Multiple sequence alignment - TraesCS4D01G231300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G231300 chr4D 100.000 7093 0 0 1 7093 391031646 391038738 0.000000e+00 13099.0
1 TraesCS4D01G231300 chr4A 93.533 3665 186 28 3460 7093 72920720 72924364 0.000000e+00 5408.0
2 TraesCS4D01G231300 chr4A 95.036 1954 87 8 1516 3463 72918679 72920628 0.000000e+00 3062.0
3 TraesCS4D01G231300 chr4A 96.232 637 19 3 891 1522 72918019 72918655 0.000000e+00 1038.0
4 TraesCS4D01G231300 chr4A 87.761 670 53 5 1 644 139873840 139874506 0.000000e+00 756.0
5 TraesCS4D01G231300 chr4B 93.579 3037 134 26 4097 7093 480921881 480924896 0.000000e+00 4471.0
6 TraesCS4D01G231300 chr4B 94.369 2593 126 12 1516 4102 480919225 480921803 0.000000e+00 3962.0
7 TraesCS4D01G231300 chr4B 91.459 843 40 10 1 819 480917690 480918524 0.000000e+00 1129.0
8 TraesCS4D01G231300 chr4B 95.501 689 24 3 841 1522 480918513 480919201 0.000000e+00 1094.0
9 TraesCS4D01G231300 chr4B 92.623 122 9 0 524 645 110285006 110285127 7.310000e-40 176.0
10 TraesCS4D01G231300 chr2A 88.839 672 40 8 1 648 165547358 165546698 0.000000e+00 793.0
11 TraesCS4D01G231300 chr2A 96.129 155 3 3 667 819 720461661 720461814 4.250000e-62 250.0
12 TraesCS4D01G231300 chr2A 94.643 56 3 0 841 896 720461803 720461858 3.520000e-13 87.9
13 TraesCS4D01G231300 chr2D 88.358 670 45 6 4 645 645161607 645162271 0.000000e+00 774.0
14 TraesCS4D01G231300 chr2D 87.008 508 56 10 16 520 19564192 19564692 1.340000e-156 564.0
15 TraesCS4D01G231300 chr2D 90.984 122 10 1 525 645 19564728 19564849 5.690000e-36 163.0
16 TraesCS4D01G231300 chr1A 86.957 667 47 14 4 643 463189841 463190494 0.000000e+00 713.0
17 TraesCS4D01G231300 chr3D 86.811 508 57 9 16 520 589709423 589708923 6.210000e-155 558.0
18 TraesCS4D01G231300 chr3D 86.444 509 55 14 16 520 589665757 589665259 4.840000e-151 545.0
19 TraesCS4D01G231300 chr3D 91.803 122 10 0 525 646 589708887 589708766 3.400000e-38 171.0
20 TraesCS4D01G231300 chr1D 85.277 523 63 13 3 520 368281922 368282435 1.750000e-145 527.0
21 TraesCS4D01G231300 chr6D 85.356 239 30 5 3580 3818 143038883 143038650 7.110000e-60 243.0
22 TraesCS4D01G231300 chr7B 94.040 151 6 3 672 819 161221446 161221296 7.160000e-55 226.0
23 TraesCS4D01G231300 chr7D 82.456 228 37 3 3580 3806 563763603 563763828 5.610000e-46 196.0
24 TraesCS4D01G231300 chr7D 93.701 127 7 1 524 650 6764652 6764527 9.390000e-44 189.0
25 TraesCS4D01G231300 chr5D 94.444 126 5 2 696 819 302348539 302348664 7.260000e-45 193.0
