAATGCCAGACTCCAAGAGA 60.339 52.381 0.00 0.00 33.32 3.10
3029 3230 2.683152 GCAATGCCAGACTCCAAGAGAT 60.683 50.000 0.00 0.00 33.32 2.75
3030 3231 3.618351 CAATGCCAGACTCCAAGAGATT 58.382 45.455 0.00 0.00 33.32 2.40
3031 3232 2.775911 TGCCAGACTCCAAGAGATTG 57.224 50.000 0.00 0.00 33.32 2.67
3068 3269 4.279420 GCTATTAGGAAAATGGCCTCCAAG 59.721 45.833 11.14 4.39 36.95 3.61
3081 3282 2.814097 GCCTCCAAGTTTTGTAGCTCCA 60.814 50.000 0.00 0.00 0.00 3.86
3082 3283 3.077359 CCTCCAAGTTTTGTAGCTCCAG 58.923 50.000 0.00 0.00 0.00 3.86
3102 3303 5.768164 TCCAGTACCTTGGACAATTTTTCTC 59.232 40.000 0.00 0.00 42.24 2.87
3219 3423 6.888105 AGAAATGATCAACCAACAAAAACCT 58.112 32.000 0.00 0.00 0.00 3.50
3249 3453 5.540911 TGTTTGGCAAATCAGAAGGAAATC 58.459 37.500 16.74 0.00 0.00 2.17
3321 3525 3.053019 TCCCATATGCAATGTTTCCCTCA 60.053 43.478 0.00 0.00 0.00 3.86
3367 3580 8.720562 CAATTATCAGTACATCAGTGAACAACA 58.279 33.333 0.00 0.00 40.04 3.33
3433 3646 3.955551 ACAAAACCGAACCACCAAAGTAT 59.044 39.130 0.00 0.00 0.00 2.12
3497 3710 7.598278 TGTAAGTCTTTTCTTGAAAACTTGCA 58.402 30.769 18.41 18.41 37.87 4.08
3707 3920 3.129988 GGTCAAGATGGCCTTCATTCAAG 59.870 47.826 19.98 4.08 39.55 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.916654 CAACAACACATAGTTTGTAAACAACAA 58.083 29.630 9.85 0.00 46.41 2.83
7 8 8.297426 TCAACAACACATAGTTTGTAAACAACA 58.703 29.630 9.85 0.00 41.30 3.33
8 9 8.676454 TCAACAACACATAGTTTGTAAACAAC 57.324 30.769 9.85 0.00 41.30 3.32
9 10 9.130312 GTTCAACAACACATAGTTTGTAAACAA 57.870 29.630 9.85 0.00 38.74 2.83
10 11 8.516234 AGTTCAACAACACATAGTTTGTAAACA 58.484 29.630 9.85 0.00 38.74 2.83
11 12 8.794406 CAGTTCAACAACACATAGTTTGTAAAC 58.206 33.333 0.00 0.00 38.74 2.01
12 13 8.516234 ACAGTTCAACAACACATAGTTTGTAAA 58.484 29.630 0.00 0.00 38.74 2.01
13 14 8.046294 ACAGTTCAACAACACATAGTTTGTAA 57.954 30.769 0.00 0.00 38.74 2.41
14 15 7.618502 ACAGTTCAACAACACATAGTTTGTA 57.381 32.000 0.00 0.00 38.74 2.41
15 16 6.509418 ACAGTTCAACAACACATAGTTTGT 57.491 33.333 0.00 0.00 38.74 2.83
16 17 6.253298 CCAACAGTTCAACAACACATAGTTTG 59.747 38.462 0.00 0.00 38.74 2.93
17 18 6.329496 CCAACAGTTCAACAACACATAGTTT 58.671 36.000 0.00 0.00 38.74 2.66
18 19 5.678616 GCCAACAGTTCAACAACACATAGTT 60.679 40.000 0.00 0.00 42.42 2.24
19 20 4.202010 GCCAACAGTTCAACAACACATAGT 60.202 41.667 0.00 0.00 34.60 2.12
20 21 4.290155 GCCAACAGTTCAACAACACATAG 58.710 43.478 0.00 0.00 34.60 2.23
35 36 2.095314 TGCAACACATTATCGCCAACAG 60.095 45.455 0.00 0.00 0.00 3.16
37 38 2.250188 GTGCAACACATTATCGCCAAC 58.750 47.619 0.00 0.00 36.32 3.77
72 73 1.828595 TGCTTTGCATCATTCCAGCAT 59.171 42.857 0.00 0.00 38.19 3.79
106 107 2.638480 TCTGTACAGTTGGCAAGCTT 57.362 45.000 21.99 0.00 0.00 3.74
115 116 7.986085 AACAATAGCATTCTTCTGTACAGTT 57.014 32.000 21.99 2.68 0.00 3.16
150 151 1.042229 ACTTGATGCCTTGCTTTGCA 58.958 45.000 0.00 0.00 42.52 4.08
151 152 2.064014 GAACTTGATGCCTTGCTTTGC 58.936 47.619 0.00 0.00 0.00 3.68
152 153 3.374220 TGAACTTGATGCCTTGCTTTG 57.626 42.857 0.00 0.00 0.00 2.77
153 154 3.385755 ACTTGAACTTGATGCCTTGCTTT 59.614 39.130 0.00 0.00 0.00 3.51
154 155 2.961062 ACTTGAACTTGATGCCTTGCTT 59.039 40.909 0.00 0.00 0.00 3.91
155 156 2.590821 ACTTGAACTTGATGCCTTGCT 58.409 42.857 0.00 0.00 0.00 3.91
156 157 3.005155 AGAACTTGAACTTGATGCCTTGC 59.995 43.478 0.00 0.00 0.00 4.01
157 158 4.843220 AGAACTTGAACTTGATGCCTTG 57.157 40.909 0.00 0.00 0.00 3.61
158 159 4.457257 GCTAGAACTTGAACTTGATGCCTT 59.543 41.667 0.00 0.00 0.00 4.35
