Multiple sequence alignment - TraesCS4D01G232800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G232800 chr4D 100.000 2702 0 0 1 2702 393645147 393647848 0.000000e+00 4990.0
1 TraesCS4D01G232800 chr4D 99.303 2153 15 0 550 2702 393248970 393246818 0.000000e+00 3893.0
2 TraesCS4D01G232800 chr4D 90.267 524 32 8 1496 2019 393154242 393153738 0.000000e+00 667.0
3 TraesCS4D01G232800 chr4D 83.688 705 68 29 800 1482 393154963 393154284 2.950000e-174 621.0
4 TraesCS4D01G232800 chr4B 90.424 1744 80 26 548 2246 482984876 482983175 0.000000e+00 2215.0
5 TraesCS4D01G232800 chr4B 85.615 716 70 18 786 1480 482979058 482978355 0.000000e+00 721.0
6 TraesCS4D01G232800 chr4B 92.816 348 20 5 2359 2702 482983158 482982812 1.440000e-137 499.0
7 TraesCS4D01G232800 chr4B 85.924 341 42 5 1476 1815 482978330 482977995 2.560000e-95 359.0
8 TraesCS4D01G232800 chr4A 90.133 1358 44 27 734 2059 74601441 74600142 0.000000e+00 1683.0
9 TraesCS4D01G232800 chr4A 84.049 978 82 35 1006 1930 74588811 74587855 0.000000e+00 874.0
10 TraesCS4D01G232800 chr4A 89.134 681 42 16 1839 2510 74598771 74598114 0.000000e+00 819.0
11 TraesCS4D01G232800 chr4A 89.318 674 34 18 1780 2448 74599454 74598814 0.000000e+00 811.0
12 TraesCS4D01G232800 chr4A 93.201 353 17 3 2102 2448 74600143 74599792 1.860000e-141 512.0
13 TraesCS4D01G232800 chr4A 89.046 283 22 3 1839 2120 74599749 74599475 2.580000e-90 342.0
14 TraesCS4D01G232800 chr4A 80.916 131 13 7 855 985 74588983 74588865 2.860000e-15 93.5
15 TraesCS4D01G232800 chr5B 92.483 1144 74 6 983 2125 63253910 63252778 0.000000e+00 1626.0
16 TraesCS4D01G232800 chr5B 93.694 222 12 2 2188 2409 63252650 63252431 5.580000e-87 331.0
17 TraesCS4D01G232800 chr5B 89.904 208 19 2 687 893 416030007 416030213 1.590000e-67 267.0
18 TraesCS4D01G232800 chr7A 94.037 436 17 2 1 427 151381428 151381863 0.000000e+00 652.0
19 TraesCS4D01G232800 chr3D 94.034 352 17 4 1021 1370 124500420 124500071 5.120000e-147 531.0
20 TraesCS4D01G232800 chr3D 84.289 471 53 14 1473 1927 124498238 124497773 8.880000e-120 440.0
21 TraesCS4D01G232800 chr3D 83.424 368 30 10 11 348 550632612 550632246 2.020000e-81 313.0
22 TraesCS4D01G232800 chr3D 84.783 92 12 2 1393 1482 124498348 124498257 1.030000e-14 91.6
23 TraesCS4D01G232800 chr7B 95.041 121 5 1 434 553 66018441 66018321 3.550000e-44 189.0
24 TraesCS4D01G232800 chrUn 93.913 115 7 0 434 548 305965540 305965654 9.940000e-40 174.0
25 TraesCS4D01G232800 chr3A 93.277 119 7 1 434 551 237061915 237062033 9.940000e-40 174.0
26 TraesCS4D01G232800 chr3B 93.043 115 8 0 434 548 709739894 709739780 4.630000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G232800 chr4D 393645147 393647848 2701 False 4990.00 4990 100.00000 1 2702 1 chr4D.!!$F1 2701
1 TraesCS4D01G232800 chr4D 393246818 393248970 2152 True 3893.00 3893 99.30300 550 2702 1 chr4D.!!$R1 2152
2 TraesCS4D01G232800 chr4D 393153738 393154963 1225 True 644.00 667 86.97750 800 2019 2 chr4D.!!$R2 1219
3 TraesCS4D01G232800 chr4B 482977995 482984876 6881 True 948.50 2215 88.69475 548 2702 4 chr4B.!!$R1 2154
4 TraesCS4D01G232800 chr4A 74598114 74601441 3327 True 833.40 1683 90.16640 734 2510 5 chr4A.!!$R2 1776
5 TraesCS4D01G232800 chr4A 74587855 74588983 1128 True 483.75 874 82.48250 855 1930 2 chr4A.!!$R1 1075
6 TraesCS4D01G232800 chr5B 63252431 63253910 1479 True 978.50 1626 93.08850 983 2409 2 chr5B.!!$R1 1426
7 TraesCS4D01G232800 chr3D 124497773 124500420 2647 True 354.20 531 87.70200 1021 1927 3 chr3D.!!$R2 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.033504 ACTCACGGTCGCAACAGAAT 59.966 50.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 3794 6.803154 AAGCATTACACTAAGTTCAGAACC 57.197 37.5 9.85 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.568623 AAGGTAAAGCACACAGAGGG 57.431 50.000 0.00 0.00 0.00 4.30
30 31 3.346315 CACACAGAGGGCACATAATTCA 58.654 45.455 0.00 0.00 0.00 2.57
31 32 3.127548 CACACAGAGGGCACATAATTCAC 59.872 47.826 0.00 0.00 0.00 3.18
32 33 3.009473 ACACAGAGGGCACATAATTCACT 59.991 43.478 0.00 0.00 0.00 3.41
33 34 3.376234 CACAGAGGGCACATAATTCACTG 59.624 47.826 0.00 0.00 0.00 3.66
34 35 3.009473 ACAGAGGGCACATAATTCACTGT 59.991 43.478 0.00 0.00 0.00 3.55
35 36 4.225042 ACAGAGGGCACATAATTCACTGTA 59.775 41.667 0.00 0.00 34.95 2.74
36 37 5.104360 ACAGAGGGCACATAATTCACTGTAT 60.104 40.000 0.00 0.00 34.95 2.29
37 38 5.468072 CAGAGGGCACATAATTCACTGTATC 59.532 44.000 0.00 0.00 0.00 2.24
38 39 4.718961 AGGGCACATAATTCACTGTATCC 58.281 43.478 0.00 0.00 0.00 2.59
39 40 4.165950 AGGGCACATAATTCACTGTATCCA 59.834 41.667 0.00 0.00 0.00 3.41
40 41 5.072741 GGGCACATAATTCACTGTATCCAT 58.927 41.667 0.00 0.00 0.00 3.41
41 42 6.044287 AGGGCACATAATTCACTGTATCCATA 59.956 38.462 0.00 0.00 0.00 2.74
42 43 6.714810 GGGCACATAATTCACTGTATCCATAA 59.285 38.462 0.00 0.00 0.00 1.90
43 44 7.094634 GGGCACATAATTCACTGTATCCATAAG 60.095 40.741 0.00 0.00 0.00 1.73
44 45 7.445402 GGCACATAATTCACTGTATCCATAAGT 59.555 37.037 0.00 0.00 0.00 2.24
45 46 8.285394 GCACATAATTCACTGTATCCATAAGTG 58.715 37.037 0.00 0.00 42.17 3.16
46 47 8.285394 CACATAATTCACTGTATCCATAAGTGC 58.715 37.037 0.00 0.00 40.89 4.40
47 48 7.992608 ACATAATTCACTGTATCCATAAGTGCA 59.007 33.333 0.00 0.00 40.89 4.57
48 49 9.006839 CATAATTCACTGTATCCATAAGTGCAT 57.993 33.333 0.00 0.00 40.89 3.96
49 50 7.502120 AATTCACTGTATCCATAAGTGCATC 57.498 36.000 0.00 0.00 40.89 3.91
50 51 5.612725 TCACTGTATCCATAAGTGCATCA 57.387 39.130 0.00 0.00 40.89 3.07
51 52 5.604565 TCACTGTATCCATAAGTGCATCAG 58.395 41.667 0.00 0.00 40.89 2.90
52 53 5.363580 TCACTGTATCCATAAGTGCATCAGA 59.636 40.000 0.00 0.00 40.89 3.27
53 54 6.042437 TCACTGTATCCATAAGTGCATCAGAT 59.958 38.462 0.00 0.00 40.89 2.90
54 55 7.233348 TCACTGTATCCATAAGTGCATCAGATA 59.767 37.037 0.00 0.00 40.89 1.98
55 56 7.544915 CACTGTATCCATAAGTGCATCAGATAG 59.455 40.741 0.00 0.00 35.34 2.08
56 57 7.452813 ACTGTATCCATAAGTGCATCAGATAGA 59.547 37.037 0.00 0.00 0.00 1.98
57 58 8.193953 TGTATCCATAAGTGCATCAGATAGAA 57.806 34.615 0.00 0.00 0.00 2.10
58 59 8.309656 TGTATCCATAAGTGCATCAGATAGAAG 58.690 37.037 0.00 0.00 0.00 2.85
59 60 5.545588 TCCATAAGTGCATCAGATAGAAGC 58.454 41.667 0.00 0.00 41.21 3.86
66 67 4.773013 TGCATCAGATAGAAGCATGAACA 58.227 39.130 0.00 0.00 45.18 3.18
67 68 4.814771 TGCATCAGATAGAAGCATGAACAG 59.185 41.667 0.00 0.00 45.18 3.16
68 69 4.815308 GCATCAGATAGAAGCATGAACAGT 59.185 41.667 0.00 0.00 40.56 3.55
69 70 5.296283 GCATCAGATAGAAGCATGAACAGTT 59.704 40.000 0.00 0.00 40.56 3.16
70 71 6.183360 GCATCAGATAGAAGCATGAACAGTTT 60.183 38.462 0.00 0.00 40.56 2.66
71 72 6.732531 TCAGATAGAAGCATGAACAGTTTG 57.267 37.500 0.00 0.00 0.00 2.93
72 73 5.122869 TCAGATAGAAGCATGAACAGTTTGC 59.877 40.000 0.00 2.15 36.63 3.68
73 74 5.005740 AGATAGAAGCATGAACAGTTTGCA 58.994 37.500 11.68 0.00 38.84 4.08
74 75 5.474532 AGATAGAAGCATGAACAGTTTGCAA 59.525 36.000 11.68 0.00 38.84 4.08
75 76 4.389890 AGAAGCATGAACAGTTTGCAAA 57.610 36.364 8.05 8.05 38.84 3.68
76 77 4.365723 AGAAGCATGAACAGTTTGCAAAG 58.634 39.130 13.26 4.35 38.84 2.77
77 78 4.098349 AGAAGCATGAACAGTTTGCAAAGA 59.902 37.500 13.26 0.00 38.84 2.52
78 79 3.709987 AGCATGAACAGTTTGCAAAGAC 58.290 40.909 13.26 2.08 38.84 3.01
