Multiple sequence alignment - TraesCS4D01G231600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G231600 chr4D 100.000 2669 0 0 1 2669 391471109 391473777 0.000000e+00 4929
1 TraesCS4D01G231600 chr4D 98.695 996 11 1 1676 2669 439832480 439831485 0.000000e+00 1766
2 TraesCS4D01G231600 chr4D 98.592 994 12 1 1678 2669 145626867 145627860 0.000000e+00 1757
3 TraesCS4D01G231600 chr4D 98.390 994 14 1 1678 2669 308484502 308483509 0.000000e+00 1746
4 TraesCS4D01G231600 chr4D 97.990 995 18 1 1677 2669 361842258 361843252 0.000000e+00 1725
5 TraesCS4D01G231600 chr5D 98.792 993 11 1 1678 2669 101757505 101756513 0.000000e+00 1766
6 TraesCS4D01G231600 chr5D 98.298 999 15 1 1673 2669 501392116 501391118 0.000000e+00 1749
7 TraesCS4D01G231600 chr5D 98.089 994 17 1 1678 2669 565205912 565206905 0.000000e+00 1729
8 TraesCS4D01G231600 chr3D 98.693 995 11 1 1677 2669 29299849 29298855 0.000000e+00 1764
9 TraesCS4D01G231600 chr2D 98.189 994 16 1 1678 2669 78406644 78407637 0.000000e+00 1735
10 TraesCS4D01G231600 chr4A 91.954 1044 55 12 632 1672 73176840 73177857 0.000000e+00 1435
11 TraesCS4D01G231600 chr4B 94.155 941 46 4 737 1674 481492252 481493186 0.000000e+00 1424
12 TraesCS4D01G231600 chr3B 79.769 346 62 6 385 730 116390904 116390567 7.380000e-61 244
13 TraesCS4D01G231600 chr3B 77.937 349 69 6 382 730 116438372 116438032 7.490000e-51 211
14 TraesCS4D01G231600 chr2B 75.775 355 66 11 382 734 403120992 403120656 7.650000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G231600 chr4D 391471109 391473777 2668 False 4929 4929 100.000 1 2669 1 chr4D.!!$F3 2668
1 TraesCS4D01G231600 chr4D 439831485 439832480 995 True 1766 1766 98.695 1676 2669 1 chr4D.!!$R2 993
2 TraesCS4D01G231600 chr4D 145626867 145627860 993 False 1757 1757 98.592 1678 2669 1 chr4D.!!$F1 991
3 TraesCS4D01G231600 chr4D 308483509 308484502 993 True 1746 1746 98.390 1678 2669 1 chr4D.!!$R1 991
4 TraesCS4D01G231600 chr4D 361842258 361843252 994 False 1725 1725 97.990 1677 2669 1 chr4D.!!$F2 992
5 TraesCS4D01G231600 chr5D 101756513 101757505 992 True 1766 1766 98.792 1678 2669 1 chr5D.!!$R1 991
6 TraesCS4D01G231600 chr5D 501391118 501392116 998 True 1749 1749 98.298 1673 2669 1 chr5D.!!$R2 996
7 TraesCS4D01G231600 chr5D 565205912 565206905 993 False 1729 1729 98.089 1678 2669 1 chr5D.!!$F1 991
8 TraesCS4D01G231600 chr3D 29298855 29299849 994 True 1764 1764 98.693 1677 2669 1 chr3D.!!$R1 992
9 TraesCS4D01G231600 chr2D 78406644 78407637 993 False 1735 1735 98.189 1678 2669 1 chr2D.!!$F1 991
10 TraesCS4D01G231600 chr4A 73176840 73177857 1017 False 1435 1435 91.954 632 1672 1 chr4A.!!$F1 1040
11 TraesCS4D01G231600 chr4B 481492252 481493186 934 False 1424 1424 94.155 737 1674 1 chr4B.!!$F1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 536 0.032403 TGGGTCCTACAACAACGACG 59.968 55.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 2508 0.530211 CTCCTGCTTCAGATGCTCCG 60.53 60.0 9.56 0.0 32.44 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.654749 CCGACTCAAGTGTATGCAGA 57.345 50.000 0.00 0.00 0.00 4.26
20 21 2.534298 CCGACTCAAGTGTATGCAGAG 58.466 52.381 0.00 0.00 0.00 3.35
21 22 2.534298 CGACTCAAGTGTATGCAGAGG 58.466 52.381 0.00 0.00 0.00 3.69
22 23 2.736719 CGACTCAAGTGTATGCAGAGGG 60.737 54.545 0.00 0.00 0.00 4.30
23 24 1.556911 ACTCAAGTGTATGCAGAGGGG 59.443 52.381 0.00 0.00 0.00 4.79
24 25 0.911769 TCAAGTGTATGCAGAGGGGG 59.088 55.000 0.00 0.00 0.00 5.40
25 26 0.911769 CAAGTGTATGCAGAGGGGGA 59.088 55.000 0.00 0.00 0.00 4.81
26 27 1.134280 CAAGTGTATGCAGAGGGGGAG 60.134 57.143 0.00 0.00 0.00 4.30
27 28 1.147153 GTGTATGCAGAGGGGGAGC 59.853 63.158 0.00 0.00 0.00 4.70
28 29 1.306911 TGTATGCAGAGGGGGAGCA 60.307 57.895 0.00 0.00 43.14 4.26
29 30 1.340399 TGTATGCAGAGGGGGAGCAG 61.340 60.000 0.00 0.00 42.14 4.24
30 31 1.767672 TATGCAGAGGGGGAGCAGG 60.768 63.158 0.00 0.00 42.14 4.85
35 36 4.499116 GAGGGGGAGCAGGGCCTA 62.499 72.222 5.28 0.00 0.00 3.93
36 37 4.825679 AGGGGGAGCAGGGCCTAC 62.826 72.222 5.28 0.00 0.00 3.18
40 41 4.840005 GGAGCAGGGCCTACGCAC 62.840 72.222 17.20 11.10 39.44 5.34
46 47 2.813200 GGGCCTACGCACTAGGTC 59.187 66.667 0.84 3.84 45.67 3.85
47 48 3.612251 GGCCTACGCACTAGGTCA 58.388 61.111 0.00 0.00 45.70 4.02
48 49 1.141234 GGCCTACGCACTAGGTCAC 59.859 63.158 0.00 0.00 45.70 3.67
49 50 1.321074 GGCCTACGCACTAGGTCACT 61.321 60.000 0.00 0.00 45.70 3.41
50 51 1.386533 GCCTACGCACTAGGTCACTA 58.613 55.000 6.37 0.00 44.01 2.74
51 52 1.955080 GCCTACGCACTAGGTCACTAT 59.045 52.381 6.37 0.00 44.01 2.12
52 53 2.361438 GCCTACGCACTAGGTCACTATT 59.639 50.000 6.37 0.00 44.01 1.73
53 54 3.550436 GCCTACGCACTAGGTCACTATTC 60.550 52.174 6.37 0.00 44.01 1.75
54 55 3.884091 CCTACGCACTAGGTCACTATTCT 59.116 47.826 0.00 0.00 37.81 2.40
55 56 3.784701 ACGCACTAGGTCACTATTCTG 57.215 47.619 0.00 0.00 0.00 3.02
56 57 2.159226 ACGCACTAGGTCACTATTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
57 58 2.799917 CGCACTAGGTCACTATTCTGCC 60.800 54.545 0.00 0.00 0.00 4.85
58 59 2.168521 GCACTAGGTCACTATTCTGCCA 59.831 50.000 0.00 0.00 0.00 4.92
59 60 3.786635 CACTAGGTCACTATTCTGCCAC 58.213 50.000 0.00 0.00 0.00 5.01
60 61 2.766828 ACTAGGTCACTATTCTGCCACC 59.233 50.000 0.00 0.00 0.00 4.61
61 62 1.958288 AGGTCACTATTCTGCCACCT 58.042 50.000 0.00 0.00 0.00 4.00
62 63 3.116096 AGGTCACTATTCTGCCACCTA 57.884 47.619 0.00 0.00 32.27 3.08
63 64 3.658725 AGGTCACTATTCTGCCACCTAT 58.341 45.455 0.00 0.00 32.27 2.57
64 65 3.389329 AGGTCACTATTCTGCCACCTATG 59.611 47.826 0.00 0.00 32.27 2.23
65 66 3.134458 GTCACTATTCTGCCACCTATGC 58.866 50.000 0.00 0.00 0.00 3.14
66 67 2.138320 CACTATTCTGCCACCTATGCG 58.862 52.381 0.00 0.00 0.00 4.73
67 68 1.151668 CTATTCTGCCACCTATGCGC 58.848 55.000 0.00 0.00 0.00 6.09
68 69 0.250295 TATTCTGCCACCTATGCGCC 60.250 55.000 4.18 0.00 0.00 6.53
69 70 2.269520 ATTCTGCCACCTATGCGCCA 62.270 55.000 4.18 0.00 0.00 5.69
70 71 2.438254 CTGCCACCTATGCGCCAA 60.438 61.111 4.18 0.00 0.00 4.52
71 72 2.034843 TGCCACCTATGCGCCAAA 59.965 55.556 4.18 0.00 0.00 3.28
72 73 1.379710 TGCCACCTATGCGCCAAAT 60.380 52.632 4.18 0.00 0.00 2.32
73 74 0.106967 TGCCACCTATGCGCCAAATA 60.107 50.000 4.18 0.00 0.00 1.40
74 75 0.593128 GCCACCTATGCGCCAAATAG 59.407 55.000 4.18 5.54 0.00 1.73
76 77 1.202758 CCACCTATGCGCCAAATAGGA 60.203 52.381 29.30 0.79 46.66 2.94
77 78 2.553028 CCACCTATGCGCCAAATAGGAT 60.553 50.000 29.30 15.97 46.66 3.24
78 79 2.744202 CACCTATGCGCCAAATAGGATC 59.256 50.000 29.30 0.00 46.66 3.36
79 80 2.639839 ACCTATGCGCCAAATAGGATCT 59.360 45.455 29.30 11.88 46.66 2.75
80 81 3.005554 CCTATGCGCCAAATAGGATCTG 58.994 50.000 21.91 0.66 46.66 2.90
81 82 2.645838 ATGCGCCAAATAGGATCTGT 57.354 45.000 4.18 0.00 41.22 3.41
82 83 1.953559 TGCGCCAAATAGGATCTGTC 58.046 50.000 4.18 0.00 41.22 3.51
83 84 1.230324 GCGCCAAATAGGATCTGTCC 58.770 55.000 0.00 0.00 45.45 4.02
96 97 5.753721 GGATCTGTCCTATTTGGCTATCT 57.246 43.478 0.00 0.00 41.60 1.98
97 98 6.859112 GGATCTGTCCTATTTGGCTATCTA 57.141 41.667 0.00 0.00 41.60 1.98
98 99 6.635755 GGATCTGTCCTATTTGGCTATCTAC 58.364 44.000 0.00 0.00 41.60 2.59
99 100 5.707242 TCTGTCCTATTTGGCTATCTACG 57.293 43.478 0.00 0.00 35.26 3.51
100 101 4.022242 TCTGTCCTATTTGGCTATCTACGC 60.022 45.833 0.00 0.00 35.26 4.42
101 102 3.639561 TGTCCTATTTGGCTATCTACGCA 59.360 43.478 0.00 0.00 35.26 5.24
102 103 3.988517 GTCCTATTTGGCTATCTACGCAC 59.011 47.826 0.00 0.00 35.26 5.34
103 104 3.006537 TCCTATTTGGCTATCTACGCACC 59.993 47.826 0.00 0.00 35.26 5.01
104 105 3.244078 CCTATTTGGCTATCTACGCACCA 60.244 47.826 0.00 0.00 0.00 4.17
105 106 2.772077 TTTGGCTATCTACGCACCAA 57.228 45.000 0.00 0.00 38.58 3.67
106 107 2.018542 TTGGCTATCTACGCACCAAC 57.981 50.000 0.00 0.00 35.53 3.77
107 108 1.191535 TGGCTATCTACGCACCAACT 58.808 50.000 0.00 0.00 0.00 3.16
108 109 2.380941 TGGCTATCTACGCACCAACTA 58.619 47.619 0.00 0.00 0.00 2.24
109 110 2.361119 TGGCTATCTACGCACCAACTAG 59.639 50.000 0.00 0.00 0.00 2.57