159 160 4.006319 GCTAGAACTTGAACTTGATGCCT 58.994 43.478 0.00 0.00 0.00 4.75
160 161 4.006319 AGCTAGAACTTGAACTTGATGCC 58.994 43.478 0.00 0.00 0.00 4.40
161 162 5.619625 AAGCTAGAACTTGAACTTGATGC 57.380 39.130 0.00 0.00 0.00 3.91
162 163 7.230222 CGTTAAGCTAGAACTTGAACTTGATG 58.770 38.462 9.15 0.00 0.00 3.07
163 164 6.128526 GCGTTAAGCTAGAACTTGAACTTGAT 60.129 38.462 9.15 0.00 44.04 2.57
164 165 5.176958 GCGTTAAGCTAGAACTTGAACTTGA 59.823 40.000 9.15 0.00 44.04 3.02
165 166 5.374898 GCGTTAAGCTAGAACTTGAACTTG 58.625 41.667 9.15 0.00 44.04 3.16
166 167 5.593183 GCGTTAAGCTAGAACTTGAACTT 57.407 39.130 9.15 0.00 44.04 2.66
255 256 6.574350 TGATTTTCAACGGTTTTTGGTACAT 58.426 32.000 0.00 0.00 39.30 2.29
286 287 2.884639 CTCCCTCGGTTTGAAAATGTGT 59.115 45.455 0.00 0.00 0.00 3.72
319 320 6.043243 CACATATGGTAGTTATCAGGGTCCTT 59.957 42.308 7.80 0.00 0.00 3.36
333 334 2.595124 TCGTGCCACACATATGGTAG 57.405 50.000 7.80 0.00 42.28 3.18
335 336 1.737838 CTTCGTGCCACACATATGGT 58.262 50.000 7.80 0.00 42.28 3.55
337 338 1.085893 TGCTTCGTGCCACACATATG 58.914 50.000 0.00 0.00 42.00 1.78
339 340 1.819928 ATTGCTTCGTGCCACACATA 58.180 45.000 0.00 0.00 42.00 2.29
341 342 0.743688 AAATTGCTTCGTGCCACACA 59.256 45.000 0.00 0.00 42.00 3.72
377 378 4.573607 CCTCGGGTAACTAAACTTATTGCC 59.426 45.833 0.00 0.00 0.00 4.52
378 379 5.422145 TCCTCGGGTAACTAAACTTATTGC 58.578 41.667 0.00 0.00 0.00 3.56
379 380 7.224167 GTCATCCTCGGGTAACTAAACTTATTG 59.776 40.741 0.00 0.00 0.00 1.90
380 381 7.093201 TGTCATCCTCGGGTAACTAAACTTATT 60.093 37.037 0.00 0.00 0.00 1.40
382 383 5.716228 TGTCATCCTCGGGTAACTAAACTTA 59.284 40.000 0.00 0.00 0.00 2.24
436 437 4.460263 ACTGAAACTTGCCATCTACAACA 58.540 39.130 0.00 0.00 0.00 3.33
437 438 5.438761 AACTGAAACTTGCCATCTACAAC 57.561 39.130 0.00 0.00 0.00 3.32
441 442 6.959639 AAAGAAACTGAAACTTGCCATCTA 57.040 33.333 0.00 0.00 0.00 1.98
443 444 6.908870 AAAAAGAAACTGAAACTTGCCATC 57.091 33.333 0.00 0.00 0.00 3.51
476 477 5.975693 ACTCTAAAATTGCCATCCGAAAA 57.024 34.783 0.00 0.00 0.00 2.29
496 497 7.652554 ACCATTTTAATTCCCATCCTCTAACT 58.347 34.615 0.00 0.00 0.00 2.24
497 498 7.898014 ACCATTTTAATTCCCATCCTCTAAC 57.102 36.000 0.00 0.00 0.00 2.34
498 499 7.717875 CGTACCATTTTAATTCCCATCCTCTAA 59.282 37.037 0.00 0.00 0.00 2.10
501 502 6.059484 TCGTACCATTTTAATTCCCATCCTC 58.941 40.000 0.00 0.00 0.00 3.71
503 504 6.017357 GTCTCGTACCATTTTAATTCCCATCC 60.017 42.308 0.00 0.00 0.00 3.51
504 505 6.766467 AGTCTCGTACCATTTTAATTCCCATC 59.234 38.462 0.00 0.00 0.00 3.51
505 506 6.659824 AGTCTCGTACCATTTTAATTCCCAT 58.340 36.000 0.00 0.00 0.00 4.00
506 507 6.057321 AGTCTCGTACCATTTTAATTCCCA 57.943 37.500 0.00 0.00 0.00 4.37
507 508 6.596497 TGAAGTCTCGTACCATTTTAATTCCC 59.404 38.462 0.00 0.00 0.00 3.97
508 509 7.605410 TGAAGTCTCGTACCATTTTAATTCC 57.395 36.000 0.00 0.00 0.00 3.01
512 513 8.842358 AGATTTGAAGTCTCGTACCATTTTAA 57.158 30.769 0.00 0.00 0.00 1.52
514 515 9.449719 AATAGATTTGAAGTCTCGTACCATTTT 57.550 29.630 0.00 0.00 0.00 1.82
515 516 8.883731 CAATAGATTTGAAGTCTCGTACCATTT 58.116 33.333 0.00 0.00 0.00 2.32
516 517 8.041323 ACAATAGATTTGAAGTCTCGTACCATT 58.959 33.333 0.00 0.00 0.00 3.16
517 518 7.556844 ACAATAGATTTGAAGTCTCGTACCAT 58.443 34.615 0.00 0.00 0.00 3.55
518 519 6.931838 ACAATAGATTTGAAGTCTCGTACCA 58.068 36.000 0.00 0.00 0.00 3.25
519 520 7.829378 AACAATAGATTTGAAGTCTCGTACC 57.171 36.000 0.00 0.00 0.00 3.34
522 523 6.710744 ACCAAACAATAGATTTGAAGTCTCGT 59.289 34.615 0.00 0.00 39.01 4.18