79 80 2.796593 GCATGAACAGTTTGCAAAGACC 59.203 45.455 13.26 0.58 36.40 3.85
80 81 3.737663 GCATGAACAGTTTGCAAAGACCA 60.738 43.478 13.26 7.08 36.40 4.02
81 82 4.431809 CATGAACAGTTTGCAAAGACCAA 58.568 39.130 13.26 0.00 0.00 3.67
82 83 3.843999 TGAACAGTTTGCAAAGACCAAC 58.156 40.909 13.26 0.00 0.00 3.77
83 84 2.559998 ACAGTTTGCAAAGACCAACG 57.440 45.000 13.26 0.12 0.00 4.10
84 85 2.088423 ACAGTTTGCAAAGACCAACGA 58.912 42.857 13.26 0.00 0.00 3.85
85 86 2.490115 ACAGTTTGCAAAGACCAACGAA 59.510 40.909 13.26 0.00 0.00 3.85
86 87 2.851824 CAGTTTGCAAAGACCAACGAAC 59.148 45.455 13.26 0.00 0.00 3.95
87 88 2.490115 AGTTTGCAAAGACCAACGAACA 59.510 40.909 13.26 0.00 0.00 3.18
88 89 3.057174 AGTTTGCAAAGACCAACGAACAA 60.057 39.130 13.26 0.00 0.00 2.83
89 90 3.577649 TTGCAAAGACCAACGAACAAA 57.422 38.095 0.00 0.00 0.00 2.83
90 91 3.143807 TGCAAAGACCAACGAACAAAG 57.856 42.857 0.00 0.00 0.00 2.77
91 92 2.750166 TGCAAAGACCAACGAACAAAGA 59.250 40.909 0.00 0.00 0.00 2.52
92 93 3.380004 TGCAAAGACCAACGAACAAAGAT 59.620 39.130 0.00 0.00 0.00 2.40
93 94 4.142271 TGCAAAGACCAACGAACAAAGATT 60.142 37.500 0.00 0.00 0.00 2.40
94 95 4.803613 GCAAAGACCAACGAACAAAGATTT 59.196 37.500 0.00 0.00 0.00 2.17
95 96 5.276348 GCAAAGACCAACGAACAAAGATTTG 60.276 40.000 3.79 3.79 43.62 2.32
96 97 5.828299 AAGACCAACGAACAAAGATTTGA 57.172 34.783 12.07 0.00 40.55 2.69
97 98 5.828299 AGACCAACGAACAAAGATTTGAA 57.172 34.783 12.07 0.00 40.55 2.69
98 99 6.202516 AGACCAACGAACAAAGATTTGAAA 57.797 33.333 12.07 0.00 40.55 2.69
99 100 6.265577 AGACCAACGAACAAAGATTTGAAAG 58.734 36.000 12.07 5.09 40.55 2.62
100 101 6.094881 AGACCAACGAACAAAGATTTGAAAGA 59.905 34.615 12.07 0.00 40.55 2.52
101 102 6.626302 ACCAACGAACAAAGATTTGAAAGAA 58.374 32.000 12.07 0.00 40.55 2.52
102 103 7.093992 ACCAACGAACAAAGATTTGAAAGAAA 58.906 30.769 12.07 0.00 40.55 2.52
103 104 7.600752 ACCAACGAACAAAGATTTGAAAGAAAA 59.399 29.630 12.07 0.00 40.55 2.29
104 105 7.897800 CCAACGAACAAAGATTTGAAAGAAAAC 59.102 33.333 12.07 0.00 40.55 2.43
105 106 8.431593 CAACGAACAAAGATTTGAAAGAAAACA 58.568 29.630 12.07 0.00 40.55 2.83
106 107 8.173321 ACGAACAAAGATTTGAAAGAAAACAG 57.827 30.769 12.07 0.00 40.55 3.16
107 108 8.026607 ACGAACAAAGATTTGAAAGAAAACAGA 58.973 29.630 12.07 0.00 40.55 3.41
108 109 8.526681 CGAACAAAGATTTGAAAGAAAACAGAG 58.473 33.333 12.07 0.00 40.55 3.35
109 110 8.707938 AACAAAGATTTGAAAGAAAACAGAGG 57.292 30.769 12.07 0.00 40.55 3.69
110 111 7.840931 ACAAAGATTTGAAAGAAAACAGAGGT 58.159 30.769 12.07 0.00 40.55 3.85
111 112 7.761249 ACAAAGATTTGAAAGAAAACAGAGGTG 59.239 33.333 12.07 0.00 40.55 4.00
112 113 7.645058 AAGATTTGAAAGAAAACAGAGGTGA 57.355 32.000 0.00 0.00 0.00 4.02
113 114 7.645058 AGATTTGAAAGAAAACAGAGGTGAA 57.355 32.000 0.00 0.00 0.00 3.18
114 115 7.710896 AGATTTGAAAGAAAACAGAGGTGAAG 58.289 34.615 0.00 0.00 0.00 3.02
115 116 5.835113 TTGAAAGAAAACAGAGGTGAAGG 57.165 39.130 0.00 0.00 0.00 3.46
116 117 3.632145 TGAAAGAAAACAGAGGTGAAGGC 59.368 43.478 0.00 0.00 0.00 4.35
117 118 1.884235 AGAAAACAGAGGTGAAGGCG 58.116 50.000 0.00 0.00 0.00 5.52
118 119 0.875059 GAAAACAGAGGTGAAGGCGG 59.125 55.000 0.00 0.00 0.00 6.13
119 120 0.472471 AAAACAGAGGTGAAGGCGGA 59.528 50.000 0.00 0.00 0.00 5.54
120 121 0.035458 AAACAGAGGTGAAGGCGGAG 59.965 55.000 0.00 0.00 0.00 4.63
121 122 1.831652 AACAGAGGTGAAGGCGGAGG 61.832 60.000 0.00 0.00 0.00 4.30
122 123 1.984570 CAGAGGTGAAGGCGGAGGA 60.985 63.158 0.00 0.00 0.00 3.71
123 124 1.002274 AGAGGTGAAGGCGGAGGAT 59.998 57.895 0.00 0.00 0.00 3.24
124 125 1.144936 GAGGTGAAGGCGGAGGATG 59.855 63.158 0.00 0.00 0.00 3.51
125 126 1.613630 AGGTGAAGGCGGAGGATGT 60.614 57.895 0.00 0.00 0.00 3.06
126 127 1.450312 GGTGAAGGCGGAGGATGTG 60.450 63.158 0.00 0.00 0.00 3.21
127 128 1.450312 GTGAAGGCGGAGGATGTGG 60.450 63.158 0.00 0.00 0.00 4.17
128 129 1.612146 TGAAGGCGGAGGATGTGGA 60.612 57.895 0.00 0.00 0.00 4.02
129 130 1.153349 GAAGGCGGAGGATGTGGAC 60.153 63.158 0.00 0.00 0.00 4.02
130 131 1.899437 GAAGGCGGAGGATGTGGACA 61.899 60.000 0.00 0.00 0.00 4.02
131 132 2.125106 GGCGGAGGATGTGGACAC 60.125 66.667 0.00 0.00 0.00 3.67
132 133 2.662596 GCGGAGGATGTGGACACA 59.337 61.111 7.68 7.68 46.44 3.72
142 143 2.209690 TGTGGACACATAGACCTCGA 57.790 50.000 0.13 0.00 36.21 4.04
143 144 2.521126 TGTGGACACATAGACCTCGAA 58.479 47.619 0.13 0.00 36.21 3.71
144 145 2.492088 TGTGGACACATAGACCTCGAAG 59.508 50.000 0.13 0.00 36.21 3.79
145 146 2.753452 GTGGACACATAGACCTCGAAGA 59.247 50.000 0.00 0.00 32.90 2.87
146 147 5.639758 TGTGGACACATAGACCTCGAAGAG 61.640 50.000 0.13 0.00 45.35 2.85
156 157 3.509757 TCGAAGAGGAGCTCGCCG 61.510 66.667 7.83 6.57 35.36 6.46
157 158 4.560856 CGAAGAGGAGCTCGCCGG 62.561 72.222 7.83 0.00 35.36 6.13
158 159 4.214327 GAAGAGGAGCTCGCCGGG 62.214 72.222 7.83 0.00 35.36 5.73
166 167 4.424566 GCTCGCCGGGTCGTTGTA 62.425 66.667 2.18 0.00 0.00 2.41
167 168 2.202570 CTCGCCGGGTCGTTGTAG 60.203 66.667 2.18 0.00 0.00 2.74
168 169 2.672651 TCGCCGGGTCGTTGTAGA 60.673 61.111 2.18 0.00 0.00 2.59
169 170 2.001361 CTCGCCGGGTCGTTGTAGAT 62.001 60.000 2.18 0.00 0.00 1.98
170 171 0.747644 TCGCCGGGTCGTTGTAGATA 60.748 55.000 2.18 0.00 0.00 1.98
171 172 0.101040 CGCCGGGTCGTTGTAGATAA 59.899 55.000 2.18 0.00 0.00 1.75
172 173 1.564207 GCCGGGTCGTTGTAGATAAC 58.436 55.000 2.18 0.00 0.00 1.89
173 174 1.135024 GCCGGGTCGTTGTAGATAACA 60.135 52.381 2.18 0.00 35.88 2.41
174 175 2.805845 CCGGGTCGTTGTAGATAACAG 58.194 52.381 0.00 0.00 39.87 3.16
175 176 2.190981 CGGGTCGTTGTAGATAACAGC 58.809 52.381 0.00 0.00 39.87 4.40
176 177 2.416296 CGGGTCGTTGTAGATAACAGCA 60.416 50.000 0.00 0.00 39.13 4.41
177 178 3.737047 CGGGTCGTTGTAGATAACAGCAT 60.737 47.826 0.00 0.00 39.13 3.79
178 179 3.555956 GGGTCGTTGTAGATAACAGCATG 59.444 47.826 0.00 0.00 39.13 4.06
179 180 4.430007 GGTCGTTGTAGATAACAGCATGA 58.570 43.478 0.00 0.00 39.13 3.07
180 181 4.868171 GGTCGTTGTAGATAACAGCATGAA 59.132 41.667 0.00 0.00 39.13 2.57
181 182 5.005779 GGTCGTTGTAGATAACAGCATGAAG 59.994 44.000 0.00 0.00 39.13 3.02
182 183 5.805486 GTCGTTGTAGATAACAGCATGAAGA 59.195 40.000 0.00 0.00 39.13 2.87
183 184 6.020281 GTCGTTGTAGATAACAGCATGAAGAG 60.020 42.308 0.00 0.00 39.13 2.85
184 185 6.036470 CGTTGTAGATAACAGCATGAAGAGA 58.964 40.000 0.00 0.00 39.13 3.10
185 186 6.198029 CGTTGTAGATAACAGCATGAAGAGAG 59.802 42.308 0.00 0.00 39.13 3.20
186 187 5.595885 TGTAGATAACAGCATGAAGAGAGC 58.404 41.667 0.00 0.00 39.69 4.09
187 188 3.715495 AGATAACAGCATGAAGAGAGCG 58.285 45.455 0.00 0.00 39.69 5.03
188 189 3.131933 AGATAACAGCATGAAGAGAGCGT 59.868 43.478 0.00 0.00 39.69 5.07
189 190 2.175878 AACAGCATGAAGAGAGCGTT 57.824 45.000 0.00 0.00 39.69 4.84
190 191 1.436600 ACAGCATGAAGAGAGCGTTG 58.563 50.000 0.00 0.00 39.69 4.10
191 192 0.096628 CAGCATGAAGAGAGCGTTGC 59.903 55.000 0.00 0.00 39.69 4.17
192 193 1.023513 AGCATGAAGAGAGCGTTGCC 61.024 55.000 0.00 0.00 0.00 4.52
193 194 1.300971 GCATGAAGAGAGCGTTGCCA 61.301 55.000 0.00 0.00 0.00 4.92
194 195 0.725686 CATGAAGAGAGCGTTGCCAG 59.274 55.000 0.00 0.00 0.00 4.85
195 196 0.392193 ATGAAGAGAGCGTTGCCAGG 60.392 55.000 0.00 0.00 0.00 4.45
196 197 2.359230 AAGAGAGCGTTGCCAGGC 60.359 61.111 3.66 3.66 0.00 4.85
197 198 3.182590 AAGAGAGCGTTGCCAGGCA 62.183 57.895 11.22 11.22 36.16 4.75