110 111 2.288273 GGCTATCTACGCACCAACTAGG 60.288 54.545 0.00 0.00 45.67 3.02
111 112 2.288273 GCTATCTACGCACCAACTAGGG 60.288 54.545 0.00 0.00 43.89 3.53
112 113 2.154567 ATCTACGCACCAACTAGGGA 57.845 50.000 0.00 0.00 43.89 4.20
113 114 2.154567 TCTACGCACCAACTAGGGAT 57.845 50.000 0.00 0.00 43.89 3.85
114 115 2.029623 TCTACGCACCAACTAGGGATC 58.970 52.381 0.00 0.00 43.89 3.36
115 116 2.032620 CTACGCACCAACTAGGGATCT 58.967 52.381 0.00 0.00 43.89 2.75
116 117 0.537188 ACGCACCAACTAGGGATCTG 59.463 55.000 0.00 0.00 43.89 2.90
117 118 0.811616 CGCACCAACTAGGGATCTGC 60.812 60.000 0.00 0.00 43.89 4.26
118 119 0.464554 GCACCAACTAGGGATCTGCC 60.465 60.000 0.00 0.00 43.89 4.85
119 120 1.207791 CACCAACTAGGGATCTGCCT 58.792 55.000 0.00 0.00 43.89 4.75
120 121 1.561542 CACCAACTAGGGATCTGCCTT 59.438 52.381 0.00 0.00 43.89 4.35
121 122 1.561542 ACCAACTAGGGATCTGCCTTG 59.438 52.381 0.00 0.00 43.89 3.61
122 123 1.133976 CCAACTAGGGATCTGCCTTGG 60.134 57.143 0.00 0.00 36.66 3.61
123 124 0.548510 AACTAGGGATCTGCCTTGGC 59.451 55.000 4.43 4.43 36.66 4.52
124 125 0.621571 ACTAGGGATCTGCCTTGGCA 60.622 55.000 14.10 14.10 36.66 4.92
125 126 0.548031 CTAGGGATCTGCCTTGGCAA 59.452 55.000 15.63 0.00 36.66 4.52
126 127 1.144503 CTAGGGATCTGCCTTGGCAAT 59.855 52.381 15.63 11.42 36.66 3.56
127 128 0.337428 AGGGATCTGCCTTGGCAATT 59.663 50.000 15.63 5.79 36.66 2.32
128 129 1.197812 GGGATCTGCCTTGGCAATTT 58.802 50.000 15.63 3.30 36.66 1.82
129 130 1.137675 GGGATCTGCCTTGGCAATTTC 59.862 52.381 15.63 11.53 36.66 2.17
130 131 1.826720 GGATCTGCCTTGGCAATTTCA 59.173 47.619 15.63 0.00 0.00 2.69
131 132 2.234414 GGATCTGCCTTGGCAATTTCAA 59.766 45.455 15.63 0.00 0.00 2.69
132 133 3.306919 GGATCTGCCTTGGCAATTTCAAA 60.307 43.478 15.63 0.00 0.00 2.69
133 134 3.834489 TCTGCCTTGGCAATTTCAAAA 57.166 38.095 15.63 0.00 0.00 2.44
134 135 4.148128 TCTGCCTTGGCAATTTCAAAAA 57.852 36.364 15.63 0.00 0.00 1.94
158 159 1.269958 AAAAAGGGATCTGCCTTGGC 58.730 50.000 3.55 4.43 36.66 4.52
159 160 0.411058 AAAAGGGATCTGCCTTGGCT 59.589 50.000 13.18 0.00 36.66 4.75
160 161 0.411058 AAAGGGATCTGCCTTGGCTT 59.589 50.000 13.18 0.00 36.66 4.35
161 162 0.324091 AAGGGATCTGCCTTGGCTTG 60.324 55.000 13.18 6.10 36.66 4.01
162 163 2.421399 GGGATCTGCCTTGGCTTGC 61.421 63.158 13.18 3.44 36.66 4.01
163 164 2.768492 GGATCTGCCTTGGCTTGCG 61.768 63.158 13.18 0.00 0.00 4.85
164 165 2.753043 ATCTGCCTTGGCTTGCGG 60.753 61.111 13.18 0.00 35.14 5.69
170 171 3.669344 CTTGGCTTGCGGCGGAAA 61.669 61.111 16.11 0.00 42.94 3.13
171 172 3.206211 CTTGGCTTGCGGCGGAAAA 62.206 57.895 16.11 5.93 42.94 2.29
172 173 2.691674 CTTGGCTTGCGGCGGAAAAA 62.692 55.000 16.11 9.08 42.94 1.94
194 195 2.638628 CGGTTATCAAACGCCGTATG 57.361 50.000 0.00 0.00 39.41 2.39
195 196 1.259507 CGGTTATCAAACGCCGTATGG 59.740 52.381 0.00 0.00 39.41 2.74
196 197 1.600485 GGTTATCAAACGCCGTATGGG 59.400 52.381 2.41 0.00 36.39 4.00
197 198 2.553086 GTTATCAAACGCCGTATGGGA 58.447 47.619 2.41 0.00 38.47 4.37
198 199 2.228138 TATCAAACGCCGTATGGGAC 57.772 50.000 2.41 0.00 38.47 4.46
212 213 2.107950 TGGGACATGGAAATCGACAC 57.892 50.000 0.00 0.00 0.00 3.67
213 214 1.349357 TGGGACATGGAAATCGACACA 59.651 47.619 0.00 0.00 0.00 3.72
214 215 1.737793 GGGACATGGAAATCGACACAC 59.262 52.381 0.00 0.00 0.00 3.82
215 216 2.422597 GGACATGGAAATCGACACACA 58.577 47.619 0.00 0.00 0.00 3.72
216 217 3.009723 GGACATGGAAATCGACACACAT 58.990 45.455 0.00 0.00 0.00 3.21
217 218 3.063997 GGACATGGAAATCGACACACATC 59.936 47.826 0.00 0.00 0.00 3.06
218 219 3.935203 GACATGGAAATCGACACACATCT 59.065 43.478 0.00 0.00 0.00 2.90
219 220 3.935203 ACATGGAAATCGACACACATCTC 59.065 43.478 0.00 0.00 0.00 2.75
220 221 2.606108 TGGAAATCGACACACATCTCG 58.394 47.619 0.00 0.00 0.00 4.04
221 222 2.029380 TGGAAATCGACACACATCTCGT 60.029 45.455 0.00 0.00 0.00 4.18
222 223 2.993899 GGAAATCGACACACATCTCGTT 59.006 45.455 0.00 0.00 0.00 3.85
223 224 3.060895 GGAAATCGACACACATCTCGTTC 59.939 47.826 0.00 0.00 0.00 3.95
224 225 1.896345 ATCGACACACATCTCGTTCG 58.104 50.000 0.00 0.00 0.00 3.95
225 226 0.728129 TCGACACACATCTCGTTCGC 60.728 55.000 0.00 0.00 0.00 4.70
226 227 1.696644 GACACACATCTCGTTCGCG 59.303 57.895 0.00 0.00 42.98 5.87
227 228 2.267227 GACACACATCTCGTTCGCGC 62.267 60.000 0.00 0.00 41.05 6.86
228 229 2.049526 ACACATCTCGTTCGCGCA 60.050 55.556 8.75 0.00 41.05 6.09
229 230 1.663388 ACACATCTCGTTCGCGCAA 60.663 52.632 8.75 0.00 41.05 4.85
230 231 1.218875 ACACATCTCGTTCGCGCAAA 61.219 50.000 8.75 0.00 41.05 3.68
231 232 0.785708 CACATCTCGTTCGCGCAAAC 60.786 55.000 8.75 4.12 41.05 2.93
232 233 0.944311 ACATCTCGTTCGCGCAAACT 60.944 50.000 9.89 0.00 41.05 2.66
233 234 0.246912 CATCTCGTTCGCGCAAACTC 60.247 55.000 9.89 0.00 41.05 3.01
234 235 0.388649 ATCTCGTTCGCGCAAACTCT 60.389 50.000 9.89 0.00 41.05 3.24
235 236 1.002250 TCTCGTTCGCGCAAACTCTC 61.002 55.000 9.89 0.00 41.05 3.20
236 237 2.092148 CGTTCGCGCAAACTCTCG 59.908 61.111 9.89 0.00 0.00 4.04
237 238 2.645510 CGTTCGCGCAAACTCTCGT 61.646 57.895 9.89 0.00 0.00 4.18
238 239 1.154836 GTTCGCGCAAACTCTCGTG 60.155 57.895 8.75 0.00 37.53 4.35
239 240 1.299544 TTCGCGCAAACTCTCGTGA 60.300 52.632 8.75 0.00 42.45 4.35
240 241 1.299544 TCGCGCAAACTCTCGTGAA 60.300 52.632 8.75 0.00 41.42 3.18
241 242 0.872451 TCGCGCAAACTCTCGTGAAA 60.872 50.000 8.75 0.00 41.42 2.69
242 243 0.042535 CGCGCAAACTCTCGTGAAAA 60.043 50.000 8.75 0.00 38.34 2.29
243 244 1.593551 CGCGCAAACTCTCGTGAAAAA 60.594 47.619 8.75 0.00 38.34 1.94
244 245 1.773525 GCGCAAACTCTCGTGAAAAAC 59.226 47.619 0.30 0.00 0.00 2.43
245 246 2.372350 CGCAAACTCTCGTGAAAAACC 58.628 47.619 0.00 0.00 0.00 3.27
246 247 2.031683 CGCAAACTCTCGTGAAAAACCT 59.968 45.455 0.00 0.00 0.00 3.50
247 248 3.618698 GCAAACTCTCGTGAAAAACCTC 58.381 45.455 0.00 0.00 0.00 3.85
248 249 3.064820 GCAAACTCTCGTGAAAAACCTCA 59.935 43.478 0.00 0.00 0.00 3.86
249 250 4.588278 CAAACTCTCGTGAAAAACCTCAC 58.412 43.478 0.00 0.00 41.98 3.51
250 251 2.835027 ACTCTCGTGAAAAACCTCACC 58.165 47.619 0.00 0.00 42.34 4.02
251 252 2.143925 CTCTCGTGAAAAACCTCACCC 58.856 52.381 0.00 0.00 42.34 4.61
252 253 0.865769 CTCGTGAAAAACCTCACCCG 59.134 55.000 0.00 0.00 42.34 5.28
253 254 1.161563 TCGTGAAAAACCTCACCCGC 61.162 55.000 0.00 0.00 42.34 6.13
254 255 1.658114 GTGAAAAACCTCACCCGCC 59.342 57.895 0.00 0.00 39.93 6.13
255 256 1.529713 TGAAAAACCTCACCCGCCC 60.530 57.895 0.00 0.00 0.00 6.13
256 257 1.529713 GAAAAACCTCACCCGCCCA 60.530 57.895 0.00 0.00 0.00 5.36
257 258 1.075896 AAAAACCTCACCCGCCCAA 60.076 52.632 0.00 0.00 0.00 4.12
258 259 0.688087 AAAAACCTCACCCGCCCAAA 60.688 50.000 0.00 0.00 0.00 3.28
259 260 1.112916 AAAACCTCACCCGCCCAAAG 61.113 55.000 0.00 0.00 0.00 2.77
260 261 4.660938 ACCTCACCCGCCCAAAGC 62.661 66.667 0.00 0.00 38.52 3.51
270 271 4.038080 CCCAAAGCGCGGGTTGTC 62.038 66.667 8.83 0.00 39.05 3.18
271 272 2.978010 CCAAAGCGCGGGTTGTCT 60.978 61.111 8.83 0.00 0.00 3.41
272 273 2.556287 CAAAGCGCGGGTTGTCTC 59.444 61.111 8.83 0.00 0.00 3.36
273 274 3.041940 AAAGCGCGGGTTGTCTCG 61.042 61.111 8.83 0.00 0.00 4.04
280 281 4.373116 GGGTTGTCTCGCGCCTGA 62.373 66.667 0.00 0.00 0.00 3.86
281 282 3.112709 GGTTGTCTCGCGCCTGAC 61.113 66.667 17.25 17.25 0.00 3.51
282 283 3.112709 GTTGTCTCGCGCCTGACC 61.113 66.667 20.04 6.49 32.67 4.02
283 284 3.611674 TTGTCTCGCGCCTGACCA 61.612 61.111 20.04 10.11 32.67 4.02
284 285 2.942796 TTGTCTCGCGCCTGACCAT 61.943 57.895 20.04 0.00 32.67 3.55
285 286 2.583593 GTCTCGCGCCTGACCATC 60.584 66.667 14.26 0.00 0.00 3.51
286 287 4.193334 TCTCGCGCCTGACCATCG 62.193 66.667 0.00 0.00 0.00 3.84
290 291 4.241555 GCGCCTGACCATCGGGAT 62.242 66.667 7.92 0.00 45.95 3.85
291 292 2.280389 CGCCTGACCATCGGGATG 60.280 66.667 7.92 1.62 45.95 3.51
292 293 2.796193 CGCCTGACCATCGGGATGA 61.796 63.158 10.16 0.00 45.95 2.92
293 294 1.070445 GCCTGACCATCGGGATGAG 59.930 63.158 10.16 3.44 45.95 2.90
294 295 1.402896 GCCTGACCATCGGGATGAGA 61.403 60.000 10.16 0.00 45.95 3.27
295 296 1.123077 CCTGACCATCGGGATGAGAA 58.877 55.000 10.16 0.00 45.95 2.87