26 TraesCS4D01G231300 chr5D 94.643 56 3 0 841 896 302348653 302348708 3.520000e-13 87.9
27 TraesCS4D01G231300 chr7A 93.600 125 6 2 668 790 693464803 693464679 1.220000e-42 185.0
28 TraesCS4D01G231300 chr7A 83.333 150 22 3 3580 3729 706901969 706901823 1.240000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G231300 chr4D 391031646 391038738 7092 False 13099.000000 13099 100.000000 1 7093 1 chr4D.!!$F1 7092
1 TraesCS4D01G231300 chr4A 72918019 72924364 6345 False 3169.333333 5408 94.933667 891 7093 3 chr4A.!!$F2 6202
2 TraesCS4D01G231300 chr4A 139873840 139874506 666 False 756.000000 756 87.761000 1 644 1 chr4A.!!$F1 643
3 TraesCS4D01G231300 chr4B 480917690 480924896 7206 False 2664.000000 4471 93.727000 1 7093 4 chr4B.!!$F2 7092
4 TraesCS4D01G231300 chr2A 165546698 165547358 660 True 793.000000 793 88.839000 1 648 1 chr2A.!!$R1 647
5 TraesCS4D01G231300 chr2D 645161607 645162271 664 False 774.000000 774 88.358000 4 645 1 chr2D.!!$F1 641
6 TraesCS4D01G231300 chr2D 19564192 19564849 657 False 363.500000 564 88.996000 16 645 2 chr2D.!!$F2 629
7 TraesCS4D01G231300 chr1A 463189841 463190494 653 False 713.000000 713 86.957000 4 643 1 chr1A.!!$F1 639
8 TraesCS4D01G231300 chr3D 589708766 589709423 657 True 364.500000 558 89.307000 16 646 2 chr3D.!!$R2 630
9 TraesCS4D01G231300 chr1D 368281922 368282435 513 False 527.000000 527 85.277000 3 520 1 chr1D.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 766 0.314302 GGTCATCCCGTACCATCTCG 59.686 60.000 0.00 0.0 35.73 4.04 F
1273 1326 0.039165 CTACATCGCTGCCGCATCTA 60.039 55.000 0.00 0.0 35.30 1.98 F
1925 2011 0.727398 GCGAACCATACACAAGGAGC 59.273 55.000 0.00 0.0 0.00 4.70 F
3281 3371 1.350684 TGCATGCTCTTCAGGTAACCA 59.649 47.619 20.33 0.0 37.17 3.67 F
3605 3792 0.319813 GTTTGGTTGCTGCCCATGTC 60.320 55.000 0.00 0.0 0.00 3.06 F
5519 5811 0.463474 GGGCCTCTGCAATCTGAGTC 60.463 60.000 0.84 0.0 40.13 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2586 2672 2.776536 AGTGAAGGAGAATAGGCATGCT 59.223 45.455 18.92 6.26 0.00 3.79 R
2953 3043 2.675348 GAGCTTTGGATCCTCGTCAAAG 59.325 50.000 14.23 14.30 45.82 2.77 R
3411 3502 1.159285 CAGCGGCAATGAGACAAAGA 58.841 50.000 1.45 0.00 0.00 2.52 R
5110 5400 0.472471 TCAAAAACTCTCCACGGCCT 59.528 50.000 0.00 0.00 0.00 5.19 R
5535 5827 2.362717 GAGAGATCCCCTTAACAGGTCG 59.637 54.545 0.00 0.00 38.79 4.79 R
6777 7092 0.109153 ATCTGCTGAAGGTGCACACA 59.891 50.000 20.43 13.97 36.37 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 6.598850 GGCCCAAACACAAAATGATTCATATT 59.401 34.615 0.00 0.00 0.00 1.28