198 199 3.426568 GAGAGCGTTGCCAGGCAC 61.427 66.667 15.89 8.83 38.71 5.01
201 202 4.892965 AGCGTTGCCAGGCACCAA 62.893 61.111 15.89 0.00 38.71 3.67
202 203 4.347453 GCGTTGCCAGGCACCAAG 62.347 66.667 15.89 3.86 38.71 3.61
203 204 4.347453 CGTTGCCAGGCACCAAGC 62.347 66.667 15.89 1.26 38.71 4.01
212 213 4.809070 GCACCAAGCCTCTCACTT 57.191 55.556 0.00 0.00 37.23 3.16
213 214 2.549332 GCACCAAGCCTCTCACTTC 58.451 57.895 0.00 0.00 37.23 3.01
214 215 0.036022 GCACCAAGCCTCTCACTTCT 59.964 55.000 0.00 0.00 37.23 2.85
215 216 1.943507 GCACCAAGCCTCTCACTTCTC 60.944 57.143 0.00 0.00 37.23 2.87
216 217 0.605589 ACCAAGCCTCTCACTTCTCG 59.394 55.000 0.00 0.00 0.00 4.04
217 218 0.739112 CCAAGCCTCTCACTTCTCGC 60.739 60.000 0.00 0.00 0.00 5.03
218 219 0.739112 CAAGCCTCTCACTTCTCGCC 60.739 60.000 0.00 0.00 0.00 5.54
219 220 2.202676 GCCTCTCACTTCTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
220 221 2.995872 GCCTCTCACTTCTCGCCGT 61.996 63.158 0.00 0.00 0.00 5.68
221 222 1.137825 CCTCTCACTTCTCGCCGTC 59.862 63.158 0.00 0.00 0.00 4.79
222 223 1.226156 CTCTCACTTCTCGCCGTCG 60.226 63.158 0.00 0.00 0.00 5.12
223 224 1.636570 CTCTCACTTCTCGCCGTCGA 61.637 60.000 0.00 0.00 43.28 4.20
224 225 1.209383 CTCACTTCTCGCCGTCGAA 59.791 57.895 0.00 0.00 44.98 3.71
225 226 1.066114 CTCACTTCTCGCCGTCGAAC 61.066 60.000 0.00 0.00 44.98 3.95
226 227 1.081376 CACTTCTCGCCGTCGAACT 60.081 57.895 0.00 0.00 44.98 3.01
227 228 1.066114 CACTTCTCGCCGTCGAACTC 61.066 60.000 0.00 0.00 44.98 3.01
228 229 1.209383 CTTCTCGCCGTCGAACTCA 59.791 57.895 0.00 0.00 44.98 3.41
229 230 1.066114 CTTCTCGCCGTCGAACTCAC 61.066 60.000 0.00 0.00 44.98 3.51
230 231 2.775359 TTCTCGCCGTCGAACTCACG 62.775 60.000 0.00 0.00 44.98 4.35
235 236 3.164011 CGTCGAACTCACGGTCGC 61.164 66.667 0.00 0.00 33.46 5.19
236 237 2.050714 GTCGAACTCACGGTCGCA 60.051 61.111 0.00 0.00 0.00 5.10
237 238 1.659335 GTCGAACTCACGGTCGCAA 60.659 57.895 0.00 0.00 0.00 4.85
238 239 1.659335 TCGAACTCACGGTCGCAAC 60.659 57.895 0.00 0.00 0.00 4.17
239 240 1.947146 CGAACTCACGGTCGCAACA 60.947 57.895 0.00 0.00 0.00 3.33
240 241 1.853319 GAACTCACGGTCGCAACAG 59.147 57.895 0.00 0.00 0.00 3.16
241 242 0.596600 GAACTCACGGTCGCAACAGA 60.597 55.000 0.00 0.00 0.00 3.41
242 243 0.179094 AACTCACGGTCGCAACAGAA 60.179 50.000 0.00 0.00 0.00 3.02
243 244 0.033504 ACTCACGGTCGCAACAGAAT 59.966 50.000 0.00 0.00 0.00 2.40
244 245 1.148310 CTCACGGTCGCAACAGAATT 58.852 50.000 0.00 0.00 0.00 2.17
245 246 1.126846 CTCACGGTCGCAACAGAATTC 59.873 52.381 0.00 0.00 0.00 2.17
246 247 0.865111 CACGGTCGCAACAGAATTCA 59.135 50.000 8.44 0.00 0.00 2.57
247 248 0.865769 ACGGTCGCAACAGAATTCAC 59.134 50.000 8.44 0.00 0.00 3.18
248 249 1.148310 CGGTCGCAACAGAATTCACT 58.852 50.000 8.44 0.00 0.00 3.41
249 250 1.531149 CGGTCGCAACAGAATTCACTT 59.469 47.619 8.44 0.00 0.00 3.16
250 251 2.662791 CGGTCGCAACAGAATTCACTTG 60.663 50.000 8.44 9.18 0.00 3.16
251 252 2.310577 GTCGCAACAGAATTCACTTGC 58.689 47.619 21.64 21.64 0.00 4.01
252 253 2.031682 GTCGCAACAGAATTCACTTGCT 60.032 45.455 25.56 2.06 33.67 3.91
253 254 2.224079 TCGCAACAGAATTCACTTGCTC 59.776 45.455 25.56 9.17 33.67 4.26
254 255 2.225019 CGCAACAGAATTCACTTGCTCT 59.775 45.455 25.56 0.00 33.67 4.09
255 256 3.666374 CGCAACAGAATTCACTTGCTCTC 60.666 47.826 25.56 8.44 33.67 3.20
256 257 3.501445 GCAACAGAATTCACTTGCTCTCT 59.499 43.478 23.17 0.00 33.13 3.10
257 258 4.023365 GCAACAGAATTCACTTGCTCTCTT 60.023 41.667 23.17 0.00 33.13 2.85
258 259 5.687828 CAACAGAATTCACTTGCTCTCTTC 58.312 41.667 8.44 0.00 0.00 2.87
259 260 4.322567 ACAGAATTCACTTGCTCTCTTCC 58.677 43.478 8.44 0.00 0.00 3.46
260 261 4.202398 ACAGAATTCACTTGCTCTCTTCCA 60.202 41.667 8.44 0.00 0.00 3.53
261 262 4.942483 CAGAATTCACTTGCTCTCTTCCAT 59.058 41.667 8.44 0.00 0.00 3.41
262 263 5.064962 CAGAATTCACTTGCTCTCTTCCATC 59.935 44.000 8.44 0.00 0.00 3.51
263 264 4.840716 ATTCACTTGCTCTCTTCCATCT 57.159 40.909 0.00 0.00 0.00 2.90
264 265 5.946942 ATTCACTTGCTCTCTTCCATCTA 57.053 39.130 0.00 0.00 0.00 1.98
265 266 4.727507 TCACTTGCTCTCTTCCATCTAC 57.272 45.455 0.00 0.00 0.00 2.59
266 267 4.089361 TCACTTGCTCTCTTCCATCTACA 58.911 43.478 0.00 0.00 0.00 2.74
267 268 4.528206 TCACTTGCTCTCTTCCATCTACAA 59.472 41.667 0.00 0.00 0.00 2.41
268 269 4.629200 CACTTGCTCTCTTCCATCTACAAC 59.371 45.833 0.00 0.00 0.00 3.32
269 270 3.895232 TGCTCTCTTCCATCTACAACC 57.105 47.619 0.00 0.00 0.00 3.77
270 271 2.166459 TGCTCTCTTCCATCTACAACCG 59.834 50.000 0.00 0.00 0.00 4.44
271 272 2.815478 CTCTCTTCCATCTACAACCGC 58.185 52.381 0.00 0.00 0.00 5.68
272 273 2.166459 CTCTCTTCCATCTACAACCGCA 59.834 50.000 0.00 0.00 0.00 5.69
273 274 2.094182 TCTCTTCCATCTACAACCGCAC 60.094 50.000 0.00 0.00 0.00 5.34
274 275 1.066430 TCTTCCATCTACAACCGCACC 60.066 52.381 0.00 0.00 0.00 5.01
275 276 0.687920 TTCCATCTACAACCGCACCA 59.312 50.000 0.00 0.00 0.00 4.17
276 277 0.249120 TCCATCTACAACCGCACCAG 59.751 55.000 0.00 0.00 0.00 4.00
277 278 0.249120 CCATCTACAACCGCACCAGA 59.751 55.000 0.00 0.00 0.00 3.86
278 279 1.338674 CCATCTACAACCGCACCAGAA 60.339 52.381 0.00 0.00 0.00 3.02
279 280 2.422597 CATCTACAACCGCACCAGAAA 58.577 47.619 0.00 0.00 0.00 2.52
280 281 1.873698 TCTACAACCGCACCAGAAAC 58.126 50.000 0.00 0.00 0.00 2.78
281 282 1.414919 TCTACAACCGCACCAGAAACT 59.585 47.619 0.00 0.00 0.00 2.66
282 283 1.798813 CTACAACCGCACCAGAAACTC 59.201 52.381 0.00 0.00 0.00 3.01
283 284 1.157870 ACAACCGCACCAGAAACTCG 61.158 55.000 0.00 0.00 0.00 4.18
284 285 2.251642 AACCGCACCAGAAACTCGC 61.252 57.895 0.00 0.00 0.00 5.03
285 286 3.423154 CCGCACCAGAAACTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
286 287 3.777925 CGCACCAGAAACTCGCCG 61.778 66.667 0.00 0.00 0.00 6.46
287 288 2.665185 GCACCAGAAACTCGCCGT 60.665 61.111 0.00 0.00 0.00 5.68
288 289 2.251642 GCACCAGAAACTCGCCGTT 61.252 57.895 0.00 0.00 37.47 4.44
289 290 1.569493 CACCAGAAACTCGCCGTTG 59.431 57.895 0.00 0.00 35.61 4.10
290 291 2.251642 ACCAGAAACTCGCCGTTGC 61.252 57.895 0.00 0.00 35.61 4.17
291 292 2.250939 CCAGAAACTCGCCGTTGCA 61.251 57.895 0.00 0.00 35.61 4.08
292 293 1.577328 CCAGAAACTCGCCGTTGCAT 61.577 55.000 0.00 0.00 35.61 3.96
293 294 0.179215 CAGAAACTCGCCGTTGCATC 60.179 55.000 0.00 0.00 35.61 3.91
294 295 1.225745 GAAACTCGCCGTTGCATCG 60.226 57.895 10.22 10.22 35.61 3.84
313 314 3.792047 CGTCGGCCACGTCGTCTA 61.792 66.667 16.51 0.00 44.35 2.59
314 315 2.202401 GTCGGCCACGTCGTCTAC 60.202 66.667 2.24 0.00 41.85 2.59
315 316 3.434319 TCGGCCACGTCGTCTACC 61.434 66.667 2.24 0.00 41.85 3.18
316 317 3.740397 CGGCCACGTCGTCTACCA 61.740 66.667 2.24 0.00 34.81 3.25
317 318 2.181021 GGCCACGTCGTCTACCAG 59.819 66.667 0.00 0.00 0.00 4.00
318 319 2.181021 GCCACGTCGTCTACCAGG 59.819 66.667 0.00 0.00 0.00 4.45
319 320 2.633509 GCCACGTCGTCTACCAGGT 61.634 63.158 0.00 0.00 0.00 4.00
320 321 1.962144 CCACGTCGTCTACCAGGTT 59.038 57.895 0.00 0.00 0.00 3.50
321 322 0.388134 CCACGTCGTCTACCAGGTTG 60.388 60.000 0.00 0.00 0.00 3.77
322 323 1.007336 CACGTCGTCTACCAGGTTGC 61.007 60.000 0.00 0.00 0.00 4.17
323 324 1.800315 CGTCGTCTACCAGGTTGCG 60.800 63.158 0.00 4.47 0.00 4.85
324 325 1.445582 GTCGTCTACCAGGTTGCGG 60.446 63.158 0.00 0.00 0.00 5.69
325 326 2.125673 CGTCTACCAGGTTGCGGG 60.126 66.667 0.00 0.00 0.00 6.13