296 297 1.696336 CCTGACCATCGGGATGAGAAT 59.304 52.381 10.16 0.00 45.95 2.40
297 298 2.549563 CCTGACCATCGGGATGAGAATG 60.550 54.545 10.16 0.00 45.95 2.67
298 299 2.366590 CTGACCATCGGGATGAGAATGA 59.633 50.000 10.16 0.00 41.20 2.57
299 300 2.366590 TGACCATCGGGATGAGAATGAG 59.633 50.000 10.16 0.00 41.20 2.90
300 301 1.071385 ACCATCGGGATGAGAATGAGC 59.929 52.381 10.16 0.00 41.20 4.26
301 302 1.610102 CCATCGGGATGAGAATGAGCC 60.610 57.143 10.16 0.00 41.20 4.70
302 303 0.319728 ATCGGGATGAGAATGAGCCG 59.680 55.000 0.00 0.00 0.00 5.52
303 304 1.301244 CGGGATGAGAATGAGCCGG 60.301 63.158 0.00 0.00 0.00 6.13
304 305 1.599240 GGGATGAGAATGAGCCGGC 60.599 63.158 21.89 21.89 0.00 6.13
305 306 1.599240 GGATGAGAATGAGCCGGCC 60.599 63.158 26.15 15.80 0.00 6.13
306 307 1.599240 GATGAGAATGAGCCGGCCC 60.599 63.158 26.15 13.59 0.00 5.80
307 308 3.466791 ATGAGAATGAGCCGGCCCG 62.467 63.158 26.15 0.00 0.00 6.13
319 320 4.554036 GGCCCGGAGCTAGCCTTG 62.554 72.222 12.13 0.41 43.62 3.61
320 321 4.554036 GCCCGGAGCTAGCCTTGG 62.554 72.222 12.13 10.40 38.99 3.61
321 322 2.764128 CCCGGAGCTAGCCTTGGA 60.764 66.667 12.13 0.00 0.00 3.53
322 323 2.501610 CCGGAGCTAGCCTTGGAC 59.498 66.667 12.13 0.00 0.00 4.02
323 324 2.060980 CCGGAGCTAGCCTTGGACT 61.061 63.158 12.13 0.00 0.00 3.85
324 325 1.439644 CGGAGCTAGCCTTGGACTC 59.560 63.158 12.13 0.00 0.00 3.36
325 326 1.323271 CGGAGCTAGCCTTGGACTCA 61.323 60.000 12.13 0.00 0.00 3.41
326 327 0.463620 GGAGCTAGCCTTGGACTCAG 59.536 60.000 12.13 0.00 0.00 3.35
327 328 0.179086 GAGCTAGCCTTGGACTCAGC 60.179 60.000 12.13 0.00 0.00 4.26
328 329 1.153269 GCTAGCCTTGGACTCAGCC 60.153 63.158 2.29 0.00 0.00 4.85
329 330 1.903877 GCTAGCCTTGGACTCAGCCA 61.904 60.000 2.29 0.00 35.78 4.75
330 331 0.107945 CTAGCCTTGGACTCAGCCAC 60.108 60.000 0.00 0.00 37.75 5.01
331 332 0.545309 TAGCCTTGGACTCAGCCACT 60.545 55.000 0.00 0.00 37.75 4.00
332 333 0.545309 AGCCTTGGACTCAGCCACTA 60.545 55.000 0.00 0.00 37.75 2.74
333 334 0.543749 GCCTTGGACTCAGCCACTAT 59.456 55.000 0.00 0.00 37.75 2.12
334 335 1.745141 GCCTTGGACTCAGCCACTATG 60.745 57.143 0.00 0.00 37.75 2.23
335 336 1.134280 CCTTGGACTCAGCCACTATGG 60.134 57.143 0.00 0.00 41.55 2.74
354 355 2.947448 GCCCAAGGCTAATTTGTGAG 57.053 50.000 0.00 0.00 46.69 3.51
355 356 1.478105 GCCCAAGGCTAATTTGTGAGG 59.522 52.381 0.00 0.00 46.69 3.86
356 357 1.478105 CCCAAGGCTAATTTGTGAGGC 59.522 52.381 0.00 0.00 38.49 4.70
357 358 1.478105 CCAAGGCTAATTTGTGAGGCC 59.522 52.381 0.00 0.00 42.74 5.19
358 359 2.170166 CAAGGCTAATTTGTGAGGCCA 58.830 47.619 5.01 0.00 44.60 5.36
359 360 2.562298 CAAGGCTAATTTGTGAGGCCAA 59.438 45.455 5.01 0.00 44.60 4.52
360 361 2.450476 AGGCTAATTTGTGAGGCCAAG 58.550 47.619 5.01 0.00 44.60 3.61
361 362 1.478105 GGCTAATTTGTGAGGCCAAGG 59.522 52.381 5.01 0.00 42.08 3.61
362 363 1.478105 GCTAATTTGTGAGGCCAAGGG 59.522 52.381 5.01 0.00 0.00 3.95
363 364 2.807676 CTAATTTGTGAGGCCAAGGGT 58.192 47.619 5.01 0.00 0.00 4.34
364 365 2.101640 AATTTGTGAGGCCAAGGGTT 57.898 45.000 5.01 0.00 0.00 4.11
365 366 2.990740 ATTTGTGAGGCCAAGGGTTA 57.009 45.000 5.01 0.00 0.00 2.85
366 367 2.757894 TTTGTGAGGCCAAGGGTTAA 57.242 45.000 5.01 0.00 0.00 2.01
367 368 2.990740 TTGTGAGGCCAAGGGTTAAT 57.009 45.000 5.01 0.00 0.00 1.40
368 369 4.390129 TTTGTGAGGCCAAGGGTTAATA 57.610 40.909 5.01 0.00 0.00 0.98
369 370 3.644966 TGTGAGGCCAAGGGTTAATAG 57.355 47.619 5.01 0.00 0.00 1.73
370 371 3.186283 TGTGAGGCCAAGGGTTAATAGA 58.814 45.455 5.01 0.00 0.00 1.98
371 372 3.589735 TGTGAGGCCAAGGGTTAATAGAA 59.410 43.478 5.01 0.00 0.00 2.10
372 373 4.043561 TGTGAGGCCAAGGGTTAATAGAAA 59.956 41.667 5.01 0.00 0.00 2.52
373 374 5.014202 GTGAGGCCAAGGGTTAATAGAAAA 58.986 41.667 5.01 0.00 0.00 2.29
374 375 5.479027 GTGAGGCCAAGGGTTAATAGAAAAA 59.521 40.000 5.01 0.00 0.00 1.94
413 414 4.900635 AAAAATCAAGTCGTCTGCTTGT 57.099 36.364 5.18 0.00 42.67 3.16
414 415 3.885484 AAATCAAGTCGTCTGCTTGTG 57.115 42.857 5.18 0.00 42.67 3.33
415 416 1.800805 ATCAAGTCGTCTGCTTGTGG 58.199 50.000 5.18 0.00 42.67 4.17
416 417 0.249868 TCAAGTCGTCTGCTTGTGGG 60.250 55.000 5.18 0.00 42.67 4.61
417 418 0.532862 CAAGTCGTCTGCTTGTGGGT 60.533 55.000 0.00 0.00 38.68 4.51
418 419 0.249911 AAGTCGTCTGCTTGTGGGTC 60.250 55.000 0.00 0.00 0.00 4.46
419 420 1.115930 AGTCGTCTGCTTGTGGGTCT 61.116 55.000 0.00 0.00 0.00 3.85
420 421 0.946221 GTCGTCTGCTTGTGGGTCTG 60.946 60.000 0.00 0.00 0.00 3.51
421 422 1.069765 CGTCTGCTTGTGGGTCTGT 59.930 57.895 0.00 0.00 0.00 3.41
422 423 0.317160 CGTCTGCTTGTGGGTCTGTA 59.683 55.000 0.00 0.00 0.00 2.74
423 424 1.670087 CGTCTGCTTGTGGGTCTGTAG 60.670 57.143 0.00 0.00 0.00 2.74
424 425 0.321671 TCTGCTTGTGGGTCTGTAGC 59.678 55.000 0.00 0.00 0.00 3.58
425 426 0.322975 CTGCTTGTGGGTCTGTAGCT 59.677 55.000 0.00 0.00 33.15 3.32
426 427 0.321671 TGCTTGTGGGTCTGTAGCTC 59.678 55.000 0.00 0.00 33.15 4.09
427 428 0.391793 GCTTGTGGGTCTGTAGCTCC 60.392 60.000 0.00 0.00 0.00 4.70
428 429 0.108615 CTTGTGGGTCTGTAGCTCCG 60.109 60.000 0.00 0.00 0.00 4.63
429 430 2.167398 TTGTGGGTCTGTAGCTCCGC 62.167 60.000 0.00 0.00 0.00 5.54
430 431 3.075005 TGGGTCTGTAGCTCCGCC 61.075 66.667 0.00 0.00 0.00 6.13
431 432 2.760385 GGGTCTGTAGCTCCGCCT 60.760 66.667 0.00 0.00 0.00 5.52
432 433 2.787567 GGGTCTGTAGCTCCGCCTC 61.788 68.421 0.00 0.00 0.00 4.70
433 434 1.755008 GGTCTGTAGCTCCGCCTCT 60.755 63.158 0.00 0.00 0.00 3.69
434 435 1.324005 GGTCTGTAGCTCCGCCTCTT 61.324 60.000 0.00 0.00 0.00 2.85
435 436 0.179124 GTCTGTAGCTCCGCCTCTTG 60.179 60.000 0.00 0.00 0.00 3.02
436 437 1.520342 CTGTAGCTCCGCCTCTTGC 60.520 63.158 0.00 0.00 0.00 4.01
437 438 2.202946 GTAGCTCCGCCTCTTGCC 60.203 66.667 0.00 0.00 36.24 4.52
438 439 3.838271 TAGCTCCGCCTCTTGCCG 61.838 66.667 0.00 0.00 36.24 5.69
440 441 4.760047 GCTCCGCCTCTTGCCGAA 62.760 66.667 0.00 0.00 36.24 4.30
441 442 2.047274 CTCCGCCTCTTGCCGAAA 60.047 61.111 0.00 0.00 36.24 3.46
442 443 2.358247 TCCGCCTCTTGCCGAAAC 60.358 61.111 0.00 0.00 36.24 2.78
443 444 2.668212 CCGCCTCTTGCCGAAACA 60.668 61.111 0.00 0.00 36.24 2.83
444 445 2.040544 CCGCCTCTTGCCGAAACAT 61.041 57.895 0.00 0.00 36.24 2.71
445 446 0.742990 CCGCCTCTTGCCGAAACATA 60.743 55.000 0.00 0.00 36.24 2.29
446 447 1.299541 CGCCTCTTGCCGAAACATAT 58.700 50.000 0.00 0.00 36.24 1.78
447 448 1.261619 CGCCTCTTGCCGAAACATATC 59.738 52.381 0.00 0.00 36.24 1.63
448 449 2.288666 GCCTCTTGCCGAAACATATCA 58.711 47.619 0.00 0.00 0.00 2.15
449 450 2.880890 GCCTCTTGCCGAAACATATCAT 59.119 45.455 0.00 0.00 0.00 2.45
450 451 3.304257 GCCTCTTGCCGAAACATATCATG 60.304 47.826 0.00 0.00 0.00 3.07
451 452 4.129380 CCTCTTGCCGAAACATATCATGA 58.871 43.478 0.00 0.00 0.00 3.07
452 453 4.758674 CCTCTTGCCGAAACATATCATGAT 59.241 41.667 13.81 13.81 0.00 2.45
453 454 5.934043 CCTCTTGCCGAAACATATCATGATA 59.066 40.000 17.56 17.56 0.00 2.15
454 455 6.427853 CCTCTTGCCGAAACATATCATGATAA 59.572 38.462 19.03 3.67 0.00 1.75
455 456 7.120285 CCTCTTGCCGAAACATATCATGATAAT 59.880 37.037 19.03 8.12 0.00 1.28
456 457 8.394971 TCTTGCCGAAACATATCATGATAATT 57.605 30.769 19.03 13.31 0.00 1.40
457 458 8.849168 TCTTGCCGAAACATATCATGATAATTT 58.151 29.630 19.03 19.79 0.00 1.82
458 459 9.467258 CTTGCCGAAACATATCATGATAATTTT 57.533 29.630 19.03 18.55 0.00 1.82
459 460 8.800231 TGCCGAAACATATCATGATAATTTTG 57.200 30.769 19.03 21.20 0.00 2.44
460 461 8.412456 TGCCGAAACATATCATGATAATTTTGT 58.588 29.630 24.66 19.58 0.00 2.83
461 462 9.248291 GCCGAAACATATCATGATAATTTTGTT 57.752 29.630 24.66 22.50 29.17 2.83
477 478 7.684062 AATTTTGTTGTTCATATATGCGAGC 57.316 32.000 7.92 0.00 0.00 5.03
478 479 5.809719 TTTGTTGTTCATATATGCGAGCA 57.190 34.783 7.92 0.00 0.00 4.26
479 480 6.375945 TTTGTTGTTCATATATGCGAGCAT 57.624 33.333 15.28 15.28 40.19 3.79
480 481 6.375945 TTGTTGTTCATATATGCGAGCATT 57.624 33.333 16.15 6.89 37.82 3.56
481 482 6.375945 TGTTGTTCATATATGCGAGCATTT 57.624 33.333 16.15 10.77 37.82 2.32
482 483 6.200808 TGTTGTTCATATATGCGAGCATTTG 58.799 36.000 16.15 11.35 37.82 2.32
483 484 6.183360 TGTTGTTCATATATGCGAGCATTTGT 60.183 34.615 16.15 4.00 37.82 2.83