334 338 7.619964 AAGTTTCGAGTTAAGTTCCAAAAGA 57.380 32.000 0.00 0.00 0.00 2.52
422 428 3.279434 AGAAGGCAGTCAAAACGTTTCT 58.721 40.909 15.01 4.35 0.00 2.52
430 436 5.514914 GCAGTCAAAACGTTTCTGAAATCAA 59.485 36.000 24.48 4.87 0.00 2.57
627 671 3.760738 TGGTGCATGAATTGAGTTGGTA 58.239 40.909 0.00 0.00 0.00 3.25
667 711 2.924757 TGCATGGCTGAATCTCTAGG 57.075 50.000 0.00 0.00 0.00 3.02
670 714 2.549778 GCATGGCTGAATCTCTAGGGTC 60.550 54.545 0.00 0.00 0.00 4.46
676 720 4.097286 GGCTGAATCTCTAGGGTCGATATC 59.903 50.000 0.00 0.00 0.00 1.63
682 726 5.763876 TCTCTAGGGTCGATATCTGATGA 57.236 43.478 0.00 0.00 0.00 2.92
687 731 3.948473 AGGGTCGATATCTGATGATACGG 59.052 47.826 0.00 0.00 37.92 4.02
706 750 2.669670 CGGCTCATCAGATGATACGGTC 60.670 54.545 20.91 9.45 38.85 4.79
722 766 0.314302 GGTCATCCCGTACCATCTCG 59.686 60.000 0.00 0.00 35.73 4.04
766 811 4.195416 GACAGGATTGATCAACCTCTTCC 58.805 47.826 20.24 17.63 31.06 3.46
810 856 2.035321 ACCCTGTGTTTTGCCGTAAATG 59.965 45.455 0.00 0.00 0.00 2.32
811 857 2.294791 CCCTGTGTTTTGCCGTAAATGA 59.705 45.455 0.00 0.00 0.00 2.57
812 858 3.564511 CCTGTGTTTTGCCGTAAATGAG 58.435 45.455 0.00 0.00 0.00 2.90
813 859 2.979813 CTGTGTTTTGCCGTAAATGAGC 59.020 45.455 0.00 0.00 0.00 4.26
814 860 1.976045 GTGTTTTGCCGTAAATGAGCG 59.024 47.619 0.00 0.00 0.00 5.03
815 861 1.874231 TGTTTTGCCGTAAATGAGCGA 59.126 42.857 0.00 0.00 0.00 4.93
816 862 2.239201 GTTTTGCCGTAAATGAGCGAC 58.761 47.619 0.00 0.00 0.00 5.19
817 863 1.803334 TTTGCCGTAAATGAGCGACT 58.197 45.000 0.00 0.00 0.00 4.18
818 864 2.658373 TTGCCGTAAATGAGCGACTA 57.342 45.000 0.00 0.00 0.00 2.59
819 865 2.882927 TGCCGTAAATGAGCGACTAT 57.117 45.000 0.00 0.00 0.00 2.12
820 866 2.739292 TGCCGTAAATGAGCGACTATC 58.261 47.619 0.00 0.00 0.00 2.08
821 867 1.714460 GCCGTAAATGAGCGACTATCG 59.286 52.381 0.00 0.00 43.89 2.92
822 868 2.857489 GCCGTAAATGAGCGACTATCGT 60.857 50.000 0.00 0.00 42.81 3.73
823 869 3.369385 CCGTAAATGAGCGACTATCGTT 58.631 45.455 0.00 0.00 42.81 3.85
824 870 3.795101 CCGTAAATGAGCGACTATCGTTT 59.205 43.478 0.00 0.00 42.81 3.60
825 871 4.266976 CCGTAAATGAGCGACTATCGTTTT 59.733 41.667 0.00 0.00 42.81 2.43
826 872 5.220340 CCGTAAATGAGCGACTATCGTTTTT 60.220 40.000 0.00 0.00 42.81 1.94
907 953 2.672961 TCCTGCTCAATTTCGTCGAT 57.327 45.000 0.00 0.00 0.00 3.59
1273 1326 0.039165 CTACATCGCTGCCGCATCTA 60.039 55.000 0.00 0.00 35.30 1.98
1429 1482 2.027745 AGTCGCATCACCTCTTTCATGT 60.028 45.455 0.00 0.00 0.00 3.21
1433 1486 3.242641 CGCATCACCTCTTTCATGTCATG 60.243 47.826 6.47 6.47 0.00 3.07
1489 1542 1.201647 CAGCATGTTTCCTTGGAGCAG 59.798 52.381 0.00 0.00 0.00 4.24