326 327 2.436115 GTCTACCAGGTTGCGGGC 60.436 66.667 0.00 0.00 0.00 6.13
327 328 4.077184 TCTACCAGGTTGCGGGCG 62.077 66.667 0.00 0.00 0.00 6.13
328 329 4.388499 CTACCAGGTTGCGGGCGT 62.388 66.667 0.00 0.00 0.00 5.68
329 330 4.690719 TACCAGGTTGCGGGCGTG 62.691 66.667 0.00 0.00 0.00 5.34
346 347 4.329545 GGCGGTGGAGCAGACCAA 62.330 66.667 0.00 0.00 41.87 3.67
347 348 2.743928 GCGGTGGAGCAGACCAAG 60.744 66.667 0.00 0.00 41.87 3.61
348 349 2.743718 CGGTGGAGCAGACCAAGT 59.256 61.111 0.00 0.00 41.87 3.16
349 350 1.374758 CGGTGGAGCAGACCAAGTC 60.375 63.158 0.00 0.00 41.87 3.01
350 351 1.003233 GGTGGAGCAGACCAAGTCC 60.003 63.158 0.00 0.00 41.87 3.85
351 352 1.484444 GGTGGAGCAGACCAAGTCCT 61.484 60.000 0.00 0.00 41.87 3.85
352 353 0.321122 GTGGAGCAGACCAAGTCCTG 60.321 60.000 0.00 0.00 41.87 3.86
353 354 1.376553 GGAGCAGACCAAGTCCTGC 60.377 63.158 6.27 6.27 37.15 4.85
354 355 1.676384 GAGCAGACCAAGTCCTGCT 59.324 57.895 15.62 15.62 43.72 4.24
355 356 0.673022 GAGCAGACCAAGTCCTGCTG 60.673 60.000 19.80 0.00 42.38 4.41
356 357 2.331132 GCAGACCAAGTCCTGCTGC 61.331 63.158 0.00 0.00 44.11 5.25
357 358 2.031516 CAGACCAAGTCCTGCTGCG 61.032 63.158 0.00 0.00 32.18 5.18
358 359 2.743928 GACCAAGTCCTGCTGCGG 60.744 66.667 0.26 0.26 0.00 5.69
359 360 4.335647 ACCAAGTCCTGCTGCGGG 62.336 66.667 21.69 21.69 0.00 6.13
360 361 4.335647 CCAAGTCCTGCTGCGGGT 62.336 66.667 25.92 6.08 0.00 5.28
361 362 3.052082 CAAGTCCTGCTGCGGGTG 61.052 66.667 25.92 14.13 0.00 4.61
362 363 3.560251 AAGTCCTGCTGCGGGTGT 61.560 61.111 25.92 12.41 0.00 4.16
363 364 3.832237 AAGTCCTGCTGCGGGTGTG 62.832 63.158 25.92 1.66 0.00 3.82
386 387 4.785453 GGAGCAGCCCAAGTCCGG 62.785 72.222 0.00 0.00 0.00 5.14
404 405 3.186047 CATCGGTCGACGGCCAAC 61.186 66.667 20.17 0.00 44.45 3.77
405 406 3.687102 ATCGGTCGACGGCCAACA 61.687 61.111 20.17 1.29 44.45 3.33
406 407 3.014085 ATCGGTCGACGGCCAACAT 62.014 57.895 20.17 3.94 44.45 2.71
407 408 3.487202 CGGTCGACGGCCAACATG 61.487 66.667 20.17 0.00 39.42 3.21
408 409 3.124921 GGTCGACGGCCAACATGG 61.125 66.667 15.00 0.00 41.55 3.66
433 434 4.680237 CGGACCGCAGCACCAGAA 62.680 66.667 0.00 0.00 0.00 3.02
434 435 2.281484 GGACCGCAGCACCAGAAA 60.281 61.111 0.00 0.00 0.00 2.52
435 436 1.675641 GGACCGCAGCACCAGAAAT 60.676 57.895 0.00 0.00 0.00 2.17
436 437 1.244019 GGACCGCAGCACCAGAAATT 61.244 55.000 0.00 0.00 0.00 1.82
437 438 0.169009 GACCGCAGCACCAGAAATTC 59.831 55.000 0.00 0.00 0.00 2.17
438 439 0.250901 ACCGCAGCACCAGAAATTCT 60.251 50.000 0.00 0.00 0.00 2.40
439 440 0.169672 CCGCAGCACCAGAAATTCTG 59.830 55.000 15.64 15.64 43.91 3.02
440 441 0.455633 CGCAGCACCAGAAATTCTGC 60.456 55.000 17.03 7.48 42.98 4.26
441 442 0.886563 GCAGCACCAGAAATTCTGCT 59.113 50.000 17.03 9.68 42.98 4.24
442 443 1.271656 GCAGCACCAGAAATTCTGCTT 59.728 47.619 17.03 3.68 42.98 3.91
443 444 2.489329 GCAGCACCAGAAATTCTGCTTA 59.511 45.455 17.03 0.00 42.98 3.09
444 445 3.129988 GCAGCACCAGAAATTCTGCTTAT 59.870 43.478 17.03 0.89 42.98 1.73
445 446 4.732938 GCAGCACCAGAAATTCTGCTTATC 60.733 45.833 17.03 4.59 42.98 1.75
446 447 3.950395 AGCACCAGAAATTCTGCTTATCC 59.050 43.478 17.03 2.64 42.98 2.59
447 448 3.696051 GCACCAGAAATTCTGCTTATCCA 59.304 43.478 17.03 0.00 42.98 3.41
448 449 4.439289 GCACCAGAAATTCTGCTTATCCAC 60.439 45.833 17.03 0.00 42.98 4.02
449 450 3.941483 ACCAGAAATTCTGCTTATCCACG 59.059 43.478 17.03 3.40 42.98 4.94
450 451 3.941483 CCAGAAATTCTGCTTATCCACGT 59.059 43.478 17.03 0.00 42.98 4.49
451 452 4.396166 CCAGAAATTCTGCTTATCCACGTT 59.604 41.667 17.03 0.00 42.98 3.99
452 453 5.106157 CCAGAAATTCTGCTTATCCACGTTT 60.106 40.000 17.03 0.00 42.98 3.60
453 454 6.024049 CAGAAATTCTGCTTATCCACGTTTC 58.976 40.000 10.30 0.00 37.72 2.78
454 455 5.940470 AGAAATTCTGCTTATCCACGTTTCT 59.060 36.000 0.00 0.00 0.00 2.52
455 456 5.551760 AATTCTGCTTATCCACGTTTCTG 57.448 39.130 0.00 0.00 0.00 3.02
456 457 3.678056 TCTGCTTATCCACGTTTCTGT 57.322 42.857 0.00 0.00 0.00 3.41
457 458 4.002906 TCTGCTTATCCACGTTTCTGTT 57.997 40.909 0.00 0.00 0.00 3.16
458 459 3.745975 TCTGCTTATCCACGTTTCTGTTG 59.254 43.478 0.00 0.00 0.00 3.33
459 460 2.811431 TGCTTATCCACGTTTCTGTTGG 59.189 45.455 0.00 0.00 0.00 3.77
460 461 2.161609 GCTTATCCACGTTTCTGTTGGG 59.838 50.000 0.00 0.00 0.00 4.12
461 462 1.816074 TATCCACGTTTCTGTTGGGC 58.184 50.000 0.00 0.00 0.00 5.36
462 463 0.893727 ATCCACGTTTCTGTTGGGCC 60.894 55.000 0.00 0.00 0.00 5.80
463 464 1.826054 CCACGTTTCTGTTGGGCCA 60.826 57.895 0.00 0.00 0.00 5.36
464 465 1.178534 CCACGTTTCTGTTGGGCCAT 61.179 55.000 7.26 0.00 0.00 4.40
465 466 0.240945 CACGTTTCTGTTGGGCCATC 59.759 55.000 7.26 7.51 0.00 3.51
466 467 0.893727 ACGTTTCTGTTGGGCCATCC 60.894 55.000 7.26 1.11 0.00 3.51
467 468 0.893270 CGTTTCTGTTGGGCCATCCA 60.893 55.000 7.26 6.65 45.43 3.41
475 476 2.071502 TGGGCCATCCAAACGTAGT 58.928 52.632 0.00 0.00 43.84 2.73
492 493 6.272698 ACGTAGTTTTACTTTGTTACACGG 57.727 37.500 0.00 0.00 37.78 4.94
493 494 5.810074 ACGTAGTTTTACTTTGTTACACGGT 59.190 36.000 0.00 0.00 37.78 4.83
494 495 6.312672 ACGTAGTTTTACTTTGTTACACGGTT 59.687 34.615 0.00 0.00 37.78 4.44
495 496 7.489757 ACGTAGTTTTACTTTGTTACACGGTTA 59.510 33.333 0.00 0.00 37.78 2.85
496 497 7.998212 CGTAGTTTTACTTTGTTACACGGTTAG 59.002 37.037 0.00 0.00 0.00 2.34
497 498 9.030301 GTAGTTTTACTTTGTTACACGGTTAGA 57.970 33.333 0.00 0.00 0.00 2.10
498 499 8.667076 AGTTTTACTTTGTTACACGGTTAGAT 57.333 30.769 0.00 0.00 0.00 1.98
499 500 8.768019 AGTTTTACTTTGTTACACGGTTAGATC 58.232 33.333 0.00 0.00 0.00 2.75
500 501 8.550376 GTTTTACTTTGTTACACGGTTAGATCA 58.450 33.333 0.00 0.00 0.00 2.92
501 502 7.878477 TTACTTTGTTACACGGTTAGATCAG 57.122 36.000 0.00 0.00 0.00 2.90
502 503 6.092955 ACTTTGTTACACGGTTAGATCAGA 57.907 37.500 0.00 0.00 0.00 3.27
503 504 6.698380 ACTTTGTTACACGGTTAGATCAGAT 58.302 36.000 0.00 0.00 0.00 2.90
504 505 7.159372 ACTTTGTTACACGGTTAGATCAGATT 58.841 34.615 0.00 0.00 0.00 2.40
505 506 8.308931 ACTTTGTTACACGGTTAGATCAGATTA 58.691 33.333 0.00 0.00 0.00 1.75
506 507 8.470040 TTTGTTACACGGTTAGATCAGATTAC 57.530 34.615 0.00 0.00 0.00 1.89
507 508 6.260377 TGTTACACGGTTAGATCAGATTACG 58.740 40.000 0.00 0.00 0.00 3.18
508 509 4.303086 ACACGGTTAGATCAGATTACGG 57.697 45.455 0.00 0.00 0.00 4.02
509 510 3.067742 ACACGGTTAGATCAGATTACGGG 59.932 47.826 0.00 0.00 0.00 5.28
510 511 2.626743 ACGGTTAGATCAGATTACGGGG 59.373 50.000 0.00 0.00 0.00 5.73
511 512 2.889045 CGGTTAGATCAGATTACGGGGA 59.111 50.000 0.00 0.00 0.00 4.81
512 513 3.319972 CGGTTAGATCAGATTACGGGGAA 59.680 47.826 0.00 0.00 0.00 3.97
513 514 4.629092 GGTTAGATCAGATTACGGGGAAC 58.371 47.826 0.00 0.00 0.00 3.62
530 531 4.686839 GGAACCAGCTCTGATAAAACAC 57.313 45.455 0.00 0.00 0.00 3.32
531 532 3.440522 GGAACCAGCTCTGATAAAACACC 59.559 47.826 0.00 0.00 0.00 4.16
532 533 2.699954 ACCAGCTCTGATAAAACACCG 58.300 47.619 0.00 0.00 0.00 4.94
533 534 2.038557 ACCAGCTCTGATAAAACACCGT 59.961 45.455 0.00 0.00 0.00 4.83
534 535 3.259876 ACCAGCTCTGATAAAACACCGTA 59.740 43.478 0.00 0.00 0.00 4.02
535 536 4.081087 ACCAGCTCTGATAAAACACCGTAT 60.081 41.667 0.00 0.00 0.00 3.06
536 537 4.508124 CCAGCTCTGATAAAACACCGTATC 59.492 45.833 0.00 0.00 0.00 2.24
537 538 4.508124 CAGCTCTGATAAAACACCGTATCC 59.492 45.833 0.00 0.00 0.00 2.59
538 539 4.161565 AGCTCTGATAAAACACCGTATCCA 59.838 41.667 0.00 0.00 0.00 3.41