484 485 5.989249 TGTTCATATATGCGAGCATTTGTC 58.011 37.500 16.15 9.67 37.82 3.18
485 486 4.908966 TCATATATGCGAGCATTTGTCG 57.091 40.909 16.15 0.00 40.50 4.35
486 487 3.679502 TCATATATGCGAGCATTTGTCGG 59.320 43.478 16.15 2.51 37.91 4.79
487 488 2.238942 ATATGCGAGCATTTGTCGGA 57.761 45.000 16.15 0.00 42.22 4.55
488 489 2.017138 TATGCGAGCATTTGTCGGAA 57.983 45.000 16.15 0.00 41.31 4.30
489 490 1.164411 ATGCGAGCATTTGTCGGAAA 58.836 45.000 4.52 0.00 41.31 3.13
490 491 1.164411 TGCGAGCATTTGTCGGAAAT 58.836 45.000 0.00 0.00 34.60 2.17
491 492 1.539388 TGCGAGCATTTGTCGGAAATT 59.461 42.857 0.00 0.00 34.60 1.82
492 493 2.744741 TGCGAGCATTTGTCGGAAATTA 59.255 40.909 0.00 0.00 34.60 1.40
493 494 3.376859 TGCGAGCATTTGTCGGAAATTAT 59.623 39.130 0.00 0.00 34.60 1.28
494 495 3.725740 GCGAGCATTTGTCGGAAATTATG 59.274 43.478 0.00 0.00 37.91 1.90
495 496 3.725740 CGAGCATTTGTCGGAAATTATGC 59.274 43.478 7.38 7.38 38.83 3.14
496 497 3.694734 AGCATTTGTCGGAAATTATGCG 58.305 40.909 9.02 0.00 45.27 4.73
504 505 2.452006 GGAAATTATGCGACACACCG 57.548 50.000 0.00 0.00 0.00 4.94
513 514 3.632107 GACACACCGCGTCGCAAA 61.632 61.111 18.75 0.00 0.00 3.68
514 515 3.158011 GACACACCGCGTCGCAAAA 62.158 57.895 18.75 0.00 0.00 2.44
515 516 2.251075 CACACCGCGTCGCAAAAT 59.749 55.556 18.75 0.00 0.00 1.82
516 517 1.369930 CACACCGCGTCGCAAAATT 60.370 52.632 18.75 0.00 0.00 1.82
517 518 1.369930 ACACCGCGTCGCAAAATTG 60.370 52.632 18.75 8.33 0.00 2.32
518 519 2.080062 CACCGCGTCGCAAAATTGG 61.080 57.895 18.75 11.39 0.00 3.16
519 520 2.503809 CCGCGTCGCAAAATTGGG 60.504 61.111 18.75 4.26 41.90 4.12
520 521 2.254051 CGCGTCGCAAAATTGGGT 59.746 55.556 18.75 0.00 41.35 4.51
521 522 1.795962 CGCGTCGCAAAATTGGGTC 60.796 57.895 18.75 4.18 41.35 4.46
522 523 1.443702 GCGTCGCAAAATTGGGTCC 60.444 57.895 13.44 2.49 41.35 4.46
523 524 1.862602 GCGTCGCAAAATTGGGTCCT 61.863 55.000 13.44 0.00 41.35 3.85
524 525 1.444836 CGTCGCAAAATTGGGTCCTA 58.555 50.000 9.62 0.00 41.35 2.94
525 526 1.129811 CGTCGCAAAATTGGGTCCTAC 59.870 52.381 9.62 1.12 41.35 3.18
526 527 2.156098 GTCGCAAAATTGGGTCCTACA 58.844 47.619 9.62 0.00 41.35 2.74
527 528 2.554893 GTCGCAAAATTGGGTCCTACAA 59.445 45.455 9.62 0.00 41.35 2.41
528 529 2.554893 TCGCAAAATTGGGTCCTACAAC 59.445 45.455 9.62 0.00 41.35 3.32
529 530 2.294791 CGCAAAATTGGGTCCTACAACA 59.705 45.455 2.33 0.00 36.49 3.33
530 531 3.243569 CGCAAAATTGGGTCCTACAACAA 60.244 43.478 2.33 0.00 36.49 2.83
531 532 4.055360 GCAAAATTGGGTCCTACAACAAC 58.945 43.478 0.00 0.00 0.00 3.32
532 533 4.295051 CAAAATTGGGTCCTACAACAACG 58.705 43.478 0.00 0.00 0.00 4.10
533 534 3.495434 AATTGGGTCCTACAACAACGA 57.505 42.857 0.00 0.00 0.00 3.85
534 535 2.243602 TTGGGTCCTACAACAACGAC 57.756 50.000 0.00 0.00 0.00 4.34
535 536 0.032403 TGGGTCCTACAACAACGACG 59.968 55.000 0.00 0.00 0.00 5.12
536 537 0.668401 GGGTCCTACAACAACGACGG 60.668 60.000 0.00 0.00 0.00 4.79
537 538 1.287041 GGTCCTACAACAACGACGGC 61.287 60.000 0.00 0.00 0.00 5.68
538 539 1.372004 TCCTACAACAACGACGGCG 60.372 57.895 10.39 10.39 44.79 6.46
539 540 2.468532 CTACAACAACGACGGCGC 59.531 61.111 12.58 0.00 42.48 6.53
540 541 3.329824 CTACAACAACGACGGCGCG 62.330 63.158 12.58 19.04 42.48 6.86
541 542 3.820691 TACAACAACGACGGCGCGA 62.821 57.895 25.37 3.44 42.48 5.87
542 543 4.409588 CAACAACGACGGCGCGAG 62.410 66.667 25.37 19.24 42.48 5.03
555 556 4.445699 GCGAGGGCGATGAAGATT 57.554 55.556 0.00 0.00 40.82 2.40
556 557 1.937391 GCGAGGGCGATGAAGATTG 59.063 57.895 0.00 0.00 40.82 2.67
557 558 0.530650 GCGAGGGCGATGAAGATTGA 60.531 55.000 0.00 0.00 40.82 2.57
558 559 1.939974 CGAGGGCGATGAAGATTGAA 58.060 50.000 0.00 0.00 40.82 2.69
559 560 1.863454 CGAGGGCGATGAAGATTGAAG 59.137 52.381 0.00 0.00 40.82 3.02
560 561 2.739932 CGAGGGCGATGAAGATTGAAGT 60.740 50.000 0.00 0.00 40.82 3.01
561 562 3.274288 GAGGGCGATGAAGATTGAAGTT 58.726 45.455 0.00 0.00 0.00 2.66
562 563 3.012518 AGGGCGATGAAGATTGAAGTTG 58.987 45.455 0.00 0.00 0.00 3.16
563 564 2.749621 GGGCGATGAAGATTGAAGTTGT 59.250 45.455 0.00 0.00 0.00 3.32
564 565 3.191371 GGGCGATGAAGATTGAAGTTGTT 59.809 43.478 0.00 0.00 0.00 2.83
565 566 4.161333 GGCGATGAAGATTGAAGTTGTTG 58.839 43.478 0.00 0.00 0.00 3.33
566 567 4.320494 GGCGATGAAGATTGAAGTTGTTGT 60.320 41.667 0.00 0.00 0.00 3.32
567 568 4.614284 GCGATGAAGATTGAAGTTGTTGTG 59.386 41.667 0.00 0.00 0.00 3.33
568 569 5.560760 GCGATGAAGATTGAAGTTGTTGTGA 60.561 40.000 0.00 0.00 0.00 3.58
569 570 6.075918 CGATGAAGATTGAAGTTGTTGTGAG 58.924 40.000 0.00 0.00 0.00 3.51
570 571 6.073602 CGATGAAGATTGAAGTTGTTGTGAGA 60.074 38.462 0.00 0.00 0.00 3.27
571 572 7.360691 CGATGAAGATTGAAGTTGTTGTGAGAT 60.361 37.037 0.00 0.00 0.00 2.75
572 573 8.853077 ATGAAGATTGAAGTTGTTGTGAGATA 57.147 30.769 0.00 0.00 0.00 1.98
573 574 8.853077 TGAAGATTGAAGTTGTTGTGAGATAT 57.147 30.769 0.00 0.00 0.00 1.63
574 575 9.942850 TGAAGATTGAAGTTGTTGTGAGATATA 57.057 29.630 0.00 0.00 0.00 0.86
591 592 9.872721 GTGAGATATAAAACTATAAGGTAGGCC 57.127 37.037 0.00 0.00 0.00 5.19
592 593 8.746530 TGAGATATAAAACTATAAGGTAGGCCG 58.253 37.037 0.00 0.00 40.50 6.13
593 594 8.890410 AGATATAAAACTATAAGGTAGGCCGA 57.110 34.615 0.00 0.00 40.50 5.54
594 595 8.747471 AGATATAAAACTATAAGGTAGGCCGAC 58.253 37.037 7.59 7.59 40.50 4.79
595 596 4.412796 AAAACTATAAGGTAGGCCGACC 57.587 45.455 26.45 26.45 40.50 4.79
605 606 4.436998 GGCCGACCTGACTGACCG 62.437 72.222 0.00 0.00 0.00 4.79
606 607 3.371063 GCCGACCTGACTGACCGA 61.371 66.667 0.00 0.00 0.00 4.69
607 608 2.878429 CCGACCTGACTGACCGAG 59.122 66.667 0.00 0.00 0.00 4.63
608 609 1.972223 CCGACCTGACTGACCGAGT 60.972 63.158 0.00 0.00 37.76 4.18
609 610 1.210413 CGACCTGACTGACCGAGTG 59.790 63.158 0.00 0.00 33.83 3.51
610 611 1.235281 CGACCTGACTGACCGAGTGA 61.235 60.000 0.00 0.00 33.83 3.41
611 612 0.523966 GACCTGACTGACCGAGTGAG 59.476 60.000 0.00 0.00 35.76 3.51
612 613 0.178987 ACCTGACTGACCGAGTGAGT 60.179 55.000 0.00 0.00 34.25 3.41
613 614 0.523966 CCTGACTGACCGAGTGAGTC 59.476 60.000 13.77 13.77 44.70 3.36
616 617 2.553079 GACTGACCGAGTGAGTCATC 57.447 55.000 15.10 0.00 44.07 2.92
617 618 2.088423 GACTGACCGAGTGAGTCATCT 58.912 52.381 15.10 0.00 44.07 2.90
618 619 3.271729 GACTGACCGAGTGAGTCATCTA 58.728 50.000 15.10 0.00 44.07 1.98
619 620 3.275143 ACTGACCGAGTGAGTCATCTAG 58.725 50.000 0.00 0.00 43.04 2.43
620 621 3.275143 CTGACCGAGTGAGTCATCTAGT 58.725 50.000 0.00 0.00 43.04 2.57
621 622 3.010420 TGACCGAGTGAGTCATCTAGTG 58.990 50.000 0.00 0.00 39.29 2.74
622 623 1.746220 ACCGAGTGAGTCATCTAGTGC 59.254 52.381 0.00 0.00 0.00 4.40
623 624 1.066303 CCGAGTGAGTCATCTAGTGCC 59.934 57.143 0.00 0.00 0.00 5.01
624 625 1.268285 CGAGTGAGTCATCTAGTGCCG 60.268 57.143 0.00 0.00 0.00 5.69
625 626 1.066303 GAGTGAGTCATCTAGTGCCGG 59.934 57.143 0.00 0.00 0.00 6.13
626 627 0.528684 GTGAGTCATCTAGTGCCGGC 60.529 60.000 22.73 22.73 0.00 6.13
627 628 0.684479 TGAGTCATCTAGTGCCGGCT 60.684 55.000 29.70 11.31 0.00 5.52
628 629 1.319541 GAGTCATCTAGTGCCGGCTA 58.680 55.000 29.70 11.95 0.00 3.93
629 630 1.889829 GAGTCATCTAGTGCCGGCTAT 59.110 52.381 29.70 18.50 0.00 2.97
630 631 1.615883 AGTCATCTAGTGCCGGCTATG 59.384 52.381 29.70 20.89 0.00 2.23
636 637 0.177141 TAGTGCCGGCTATGTTGACC 59.823 55.000 29.70 3.91 0.00 4.02
655 656 3.888930 GACCCAAATCTTGTTTGAGACCA 59.111 43.478 2.31 0.00 0.00 4.02
658 659 4.290155 CCAAATCTTGTTTGAGACCAACG 58.710 43.478 2.31 0.00 30.88 4.10
686 687 3.576550 GACCCACTGGCCTTGAATTTTTA 59.423 43.478 3.32 0.00 33.59 1.52
693 694 3.086282 GGCCTTGAATTTTTAGGTCGGA 58.914 45.455 0.00 0.00 0.00 4.55
695 696 4.202020 GGCCTTGAATTTTTAGGTCGGATC 60.202 45.833 0.00 0.00 0.00 3.36
698 699 5.449177 CCTTGAATTTTTAGGTCGGATCAGC 60.449 44.000 0.00 0.00 0.00 4.26
725 726 4.796495 GGCCGACCGAGCCCATTT 62.796 66.667 9.68 0.00 45.16 2.32
731 732 0.819666 GACCGAGCCCATTTCCATCC 60.820 60.000 0.00 0.00 0.00 3.51
734 735 1.450531 CGAGCCCATTTCCATCCTGC 61.451 60.000 0.00 0.00 0.00 4.85
811 812 0.454957 TACGTTACCGCGCTCAGTTC 60.455 55.000 5.56 0.00 37.70 3.01