523 524 7.133891 ACCAAACAATAGATTTGAAGTCTCG 57.866 36.000 0.00 0.00 39.01 4.04
525 526 9.014297 CCTAACCAAACAATAGATTTGAAGTCT 57.986 33.333 0.00 0.00 39.01 3.24
528 529 7.396055 TCCCCTAACCAAACAATAGATTTGAAG 59.604 37.037 0.00 0.00 39.01 3.02
530 531 6.795590 TCCCCTAACCAAACAATAGATTTGA 58.204 36.000 0.00 0.00 39.01 2.69
532 533 8.004801 CCTATCCCCTAACCAAACAATAGATTT 58.995 37.037 0.00 0.00 0.00 2.17
534 535 6.855061 TCCTATCCCCTAACCAAACAATAGAT 59.145 38.462 0.00 0.00 0.00 1.98
536 537 6.509523 TCCTATCCCCTAACCAAACAATAG 57.490 41.667 0.00 0.00 0.00 1.73
538 539 5.806955 TTCCTATCCCCTAACCAAACAAT 57.193 39.130 0.00 0.00 0.00 2.71
540 541 5.806955 ATTTCCTATCCCCTAACCAAACA 57.193 39.130 0.00 0.00 0.00 2.83
545 546 9.529823 CCTTTATAAATTTCCTATCCCCTAACC 57.470 37.037 0.00 0.00 0.00 2.85
555 556 9.280174 CGTGCCTATTCCTTTATAAATTTCCTA 57.720 33.333 0.00 0.00 0.00 2.94
556 557 7.778382 ACGTGCCTATTCCTTTATAAATTTCCT 59.222 33.333 0.00 0.00 0.00 3.36
557 558 7.860872 CACGTGCCTATTCCTTTATAAATTTCC 59.139 37.037 0.82 0.00 0.00 3.13
558 559 8.617809 TCACGTGCCTATTCCTTTATAAATTTC 58.382 33.333 11.67 0.00 0.00 2.17
559 560 8.403236 GTCACGTGCCTATTCCTTTATAAATTT 58.597 33.333 11.67 0.00 0.00 1.82
560 561 7.773690 AGTCACGTGCCTATTCCTTTATAAATT 59.226 33.333 11.67 0.00 0.00 1.82
561 562 7.280356 AGTCACGTGCCTATTCCTTTATAAAT 58.720 34.615 11.67 0.00 0.00 1.40
562 563 6.646267 AGTCACGTGCCTATTCCTTTATAAA 58.354 36.000 11.67 0.00 0.00 1.40
563 564 6.229936 AGTCACGTGCCTATTCCTTTATAA 57.770 37.500 11.67 0.00 0.00 0.98
564 565 5.864418 AGTCACGTGCCTATTCCTTTATA 57.136 39.130 11.67 0.00 0.00 0.98
565 566 4.755266 AGTCACGTGCCTATTCCTTTAT 57.245 40.909 11.67 0.00 0.00 1.40
566 567 4.546829 AAGTCACGTGCCTATTCCTTTA 57.453 40.909 11.67 0.00 0.00 1.85
567 568 3.418684 AAGTCACGTGCCTATTCCTTT 57.581 42.857 11.67 0.00 0.00 3.11
568 569 4.222145 TCTTAAGTCACGTGCCTATTCCTT 59.778 41.667 11.67 6.31 0.00 3.36
569 570 3.767673 TCTTAAGTCACGTGCCTATTCCT 59.232 43.478 11.67 0.00 0.00 3.36
570 571 3.864003 GTCTTAAGTCACGTGCCTATTCC 59.136 47.826 11.67 0.00 0.00 3.01
571 572 4.745649 AGTCTTAAGTCACGTGCCTATTC 58.254 43.478 11.67 0.00 0.00 1.75
572 573 4.803098 AGTCTTAAGTCACGTGCCTATT 57.197 40.909 11.67 5.21 0.00 1.73
573 574 4.803098 AAGTCTTAAGTCACGTGCCTAT 57.197 40.909 11.67 0.00 0.00 2.57
574 575 4.595762 AAAGTCTTAAGTCACGTGCCTA 57.404 40.909 11.67 0.00 0.00 3.93
575 576 3.470645 AAAGTCTTAAGTCACGTGCCT 57.529 42.857 11.67 0.28 0.00 4.75
576 577 4.748600 AGTTAAAGTCTTAAGTCACGTGCC 59.251 41.667 11.67 0.00 0.00 5.01
577 578 5.107568 GGAGTTAAAGTCTTAAGTCACGTGC 60.108 44.000 11.67 6.26 44.37 5.34
578 579 5.404667 GGGAGTTAAAGTCTTAAGTCACGTG 59.595 44.000 9.94 9.94 44.37 4.49
579 580 5.536260 GGGAGTTAAAGTCTTAAGTCACGT 58.464 41.667 1.63 0.00 44.37 4.49
581 582 6.310711 CGATGGGAGTTAAAGTCTTAAGTCAC 59.689 42.308 1.63 9.97 45.47 3.67
582 583 6.014840 ACGATGGGAGTTAAAGTCTTAAGTCA 60.015 38.462 1.63 0.00 44.37 3.41
583 584 6.396450 ACGATGGGAGTTAAAGTCTTAAGTC 58.604 40.000 1.63 0.00 42.89 3.01
584 585 6.356186 ACGATGGGAGTTAAAGTCTTAAGT 57.644 37.500 1.63 0.00 34.06 2.24
585 586 7.668525 AAACGATGGGAGTTAAAGTCTTAAG 57.331 36.000 0.00 0.00 0.00 1.85
586 587 9.729281 ATAAAACGATGGGAGTTAAAGTCTTAA 57.271 29.630 0.00 0.00 0.00 1.85
587 588 9.729281 AATAAAACGATGGGAGTTAAAGTCTTA 57.271 29.630 0.00 0.00 0.00 2.10
588 589 8.631480 AATAAAACGATGGGAGTTAAAGTCTT 57.369 30.769 0.00 0.00 0.00 3.01
589 590 9.729281 TTAATAAAACGATGGGAGTTAAAGTCT 57.271 29.630 0.00 0.00 0.00 3.24