539 540 4.873827 GCTCTGATAAAACACCGTATCCAA 59.126 41.667 0.00 0.00 0.00 3.53
540 541 5.353123 GCTCTGATAAAACACCGTATCCAAA 59.647 40.000 0.00 0.00 0.00 3.28
541 542 6.674760 GCTCTGATAAAACACCGTATCCAAAC 60.675 42.308 0.00 0.00 0.00 2.93
542 543 6.231951 TCTGATAAAACACCGTATCCAAACA 58.768 36.000 0.00 0.00 0.00 2.83
543 544 6.711194 TCTGATAAAACACCGTATCCAAACAA 59.289 34.615 0.00 0.00 0.00 2.83
544 545 6.904498 TGATAAAACACCGTATCCAAACAAG 58.096 36.000 0.00 0.00 0.00 3.16
545 546 4.577834 AAAACACCGTATCCAAACAAGG 57.422 40.909 0.00 0.00 0.00 3.61
546 547 1.530323 ACACCGTATCCAAACAAGGC 58.470 50.000 0.00 0.00 0.00 4.35
1311 1411 1.375523 GTCCACCATCGCCGAGTTT 60.376 57.895 0.00 0.00 0.00 2.66
1801 3634 6.884295 TGGTGGGATTTGACTTGTAATAGAAG 59.116 38.462 0.00 0.00 0.00 2.85
1907 3794 4.487714 TGCTGGTTAGGTAATCAAGAGG 57.512 45.455 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.036875 GCCCTCTGTGTGCTTTACCT 59.963 55.000 0.00 0.00 0.00 3.08
2 3 0.250727 TGCCCTCTGTGTGCTTTACC 60.251 55.000 0.00 0.00 0.00 2.85
3 4 0.875059 GTGCCCTCTGTGTGCTTTAC 59.125 55.000 0.00 0.00 0.00 2.01
4 5 0.472044 TGTGCCCTCTGTGTGCTTTA 59.528 50.000 0.00 0.00 0.00 1.85
5 6 0.178981 ATGTGCCCTCTGTGTGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
6 7 0.692476 TATGTGCCCTCTGTGTGCTT 59.308 50.000 0.00 0.00 0.00 3.91
7 8 0.692476 TTATGTGCCCTCTGTGTGCT 59.308 50.000 0.00 0.00 0.00 4.40
8 9 1.755179 ATTATGTGCCCTCTGTGTGC 58.245 50.000 0.00 0.00 0.00 4.57
9 10 3.127548 GTGAATTATGTGCCCTCTGTGTG 59.872 47.826 0.00 0.00 0.00 3.82
10 11 3.009473 AGTGAATTATGTGCCCTCTGTGT 59.991 43.478 0.00 0.00 0.00 3.72
11 12 3.376234 CAGTGAATTATGTGCCCTCTGTG 59.624 47.826 0.00 0.00 0.00 3.66
12 13 3.009473 ACAGTGAATTATGTGCCCTCTGT 59.991 43.478 0.00 0.00 0.00 3.41
13 14 3.614092 ACAGTGAATTATGTGCCCTCTG 58.386 45.455 0.00 0.00 0.00 3.35
14 15 5.455326 GGATACAGTGAATTATGTGCCCTCT 60.455 44.000 0.00 0.00 0.00 3.69
15 16 4.757149 GGATACAGTGAATTATGTGCCCTC 59.243 45.833 0.00 0.00 0.00 4.30
16 17 4.165950 TGGATACAGTGAATTATGTGCCCT 59.834 41.667 0.00 0.00 46.17 5.19
17 18 4.460263 TGGATACAGTGAATTATGTGCCC 58.540 43.478 0.00 3.45 46.17 5.36
33 34 7.277539 GCTTCTATCTGATGCACTTATGGATAC 59.722 40.741 0.00 0.00 43.03 2.24
34 35 7.038799 TGCTTCTATCTGATGCACTTATGGATA 60.039 37.037 0.00 0.00 46.47 2.59
35 36 6.171921 GCTTCTATCTGATGCACTTATGGAT 58.828 40.000 0.00 0.00 43.03 3.41
36 37 5.070847 TGCTTCTATCTGATGCACTTATGGA 59.929 40.000 0.00 0.00 46.47 3.41
37 38 5.303165 TGCTTCTATCTGATGCACTTATGG 58.697 41.667 0.00 0.00 46.47 2.74
45 46 4.815308 ACTGTTCATGCTTCTATCTGATGC 59.185 41.667 0.00 0.00 43.58 3.91
46 47 6.922247 AACTGTTCATGCTTCTATCTGATG 57.078 37.500 0.00 0.00 0.00 3.07
47 48 6.183360 GCAAACTGTTCATGCTTCTATCTGAT 60.183 38.462 9.38 0.00 37.12 2.90
48 49 5.122869 GCAAACTGTTCATGCTTCTATCTGA 59.877 40.000 9.38 0.00 37.12 3.27
49 50 5.106436 TGCAAACTGTTCATGCTTCTATCTG 60.106 40.000 15.77 0.00 40.66 2.90
50 51 5.005740 TGCAAACTGTTCATGCTTCTATCT 58.994 37.500 15.77 0.00 40.66 1.98
51 52 5.300969 TGCAAACTGTTCATGCTTCTATC 57.699 39.130 15.77 0.00 40.66 2.08
52 53 5.710513 TTGCAAACTGTTCATGCTTCTAT 57.289 34.783 15.77 0.00 40.66 1.98
53 54 5.299028 TCTTTGCAAACTGTTCATGCTTCTA 59.701 36.000 8.05 0.00 40.66 2.10
54 55 4.098349 TCTTTGCAAACTGTTCATGCTTCT 59.902 37.500 8.05 0.00 40.66 2.85
55 56 4.207841 GTCTTTGCAAACTGTTCATGCTTC 59.792 41.667 8.05 2.26 40.66 3.86
56 57 4.114794 GTCTTTGCAAACTGTTCATGCTT 58.885 39.130 8.05 0.00 40.66 3.91
57 58 3.491447 GGTCTTTGCAAACTGTTCATGCT 60.491 43.478 8.05 0.00 40.66 3.79
58 59 2.796593 GGTCTTTGCAAACTGTTCATGC 59.203 45.455 8.05 9.65 40.45 4.06
59 60 4.044336 TGGTCTTTGCAAACTGTTCATG 57.956 40.909 8.05 0.00 0.00 3.07
60 61 4.432712 GTTGGTCTTTGCAAACTGTTCAT 58.567 39.130 8.05 0.00 0.00 2.57
61 62 3.671971 CGTTGGTCTTTGCAAACTGTTCA 60.672 43.478 8.05 0.17 0.00 3.18
62 63 2.851824 CGTTGGTCTTTGCAAACTGTTC 59.148 45.455 8.05 0.00 0.00 3.18
63 64 2.490115 TCGTTGGTCTTTGCAAACTGTT 59.510 40.909 8.05 0.00 0.00 3.16
64 65 2.088423 TCGTTGGTCTTTGCAAACTGT 58.912 42.857 8.05 0.00 0.00 3.55
65 66 2.842208 TCGTTGGTCTTTGCAAACTG 57.158 45.000 8.05 0.00 0.00 3.16
66 67 2.490115 TGTTCGTTGGTCTTTGCAAACT 59.510 40.909 8.05 0.00 0.00 2.66
67 68 2.869897 TGTTCGTTGGTCTTTGCAAAC 58.130 42.857 8.05 0.00 0.00 2.93
68 69 3.577649 TTGTTCGTTGGTCTTTGCAAA 57.422 38.095 12.14 12.14 0.00 3.68
69 70 3.191581 TCTTTGTTCGTTGGTCTTTGCAA 59.808 39.130 0.00 0.00 0.00 4.08
70 71 2.750166 TCTTTGTTCGTTGGTCTTTGCA 59.250 40.909 0.00 0.00 0.00 4.08
71 72 3.414549 TCTTTGTTCGTTGGTCTTTGC 57.585 42.857 0.00 0.00 0.00 3.68
72 73 6.033341 TCAAATCTTTGTTCGTTGGTCTTTG 58.967 36.000 2.82 0.00 39.18 2.77
73 74 6.202516 TCAAATCTTTGTTCGTTGGTCTTT 57.797 33.333 2.82 0.00 39.18 2.52
74 75 5.828299 TCAAATCTTTGTTCGTTGGTCTT 57.172 34.783 2.82 0.00 39.18 3.01
75 76 5.828299 TTCAAATCTTTGTTCGTTGGTCT 57.172 34.783 2.82 0.00 39.18 3.85
76 77 6.262601 TCTTTCAAATCTTTGTTCGTTGGTC 58.737 36.000 2.82 0.00 39.18 4.02
77 78 6.202516 TCTTTCAAATCTTTGTTCGTTGGT 57.797 33.333 2.82 0.00 39.18 3.67
78 79 7.518731 TTTCTTTCAAATCTTTGTTCGTTGG 57.481 32.000 2.82 0.00 39.18 3.77
79 80 8.431593 TGTTTTCTTTCAAATCTTTGTTCGTTG 58.568 29.630 2.82 0.00 39.18 4.10
80 81 8.527567 TGTTTTCTTTCAAATCTTTGTTCGTT 57.472 26.923 2.82 0.00 39.18 3.85
81 82 8.026607 TCTGTTTTCTTTCAAATCTTTGTTCGT 58.973 29.630 2.82 0.00 39.18 3.85
82 83 8.393395 TCTGTTTTCTTTCAAATCTTTGTTCG 57.607 30.769 2.82 0.00 39.18 3.95
83 84 8.811378 CCTCTGTTTTCTTTCAAATCTTTGTTC 58.189 33.333 2.82 0.00 39.18 3.18
84 85 8.314021 ACCTCTGTTTTCTTTCAAATCTTTGTT 58.686 29.630 2.82 0.00 39.18 2.83
85 86 7.761249 CACCTCTGTTTTCTTTCAAATCTTTGT 59.239 33.333 2.82 0.00 39.18 2.83
86 87 7.975616 TCACCTCTGTTTTCTTTCAAATCTTTG 59.024 33.333 0.00 0.00 39.48 2.77
87 88 8.066612 TCACCTCTGTTTTCTTTCAAATCTTT 57.933 30.769 0.00 0.00 0.00 2.52
88 89 7.645058 TCACCTCTGTTTTCTTTCAAATCTT 57.355 32.000 0.00 0.00 0.00 2.40
89 90 7.201857 CCTTCACCTCTGTTTTCTTTCAAATCT 60.202 37.037 0.00 0.00 0.00 2.40
90 91 6.920210 CCTTCACCTCTGTTTTCTTTCAAATC 59.080 38.462 0.00 0.00 0.00 2.17
91 92 6.683861 GCCTTCACCTCTGTTTTCTTTCAAAT 60.684 38.462 0.00 0.00 0.00 2.32
92 93 5.394115 GCCTTCACCTCTGTTTTCTTTCAAA 60.394 40.000 0.00 0.00 0.00 2.69
93 94 4.097892 GCCTTCACCTCTGTTTTCTTTCAA 59.902 41.667 0.00 0.00 0.00 2.69
94 95 3.632145 GCCTTCACCTCTGTTTTCTTTCA 59.368 43.478 0.00 0.00 0.00 2.69
95 96 3.304057 CGCCTTCACCTCTGTTTTCTTTC 60.304 47.826 0.00 0.00 0.00 2.62
96 97 2.618709 CGCCTTCACCTCTGTTTTCTTT 59.381 45.455 0.00 0.00 0.00 2.52
97 98 2.222027 CGCCTTCACCTCTGTTTTCTT 58.778 47.619 0.00 0.00 0.00 2.52
98 99 1.543429 CCGCCTTCACCTCTGTTTTCT 60.543 52.381 0.00 0.00 0.00 2.52
99 100 0.875059 CCGCCTTCACCTCTGTTTTC 59.125 55.000 0.00 0.00 0.00 2.29
100 101 0.472471 TCCGCCTTCACCTCTGTTTT 59.528 50.000 0.00 0.00 0.00 2.43
101 102 0.035458 CTCCGCCTTCACCTCTGTTT 59.965 55.000 0.00 0.00 0.00 2.83
102 103 1.674057 CTCCGCCTTCACCTCTGTT 59.326 57.895 0.00 0.00 0.00 3.16
103 104 2.286523 CCTCCGCCTTCACCTCTGT 61.287 63.158 0.00 0.00 0.00 3.41
104 105 1.333636 ATCCTCCGCCTTCACCTCTG 61.334 60.000 0.00 0.00 0.00 3.35
105 106 1.002274 ATCCTCCGCCTTCACCTCT 59.998 57.895 0.00 0.00 0.00 3.69