886 888 4.708386 CCAACGCCGGCCCTTGTA 62.708 66.667 23.46 0.00 0.00 2.41
902 904 1.611556 GTACGTCCTCCACCCCCTT 60.612 63.158 0.00 0.00 0.00 3.95
903 905 1.305549 TACGTCCTCCACCCCCTTC 60.306 63.158 0.00 0.00 0.00 3.46
934 936 1.396996 GCACCACTGGCTAATTACACG 59.603 52.381 0.00 0.00 0.00 4.49
950 952 2.241190 ACGACGCAACGCAATGTCA 61.241 52.632 0.00 0.00 36.70 3.58
1053 1055 3.136750 CTCATCCCTCTCAGGCCG 58.863 66.667 0.00 0.00 32.73 6.13
1153 1155 3.684628 TCTCCTCCCTTCCCGCCT 61.685 66.667 0.00 0.00 0.00 5.52
1211 1213 4.796231 GACATCCACGACCGCGCT 62.796 66.667 5.56 0.00 42.48 5.92
1218 1220 3.367743 ACGACCGCGCTTAGTCCA 61.368 61.111 5.56 0.00 42.48 4.02
1266 1268 3.702048 CTGGGGGAGTTCGGCGAA 61.702 66.667 19.83 19.83 0.00 4.70
1312 1314 1.741401 CTCGCATTCACCGCCTTCA 60.741 57.895 0.00 0.00 0.00 3.02
1661 1663 1.537135 CGAGCGATCTCTTTCCCTTCC 60.537 57.143 0.00 0.00 37.19 3.46
1885 1890 2.362717 GGATCGGAACTCCTCGAAAGAT 59.637 50.000 1.70 0.00 40.84 2.40
1927 1932 4.624024 GTCATGATGTCAGCAAATTGTTGG 59.376 41.667 9.84 0.00 35.10 3.77
2189 2194 2.575993 CACTGGAGCGGGAGACAG 59.424 66.667 0.00 0.00 37.01 3.51
2465 2470 1.093159 GAGCTCCGGACGAGTAAGAA 58.907 55.000 0.00 0.00 41.10 2.52
2503 2508 3.432252 CACCAACAATCGACCTGTAGAAC 59.568 47.826 2.59 0.00 0.00 3.01
2559 2564 0.753262 AGCTTGGCCTTCGTATCGAT 59.247 50.000 3.32 2.16 35.23 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.534298 CTCTGCATACACTTGAGTCGG 58.466 52.381 0.00 0.00 0.00 4.79
1 2 2.534298 CCTCTGCATACACTTGAGTCG 58.466 52.381 0.00 0.00 0.00 4.18
2 3 2.419297 CCCCTCTGCATACACTTGAGTC 60.419 54.545 0.00 0.00 0.00 3.36
3 4 1.556911 CCCCTCTGCATACACTTGAGT 59.443 52.381 0.00 0.00 0.00 3.41
4 5 1.134280 CCCCCTCTGCATACACTTGAG 60.134 57.143 0.00 0.00 0.00 3.02
5 6 0.911769 CCCCCTCTGCATACACTTGA 59.088 55.000 0.00 0.00 0.00 3.02
6 7 0.911769 TCCCCCTCTGCATACACTTG 59.088 55.000 0.00 0.00 0.00 3.16
7 8 1.207791 CTCCCCCTCTGCATACACTT 58.792 55.000 0.00 0.00 0.00 3.16
8 9 1.341156 GCTCCCCCTCTGCATACACT 61.341 60.000 0.00 0.00 0.00 3.55
9 10 1.147153 GCTCCCCCTCTGCATACAC 59.853 63.158 0.00 0.00 0.00 2.90
10 11 1.306911 TGCTCCCCCTCTGCATACA 60.307 57.895 0.00 0.00 0.00 2.29
11 12 1.449353 CTGCTCCCCCTCTGCATAC 59.551 63.158 0.00 0.00 36.07 2.39
12 13 1.767672 CCTGCTCCCCCTCTGCATA 60.768 63.158 0.00 0.00 36.07 3.14
13 14 3.095163 CCTGCTCCCCCTCTGCAT 61.095 66.667 0.00 0.00 36.07 3.96
18 19 4.499116 TAGGCCCTGCTCCCCCTC 62.499 72.222 0.00 0.00 0.00 4.30
19 20 4.825679 GTAGGCCCTGCTCCCCCT 62.826 72.222 0.00 0.00 0.00 4.79
23 24 4.840005 GTGCGTAGGCCCTGCTCC 62.840 72.222 12.11 0.66 38.85 4.70
24 25 2.356818 CTAGTGCGTAGGCCCTGCTC 62.357 65.000 12.11 8.80 38.85 4.26
25 26 2.363795 TAGTGCGTAGGCCCTGCT 60.364 61.111 12.11 1.13 38.85 4.24
26 27 2.107141 CTAGTGCGTAGGCCCTGC 59.893 66.667 0.00 0.78 38.85 4.85
27 28 2.815308 CCTAGTGCGTAGGCCCTG 59.185 66.667 0.00 0.00 42.28 4.45
33 34 4.790123 GCAGAATAGTGACCTAGTGCGTAG 60.790 50.000 0.00 0.00 0.00 3.51
34 35 3.066342 GCAGAATAGTGACCTAGTGCGTA 59.934 47.826 0.00 0.00 0.00 4.42
35 36 2.159226 GCAGAATAGTGACCTAGTGCGT 60.159 50.000 0.00 0.00 0.00 5.24
36 37 2.464865 GCAGAATAGTGACCTAGTGCG 58.535 52.381 0.00 0.00 0.00 5.34
37 38 2.168521 TGGCAGAATAGTGACCTAGTGC 59.831 50.000 0.00 0.00 31.91 4.40
38 39 3.430929 GGTGGCAGAATAGTGACCTAGTG 60.431 52.174 0.00 0.00 0.00 2.74
39 40 2.766828 GGTGGCAGAATAGTGACCTAGT 59.233 50.000 0.00 0.00 0.00 2.57
40 41 3.034635 AGGTGGCAGAATAGTGACCTAG 58.965 50.000 0.00 0.00 31.91 3.02
41 42 3.116096 AGGTGGCAGAATAGTGACCTA 57.884 47.619 0.00 0.00 31.91 3.08
42 43 1.958288 AGGTGGCAGAATAGTGACCT 58.042 50.000 0.00 0.00 0.00 3.85
43 44 3.733337 CATAGGTGGCAGAATAGTGACC 58.267 50.000 0.00 0.00 0.00 4.02
44 45 3.134458 GCATAGGTGGCAGAATAGTGAC 58.866 50.000 0.00 0.00 0.00 3.67
45 46 2.224042 CGCATAGGTGGCAGAATAGTGA 60.224 50.000 0.00 0.00 0.00 3.41
46 47 2.138320 CGCATAGGTGGCAGAATAGTG 58.862 52.381 0.00 0.00 0.00 2.74
47 48 1.541233 GCGCATAGGTGGCAGAATAGT 60.541 52.381 0.30 0.00 0.00 2.12
48 49 1.151668 GCGCATAGGTGGCAGAATAG 58.848 55.000 0.30 0.00 0.00 1.73
49 50 3.305709 GCGCATAGGTGGCAGAATA 57.694 52.632 0.30 0.00 0.00 1.75
50 51 4.147701 GCGCATAGGTGGCAGAAT 57.852 55.556 0.30 0.00 0.00 2.40
56 57 1.202758 TCCTATTTGGCGCATAGGTGG 60.203 52.381 24.05 13.61 42.85 4.61
57 58 2.254546 TCCTATTTGGCGCATAGGTG 57.745 50.000 24.05 7.38 42.85 4.00
58 59 2.639839 AGATCCTATTTGGCGCATAGGT 59.360 45.455 24.05 15.32 42.85 3.08
59 60 3.005554 CAGATCCTATTTGGCGCATAGG 58.994 50.000 20.88 20.88 43.44 2.57
60 61 3.668447 ACAGATCCTATTTGGCGCATAG 58.332 45.455 10.83 8.04 35.26 2.23
61 62 3.557054 GGACAGATCCTATTTGGCGCATA 60.557 47.826 10.83 0.00 42.45 3.14
62 63 2.498167 GACAGATCCTATTTGGCGCAT 58.502 47.619 10.83 0.00 35.26 4.73
63 64 1.475034 GGACAGATCCTATTTGGCGCA 60.475 52.381 10.83 0.00 42.45 6.09
64 65 1.230324 GGACAGATCCTATTTGGCGC 58.770 55.000 0.00 0.00 42.45 6.53
74 75 5.753721 AGATAGCCAAATAGGACAGATCC 57.246 43.478 0.00 0.00 46.69 3.36
75 76 6.326375 CGTAGATAGCCAAATAGGACAGATC 58.674 44.000 0.00 0.00 41.22 2.75
76 77 5.336849 GCGTAGATAGCCAAATAGGACAGAT 60.337 44.000 0.00 0.00 41.22 2.90
77 78 4.022242 GCGTAGATAGCCAAATAGGACAGA 60.022 45.833 0.00 0.00 41.22 3.41
78 79 4.238514 GCGTAGATAGCCAAATAGGACAG 58.761 47.826 0.00 0.00 41.22 3.51
79 80 3.639561 TGCGTAGATAGCCAAATAGGACA 59.360 43.478 0.00 0.00 41.22 4.02
80 81 3.988517 GTGCGTAGATAGCCAAATAGGAC 59.011 47.826 0.00 0.00 41.22 3.85
81 82 3.006537 GGTGCGTAGATAGCCAAATAGGA 59.993 47.826 0.00 0.00 41.22 2.94
82 83 3.244078 TGGTGCGTAGATAGCCAAATAGG 60.244 47.826 0.00 0.00 41.84 2.57
83 84 3.990092 TGGTGCGTAGATAGCCAAATAG 58.010 45.455 0.00 0.00 0.00 1.73
84 85 4.124238 GTTGGTGCGTAGATAGCCAAATA 58.876 43.478 0.00 0.00 40.37 1.40
85 86 2.943033 GTTGGTGCGTAGATAGCCAAAT 59.057 45.455 0.00 0.00 40.37 2.32
86 87 2.027561 AGTTGGTGCGTAGATAGCCAAA 60.028 45.455 0.00 0.00 40.37 3.28
87 88 1.553248 AGTTGGTGCGTAGATAGCCAA 59.447 47.619 0.00 0.00 36.93 4.52
88 89 1.191535 AGTTGGTGCGTAGATAGCCA 58.808 50.000 0.00 0.00 0.00 4.75
89 90 2.288273 CCTAGTTGGTGCGTAGATAGCC 60.288 54.545 0.00 0.00 0.00 3.93
90 91 2.288273 CCCTAGTTGGTGCGTAGATAGC 60.288 54.545 0.00 0.00 0.00 2.97
91 92 3.220110 TCCCTAGTTGGTGCGTAGATAG 58.780 50.000 0.00 0.00 0.00 2.08
92 93 3.301794 TCCCTAGTTGGTGCGTAGATA 57.698 47.619 0.00 0.00 0.00 1.98
93 94 2.154567 TCCCTAGTTGGTGCGTAGAT 57.845 50.000 0.00 0.00 0.00 1.98
94 95 2.029623 GATCCCTAGTTGGTGCGTAGA 58.970 52.381 0.00 0.00 0.00 2.59
95 96 2.032620 AGATCCCTAGTTGGTGCGTAG 58.967 52.381 0.00 0.00 0.00 3.51
96 97 1.754803 CAGATCCCTAGTTGGTGCGTA 59.245 52.381 0.00 0.00 0.00 4.42
97 98 0.537188 CAGATCCCTAGTTGGTGCGT 59.463 55.000 0.00 0.00 0.00 5.24
98 99 0.811616 GCAGATCCCTAGTTGGTGCG 60.812 60.000 0.00 0.00 0.00 5.34
99 100 0.464554 GGCAGATCCCTAGTTGGTGC 60.465 60.000 0.00 0.00 34.48 5.01
100 101 1.207791 AGGCAGATCCCTAGTTGGTG 58.792 55.000 0.00 0.00 32.11 4.17
101 102 1.561542 CAAGGCAGATCCCTAGTTGGT 59.438 52.381 0.00 0.00 33.97 3.67
102 103 1.133976 CCAAGGCAGATCCCTAGTTGG 60.134 57.143 0.00 0.00 33.97 3.77
103 104 1.748591 GCCAAGGCAGATCCCTAGTTG 60.749 57.143 6.14 0.00 41.49 3.16
104 105 0.548510 GCCAAGGCAGATCCCTAGTT 59.451 55.000 6.14 0.00 41.49 2.24
105 106 2.225792 GCCAAGGCAGATCCCTAGT 58.774 57.895 6.14 0.00 41.49 2.57
139 140 1.203225 AGCCAAGGCAGATCCCTTTTT 60.203 47.619 14.40 0.00 42.48 1.94
140 141 0.411058 AGCCAAGGCAGATCCCTTTT 59.589 50.000 14.40 0.00 42.48 2.27
141 142 0.411058 AAGCCAAGGCAGATCCCTTT 59.589 50.000 14.40 0.00 42.48 3.11
142 143 0.324091 CAAGCCAAGGCAGATCCCTT 60.324 55.000 14.40 0.00 45.94 3.95
143 144 1.305623 CAAGCCAAGGCAGATCCCT 59.694 57.895 14.40 0.00 44.88 4.20
144 145 2.421399 GCAAGCCAAGGCAGATCCC 61.421 63.158 14.40 0.00 44.88 3.85
145 146 2.768492 CGCAAGCCAAGGCAGATCC 61.768 63.158 14.40 0.00 44.88 3.36
146 147 2.768492 CCGCAAGCCAAGGCAGATC 61.768 63.158 14.40 0.00 44.88 2.75
147 148 2.753043 CCGCAAGCCAAGGCAGAT 60.753 61.111 14.40 0.00 44.88 2.90