590 591 9.764870 GTTAATAAAACGATGGGAGTTAAAGTC 57.235 33.333 0.00 0.00 0.00 3.01
591 592 9.287373 TGTTAATAAAACGATGGGAGTTAAAGT 57.713 29.630 0.00 0.00 0.00 2.66
594 595 8.732531 CCTTGTTAATAAAACGATGGGAGTTAA 58.267 33.333 0.00 0.00 0.00 2.01
595 596 8.102047 TCCTTGTTAATAAAACGATGGGAGTTA 58.898 33.333 0.00 0.00 0.00 2.24
596 597 6.943718 TCCTTGTTAATAAAACGATGGGAGTT 59.056 34.615 0.00 0.00 0.00 3.01
597 598 6.478129 TCCTTGTTAATAAAACGATGGGAGT 58.522 36.000 0.00 0.00 0.00 3.85
598 599 6.995511 TCCTTGTTAATAAAACGATGGGAG 57.004 37.500 0.00 0.00 0.00 4.30
599 600 7.948034 ATTCCTTGTTAATAAAACGATGGGA 57.052 32.000 0.00 0.00 0.00 4.37
600 601 8.032451 ACAATTCCTTGTTAATAAAACGATGGG 58.968 33.333 0.00 0.00 43.05 4.00
601 602 8.980143 ACAATTCCTTGTTAATAAAACGATGG 57.020 30.769 0.00 0.00 43.05 3.51
630 631 9.927081 ATGATGAAGGGTTAAGATTAACTCATT 57.073 29.630 15.75 9.65 44.63 2.57
651 652 9.664332 CCAGGGAAGAGAATATAAGTTATGATG 57.336 37.037 5.61 0.00 0.00 3.07
652 653 9.398921 ACCAGGGAAGAGAATATAAGTTATGAT 57.601 33.333 5.61 0.00 0.00 2.45
653 654 8.798975 ACCAGGGAAGAGAATATAAGTTATGA 57.201 34.615 5.61 0.00 0.00 2.15
654 655 8.875168 AGACCAGGGAAGAGAATATAAGTTATG 58.125 37.037 5.61 0.00 0.00 1.90
656 657 9.589461 CTAGACCAGGGAAGAGAATATAAGTTA 57.411 37.037 0.00 0.00 0.00 2.24
657 658 8.068733 ACTAGACCAGGGAAGAGAATATAAGTT 58.931 37.037 0.00 0.00 0.00 2.66
658 659 7.597327 ACTAGACCAGGGAAGAGAATATAAGT 58.403 38.462 0.00 0.00 0.00 2.24
659 660 7.177744 GGACTAGACCAGGGAAGAGAATATAAG 59.822 44.444 6.35 0.00 0.00 1.73
660 661 7.011382 GGACTAGACCAGGGAAGAGAATATAA 58.989 42.308 6.35 0.00 0.00 0.98
661 662 6.468945 GGGACTAGACCAGGGAAGAGAATATA 60.469 46.154 13.36 0.00 0.00 0.86
662 663 5.399113 GGACTAGACCAGGGAAGAGAATAT 58.601 45.833 6.35 0.00 0.00 1.28
663 664 4.387664 GGGACTAGACCAGGGAAGAGAATA 60.388 50.000 13.36 0.00 0.00 1.75
664 665 3.631346 GGGACTAGACCAGGGAAGAGAAT 60.631 52.174 13.36 0.00 0.00 2.40
665 666 2.292323 GGGACTAGACCAGGGAAGAGAA 60.292 54.545 13.36 0.00 0.00 2.87
666 667 1.288335 GGGACTAGACCAGGGAAGAGA 59.712 57.143 13.36 0.00 0.00 3.10
667 668 1.289530 AGGGACTAGACCAGGGAAGAG 59.710 57.143 13.36 0.00 36.02 2.85
668 669 1.288335 GAGGGACTAGACCAGGGAAGA 59.712 57.143 13.36 0.00 41.55 2.87
669 670 1.783071 GAGGGACTAGACCAGGGAAG 58.217 60.000 13.36 0.00 41.55 3.46
670 671 0.033405 CGAGGGACTAGACCAGGGAA 60.033 60.000 13.36 0.00 41.55 3.97
671 672 1.212934 ACGAGGGACTAGACCAGGGA 61.213 60.000 13.36 0.00 41.55 4.20
672 673 0.752376 GACGAGGGACTAGACCAGGG 60.752 65.000 13.36 3.73 41.55 4.45
673 674 0.034380 TGACGAGGGACTAGACCAGG 60.034 60.000 13.36 4.06 41.55 4.45
674 675 1.473278 GTTGACGAGGGACTAGACCAG 59.527 57.143 13.36 6.36 41.55 4.00
675 676 1.542492 GTTGACGAGGGACTAGACCA 58.458 55.000 13.36 0.00 41.55 4.02
676 677 0.816373 GGTTGACGAGGGACTAGACC 59.184 60.000 2.23 2.23 41.55 3.85
677 678 1.542492 TGGTTGACGAGGGACTAGAC 58.458 55.000 0.00 0.00 41.55 2.59
678 679 2.297698 TTGGTTGACGAGGGACTAGA 57.702 50.000 0.00 0.00 41.55 2.43
679 680 2.036733 TGTTTGGTTGACGAGGGACTAG 59.963 50.000 0.00 0.00 41.55 2.57
680 681 2.040939 TGTTTGGTTGACGAGGGACTA 58.959 47.619 0.00 0.00 41.55 2.59
682 683 1.602377 CTTGTTTGGTTGACGAGGGAC 59.398 52.381 0.00 0.00 0.00 4.46
683 684 1.487142 TCTTGTTTGGTTGACGAGGGA 59.513 47.619 0.00 0.00 0.00 4.20
684 685 1.961793 TCTTGTTTGGTTGACGAGGG 58.038 50.000 0.00 0.00 0.00 4.30
685 686 4.364415 TTTTCTTGTTTGGTTGACGAGG 57.636 40.909 0.00 0.00 0.00 4.63