106 107 1.144936 CATCCTCCGCCTTCACCTC 59.855 63.158 0.00 0.00 0.00 3.85
107 108 1.613630 ACATCCTCCGCCTTCACCT 60.614 57.895 0.00 0.00 0.00 4.00
108 109 1.450312 CACATCCTCCGCCTTCACC 60.450 63.158 0.00 0.00 0.00 4.02
109 110 1.450312 CCACATCCTCCGCCTTCAC 60.450 63.158 0.00 0.00 0.00 3.18
110 111 1.612146 TCCACATCCTCCGCCTTCA 60.612 57.895 0.00 0.00 0.00 3.02
111 112 1.153349 GTCCACATCCTCCGCCTTC 60.153 63.158 0.00 0.00 0.00 3.46
112 113 1.918293 TGTCCACATCCTCCGCCTT 60.918 57.895 0.00 0.00 0.00 4.35
113 114 2.284625 TGTCCACATCCTCCGCCT 60.285 61.111 0.00 0.00 0.00 5.52
114 115 2.125106 GTGTCCACATCCTCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
115 116 2.662596 TGTGTCCACATCCTCCGC 59.337 61.111 0.00 0.00 36.21 5.54
123 124 2.209690 TCGAGGTCTATGTGTCCACA 57.790 50.000 2.09 2.09 46.44 4.17
124 125 2.753452 TCTTCGAGGTCTATGTGTCCAC 59.247 50.000 0.00 0.00 0.00 4.02
125 126 3.017442 CTCTTCGAGGTCTATGTGTCCA 58.983 50.000 0.00 0.00 0.00 4.02
126 127 2.359531 CCTCTTCGAGGTCTATGTGTCC 59.640 54.545 1.71 0.00 44.25 4.02
127 128 3.701532 CCTCTTCGAGGTCTATGTGTC 57.298 52.381 1.71 0.00 44.25 3.67
138 139 2.411290 GGCGAGCTCCTCTTCGAG 59.589 66.667 8.47 0.00 0.00 4.04
139 140 3.509757 CGGCGAGCTCCTCTTCGA 61.510 66.667 8.47 0.00 0.00 3.71
140 141 4.560856 CCGGCGAGCTCCTCTTCG 62.561 72.222 9.30 5.11 0.00 3.79
141 142 4.214327 CCCGGCGAGCTCCTCTTC 62.214 72.222 9.30 0.00 0.00 2.87
149 150 4.424566 TACAACGACCCGGCGAGC 62.425 66.667 9.30 0.00 34.83 5.03
150 151 2.001361 ATCTACAACGACCCGGCGAG 62.001 60.000 9.30 0.00 34.83 5.03
151 152 0.747644 TATCTACAACGACCCGGCGA 60.748 55.000 9.30 0.00 34.83 5.54
152 153 0.101040 TTATCTACAACGACCCGGCG 59.899 55.000 0.00 0.00 37.29 6.46
153 154 1.135024 TGTTATCTACAACGACCCGGC 60.135 52.381 0.00 0.00 32.64 6.13
154 155 2.805845 CTGTTATCTACAACGACCCGG 58.194 52.381 0.00 0.00 36.02 5.73
155 156 2.190981 GCTGTTATCTACAACGACCCG 58.809 52.381 0.00 0.00 36.02 5.28
156 157 3.241067 TGCTGTTATCTACAACGACCC 57.759 47.619 0.00 0.00 36.02 4.46
157 158 4.430007 TCATGCTGTTATCTACAACGACC 58.570 43.478 0.00 0.00 36.02 4.79
158 159 5.805486 TCTTCATGCTGTTATCTACAACGAC 59.195 40.000 0.00 0.00 36.02 4.34
159 160 5.961272 TCTTCATGCTGTTATCTACAACGA 58.039 37.500 0.00 0.00 36.02 3.85
160 161 6.036470 TCTCTTCATGCTGTTATCTACAACG 58.964 40.000 0.00 0.00 36.02 4.10
161 162 6.019156 GCTCTCTTCATGCTGTTATCTACAAC 60.019 42.308 0.00 0.00 36.02 3.32
162 163 6.045318 GCTCTCTTCATGCTGTTATCTACAA 58.955 40.000 0.00 0.00 36.02 2.41
163 164 5.595885 GCTCTCTTCATGCTGTTATCTACA 58.404 41.667 0.00 0.00 34.95 2.74
164 165 4.679197 CGCTCTCTTCATGCTGTTATCTAC 59.321 45.833 0.00 0.00 0.00 2.59
165 166 4.339530 ACGCTCTCTTCATGCTGTTATCTA 59.660 41.667 0.00 0.00 0.00 1.98
166 167 3.131933 ACGCTCTCTTCATGCTGTTATCT 59.868 43.478 0.00 0.00 0.00 1.98
167 168 3.452474 ACGCTCTCTTCATGCTGTTATC 58.548 45.455 0.00 0.00 0.00 1.75
168 169 3.533606 ACGCTCTCTTCATGCTGTTAT 57.466 42.857 0.00 0.00 0.00 1.89
169 170 2.995939 CAACGCTCTCTTCATGCTGTTA 59.004 45.455 0.00 0.00 0.00 2.41
170 171 1.802960 CAACGCTCTCTTCATGCTGTT 59.197 47.619 0.00 0.00 0.00 3.16
171 172 1.436600 CAACGCTCTCTTCATGCTGT 58.563 50.000 0.00 0.00 0.00 4.40
172 173 0.096628 GCAACGCTCTCTTCATGCTG 59.903 55.000 0.00 0.00 0.00 4.41
173 174 1.023513 GGCAACGCTCTCTTCATGCT 61.024 55.000 0.00 0.00 34.37 3.79
174 175 1.300971 TGGCAACGCTCTCTTCATGC 61.301 55.000 0.00 0.00 42.51 4.06
175 176 0.725686 CTGGCAACGCTCTCTTCATG 59.274 55.000 0.00 0.00 42.51 3.07
176 177 0.392193 CCTGGCAACGCTCTCTTCAT 60.392 55.000 0.00 0.00 42.51 2.57
177 178 1.004560 CCTGGCAACGCTCTCTTCA 60.005 57.895 0.00 0.00 42.51 3.02
178 179 2.394563 GCCTGGCAACGCTCTCTTC 61.395 63.158 15.17 0.00 42.51 2.87
179 180 2.359230 GCCTGGCAACGCTCTCTT 60.359 61.111 15.17 0.00 42.51 2.85
180 181 3.630013 TGCCTGGCAACGCTCTCT 61.630 61.111 21.08 0.00 34.76 3.10
181 182 3.426568 GTGCCTGGCAACGCTCTC 61.427 66.667 25.23 5.06 41.47 3.20
195 196 0.036022 AGAAGTGAGAGGCTTGGTGC 59.964 55.000 0.00 0.00 41.94 5.01
196 197 1.671261 CGAGAAGTGAGAGGCTTGGTG 60.671 57.143 0.00 0.00 0.00 4.17
197 198 0.605589 CGAGAAGTGAGAGGCTTGGT 59.394 55.000 0.00 0.00 0.00 3.67
198 199 0.739112 GCGAGAAGTGAGAGGCTTGG 60.739 60.000 0.00 0.00 0.00 3.61
199 200 0.739112 GGCGAGAAGTGAGAGGCTTG 60.739 60.000 0.00 0.00 0.00 4.01
200 201 1.594310 GGCGAGAAGTGAGAGGCTT 59.406 57.895 0.00 0.00 0.00 4.35
201 202 2.705821 CGGCGAGAAGTGAGAGGCT 61.706 63.158 0.00 0.00 0.00 4.58
202 203 2.202676 CGGCGAGAAGTGAGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
203 204 1.137825 GACGGCGAGAAGTGAGAGG 59.862 63.158 16.62 0.00 0.00 3.69
204 205 1.226156 CGACGGCGAGAAGTGAGAG 60.226 63.158 16.62 0.00 40.82 3.20
205 206 1.670083 TCGACGGCGAGAAGTGAGA 60.670 57.895 10.67 0.00 42.51 3.27
206 207 2.868196 TCGACGGCGAGAAGTGAG 59.132 61.111 10.67 0.00 42.51 3.51
218 219 3.164011 GCGACCGTGAGTTCGACG 61.164 66.667 0.00 0.00 36.56 5.12
219 220 1.659335 TTGCGACCGTGAGTTCGAC 60.659 57.895 0.00 0.00 0.00 4.20
220 221 1.659335 GTTGCGACCGTGAGTTCGA 60.659 57.895 0.00 0.00 0.00 3.71
221 222 1.876453 CTGTTGCGACCGTGAGTTCG 61.876 60.000 0.45 0.00 0.00 3.95
222 223 0.596600 TCTGTTGCGACCGTGAGTTC 60.597 55.000 0.45 0.00 0.00 3.01
223 224 0.179094 TTCTGTTGCGACCGTGAGTT 60.179 50.000 0.45 0.00 0.00 3.01
224 225 0.033504 ATTCTGTTGCGACCGTGAGT 59.966 50.000 0.45 0.00 0.00 3.41
225 226 1.126846 GAATTCTGTTGCGACCGTGAG 59.873 52.381 0.45 0.00 0.00 3.51
226 227 1.144969 GAATTCTGTTGCGACCGTGA 58.855 50.000 0.45 0.00 0.00 4.35
227 228 0.865111 TGAATTCTGTTGCGACCGTG 59.135 50.000 7.05 0.00 0.00 4.94
228 229 0.865769 GTGAATTCTGTTGCGACCGT 59.134 50.000 7.05 0.00 0.00 4.83
229 230 1.148310 AGTGAATTCTGTTGCGACCG 58.852 50.000 7.05 0.00 0.00 4.79
230 231 2.918131 GCAAGTGAATTCTGTTGCGACC 60.918 50.000 21.69 5.35 36.28 4.79
231 232 2.310577 GCAAGTGAATTCTGTTGCGAC 58.689 47.619 21.69 0.00 36.28 5.19
232 233 2.686558 GCAAGTGAATTCTGTTGCGA 57.313 45.000 21.69 0.00 36.28 5.10
234 235 3.501445 AGAGAGCAAGTGAATTCTGTTGC 59.499 43.478 25.65 25.65 44.60 4.17
235 236 5.334724 GGAAGAGAGCAAGTGAATTCTGTTG 60.335 44.000 7.05 10.81 0.00 3.33
236 237 4.759183 GGAAGAGAGCAAGTGAATTCTGTT 59.241 41.667 7.05 0.00 0.00 3.16
237 238 4.202398 TGGAAGAGAGCAAGTGAATTCTGT 60.202 41.667 7.05 0.00 0.00 3.41
238 239 4.321718 TGGAAGAGAGCAAGTGAATTCTG 58.678 43.478 7.05 0.00 0.00 3.02
239 240 4.630644 TGGAAGAGAGCAAGTGAATTCT 57.369 40.909 7.05 0.00 0.00 2.40
240 241 5.184711 AGATGGAAGAGAGCAAGTGAATTC 58.815 41.667 0.00 0.00 0.00 2.17
241 242 5.176741 AGATGGAAGAGAGCAAGTGAATT 57.823 39.130 0.00 0.00 0.00 2.17
242 243 4.840716 AGATGGAAGAGAGCAAGTGAAT 57.159 40.909 0.00 0.00 0.00 2.57
243 244 4.528206 TGTAGATGGAAGAGAGCAAGTGAA 59.472 41.667 0.00 0.00 0.00 3.18
244 245 4.089361 TGTAGATGGAAGAGAGCAAGTGA 58.911 43.478 0.00 0.00 0.00 3.41
245 246 4.462508 TGTAGATGGAAGAGAGCAAGTG 57.537 45.455 0.00 0.00 0.00 3.16
246 247 4.323104 GGTTGTAGATGGAAGAGAGCAAGT 60.323 45.833 0.00 0.00 0.00 3.16
247 248 4.187694 GGTTGTAGATGGAAGAGAGCAAG 58.812 47.826 0.00 0.00 0.00 4.01
248 249 3.368427 CGGTTGTAGATGGAAGAGAGCAA 60.368 47.826 0.00 0.00 0.00 3.91
249 250 2.166459 CGGTTGTAGATGGAAGAGAGCA 59.834 50.000 0.00 0.00 0.00 4.26