153 154 2.691674 TTTTTCCGCCGCAAGCCAAG 62.692 55.000 0.00 0.00 38.78 3.61
154 155 2.786495 TTTTTCCGCCGCAAGCCAA 61.786 52.632 0.00 0.00 38.78 4.52
155 156 3.219928 TTTTTCCGCCGCAAGCCA 61.220 55.556 0.00 0.00 38.78 4.75
170 171 2.652795 CGGCGTTTGATAACCGTTTTT 58.347 42.857 0.00 0.00 40.77 1.94
171 172 2.319241 CGGCGTTTGATAACCGTTTT 57.681 45.000 0.00 0.00 40.77 2.43
176 177 1.600485 CCCATACGGCGTTTGATAACC 59.400 52.381 27.93 0.00 0.00 2.85
177 178 2.286025 GTCCCATACGGCGTTTGATAAC 59.714 50.000 27.93 18.62 0.00 1.89
178 179 2.093606 TGTCCCATACGGCGTTTGATAA 60.094 45.455 27.93 12.30 0.00 1.75
179 180 1.481363 TGTCCCATACGGCGTTTGATA 59.519 47.619 27.93 14.51 0.00 2.15
180 181 0.250793 TGTCCCATACGGCGTTTGAT 59.749 50.000 27.93 9.95 0.00 2.57
181 182 0.250793 ATGTCCCATACGGCGTTTGA 59.749 50.000 27.93 13.06 0.00 2.69
182 183 0.376852 CATGTCCCATACGGCGTTTG 59.623 55.000 21.24 21.20 0.00 2.93
183 184 0.746563 CCATGTCCCATACGGCGTTT 60.747 55.000 21.24 7.76 0.00 3.60
184 185 1.153249 CCATGTCCCATACGGCGTT 60.153 57.895 21.24 2.93 0.00 4.84
185 186 1.618876 TTCCATGTCCCATACGGCGT 61.619 55.000 19.64 19.64 0.00 5.68
186 187 0.462937 TTTCCATGTCCCATACGGCG 60.463 55.000 4.80 4.80 0.00 6.46
187 188 1.880027 GATTTCCATGTCCCATACGGC 59.120 52.381 0.00 0.00 0.00 5.68
188 189 2.143122 CGATTTCCATGTCCCATACGG 58.857 52.381 0.00 0.00 0.00 4.02
189 190 2.800544 GTCGATTTCCATGTCCCATACG 59.199 50.000 0.00 0.00 0.00 3.06
190 191 3.560068 GTGTCGATTTCCATGTCCCATAC 59.440 47.826 0.00 0.00 0.00 2.39
191 192 3.198853 TGTGTCGATTTCCATGTCCCATA 59.801 43.478 0.00 0.00 0.00 2.74
192 193 2.026356 TGTGTCGATTTCCATGTCCCAT 60.026 45.455 0.00 0.00 0.00 4.00
193 194 1.349357 TGTGTCGATTTCCATGTCCCA 59.651 47.619 0.00 0.00 0.00 4.37
194 195 1.737793 GTGTGTCGATTTCCATGTCCC 59.262 52.381 0.00 0.00 0.00 4.46
195 196 2.422597 TGTGTGTCGATTTCCATGTCC 58.577 47.619 0.00 0.00 0.00 4.02
196 197 3.935203 AGATGTGTGTCGATTTCCATGTC 59.065 43.478 0.00 0.00 0.00 3.06
197 198 3.935203 GAGATGTGTGTCGATTTCCATGT 59.065 43.478 0.00 0.00 0.00 3.21
198 199 3.000623 CGAGATGTGTGTCGATTTCCATG 59.999 47.826 0.00 0.00 43.18 3.66
199 200 3.190079 CGAGATGTGTGTCGATTTCCAT 58.810 45.455 0.00 0.00 43.18 3.41
200 201 2.029380 ACGAGATGTGTGTCGATTTCCA 60.029 45.455 1.92 0.00 43.18 3.53
201 202 2.607187 ACGAGATGTGTGTCGATTTCC 58.393 47.619 1.92 0.00 43.18 3.13
202 203 3.241364 CGAACGAGATGTGTGTCGATTTC 60.241 47.826 1.92 0.00 43.18 2.17
203 204 2.661675 CGAACGAGATGTGTGTCGATTT 59.338 45.455 1.92 0.00 43.18 2.17
204 205 2.251040 CGAACGAGATGTGTGTCGATT 58.749 47.619 1.92 0.00 43.18 3.34
205 206 1.896345 CGAACGAGATGTGTGTCGAT 58.104 50.000 1.92 0.00 43.18 3.59
206 207 0.728129 GCGAACGAGATGTGTGTCGA 60.728 55.000 1.92 0.00 43.18 4.20
207 208 1.696644 GCGAACGAGATGTGTGTCG 59.303 57.895 0.00 0.00 45.67 4.35
208 209 1.696644 CGCGAACGAGATGTGTGTC 59.303 57.895 0.00 0.00 43.93 3.67
209 210 2.372690 GCGCGAACGAGATGTGTGT 61.373 57.895 12.10 0.00 43.93 3.72
210 211 1.885814 TTGCGCGAACGAGATGTGTG 61.886 55.000 12.10 0.00 43.93 3.82
211 212 1.218875 TTTGCGCGAACGAGATGTGT 61.219 50.000 12.10 0.00 43.93 3.72
212 213 0.785708 GTTTGCGCGAACGAGATGTG 60.786 55.000 23.95 0.00 43.93 3.21
213 214 0.944311 AGTTTGCGCGAACGAGATGT 60.944 50.000 29.78 12.62 43.93 3.06
214 215 0.246912 GAGTTTGCGCGAACGAGATG 60.247 55.000 29.78 0.00 43.93 2.90
215 216 0.388649 AGAGTTTGCGCGAACGAGAT 60.389 50.000 29.78 16.07 43.93 2.75
216 217 1.002250 GAGAGTTTGCGCGAACGAGA 61.002 55.000 29.78 0.00 43.93 4.04
217 218 1.412606 GAGAGTTTGCGCGAACGAG 59.587 57.895 29.78 0.00 43.93 4.18
218 219 2.362047 CGAGAGTTTGCGCGAACGA 61.362 57.895 29.78 0.00 43.93 3.85
219 220 2.092148 CGAGAGTTTGCGCGAACG 59.908 61.111 29.78 17.45 44.07 3.95
220 221 1.154836 CACGAGAGTTTGCGCGAAC 60.155 57.895 29.41 29.41 46.40 3.95
221 222 0.872451 TTCACGAGAGTTTGCGCGAA 60.872 50.000 12.10 5.81 46.40 4.70
222 223 0.872451 TTTCACGAGAGTTTGCGCGA 60.872 50.000 12.10 0.00 46.40 5.87
223 224 0.042535 TTTTCACGAGAGTTTGCGCG 60.043 50.000 0.00 0.00 46.40 6.86
224 225 1.773525 GTTTTTCACGAGAGTTTGCGC 59.226 47.619 0.00 0.00 46.40 6.09
225 226 2.031683 AGGTTTTTCACGAGAGTTTGCG 59.968 45.455 0.00 0.00 46.40 4.85
226 227 3.064820 TGAGGTTTTTCACGAGAGTTTGC 59.935 43.478 0.00 0.00 46.40 3.68
227 228 4.495844 GGTGAGGTTTTTCACGAGAGTTTG 60.496 45.833 0.00 0.00 46.61 2.93
228 229 3.626217 GGTGAGGTTTTTCACGAGAGTTT 59.374 43.478 0.00 0.00 46.61 2.66
229 230 3.203716 GGTGAGGTTTTTCACGAGAGTT 58.796 45.455 0.00 0.00 46.61 3.01
230 231 2.484947 GGGTGAGGTTTTTCACGAGAGT 60.485 50.000 0.00 0.00 46.61 3.24
231 232 2.143925 GGGTGAGGTTTTTCACGAGAG 58.856 52.381 0.00 0.00 46.61 3.20
232 233 1.539496 CGGGTGAGGTTTTTCACGAGA 60.539 52.381 0.00 0.00 46.61 4.04
233 234 0.865769 CGGGTGAGGTTTTTCACGAG 59.134 55.000 0.00 0.00 46.61 4.18
234 235 1.161563 GCGGGTGAGGTTTTTCACGA 61.162 55.000 0.00 0.00 46.61 4.35
235 236 1.281656 GCGGGTGAGGTTTTTCACG 59.718 57.895 0.62 0.00 46.61 4.35
236 237 1.658114 GGCGGGTGAGGTTTTTCAC 59.342 57.895 0.00 0.00 45.28 3.18
237 238 1.529713 GGGCGGGTGAGGTTTTTCA 60.530 57.895 0.00 0.00 0.00 2.69
238 239 1.110518 TTGGGCGGGTGAGGTTTTTC 61.111 55.000 0.00 0.00 0.00 2.29
239 240 0.688087 TTTGGGCGGGTGAGGTTTTT 60.688 50.000 0.00 0.00 0.00 1.94
240 241 1.075896 TTTGGGCGGGTGAGGTTTT 60.076 52.632 0.00 0.00 0.00 2.43
241 242 1.530655 CTTTGGGCGGGTGAGGTTT 60.531 57.895 0.00 0.00 0.00 3.27
242 243 2.115266 CTTTGGGCGGGTGAGGTT 59.885 61.111 0.00 0.00 0.00 3.50
243 244 4.660938 GCTTTGGGCGGGTGAGGT 62.661 66.667 0.00 0.00 0.00 3.85
254 255 2.966309 GAGACAACCCGCGCTTTGG 61.966 63.158 18.57 9.77 0.00 3.28
255 256 2.556287 GAGACAACCCGCGCTTTG 59.444 61.111 5.56 14.33 0.00 2.77
256 257 3.041940 CGAGACAACCCGCGCTTT 61.042 61.111 5.56 0.00 0.00 3.51
263 264 4.373116 TCAGGCGCGAGACAACCC 62.373 66.667 12.10 0.00 46.78 4.11
264 265 3.112709 GTCAGGCGCGAGACAACC 61.113 66.667 21.37 0.00 46.78 3.77
265 266 3.112709 GGTCAGGCGCGAGACAAC 61.113 66.667 25.53 10.86 46.78 3.32
266 267 2.835701 GATGGTCAGGCGCGAGACAA 62.836 60.000 25.53 18.54 46.78 3.18
267 268 3.356639 GATGGTCAGGCGCGAGACA 62.357 63.158 25.53 15.41 46.78 3.41
268 269 2.583593 GATGGTCAGGCGCGAGAC 60.584 66.667 12.10 19.02 42.06 3.36
269 270 4.193334 CGATGGTCAGGCGCGAGA 62.193 66.667 12.10 0.06 0.00 4.04
273 274 4.241555 ATCCCGATGGTCAGGCGC 62.242 66.667 0.00 0.00 0.00 6.53
274 275 2.280389 CATCCCGATGGTCAGGCG 60.280 66.667 0.00 0.00 35.24 5.52
275 276 1.070445 CTCATCCCGATGGTCAGGC 59.930 63.158 4.90 0.00 39.24 4.85
276 277 1.123077 TTCTCATCCCGATGGTCAGG 58.877 55.000 4.90 0.00 39.24 3.86
277 278 2.366590 TCATTCTCATCCCGATGGTCAG 59.633 50.000 4.90 0.00 39.24 3.51
278 279 2.366590 CTCATTCTCATCCCGATGGTCA 59.633 50.000 4.90 0.00 39.24 4.02
279 280 2.869636 GCTCATTCTCATCCCGATGGTC 60.870 54.545 4.90 0.00 39.24 4.02
280 281 1.071385 GCTCATTCTCATCCCGATGGT 59.929 52.381 4.90 0.00 39.24 3.55
281 282 1.610102 GGCTCATTCTCATCCCGATGG 60.610 57.143 4.90 0.00 39.24 3.51
282 283 1.805869 GGCTCATTCTCATCCCGATG 58.194 55.000 0.00 0.00 40.09 3.84
283 284 0.319728 CGGCTCATTCTCATCCCGAT 59.680 55.000 0.00 0.00 38.04 4.18
284 285 1.742146 CGGCTCATTCTCATCCCGA 59.258 57.895 0.00 0.00 38.04 5.14
285 286 1.301244 CCGGCTCATTCTCATCCCG 60.301 63.158 0.00 0.00 35.74 5.14
286 287 1.599240 GCCGGCTCATTCTCATCCC 60.599 63.158 22.15 0.00 0.00 3.85
287 288 1.599240 GGCCGGCTCATTCTCATCC 60.599 63.158 28.56 0.00 0.00 3.51
288 289 1.599240 GGGCCGGCTCATTCTCATC 60.599 63.158 28.56 4.74 0.00 2.92
289 290 2.512896 GGGCCGGCTCATTCTCAT 59.487 61.111 28.56 0.00 0.00 2.90
290 291 4.161295 CGGGCCGGCTCATTCTCA 62.161 66.667 29.20 0.00 0.00 3.27
291 292 4.918201 CCGGGCCGGCTCATTCTC 62.918 72.222 34.87 7.70 41.17 2.87
302 303 4.554036 CAAGGCTAGCTCCGGGCC 62.554 72.222 15.72 10.42 45.57 5.80
303 304 4.554036 CCAAGGCTAGCTCCGGGC 62.554 72.222 15.72 3.80 42.19 6.13
304 305 2.764128 TCCAAGGCTAGCTCCGGG 60.764 66.667 15.72 11.33 0.00 5.73