686 687 6.491394 TGTATTTTCTTGTTTGGTTGACGAG 58.509 36.000 0.00 0.00 0.00 4.18
687 688 6.438259 TGTATTTTCTTGTTTGGTTGACGA 57.562 33.333 0.00 0.00 0.00 4.20
688 689 7.513190 TTTGTATTTTCTTGTTTGGTTGACG 57.487 32.000 0.00 0.00 0.00 4.35
689 690 9.914923 GAATTTGTATTTTCTTGTTTGGTTGAC 57.085 29.630 0.00 0.00 0.00 3.18
690 691 9.883142 AGAATTTGTATTTTCTTGTTTGGTTGA 57.117 25.926 0.00 0.00 0.00 3.18
724 725 9.585099 GGCACATGATAAGAATTATGTTTGAAA 57.415 29.630 0.00 0.00 42.35 2.69
725 726 8.747471 TGGCACATGATAAGAATTATGTTTGAA 58.253 29.630 0.00 0.00 42.35 2.69
726 727 8.291191 TGGCACATGATAAGAATTATGTTTGA 57.709 30.769 0.00 0.00 42.35 2.69
727 728 7.650504 CCTGGCACATGATAAGAATTATGTTTG 59.349 37.037 0.00 0.00 39.57 2.93
728 729 7.201938 CCCTGGCACATGATAAGAATTATGTTT 60.202 37.037 0.00 0.00 39.57 2.83
729 730 6.266103 CCCTGGCACATGATAAGAATTATGTT 59.734 38.462 0.00 0.00 39.57 2.71
730 731 5.771666 CCCTGGCACATGATAAGAATTATGT 59.228 40.000 0.00 0.00 41.59 2.29
731 732 6.005823 TCCCTGGCACATGATAAGAATTATG 58.994 40.000 0.00 0.00 38.82 1.90
732 733 6.204852 TCCCTGGCACATGATAAGAATTAT 57.795 37.500 0.00 0.00 40.92 1.28
733 734 5.645056 TCCCTGGCACATGATAAGAATTA 57.355 39.130 0.00 0.00 38.20 1.40
734 735 4.524802 TCCCTGGCACATGATAAGAATT 57.475 40.909 0.00 0.00 38.20 2.17
735 736 4.736611 ATCCCTGGCACATGATAAGAAT 57.263 40.909 0.00 0.00 38.20 2.40
736 737 4.524802 AATCCCTGGCACATGATAAGAA 57.475 40.909 0.00 0.00 38.20 2.52
737 738 4.042062 CCTAATCCCTGGCACATGATAAGA 59.958 45.833 0.00 0.00 38.20 2.10
738 739 4.330250 CCTAATCCCTGGCACATGATAAG 58.670 47.826 0.00 0.00 38.20 1.73
739 740 3.074390 CCCTAATCCCTGGCACATGATAA 59.926 47.826 0.00 0.00 38.20 1.75
740 741 2.644299 CCCTAATCCCTGGCACATGATA 59.356 50.000 0.00 0.00 38.20 2.15
741 742 1.426598 CCCTAATCCCTGGCACATGAT 59.573 52.381 0.00 0.00 38.20 2.45
742 743 0.846015 CCCTAATCCCTGGCACATGA 59.154 55.000 0.00 0.00 38.20 3.07
743 744 0.846015 TCCCTAATCCCTGGCACATG 59.154 55.000 0.00 0.00 38.20 3.21
744 745 1.838611 ATCCCTAATCCCTGGCACAT 58.161 50.000 0.00 0.00 38.20 3.21
745 746 2.505672 TATCCCTAATCCCTGGCACA 57.494 50.000 0.00 0.00 0.00 4.57
746 747 3.876309 TTTATCCCTAATCCCTGGCAC 57.124 47.619 0.00 0.00 0.00 5.01
747 748 4.418526 TCATTTTATCCCTAATCCCTGGCA 59.581 41.667 0.00 0.00 0.00 4.92
748 749 4.767409 GTCATTTTATCCCTAATCCCTGGC 59.233 45.833 0.00 0.00 0.00 4.85
749 750 6.183361 TGAGTCATTTTATCCCTAATCCCTGG 60.183 42.308 0.00 0.00 0.00 4.45
750 751 6.841601 TGAGTCATTTTATCCCTAATCCCTG 58.158 40.000 0.00 0.00 0.00 4.45
751 752 7.257199 GGATGAGTCATTTTATCCCTAATCCCT 60.257 40.741 7.16 0.00 34.38 4.20
752 753 6.887002 GGATGAGTCATTTTATCCCTAATCCC 59.113 42.308 7.16 0.00 34.38 3.85
753 754 7.929941 GGATGAGTCATTTTATCCCTAATCC 57.070 40.000 7.16 0.00 34.38 3.01
760 761 6.302269 AGACATGGGATGAGTCATTTTATCC 58.698 40.000 7.16 4.06 38.66 2.59
761 762 8.908786 TTAGACATGGGATGAGTCATTTTATC 57.091 34.615 7.16 1.60 34.80 1.75
762 763 9.512588 GATTAGACATGGGATGAGTCATTTTAT 57.487 33.333 7.16 0.00 34.80 1.40
763 764 8.717717 AGATTAGACATGGGATGAGTCATTTTA 58.282 33.333 7.16 0.00 34.80 1.52
764 765 7.580910 AGATTAGACATGGGATGAGTCATTTT 58.419 34.615 7.16 0.00 34.80 1.82
765 766 7.146715 AGATTAGACATGGGATGAGTCATTT 57.853 36.000 7.16 0.00 34.80 2.32
766 767 6.328410 TGAGATTAGACATGGGATGAGTCATT 59.672 38.462 7.16 0.00 34.80 2.57
767 768 5.842874 TGAGATTAGACATGGGATGAGTCAT 59.157 40.000 4.98 4.98 34.80 3.06
768 769 5.211201 TGAGATTAGACATGGGATGAGTCA 58.789 41.667 0.00 0.00 34.80 3.41