250 251 2.815478 CGGTTGTAGATGGAAGAGAGC 58.185 52.381 0.00 0.00 0.00 4.09
251 252 2.166459 TGCGGTTGTAGATGGAAGAGAG 59.834 50.000 0.00 0.00 0.00 3.20
252 253 2.094182 GTGCGGTTGTAGATGGAAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
253 254 2.271800 GTGCGGTTGTAGATGGAAGAG 58.728 52.381 0.00 0.00 0.00 2.85
254 255 1.066430 GGTGCGGTTGTAGATGGAAGA 60.066 52.381 0.00 0.00 0.00 2.87
255 256 1.338674 TGGTGCGGTTGTAGATGGAAG 60.339 52.381 0.00 0.00 0.00 3.46
256 257 0.687920 TGGTGCGGTTGTAGATGGAA 59.312 50.000 0.00 0.00 0.00 3.53
257 258 0.249120 CTGGTGCGGTTGTAGATGGA 59.751 55.000 0.00 0.00 0.00 3.41
258 259 0.249120 TCTGGTGCGGTTGTAGATGG 59.751 55.000 0.00 0.00 0.00 3.51
259 260 2.093306 TTCTGGTGCGGTTGTAGATG 57.907 50.000 0.00 0.00 0.00 2.90
260 261 2.038557 AGTTTCTGGTGCGGTTGTAGAT 59.961 45.455 0.00 0.00 0.00 1.98
261 262 1.414919 AGTTTCTGGTGCGGTTGTAGA 59.585 47.619 0.00 0.00 0.00 2.59
262 263 1.798813 GAGTTTCTGGTGCGGTTGTAG 59.201 52.381 0.00 0.00 0.00 2.74
263 264 1.870580 CGAGTTTCTGGTGCGGTTGTA 60.871 52.381 0.00 0.00 0.00 2.41
264 265 1.157870 CGAGTTTCTGGTGCGGTTGT 61.158 55.000 0.00 0.00 0.00 3.32
265 266 1.569493 CGAGTTTCTGGTGCGGTTG 59.431 57.895 0.00 0.00 0.00 3.77
266 267 2.251642 GCGAGTTTCTGGTGCGGTT 61.252 57.895 0.00 0.00 0.00 4.44
267 268 2.665185 GCGAGTTTCTGGTGCGGT 60.665 61.111 0.00 0.00 0.00 5.68
268 269 3.423154 GGCGAGTTTCTGGTGCGG 61.423 66.667 0.00 0.00 0.00 5.69
269 270 3.777925 CGGCGAGTTTCTGGTGCG 61.778 66.667 0.00 0.00 0.00 5.34
270 271 2.251642 AACGGCGAGTTTCTGGTGC 61.252 57.895 16.62 0.00 40.88 5.01
271 272 1.569493 CAACGGCGAGTTTCTGGTG 59.431 57.895 16.62 0.00 42.02 4.17
272 273 2.251642 GCAACGGCGAGTTTCTGGT 61.252 57.895 16.62 0.00 42.02 4.00
273 274 1.577328 ATGCAACGGCGAGTTTCTGG 61.577 55.000 16.62 0.00 45.35 3.86
274 275 0.179215 GATGCAACGGCGAGTTTCTG 60.179 55.000 16.62 1.68 45.35 3.02
275 276 1.626654 CGATGCAACGGCGAGTTTCT 61.627 55.000 16.62 0.00 45.35 2.52
276 277 1.225745 CGATGCAACGGCGAGTTTC 60.226 57.895 16.62 2.66 45.35 2.78
277 278 2.677003 CCGATGCAACGGCGAGTTT 61.677 57.895 23.01 0.00 46.20 2.66
278 279 3.118454 CCGATGCAACGGCGAGTT 61.118 61.111 23.01 0.00 46.20 3.01
297 298 2.202401 GTAGACGACGTGGCCGAC 60.202 66.667 4.58 0.00 37.88 4.79
298 299 3.434319 GGTAGACGACGTGGCCGA 61.434 66.667 4.58 0.00 37.88 5.54
299 300 3.678717 CTGGTAGACGACGTGGCCG 62.679 68.421 4.58 0.00 40.83 6.13
300 301 2.181021 CTGGTAGACGACGTGGCC 59.819 66.667 4.58 5.14 0.00 5.36
301 302 2.151049 AACCTGGTAGACGACGTGGC 62.151 60.000 4.58 0.00 0.00 5.01
302 303 0.388134 CAACCTGGTAGACGACGTGG 60.388 60.000 4.58 0.99 0.00 4.94
303 304 1.007336 GCAACCTGGTAGACGACGTG 61.007 60.000 4.58 0.00 0.00 4.49
304 305 1.288127 GCAACCTGGTAGACGACGT 59.712 57.895 0.00 0.00 0.00 4.34
305 306 1.800315 CGCAACCTGGTAGACGACG 60.800 63.158 0.00 0.00 0.00 5.12
306 307 1.445582 CCGCAACCTGGTAGACGAC 60.446 63.158 15.12 0.00 0.00 4.34
307 308 2.642254 CCCGCAACCTGGTAGACGA 61.642 63.158 15.12 0.00 0.00 4.20
308 309 2.125673 CCCGCAACCTGGTAGACG 60.126 66.667 0.00 4.36 0.00 4.18
309 310 2.436115 GCCCGCAACCTGGTAGAC 60.436 66.667 0.00 0.00 0.00 2.59
310 311 4.077184 CGCCCGCAACCTGGTAGA 62.077 66.667 0.00 0.00 0.00 2.59
311 312 4.388499 ACGCCCGCAACCTGGTAG 62.388 66.667 0.00 0.00 0.00 3.18
312 313 4.690719 CACGCCCGCAACCTGGTA 62.691 66.667 0.00 0.00 0.00 3.25
329 330 4.329545 TTGGTCTGCTCCACCGCC 62.330 66.667 0.00 0.00 37.20 6.13
330 331 2.743928 CTTGGTCTGCTCCACCGC 60.744 66.667 0.00 0.00 37.20 5.68
331 332 1.374758 GACTTGGTCTGCTCCACCG 60.375 63.158 0.00 0.00 37.20 4.94
332 333 1.003233 GGACTTGGTCTGCTCCACC 60.003 63.158 0.00 0.00 37.20 4.61
333 334 0.321122 CAGGACTTGGTCTGCTCCAC 60.321 60.000 0.00 0.00 37.20 4.02
334 335 2.061220 CAGGACTTGGTCTGCTCCA 58.939 57.895 0.00 0.00 35.49 3.86
335 336 1.376553 GCAGGACTTGGTCTGCTCC 60.377 63.158 7.92 0.00 35.49 4.70
336 337 0.673022 CAGCAGGACTTGGTCTGCTC 60.673 60.000 13.96 0.00 41.36 4.26
337 338 1.374190 CAGCAGGACTTGGTCTGCT 59.626 57.895 11.47 11.47 42.75 4.24
338 339 2.331132 GCAGCAGGACTTGGTCTGC 61.331 63.158 7.17 7.17 42.46 4.26
339 340 2.031516 CGCAGCAGGACTTGGTCTG 61.032 63.158 0.00 0.00 34.69 3.51
340 341 2.345244 CGCAGCAGGACTTGGTCT 59.655 61.111 0.00 0.00 34.69 3.85
341 342 2.743928 CCGCAGCAGGACTTGGTC 60.744 66.667 0.00 0.00 34.69 4.02
342 343 4.335647 CCCGCAGCAGGACTTGGT 62.336 66.667 4.99 0.00 38.24 3.67
343 344 4.335647 ACCCGCAGCAGGACTTGG 62.336 66.667 0.10 0.00 0.00 3.61
344 345 3.052082 CACCCGCAGCAGGACTTG 61.052 66.667 0.10 0.00 0.00 3.16
345 346 3.560251 ACACCCGCAGCAGGACTT 61.560 61.111 0.10 0.00 0.00 3.01
346 347 4.320456 CACACCCGCAGCAGGACT 62.320 66.667 0.10 0.00 0.00 3.85
369 370 4.785453 CCGGACTTGGGCTGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
387 388 3.186047 GTTGGCCGTCGACCGATG 61.186 66.667 10.58 4.76 39.56 3.84
388 389 3.014085 ATGTTGGCCGTCGACCGAT 62.014 57.895 10.58 0.00 39.56 4.18
389 390 3.687102 ATGTTGGCCGTCGACCGA 61.687 61.111 10.58 0.00 39.56 4.69
390 391 3.487202 CATGTTGGCCGTCGACCG 61.487 66.667 10.58 4.53 0.00 4.79
391 392 3.124921 CCATGTTGGCCGTCGACC 61.125 66.667 10.58 0.00 0.00 4.79
416 417 4.680237 TTCTGGTGCTGCGGTCCG 62.680 66.667 6.99 6.99 0.00 4.79
417 418 1.244019 AATTTCTGGTGCTGCGGTCC 61.244 55.000 0.00 0.00 0.00 4.46
418 419 0.169009 GAATTTCTGGTGCTGCGGTC 59.831 55.000 0.00 0.00 0.00 4.79
419 420 0.250901 AGAATTTCTGGTGCTGCGGT 60.251 50.000 0.00 0.00 0.00 5.68
420 421 0.169672 CAGAATTTCTGGTGCTGCGG 59.830 55.000 17.09 0.00 40.71 5.69
421 422 0.455633 GCAGAATTTCTGGTGCTGCG 60.456 55.000 24.09 0.91 44.43 5.18
422 423 3.413522 GCAGAATTTCTGGTGCTGC 57.586 52.632 24.09 8.99 44.43 5.25
428 429 3.941483 ACGTGGATAAGCAGAATTTCTGG 59.059 43.478 24.09 9.46 44.43 3.86
429 430 5.551760 AACGTGGATAAGCAGAATTTCTG 57.448 39.130 19.92 19.92 46.90 3.02
430 431 5.940470 AGAAACGTGGATAAGCAGAATTTCT 59.060 36.000 0.00 0.00 0.00 2.52
431 432 6.024049 CAGAAACGTGGATAAGCAGAATTTC 58.976 40.000 0.00 0.00 0.00 2.17
432 433 5.473504 ACAGAAACGTGGATAAGCAGAATTT 59.526 36.000 0.00 0.00 0.00 1.82
433 434 5.003804 ACAGAAACGTGGATAAGCAGAATT 58.996 37.500 0.00 0.00 0.00 2.17
434 435 4.579869 ACAGAAACGTGGATAAGCAGAAT 58.420 39.130 0.00 0.00 0.00 2.40
435 436 4.002906 ACAGAAACGTGGATAAGCAGAA 57.997 40.909 0.00 0.00 0.00 3.02
436 437 3.678056 ACAGAAACGTGGATAAGCAGA 57.322 42.857 0.00 0.00 0.00 4.26
437 438 3.120199 CCAACAGAAACGTGGATAAGCAG 60.120 47.826 0.00 0.00 0.00 4.24
438 439 2.811431 CCAACAGAAACGTGGATAAGCA 59.189 45.455 0.00 0.00 0.00 3.91
439 440 2.161609 CCCAACAGAAACGTGGATAAGC 59.838 50.000 0.00 0.00 0.00 3.09
440 441 2.161609 GCCCAACAGAAACGTGGATAAG 59.838 50.000 0.00 0.00 0.00 1.73
441 442 2.156098 GCCCAACAGAAACGTGGATAA 58.844 47.619 0.00 0.00 0.00 1.75
442 443 1.612199 GGCCCAACAGAAACGTGGATA 60.612 52.381 0.00 0.00 0.00 2.59
443 444 0.893727 GGCCCAACAGAAACGTGGAT 60.894 55.000 0.00 0.00 0.00 3.41
444 445 1.527380 GGCCCAACAGAAACGTGGA 60.527 57.895 0.00 0.00 0.00 4.02
445 446 1.178534 ATGGCCCAACAGAAACGTGG 61.179 55.000 0.00 0.00 0.00 4.94
446 447 0.240945 GATGGCCCAACAGAAACGTG 59.759 55.000 0.00 0.00 0.00 4.49
447 448 0.893727 GGATGGCCCAACAGAAACGT 60.894 55.000 0.00 0.00 34.14 3.99