305 306 2.022240 GAGTCCAAGGCTAGCTCCGG 62.022 65.000 15.72 12.17 0.00 5.14
306 307 1.323271 TGAGTCCAAGGCTAGCTCCG 61.323 60.000 15.72 2.74 0.00 4.63
307 308 0.463620 CTGAGTCCAAGGCTAGCTCC 59.536 60.000 15.72 0.00 0.00 4.70
308 309 0.179086 GCTGAGTCCAAGGCTAGCTC 60.179 60.000 15.72 4.82 0.00 4.09
309 310 1.621672 GGCTGAGTCCAAGGCTAGCT 61.622 60.000 15.72 0.00 0.00 3.32
310 311 1.153269 GGCTGAGTCCAAGGCTAGC 60.153 63.158 6.04 6.04 0.00 3.42
311 312 0.107945 GTGGCTGAGTCCAAGGCTAG 60.108 60.000 5.75 0.00 37.96 3.42
312 313 0.545309 AGTGGCTGAGTCCAAGGCTA 60.545 55.000 5.75 0.00 37.96 3.93
313 314 0.545309 TAGTGGCTGAGTCCAAGGCT 60.545 55.000 5.75 0.00 37.96 4.58
314 315 0.543749 ATAGTGGCTGAGTCCAAGGC 59.456 55.000 0.00 0.00 37.96 4.35
315 316 1.134280 CCATAGTGGCTGAGTCCAAGG 60.134 57.143 0.00 0.00 37.96 3.61
316 317 2.322355 CCATAGTGGCTGAGTCCAAG 57.678 55.000 0.00 0.00 37.96 3.61
336 337 1.478105 GCCTCACAAATTAGCCTTGGG 59.522 52.381 0.00 0.00 0.00 4.12
337 338 1.478105 GGCCTCACAAATTAGCCTTGG 59.522 52.381 0.00 0.00 40.57 3.61
338 339 2.170166 TGGCCTCACAAATTAGCCTTG 58.830 47.619 3.32 0.00 44.19 3.61
339 340 2.603075 TGGCCTCACAAATTAGCCTT 57.397 45.000 3.32 0.00 44.19 4.35
340 341 2.450476 CTTGGCCTCACAAATTAGCCT 58.550 47.619 3.32 0.00 44.19 4.58
341 342 1.478105 CCTTGGCCTCACAAATTAGCC 59.522 52.381 3.32 0.00 44.13 3.93
342 343 1.478105 CCCTTGGCCTCACAAATTAGC 59.522 52.381 3.32 0.00 0.00 3.09
343 344 2.807676 ACCCTTGGCCTCACAAATTAG 58.192 47.619 3.32 0.00 0.00 1.73
344 345 2.990740 ACCCTTGGCCTCACAAATTA 57.009 45.000 3.32 0.00 0.00 1.40
345 346 2.101640 AACCCTTGGCCTCACAAATT 57.898 45.000 3.32 0.00 0.00 1.82
346 347 2.990740 TAACCCTTGGCCTCACAAAT 57.009 45.000 3.32 0.00 0.00 2.32
347 348 2.757894 TTAACCCTTGGCCTCACAAA 57.242 45.000 3.32 0.00 0.00 2.83
348 349 2.990740 ATTAACCCTTGGCCTCACAA 57.009 45.000 3.32 0.00 0.00 3.33
349 350 3.186283 TCTATTAACCCTTGGCCTCACA 58.814 45.455 3.32 0.00 0.00 3.58
350 351 3.926058 TCTATTAACCCTTGGCCTCAC 57.074 47.619 3.32 0.00 0.00 3.51
351 352 4.938575 TTTCTATTAACCCTTGGCCTCA 57.061 40.909 3.32 0.00 0.00 3.86
392 393 4.498009 CCACAAGCAGACGACTTGATTTTT 60.498 41.667 14.91 0.00 45.99 1.94
393 394 3.003689 CCACAAGCAGACGACTTGATTTT 59.996 43.478 14.91 0.00 45.99 1.82
394 395 2.549754 CCACAAGCAGACGACTTGATTT 59.450 45.455 14.91 0.00 45.99 2.17
395 396 2.146342 CCACAAGCAGACGACTTGATT 58.854 47.619 14.91 2.30 45.99 2.57
396 397 1.609061 CCCACAAGCAGACGACTTGAT 60.609 52.381 14.91 0.00 45.99 2.57
397 398 0.249868 CCCACAAGCAGACGACTTGA 60.250 55.000 14.91 0.00 45.99 3.02
399 400 0.249911 GACCCACAAGCAGACGACTT 60.250 55.000 0.00 0.00 0.00 3.01
400 401 1.115930 AGACCCACAAGCAGACGACT 61.116 55.000 0.00 0.00 0.00 4.18
401 402 0.946221 CAGACCCACAAGCAGACGAC 60.946 60.000 0.00 0.00 0.00 4.34
402 403 1.367471 CAGACCCACAAGCAGACGA 59.633 57.895 0.00 0.00 0.00 4.20
403 404 0.317160 TACAGACCCACAAGCAGACG 59.683 55.000 0.00 0.00 0.00 4.18
404 405 1.941668 GCTACAGACCCACAAGCAGAC 60.942 57.143 0.00 0.00 33.38 3.51
405 406 0.321671 GCTACAGACCCACAAGCAGA 59.678 55.000 0.00 0.00 33.38 4.26
406 407 0.322975 AGCTACAGACCCACAAGCAG 59.677 55.000 0.00 0.00 35.63 4.24
407 408 0.321671 GAGCTACAGACCCACAAGCA 59.678 55.000 0.00 0.00 35.63 3.91
408 409 0.391793 GGAGCTACAGACCCACAAGC 60.392 60.000 0.00 0.00 0.00 4.01
409 410 0.108615 CGGAGCTACAGACCCACAAG 60.109 60.000 0.00 0.00 0.00 3.16
410 411 1.972198 CGGAGCTACAGACCCACAA 59.028 57.895 0.00 0.00 0.00 3.33
411 412 3.694746 CGGAGCTACAGACCCACA 58.305 61.111 0.00 0.00 0.00 4.17
428 429 2.288666 TGATATGTTTCGGCAAGAGGC 58.711 47.619 0.00 0.00 43.74 4.70
429 430 4.129380 TCATGATATGTTTCGGCAAGAGG 58.871 43.478 0.00 0.00 0.00 3.69
430 431 5.936686 ATCATGATATGTTTCGGCAAGAG 57.063 39.130 6.36 0.00 0.00 2.85
431 432 7.984422 ATTATCATGATATGTTTCGGCAAGA 57.016 32.000 16.06 0.00 0.00 3.02
432 433 9.467258 AAAATTATCATGATATGTTTCGGCAAG 57.533 29.630 16.06 0.00 0.00 4.01
433 434 9.247126 CAAAATTATCATGATATGTTTCGGCAA 57.753 29.630 16.06 0.00 0.00 4.52
434 435 8.412456 ACAAAATTATCATGATATGTTTCGGCA 58.588 29.630 16.06 0.00 0.00 5.69
435 436 8.801715 ACAAAATTATCATGATATGTTTCGGC 57.198 30.769 16.06 0.00 0.00 5.54
451 452 9.398170 GCTCGCATATATGAACAACAAAATTAT 57.602 29.630 17.10 0.00 0.00 1.28
452 453 8.401709 TGCTCGCATATATGAACAACAAAATTA 58.598 29.630 17.10 0.00 0.00 1.40
453 454 7.257003 TGCTCGCATATATGAACAACAAAATT 58.743 30.769 17.10 0.00 0.00 1.82
454 455 6.794374 TGCTCGCATATATGAACAACAAAAT 58.206 32.000 17.10 0.00 0.00 1.82
455 456 6.188400 TGCTCGCATATATGAACAACAAAA 57.812 33.333 17.10 0.00 0.00 2.44
456 457 5.809719 TGCTCGCATATATGAACAACAAA 57.190 34.783 17.10 0.00 0.00 2.83
457 458 6.375945 AATGCTCGCATATATGAACAACAA 57.624 33.333 17.10 0.00 35.31 2.83
458 459 6.183360 ACAAATGCTCGCATATATGAACAACA 60.183 34.615 17.10 7.48 35.31 3.33
459 460 6.201517 ACAAATGCTCGCATATATGAACAAC 58.798 36.000 17.10 2.09 35.31 3.32
460 461 6.375945 ACAAATGCTCGCATATATGAACAA 57.624 33.333 17.10 0.00 35.31 2.83
461 462 5.333263 CGACAAATGCTCGCATATATGAACA 60.333 40.000 17.10 8.14 35.31 3.18
462 463 5.075448 CGACAAATGCTCGCATATATGAAC 58.925 41.667 17.10 2.76 35.31 3.18
463 464 4.152223 CCGACAAATGCTCGCATATATGAA 59.848 41.667 17.10 2.71 35.31 2.57
464 465 3.679502 CCGACAAATGCTCGCATATATGA 59.320 43.478 17.10 0.00 35.31 2.15
465 466 3.679502 TCCGACAAATGCTCGCATATATG 59.320 43.478 8.45 8.45 35.31 1.78
466 467 3.925379 TCCGACAAATGCTCGCATATAT 58.075 40.909 4.63 0.00 35.31 0.86
467 468 3.378911 TCCGACAAATGCTCGCATATA 57.621 42.857 4.63 0.00 35.31 0.86
468 469 2.238942 TCCGACAAATGCTCGCATAT 57.761 45.000 4.63 0.00 35.31 1.78
469 470 2.017138 TTCCGACAAATGCTCGCATA 57.983 45.000 4.63 0.00 35.31 3.14
470 471 1.164411 TTTCCGACAAATGCTCGCAT 58.836 45.000 0.00 0.00 38.46 4.73
471 472 1.164411 ATTTCCGACAAATGCTCGCA 58.836 45.000 0.00 0.00 0.00 5.10
472 473 2.262572 AATTTCCGACAAATGCTCGC 57.737 45.000 0.00 0.00 0.00 5.03
473 474 3.725740 GCATAATTTCCGACAAATGCTCG 59.274 43.478 0.00 0.00 37.37 5.03
474 475 3.725740 CGCATAATTTCCGACAAATGCTC 59.274 43.478 0.00 0.00 38.02 4.26
475 476 3.376859 TCGCATAATTTCCGACAAATGCT 59.623 39.130 0.00 0.00 38.02 3.79
476 477 3.690422 TCGCATAATTTCCGACAAATGC 58.310 40.909 0.00 0.00 37.07 3.56
483 484 2.004017 GGTGTGTCGCATAATTTCCGA 58.996 47.619 0.00 0.00 0.00 4.55
484 485 1.267334 CGGTGTGTCGCATAATTTCCG 60.267 52.381 0.00 0.00 0.00 4.30
485 486 2.452006 CGGTGTGTCGCATAATTTCC 57.548 50.000 0.00 0.00 0.00 3.13
496 497 2.438385 ATTTTGCGACGCGGTGTGTC 62.438 55.000 16.14 0.00 39.38 3.67
497 498 2.054140 AATTTTGCGACGCGGTGTGT 62.054 50.000 16.14 0.00 0.00 3.72
498 499 1.369930 AATTTTGCGACGCGGTGTG 60.370 52.632 16.14 0.00 0.00 3.82
499 500 1.369930 CAATTTTGCGACGCGGTGT 60.370 52.632 16.14 0.00 0.00 4.16
500 501 2.080062 CCAATTTTGCGACGCGGTG 61.080 57.895 16.14 2.63 0.00 4.94
501 502 2.254051 CCAATTTTGCGACGCGGT 59.746 55.556 16.14 0.00 0.00 5.68
502 503 2.503809 CCCAATTTTGCGACGCGG 60.504 61.111 16.14 8.77 0.00 6.46
503 504 1.795962 GACCCAATTTTGCGACGCG 60.796 57.895 16.14 3.53 0.00 6.01
504 505 1.443702 GGACCCAATTTTGCGACGC 60.444 57.895 14.19 14.19 0.00 5.19
505 506 1.129811 GTAGGACCCAATTTTGCGACG 59.870 52.381 0.00 0.00 0.00 5.12
506 507 2.156098 TGTAGGACCCAATTTTGCGAC 58.844 47.619 0.00 0.00 0.00 5.19
507 508 2.554893 GTTGTAGGACCCAATTTTGCGA 59.445 45.455 0.00 0.00 0.00 5.10
508 509 2.294791 TGTTGTAGGACCCAATTTTGCG 59.705 45.455 0.00 0.00 0.00 4.85
509 510 4.055360 GTTGTTGTAGGACCCAATTTTGC 58.945 43.478 0.00 0.00 0.00 3.68
510 511 4.036971 TCGTTGTTGTAGGACCCAATTTTG 59.963 41.667 0.00 0.00 0.00 2.44
511 512 4.037089 GTCGTTGTTGTAGGACCCAATTTT 59.963 41.667 0.00 0.00 0.00 1.82
512 513 3.566742 GTCGTTGTTGTAGGACCCAATTT 59.433 43.478 0.00 0.00 0.00 1.82
513 514 3.143728 GTCGTTGTTGTAGGACCCAATT 58.856 45.455 0.00 0.00 0.00 2.32
514 515 2.774687 GTCGTTGTTGTAGGACCCAAT 58.225 47.619 0.00 0.00 0.00 3.16
515 516 1.538634 CGTCGTTGTTGTAGGACCCAA 60.539 52.381 0.00 0.00 31.06 4.12