769 770 5.798125 TGAGATTAGACATGGGATGAGTC 57.202 43.478 0.00 0.00 0.00 3.36
770 771 6.760440 ATTGAGATTAGACATGGGATGAGT 57.240 37.500 0.00 0.00 0.00 3.41
771 772 7.674120 TGTATTGAGATTAGACATGGGATGAG 58.326 38.462 0.00 0.00 0.00 2.90
772 773 7.616528 TGTATTGAGATTAGACATGGGATGA 57.383 36.000 0.00 0.00 0.00 2.92
773 774 8.859236 ATTGTATTGAGATTAGACATGGGATG 57.141 34.615 0.00 0.00 0.00 3.51
774 775 9.512588 GAATTGTATTGAGATTAGACATGGGAT 57.487 33.333 0.00 0.00 0.00 3.85
775 776 7.939039 GGAATTGTATTGAGATTAGACATGGGA 59.061 37.037 0.00 0.00 0.00 4.37
776 777 7.175641 GGGAATTGTATTGAGATTAGACATGGG 59.824 40.741 0.00 0.00 0.00 4.00
777 778 7.941238 AGGGAATTGTATTGAGATTAGACATGG 59.059 37.037 0.00 0.00 0.00 3.66
778 779 8.915057 AGGGAATTGTATTGAGATTAGACATG 57.085 34.615 0.00 0.00 0.00 3.21
780 781 8.988060 TGTAGGGAATTGTATTGAGATTAGACA 58.012 33.333 0.00 0.00 0.00 3.41
781 782 9.262358 GTGTAGGGAATTGTATTGAGATTAGAC 57.738 37.037 0.00 0.00 0.00 2.59
782 783 9.213777 AGTGTAGGGAATTGTATTGAGATTAGA 57.786 33.333 0.00 0.00 0.00 2.10
786 787 9.614792 GTTTAGTGTAGGGAATTGTATTGAGAT 57.385 33.333 0.00 0.00 0.00 2.75
787 788 8.822805 AGTTTAGTGTAGGGAATTGTATTGAGA 58.177 33.333 0.00 0.00 0.00 3.27
788 789 9.449719 AAGTTTAGTGTAGGGAATTGTATTGAG 57.550 33.333 0.00 0.00 0.00 3.02
789 790 9.444600 GAAGTTTAGTGTAGGGAATTGTATTGA 57.555 33.333 0.00 0.00 0.00 2.57
790 791 8.674607 GGAAGTTTAGTGTAGGGAATTGTATTG 58.325 37.037 0.00 0.00 0.00 1.90
791 792 8.387813 TGGAAGTTTAGTGTAGGGAATTGTATT 58.612 33.333 0.00 0.00 0.00 1.89
792 793 7.924541 TGGAAGTTTAGTGTAGGGAATTGTAT 58.075 34.615 0.00 0.00 0.00 2.29
793 794 7.319052 TGGAAGTTTAGTGTAGGGAATTGTA 57.681 36.000 0.00 0.00 0.00 2.41
794 795 6.195600 TGGAAGTTTAGTGTAGGGAATTGT 57.804 37.500 0.00 0.00 0.00 2.71
795 796 7.148069 GGAATGGAAGTTTAGTGTAGGGAATTG 60.148 40.741 0.00 0.00 0.00 2.32
796 797 6.890268 GGAATGGAAGTTTAGTGTAGGGAATT 59.110 38.462 0.00 0.00 0.00 2.17
797 798 6.424032 GGAATGGAAGTTTAGTGTAGGGAAT 58.576 40.000 0.00 0.00 0.00 3.01
798 799 5.280830 GGGAATGGAAGTTTAGTGTAGGGAA 60.281 44.000 0.00 0.00 0.00 3.97
799 800 4.226620 GGGAATGGAAGTTTAGTGTAGGGA 59.773 45.833 0.00 0.00 0.00 4.20
800 801 4.524053 GGGAATGGAAGTTTAGTGTAGGG 58.476 47.826 0.00 0.00 0.00 3.53
801 802 4.227527 AGGGGAATGGAAGTTTAGTGTAGG 59.772 45.833 0.00 0.00 0.00 3.18
802 803 5.437191 AGGGGAATGGAAGTTTAGTGTAG 57.563 43.478 0.00 0.00 0.00 2.74
803 804 5.280830 GGAAGGGGAATGGAAGTTTAGTGTA 60.281 44.000 0.00 0.00 0.00 2.90
804 805 4.508584 GGAAGGGGAATGGAAGTTTAGTGT 60.509 45.833 0.00 0.00 0.00 3.55
805 806 4.017126 GGAAGGGGAATGGAAGTTTAGTG 58.983 47.826 0.00 0.00 0.00 2.74
806 807 3.923425 AGGAAGGGGAATGGAAGTTTAGT 59.077 43.478 0.00 0.00 0.00 2.24
807 808 4.592997 AGGAAGGGGAATGGAAGTTTAG 57.407 45.455 0.00 0.00 0.00 1.85
808 809 6.471942 TTTAGGAAGGGGAATGGAAGTTTA 57.528 37.500 0.00 0.00 0.00 2.01
809 810 5.348259 TTTAGGAAGGGGAATGGAAGTTT 57.652 39.130 0.00 0.00 0.00 2.66
810 811 5.552430 ATTTAGGAAGGGGAATGGAAGTT 57.448 39.130 0.00 0.00 0.00 2.66
811 812 6.865651 ATATTTAGGAAGGGGAATGGAAGT 57.134 37.500 0.00 0.00 0.00 3.01
812 813 6.015095 GCAATATTTAGGAAGGGGAATGGAAG 60.015 42.308 0.00 0.00 0.00 3.46
813 814 5.838521 GCAATATTTAGGAAGGGGAATGGAA 59.161 40.000 0.00 0.00 0.00 3.53
814 815 5.393866 GCAATATTTAGGAAGGGGAATGGA 58.606 41.667 0.00 0.00 0.00 3.41
815 816 4.528206 GGCAATATTTAGGAAGGGGAATGG 59.472 45.833 0.00 0.00 0.00 3.16
816 817 5.147032 TGGCAATATTTAGGAAGGGGAATG 58.853 41.667 0.00 0.00 0.00 2.67