448 449 0.893270 TGGATGGCCCAACAGAAACG 60.893 55.000 0.00 0.00 43.29 3.60
449 450 3.050089 TGGATGGCCCAACAGAAAC 57.950 52.632 0.00 0.00 43.29 2.78
457 458 0.402504 AACTACGTTTGGATGGCCCA 59.597 50.000 0.00 0.00 44.93 5.36
458 459 1.541379 AAACTACGTTTGGATGGCCC 58.459 50.000 0.00 0.00 34.23 5.80
459 460 3.754850 AGTAAAACTACGTTTGGATGGCC 59.245 43.478 0.00 0.00 35.80 5.36
460 461 5.366829 AAGTAAAACTACGTTTGGATGGC 57.633 39.130 0.00 0.00 35.80 4.40
461 462 6.731164 ACAAAGTAAAACTACGTTTGGATGG 58.269 36.000 0.00 0.00 35.80 3.51
462 463 9.161684 GTAACAAAGTAAAACTACGTTTGGATG 57.838 33.333 0.00 0.00 35.80 3.51
463 464 8.891720 TGTAACAAAGTAAAACTACGTTTGGAT 58.108 29.630 0.00 0.00 35.80 3.41
464 465 8.174422 GTGTAACAAAGTAAAACTACGTTTGGA 58.826 33.333 0.00 0.00 34.32 3.53
465 466 7.162385 CGTGTAACAAAGTAAAACTACGTTTGG 59.838 37.037 0.00 0.00 33.96 3.28
466 467 7.162385 CCGTGTAACAAAGTAAAACTACGTTTG 59.838 37.037 0.00 0.00 33.96 2.93
467 468 7.148490 ACCGTGTAACAAAGTAAAACTACGTTT 60.148 33.333 0.00 0.00 34.84 3.60
468 469 6.312672 ACCGTGTAACAAAGTAAAACTACGTT 59.687 34.615 0.00 0.00 35.74 3.99
469 470 5.810074 ACCGTGTAACAAAGTAAAACTACGT 59.190 36.000 0.00 0.00 35.74 3.57
470 471 6.272698 ACCGTGTAACAAAGTAAAACTACG 57.727 37.500 0.00 0.00 35.74 3.51
471 472 9.030301 TCTAACCGTGTAACAAAGTAAAACTAC 57.970 33.333 0.00 0.00 35.74 2.73
472 473 9.762933 ATCTAACCGTGTAACAAAGTAAAACTA 57.237 29.630 0.00 0.00 35.74 2.24
473 474 8.667076 ATCTAACCGTGTAACAAAGTAAAACT 57.333 30.769 0.00 0.00 35.74 2.66
474 475 8.550376 TGATCTAACCGTGTAACAAAGTAAAAC 58.450 33.333 0.00 0.00 35.74 2.43
475 476 8.659925 TGATCTAACCGTGTAACAAAGTAAAA 57.340 30.769 0.00 0.00 35.74 1.52
476 477 8.143193 TCTGATCTAACCGTGTAACAAAGTAAA 58.857 33.333 0.00 0.00 35.74 2.01
477 478 7.660112 TCTGATCTAACCGTGTAACAAAGTAA 58.340 34.615 0.00 0.00 35.74 2.24
478 479 7.218228 TCTGATCTAACCGTGTAACAAAGTA 57.782 36.000 0.00 0.00 35.74 2.24
479 480 6.092955 TCTGATCTAACCGTGTAACAAAGT 57.907 37.500 0.00 0.00 35.74 2.66
480 481 7.596749 AATCTGATCTAACCGTGTAACAAAG 57.403 36.000 0.00 0.00 35.74 2.77
481 482 7.274033 CGTAATCTGATCTAACCGTGTAACAAA 59.726 37.037 0.00 0.00 35.74 2.83
482 483 6.748658 CGTAATCTGATCTAACCGTGTAACAA 59.251 38.462 0.00 0.00 35.74 2.83
483 484 6.260377 CGTAATCTGATCTAACCGTGTAACA 58.740 40.000 0.00 0.00 35.74 2.41
484 485 5.684626 CCGTAATCTGATCTAACCGTGTAAC 59.315 44.000 0.00 0.00 0.00 2.50
485 486 5.221106 CCCGTAATCTGATCTAACCGTGTAA 60.221 44.000 0.00 0.00 0.00 2.41
486 487 4.276678 CCCGTAATCTGATCTAACCGTGTA 59.723 45.833 0.00 0.00 0.00 2.90
487 488 3.067742 CCCGTAATCTGATCTAACCGTGT 59.932 47.826 0.00 0.00 0.00 4.49
488 489 3.552273 CCCCGTAATCTGATCTAACCGTG 60.552 52.174 0.00 0.00 0.00 4.94
489 490 2.626743 CCCCGTAATCTGATCTAACCGT 59.373 50.000 0.00 0.00 0.00 4.83
490 491 2.889045 TCCCCGTAATCTGATCTAACCG 59.111 50.000 0.00 0.00 0.00 4.44
491 492 4.502777 GGTTCCCCGTAATCTGATCTAACC 60.503 50.000 0.00 0.00 0.00 2.85
492 493 4.100498 TGGTTCCCCGTAATCTGATCTAAC 59.900 45.833 0.00 0.00 0.00 2.34
493 494 4.291792 TGGTTCCCCGTAATCTGATCTAA 58.708 43.478 0.00 0.00 0.00 2.10
494 495 3.895656 CTGGTTCCCCGTAATCTGATCTA 59.104 47.826 0.00 0.00 0.00 1.98
495 496 2.700897 CTGGTTCCCCGTAATCTGATCT 59.299 50.000 0.00 0.00 0.00 2.75
496 497 2.807108 GCTGGTTCCCCGTAATCTGATC 60.807 54.545 0.00 0.00 0.00 2.92
497 498 1.141053 GCTGGTTCCCCGTAATCTGAT 59.859 52.381 0.00 0.00 0.00 2.90
498 499 0.539986 GCTGGTTCCCCGTAATCTGA 59.460 55.000 0.00 0.00 0.00 3.27
499 500 0.541863 AGCTGGTTCCCCGTAATCTG 59.458 55.000 0.00 0.00 0.00 2.90
500 501 0.831307 GAGCTGGTTCCCCGTAATCT 59.169 55.000 0.00 0.00 0.00 2.40
501 502 0.831307 AGAGCTGGTTCCCCGTAATC 59.169 55.000 0.00 0.00 0.00 1.75
502 503 0.541863 CAGAGCTGGTTCCCCGTAAT 59.458 55.000 0.00 0.00 0.00 1.89
503 504 0.543410 TCAGAGCTGGTTCCCCGTAA 60.543 55.000 0.00 0.00 0.00 3.18
504 505 0.325296 ATCAGAGCTGGTTCCCCGTA 60.325 55.000 0.00 0.00 0.00 4.02
505 506 0.325296 TATCAGAGCTGGTTCCCCGT 60.325 55.000 0.00 0.00 0.00 5.28
506 507 0.830648 TTATCAGAGCTGGTTCCCCG 59.169 55.000 0.00 0.00 0.00 5.73
507 508 3.017442 GTTTTATCAGAGCTGGTTCCCC 58.983 50.000 0.00 0.00 0.00 4.81
508 509 3.440522 GTGTTTTATCAGAGCTGGTTCCC 59.559 47.826 0.00 0.00 0.00 3.97
509 510 3.440522 GGTGTTTTATCAGAGCTGGTTCC 59.559 47.826 0.00 0.00 0.00 3.62
510 511 3.125316 CGGTGTTTTATCAGAGCTGGTTC 59.875 47.826 0.00 0.00 0.00 3.62
511 512 3.074412 CGGTGTTTTATCAGAGCTGGTT 58.926 45.455 0.00 0.00 0.00 3.67
512 513 2.038557 ACGGTGTTTTATCAGAGCTGGT 59.961 45.455 0.00 0.00 0.00 4.00
513 514 2.699954 ACGGTGTTTTATCAGAGCTGG 58.300 47.619 0.00 0.00 0.00 4.85
514 515 4.508124 GGATACGGTGTTTTATCAGAGCTG 59.492 45.833 0.00 0.00 0.00 4.24
515 516 4.161565 TGGATACGGTGTTTTATCAGAGCT 59.838 41.667 0.00 0.00 42.51 4.09
516 517 4.439057 TGGATACGGTGTTTTATCAGAGC 58.561 43.478 0.00 0.00 42.51 4.09
517 518 6.370442 TGTTTGGATACGGTGTTTTATCAGAG 59.630 38.462 0.00 0.00 42.51 3.35
518 519 6.231951 TGTTTGGATACGGTGTTTTATCAGA 58.768 36.000 0.00 0.00 42.51 3.27
519 520 6.489127 TGTTTGGATACGGTGTTTTATCAG 57.511 37.500 0.00 0.00 42.51 2.90
520 521 6.072397 CCTTGTTTGGATACGGTGTTTTATCA 60.072 38.462 0.00 0.00 42.51 2.15
521 522 6.319399 CCTTGTTTGGATACGGTGTTTTATC 58.681 40.000 0.00 0.00 42.51 1.75
522 523 5.336134 GCCTTGTTTGGATACGGTGTTTTAT 60.336 40.000 0.00 0.00 42.51 1.40
523 524 4.023021 GCCTTGTTTGGATACGGTGTTTTA 60.023 41.667 0.00 0.00 42.51 1.52
524 525 3.243602 GCCTTGTTTGGATACGGTGTTTT 60.244 43.478 0.00 0.00 42.51 2.43
525 526 2.295070 GCCTTGTTTGGATACGGTGTTT 59.705 45.455 0.00 0.00 42.51 2.83
526 527 1.883926 GCCTTGTTTGGATACGGTGTT 59.116 47.619 0.00 0.00 42.51 3.32
527 528 1.530323 GCCTTGTTTGGATACGGTGT 58.470 50.000 0.00 0.00 42.51 4.16
528 529 0.808755 GGCCTTGTTTGGATACGGTG 59.191 55.000 0.00 0.00 42.51 4.94
529 530 0.402504 TGGCCTTGTTTGGATACGGT 59.597 50.000 3.32 0.00 42.51 4.83
530 531 1.094785 CTGGCCTTGTTTGGATACGG 58.905 55.000 3.32 0.00 42.51 4.02
531 532 0.451783 GCTGGCCTTGTTTGGATACG 59.548 55.000 3.32 0.00 42.51 3.06
532 533 0.451783 CGCTGGCCTTGTTTGGATAC 59.548 55.000 3.32 0.00 0.00 2.24
533 534 0.326595 TCGCTGGCCTTGTTTGGATA 59.673 50.000 3.32 0.00 0.00 2.59
534 535 0.962356 CTCGCTGGCCTTGTTTGGAT 60.962 55.000 3.32 0.00 0.00 3.41
535 536 1.600636 CTCGCTGGCCTTGTTTGGA 60.601 57.895 3.32 0.00 0.00 3.53
536 537 1.856265 GACTCGCTGGCCTTGTTTGG 61.856 60.000 3.32 0.00 0.00 3.28
537 538 0.886490 AGACTCGCTGGCCTTGTTTG 60.886 55.000 3.32 0.00 0.00 2.93
538 539 0.179018 AAGACTCGCTGGCCTTGTTT 60.179 50.000 3.32 0.00 0.00 2.83
539 540 0.179018 AAAGACTCGCTGGCCTTGTT 60.179 50.000 3.32 0.00 0.00 2.83
540 541 0.603975 GAAAGACTCGCTGGCCTTGT 60.604 55.000 3.32 0.00 0.00 3.16
541 542 1.301677 GGAAAGACTCGCTGGCCTTG 61.302 60.000 3.32 0.00 0.00 3.61
542 543 1.003233 GGAAAGACTCGCTGGCCTT 60.003 57.895 3.32 0.00 0.00 4.35
543 544 1.484444 AAGGAAAGACTCGCTGGCCT 61.484 55.000 3.32 0.00 33.70 5.19
544 545 1.003233 AAGGAAAGACTCGCTGGCC 60.003 57.895 0.00 0.00 0.00 5.36
545 546 0.036858 AGAAGGAAAGACTCGCTGGC 60.037 55.000 0.00 0.00 0.00 4.85
546 547 2.464157 AAGAAGGAAAGACTCGCTGG 57.536 50.000 0.00 0.00 0.00 4.85
1907 3794 6.803154 AAGCATTACACTAAGTTCAGAACC 57.197 37.500 9.85 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.