516 517 0.032403 CGTCGTTGTTGTAGGACCCA 59.968 55.000 0.00 0.00 31.06 4.51
517 518 0.668401 CCGTCGTTGTTGTAGGACCC 60.668 60.000 0.00 0.00 31.06 4.46
518 519 1.287041 GCCGTCGTTGTTGTAGGACC 61.287 60.000 0.00 0.00 31.06 4.46
519 520 1.611592 CGCCGTCGTTGTTGTAGGAC 61.612 60.000 0.00 0.00 0.00 3.85
520 521 1.372004 CGCCGTCGTTGTTGTAGGA 60.372 57.895 0.00 0.00 0.00 2.94
521 522 3.007070 GCGCCGTCGTTGTTGTAGG 62.007 63.158 0.00 0.00 38.14 3.18
522 523 2.468532 GCGCCGTCGTTGTTGTAG 59.531 61.111 0.00 0.00 38.14 2.74
523 524 3.396502 CGCGCCGTCGTTGTTGTA 61.397 61.111 0.00 0.00 38.14 2.41
525 526 4.409588 CTCGCGCCGTCGTTGTTG 62.410 66.667 0.00 0.00 38.14 3.33
538 539 0.530650 TCAATCTTCATCGCCCTCGC 60.531 55.000 0.00 0.00 35.26 5.03
539 540 1.863454 CTTCAATCTTCATCGCCCTCG 59.137 52.381 0.00 0.00 0.00 4.63
540 541 2.911484 ACTTCAATCTTCATCGCCCTC 58.089 47.619 0.00 0.00 0.00 4.30
541 542 3.012518 CAACTTCAATCTTCATCGCCCT 58.987 45.455 0.00 0.00 0.00 5.19
542 543 2.749621 ACAACTTCAATCTTCATCGCCC 59.250 45.455 0.00 0.00 0.00 6.13
543 544 4.161333 CAACAACTTCAATCTTCATCGCC 58.839 43.478 0.00 0.00 0.00 5.54
544 545 4.614284 CACAACAACTTCAATCTTCATCGC 59.386 41.667 0.00 0.00 0.00 4.58
545 546 5.989249 TCACAACAACTTCAATCTTCATCG 58.011 37.500 0.00 0.00 0.00 3.84
546 547 7.194607 TCTCACAACAACTTCAATCTTCATC 57.805 36.000 0.00 0.00 0.00 2.92
547 548 7.756395 ATCTCACAACAACTTCAATCTTCAT 57.244 32.000 0.00 0.00 0.00 2.57
548 549 8.853077 ATATCTCACAACAACTTCAATCTTCA 57.147 30.769 0.00 0.00 0.00 3.02
565 566 9.872721 GGCCTACCTTATAGTTTTATATCTCAC 57.127 37.037 0.00 0.00 0.00 3.51
566 567 8.746530 CGGCCTACCTTATAGTTTTATATCTCA 58.253 37.037 0.00 0.00 0.00 3.27
567 568 8.964772 TCGGCCTACCTTATAGTTTTATATCTC 58.035 37.037 0.00 0.00 0.00 2.75
568 569 8.747471 GTCGGCCTACCTTATAGTTTTATATCT 58.253 37.037 0.00 0.00 0.00 1.98
569 570 7.978414 GGTCGGCCTACCTTATAGTTTTATATC 59.022 40.741 19.12 0.00 36.53 1.63
570 571 7.845037 GGTCGGCCTACCTTATAGTTTTATAT 58.155 38.462 19.12 0.00 36.53 0.86
571 572 7.232118 GGTCGGCCTACCTTATAGTTTTATA 57.768 40.000 19.12 0.00 36.53 0.98
572 573 6.106648 GGTCGGCCTACCTTATAGTTTTAT 57.893 41.667 19.12 0.00 36.53 1.40
573 574 5.535753 GGTCGGCCTACCTTATAGTTTTA 57.464 43.478 19.12 0.00 36.53 1.52
574 575 4.412796 GGTCGGCCTACCTTATAGTTTT 57.587 45.455 19.12 0.00 36.53 2.43
584 585 1.681327 TCAGTCAGGTCGGCCTACC 60.681 63.158 18.78 18.78 44.97 3.18
585 586 1.511768 GTCAGTCAGGTCGGCCTAC 59.488 63.158 9.07 7.96 44.97 3.18
586 587 1.681327 GGTCAGTCAGGTCGGCCTA 60.681 63.158 9.07 0.00 44.97 3.93
588 589 4.436998 CGGTCAGTCAGGTCGGCC 62.437 72.222 0.00 0.00 0.00 6.13
589 590 3.343788 CTCGGTCAGTCAGGTCGGC 62.344 68.421 0.00 0.00 0.00 5.54
590 591 1.972223 ACTCGGTCAGTCAGGTCGG 60.972 63.158 0.00 0.00 0.00 4.79
591 592 1.210413 CACTCGGTCAGTCAGGTCG 59.790 63.158 0.00 0.00 30.26 4.79
592 593 0.523966 CTCACTCGGTCAGTCAGGTC 59.476 60.000 0.00 0.00 30.26 3.85
593 594 0.178987 ACTCACTCGGTCAGTCAGGT 60.179 55.000 0.00 0.00 30.26 4.00
594 595 0.523966 GACTCACTCGGTCAGTCAGG 59.476 60.000 3.80 0.00 37.17 3.86
595 596 1.239347 TGACTCACTCGGTCAGTCAG 58.761 55.000 6.66 0.00 41.28 3.51
596 597 3.414486 TGACTCACTCGGTCAGTCA 57.586 52.632 6.66 6.66 43.39 3.41
597 598 2.088423 AGATGACTCACTCGGTCAGTC 58.912 52.381 2.01 2.01 45.14 3.51
598 599 2.208132 AGATGACTCACTCGGTCAGT 57.792 50.000 0.00 0.00 45.14 3.41
599 600 3.064682 CACTAGATGACTCACTCGGTCAG 59.935 52.174 0.00 0.00 45.14 3.51
600 601 3.010420 CACTAGATGACTCACTCGGTCA 58.990 50.000 0.00 0.00 45.84 4.02
601 602 2.223386 GCACTAGATGACTCACTCGGTC 60.223 54.545 0.00 0.00 0.00 4.79
602 603 1.746220 GCACTAGATGACTCACTCGGT 59.254 52.381 0.00 0.00 0.00 4.69
603 604 1.066303 GGCACTAGATGACTCACTCGG 59.934 57.143 0.00 0.00 31.11 4.63
604 605 1.268285 CGGCACTAGATGACTCACTCG 60.268 57.143 0.00 0.00 31.94 4.18
605 606 1.066303 CCGGCACTAGATGACTCACTC 59.934 57.143 0.00 0.00 31.94 3.51
606 607 1.107114 CCGGCACTAGATGACTCACT 58.893 55.000 0.00 0.00 31.94 3.41
607 608 0.528684 GCCGGCACTAGATGACTCAC 60.529 60.000 24.80 0.00 31.94 3.51
608 609 0.684479 AGCCGGCACTAGATGACTCA 60.684 55.000 31.54 0.00 31.94 3.41
609 610 1.319541 TAGCCGGCACTAGATGACTC 58.680 55.000 31.54 0.00 31.94 3.36
610 611 1.615883 CATAGCCGGCACTAGATGACT 59.384 52.381 31.54 5.89 31.94 3.41
611 612 1.341531 ACATAGCCGGCACTAGATGAC 59.658 52.381 31.54 0.00 0.00 3.06
612 613 1.704641 ACATAGCCGGCACTAGATGA 58.295 50.000 31.54 2.84 0.00 2.92
613 614 2.138320 CAACATAGCCGGCACTAGATG 58.862 52.381 31.54 23.17 0.00 2.90
614 615 2.039418 TCAACATAGCCGGCACTAGAT 58.961 47.619 31.54 9.39 0.00 1.98
615 616 1.136305 GTCAACATAGCCGGCACTAGA 59.864 52.381 31.54 15.45 0.00 2.43
616 617 1.571919 GTCAACATAGCCGGCACTAG 58.428 55.000 31.54 17.63 0.00 2.57
617 618 0.177141 GGTCAACATAGCCGGCACTA 59.823 55.000 31.54 14.28 0.00 2.74
618 619 1.078426 GGTCAACATAGCCGGCACT 60.078 57.895 31.54 12.06 0.00 4.40
619 620 2.112815 GGGTCAACATAGCCGGCAC 61.113 63.158 31.54 16.10 0.00 5.01
620 621 2.130821 TTGGGTCAACATAGCCGGCA 62.131 55.000 31.54 15.56 40.01 5.69
621 622 0.963355 TTTGGGTCAACATAGCCGGC 60.963 55.000 21.89 21.89 40.01 6.13
622 623 1.676006 GATTTGGGTCAACATAGCCGG 59.324 52.381 0.00 0.00 40.01 6.13
623 624 2.643551 AGATTTGGGTCAACATAGCCG 58.356 47.619 0.00 0.00 40.01 5.52
624 625 3.763897 ACAAGATTTGGGTCAACATAGCC 59.236 43.478 0.00 0.00 37.54 3.93
625 626 5.391312 AACAAGATTTGGGTCAACATAGC 57.609 39.130 0.00 0.00 34.12 2.97
626 627 6.980593 TCAAACAAGATTTGGGTCAACATAG 58.019 36.000 0.00 0.00 34.12 2.23
627 628 6.775142 TCTCAAACAAGATTTGGGTCAACATA 59.225 34.615 0.00 0.00 32.01 2.29
628 629 5.598005 TCTCAAACAAGATTTGGGTCAACAT 59.402 36.000 0.00 0.00 32.01 2.71
629 630 4.952957 TCTCAAACAAGATTTGGGTCAACA 59.047 37.500 0.00 0.00 32.01 3.33
630 631 5.281727 GTCTCAAACAAGATTTGGGTCAAC 58.718 41.667 0.00 0.00 32.01 3.18
636 637 4.290155 CGTTGGTCTCAAACAAGATTTGG 58.710 43.478 0.00 0.00 34.28 3.28
655 656 1.600636 CCAGTGGGTCATGTGCGTT 60.601 57.895 0.00 0.00 0.00 4.84
658 659 3.064324 GGCCAGTGGGTCATGTGC 61.064 66.667 12.15 0.00 39.19 4.57
711 712 1.153168 ATGGAAATGGGCTCGGTCG 60.153 57.895 0.00 0.00 0.00 4.79
712 713 0.819666 GGATGGAAATGGGCTCGGTC 60.820 60.000 0.00 0.00 0.00 4.79
716 717 1.450531 CGCAGGATGGAAATGGGCTC 61.451 60.000 0.00 0.00 35.86 4.70
725 726 2.685017 AGGTCAGCGCAGGATGGA 60.685 61.111 11.47 0.00 35.86 3.41
734 735 1.526575 AAATGTTGGGCAGGTCAGCG 61.527 55.000 0.00 0.00 34.64 5.18
881 883 1.595357 GGGGTGGAGGACGTACAAG 59.405 63.158 0.00 0.00 0.00 3.16
882 884 1.914764 GGGGGTGGAGGACGTACAA 60.915 63.158 0.00 0.00 0.00 2.41
883 885 2.284112 GGGGGTGGAGGACGTACA 60.284 66.667 0.00 0.00 0.00 2.90
886 888 2.606826 GAAGGGGGTGGAGGACGT 60.607 66.667 0.00 0.00 0.00 4.34
902 904 1.823470 GTGGTGCAGTGCAAGGTGA 60.823 57.895 21.67 0.00 41.47 4.02
903 905 1.825191 AGTGGTGCAGTGCAAGGTG 60.825 57.895 21.67 0.00 41.47 4.00
934 936 1.793613 GCTGACATTGCGTTGCGTC 60.794 57.895 0.00 0.00 0.00 5.19
1067 1069 3.257933 CAAGGAGAGTGCGTTGCC 58.742 61.111 0.00 0.00 0.00 4.52
1110 1112 1.133730 AGGACGATGGAGAGTAGGGTC 60.134 57.143 0.00 0.00 0.00 4.46
1194 1196 2.877360 TAAGCGCGGTCGTGGATGTC 62.877 60.000 12.91 0.00 38.14 3.06
1211 1213 1.972198 CAGTGAGCGGGTGGACTAA 59.028 57.895 0.00 0.00 0.00 2.24
1266 1268 1.410648 GGGAGCATGGACACCATCATT 60.411 52.381 0.00 0.00 43.15 2.57
1299 1301 1.754234 GGGCATGAAGGCGGTGAAT 60.754 57.895 0.00 0.00 45.36 2.57
1605 1607 4.820744 ACCCCCGCCATGACATGC 62.821 66.667 10.10 5.01 0.00 4.06
1661 1663 7.437748 ACCTTCTACAATGATCCTCTAATTCG 58.562 38.462 0.00 0.00 0.00 3.34
1885 1890 0.605319 CAAAGGGCTTGTCTACCGCA 60.605 55.000 0.00 0.00 0.00 5.69
1927 1932 1.521681 GCTGCATGTCCCTACGTCC 60.522 63.158 0.00 0.00 0.00 4.79
2013 2018 1.475034 CCAACCCGGTTCATCATCGAT 60.475 52.381 0.00 0.00 0.00 3.59
2503 2508 0.530211 CTCCTGCTTCAGATGCTCCG 60.530 60.000 9.56 0.00 32.44 4.63
2559 2564 2.824880 AAACCGGCTGCCACACCTA 61.825 57.895 20.29 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.