817 818 5.417170 TGGCAATATTTAGGAAGGGGAAT 57.583 39.130 0.00 0.00 0.00 3.01
818 819 4.890499 TGGCAATATTTAGGAAGGGGAA 57.110 40.909 0.00 0.00 0.00 3.97
819 820 4.890499 TTGGCAATATTTAGGAAGGGGA 57.110 40.909 0.00 0.00 0.00 4.81
820 821 4.202111 CGTTTGGCAATATTTAGGAAGGGG 60.202 45.833 0.00 0.00 0.00 4.79
821 822 4.736464 GCGTTTGGCAATATTTAGGAAGGG 60.736 45.833 0.00 0.00 42.87 3.95
822 823 4.359706 GCGTTTGGCAATATTTAGGAAGG 58.640 43.478 0.00 0.00 42.87 3.46
823 824 4.035017 CGCGTTTGGCAATATTTAGGAAG 58.965 43.478 0.00 0.00 43.84 3.46
824 825 3.732471 GCGCGTTTGGCAATATTTAGGAA 60.732 43.478 8.43 0.00 43.84 3.36
825 826 2.223386 GCGCGTTTGGCAATATTTAGGA 60.223 45.455 8.43 0.00 43.84 2.94
826 827 2.116366 GCGCGTTTGGCAATATTTAGG 58.884 47.619 8.43 0.00 43.84 2.69
827 828 2.783284 CAGCGCGTTTGGCAATATTTAG 59.217 45.455 8.43 0.00 43.84 1.85
828 829 2.162608 ACAGCGCGTTTGGCAATATTTA 59.837 40.909 8.43 0.00 43.84 1.40
829 830 1.067915 ACAGCGCGTTTGGCAATATTT 60.068 42.857 8.43 0.00 43.84 1.40
830 831 0.525761 ACAGCGCGTTTGGCAATATT 59.474 45.000 8.43 0.00 43.84 1.28
831 832 0.098728 GACAGCGCGTTTGGCAATAT 59.901 50.000 8.43 0.00 43.84 1.28
832 833 1.231296 TGACAGCGCGTTTGGCAATA 61.231 50.000 17.10 0.00 43.84 1.90
833 834 1.865788 ATGACAGCGCGTTTGGCAAT 61.866 50.000 21.88 10.30 43.84 3.56
834 835 2.069465 AATGACAGCGCGTTTGGCAA 62.069 50.000 21.88 0.00 43.84 4.52
835 836 2.069465 AAATGACAGCGCGTTTGGCA 62.069 50.000 20.66 20.66 43.84 4.92
836 837 1.371635 AAATGACAGCGCGTTTGGC 60.372 52.632 8.43 10.01 38.69 4.52
837 838 2.423202 CAAATGACAGCGCGTTTGG 58.577 52.632 8.43 0.00 39.77 3.28
838 839 1.003262 CCCAAATGACAGCGCGTTTG 61.003 55.000 8.43 9.30 41.92 2.93
839 840 1.285641 CCCAAATGACAGCGCGTTT 59.714 52.632 8.43 0.00 0.00 3.60
840 841 0.604243 TACCCAAATGACAGCGCGTT 60.604 50.000 8.43 0.00 0.00 4.84
841 842 0.392461 ATACCCAAATGACAGCGCGT 60.392 50.000 8.43 2.53 0.00 6.01
842 843 0.732571 AATACCCAAATGACAGCGCG 59.267 50.000 0.00 0.00 0.00 6.86
843 844 2.163412 TCAAATACCCAAATGACAGCGC 59.837 45.455 0.00 0.00 0.00 5.92
844 845 4.433186 TTCAAATACCCAAATGACAGCG 57.567 40.909 0.00 0.00 0.00 5.18
845 846 5.537188 TGTTTCAAATACCCAAATGACAGC 58.463 37.500 0.00 0.00 0.00 4.40
846 847 7.209475 ACTTGTTTCAAATACCCAAATGACAG 58.791 34.615 0.00 0.00 0.00 3.51
847 848 7.118496 ACTTGTTTCAAATACCCAAATGACA 57.882 32.000 0.00 0.00 0.00 3.58
848 849 8.432110 AAACTTGTTTCAAATACCCAAATGAC 57.568 30.769 0.00 0.00 0.00 3.06
849 850 8.887717 CAAAACTTGTTTCAAATACCCAAATGA 58.112 29.630 0.00 0.00 0.00 2.57
850 851 8.127954 CCAAAACTTGTTTCAAATACCCAAATG 58.872 33.333 0.00 0.00 0.00 2.32
851 852 8.049721 TCCAAAACTTGTTTCAAATACCCAAAT 58.950 29.630 0.00 0.00 0.00 2.32
852 853 7.334671 GTCCAAAACTTGTTTCAAATACCCAAA 59.665 33.333 0.00 0.00 0.00 3.28
853 854 6.819146 GTCCAAAACTTGTTTCAAATACCCAA 59.181 34.615 0.00 0.00 0.00 4.12
854 855 6.070767 TGTCCAAAACTTGTTTCAAATACCCA 60.071 34.615 0.00 0.00 0.00 4.51
855 856 6.342111 TGTCCAAAACTTGTTTCAAATACCC 58.658 36.000 0.00 0.00 0.00 3.69
856 857 7.039270 ACTGTCCAAAACTTGTTTCAAATACC 58.961 34.615 0.00 0.00 0.00 2.73
857 858 8.474006 AACTGTCCAAAACTTGTTTCAAATAC 57.526 30.769 0.00 0.00 0.00 1.89
920 996 0.737715 CTGCAGTTGCGTCTACCTCC 60.738 60.000 5.25 0.00 45.83 4.30
924 1000 1.221466 TGCACTGCAGTTGCGTCTAC 61.221 55.000 25.65 8.91 45.83 2.59
1051 1127 4.814294 GAGGCGGTCGATGGCGTT 62.814 66.667 7.19 0.00 38.98 4.84
1160 1236 3.319198 GGTGGAGGAGGCGGTTGA 61.319 66.667 0.00 0.00 0.00 3.18
1216 1292 1.629297 GGATGGAGGAGAGGAGGGT 59.371 63.158 0.00 0.00 0.00 4.34
1336 1412 1.913762 ACCAGGAGAAGTGGTCCCG 60.914 63.158 0.00 0.00 45.74 5.14
1449 1525 2.243957 CGCGCTGAACTGGTTGTCA 61.244 57.895 5.56 0.00 0.00 3.58
1617 1693 2.526873 AACACCCTCCTGGCGTCT 60.527 61.111 0.00 0.00 37.83 4.18
1648 1724 1.977544 AGGAGACAACGTCCCGGAG 60.978 63.158 0.73 0.00 34.21 4.63
1958 2034 0.611062 CGTCCAGGACACCAGGTCTA 60.611 60.000 20.13 0.00 46.16 2.59
1971 2047 0.318529 CAGAGATCATCGCCGTCCAG 60.319 60.000 0.00 0.00 0.00 3.86
2025 2101 2.279582 AGAACATGTCGAAGTAGCGG 57.720 50.000 0.00 0.00 0.00 5.52
2097 2173 1.303799 CCAGACCAGCATGAGCACAC 61.304 60.000 0.00 0.00 45.49 3.82
2119 2195 4.302559 GGAAGACCTCCATACCTTTGTT 57.697 45.455 0.00 0.00 44.67 2.83
2168 2244 2.880890 GCATAATGATCAGGGGTGTGTC 59.119 50.000 0.09 0.00 0.00 3.67
2176 2252 2.874086 TCACGCAAGCATAATGATCAGG 59.126 45.455 0.09 0.00 45.62 3.86
2376 2452 2.733820 CGAGAGTAACATACGTCGCT 57.266 50.000 0.00 0.00 34.77 4.93
2394 2470 5.106712 ACCAACCGATGCATAAATATTAGCG 60.107 40.000 0.00 0.00 0.00 4.26
2415 2491 4.136796 CCTCAACTTCATCAAACAGACCA 58.863 43.478 0.00 0.00 0.00 4.02
2634 2710 2.207590 TGCTCATCTTCGACATCATGC 58.792 47.619 0.00 0.00 0.00 4.06
2682 2758 1.308047 ATGCAACAGCAAGTCGTTCA 58.692 45.000 0.00 0.00 42.37 3.18
2803 2879 2.631160 ACGATGATCTCTCTCCGAGT 57.369 50.000 0.00 0.00 40.75 4.18
2807 2883 3.504520 GTCCCTTACGATGATCTCTCTCC 59.495 52.174 0.00 0.00 0.00 3.71
2877 2953 8.949177 CACATATGCAGCATAGATTACCAATAA 58.051 33.333 19.83 0.00 29.42 1.40
2907 2983 5.692115 TGCCTATATCAGAAGTCAAACCA 57.308 39.130 0.00 0.00 0.00 3.67
2968 3046 4.518211 ACCAGCTGCTAAATCAATAGATGC 59.482 41.667 8.66 0.00 33.90 3.91
2995 3073 3.565905 GGCATTGCAATAGCCTCATAC 57.434 47.619 29.91 13.66 44.92 2.39
3003 3081 2.646930 TGGAGTCTGGCATTGCAATAG 58.353 47.619 12.53 6.48 0.00 1.73
3008 3086 1.093159 CTCTTGGAGTCTGGCATTGC 58.907 55.000 0.00 0.00 0.00 3.56
3009 3087 2.775911 TCTCTTGGAGTCTGGCATTG 57.224 50.000 0.00 0.00 0.00 2.82
3010 3088 3.009916 ACAATCTCTTGGAGTCTGGCATT 59.990 43.478 0.00 0.00 36.64 3.56
3011 3089 2.575279 ACAATCTCTTGGAGTCTGGCAT 59.425 45.455 0.00 0.00 36.64 4.40
3012 3090 1.980765 ACAATCTCTTGGAGTCTGGCA 59.019 47.619 0.00 0.00 36.64 4.92
3018 3219 6.627087 TTGATAAGGACAATCTCTTGGAGT 57.373 37.500 0.00 0.00 36.64 3.85
3027 3228 6.874288 AATAGCAGCTTGATAAGGACAATC 57.126 37.500 0.00 0.00 0.00 2.67
3028 3229 6.939163 CCTAATAGCAGCTTGATAAGGACAAT 59.061 38.462 0.00 0.00 0.00 2.71
3029 3230 6.099701 TCCTAATAGCAGCTTGATAAGGACAA 59.900 38.462 0.00 0.00 24.75 3.18
3030 3231 5.602561 TCCTAATAGCAGCTTGATAAGGACA 59.397 40.000 0.00 0.00 24.75 4.02
3031 3232 6.102897 TCCTAATAGCAGCTTGATAAGGAC 57.897 41.667 0.00 0.00 24.75 3.85
3068 3269 3.751698 CCAAGGTACTGGAGCTACAAAAC 59.248 47.826 0.00 0.36 40.86 2.43
3081 3282 5.953571 AGGAGAAAAATTGTCCAAGGTACT 58.046 37.500 8.73 0.00 45.11 2.73
3082 3283 6.004574 AGAGGAGAAAAATTGTCCAAGGTAC 58.995 40.000 8.73 0.00 45.11 3.34
3321 3525 1.119684 TGGGTAGCATGCTCGTGTAT 58.880 50.000 26.57 0.00 0.00 2.29
3367 3580 7.831193 AGAGTTATACCTGTTTCAAAGCATCAT 59.169 33.333 0.00 0.00 0.00 2.45
3497 3710 1.304891 ACTGAGAGCTACCCTCCTCT 58.695 55.000 0.00 0.00 41.74 3.69
3564 3777 9.899226 ATGTTTACTGTAAAAATCAGCTTTCTC 57.101 29.630 14.10 0.00 36.50 2.87
3791 4004 1.602668 GCACTTGTTACGGTCACGGTA 60.603 52.381 0.00 0.00 46.48 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.