1512 1565 9.770503 GCAGATCAATTTTACATATATGCTCAG 57.229 33.333 12.79 0.00 33.26 3.35
1641 1727 5.185249 GGAGACCTGACATAACTTGACACTA 59.815 44.000 0.00 0.00 0.00 2.74
1646 1732 9.601217 GACCTGACATAACTTGACACTATAATT 57.399 33.333 0.00 0.00 0.00 1.40
1677 1763 7.942341 CCTTATACAAAACCTCTATATTGGGCA 59.058 37.037 0.00 0.00 0.00 5.36
1734 1820 3.619929 ACAGTGACGACAACAAACCTTAC 59.380 43.478 0.00 0.00 0.00 2.34
1768 1854 1.271379 CCTTCACGGTGAGGACCAATT 60.271 52.381 20.41 0.00 43.33 2.32
1817 1903 5.419542 CATGGTTTCTCCTTGTATCTCGAA 58.580 41.667 0.00 0.00 36.83 3.71
1839 1925 7.333423 TCGAATTTTTAATTCCGAGACAGTGAT 59.667 33.333 0.00 0.00 0.00 3.06
1866 1952 8.896320 TCACACAATTCTTAGTTGCTTAACTA 57.104 30.769 0.00 0.00 34.37 2.24
1902 1988 7.406916 TGATTTAGTTCCCATTTGCCTACTTA 58.593 34.615 0.00 0.00 0.00 2.24
1924 2010 1.338674 TGGCGAACCATACACAAGGAG 60.339 52.381 0.00 0.00 42.67 3.69
1925 2011 0.727398 GCGAACCATACACAAGGAGC 59.273 55.000 0.00 0.00 0.00 4.70
1935 2021 5.357878 CCATACACAAGGAGCATGTTGTTAT 59.642 40.000 0.00 0.00 34.62 1.89
1992 2078 8.428852 TGTATCCTGCTTTGCATTAATAGACTA 58.571 33.333 0.00 0.00 38.13 2.59
2001 2087 9.229784 CTTTGCATTAATAGACTACTGCAAATG 57.770 33.333 22.93 17.19 46.95 2.32
2076 2162 3.692101 TGTTAAGAACCAACACACACTGG 59.308 43.478 0.00 0.00 38.77 4.00
2087 2173 5.509501 CCAACACACACTGGAAATATGCTTT 60.510 40.000 0.00 0.00 34.35 3.51
2091 2177 6.658816 ACACACACTGGAAATATGCTTTGATA 59.341 34.615 0.00 0.00 0.00 2.15
2170 2256 7.352079 TCTTAGTTCTGCTATGATGATCACA 57.648 36.000 0.00 0.00 31.42 3.58
2171 2257 7.785033 TCTTAGTTCTGCTATGATGATCACAA 58.215 34.615 0.00 0.00 31.42 3.33
2277 2363 6.924111 TCTGGATTCAATTAAAAAGGCTGTC 58.076 36.000 0.00 0.00 0.00 3.51
2396 2482 4.383649 CAGCACACACTACATGCATTTTTC 59.616 41.667 0.00 0.00 41.97 2.29
2569 2655 5.702670 TCTGTTTTCTGTGTGGATCAGATTC 59.297 40.000 0.00 0.00 40.83 2.52
2608 2694 2.877168 GCATGCCTATTCTCCTTCACTG 59.123 50.000 6.36 0.00 0.00 3.66
2699 2786 9.936759 TTTTCTATTTATGAAACAAATGGGGAC 57.063 29.630 0.00 0.00 33.77 4.46
2752 2842 6.993786 TGATTGCGAACTAATTTCATGGTA 57.006 33.333 0.00 0.00 33.24 3.25
2778 2868 4.607293 ATTTTCTCTTTTCCCCTTGCAC 57.393 40.909 0.00 0.00 0.00 4.57
2803 2893 5.467735 AGGCTTTGCAAAACTCAATTCATTC 59.532 36.000 13.84 0.00 0.00 2.67
2805 2895 5.050837 GCTTTGCAAAACTCAATTCATTCGT 60.051 36.000 13.84 0.00 0.00 3.85
2860 2950 7.964545 GTCTTTTGACGTTTTACACAAGAAT 57.035 32.000 5.45 0.00 39.89 2.40
2953 3043 7.093684 ACTCTTTGGTTCACTAGAGATAGTTCC 60.094 40.741 0.00 0.00 37.99 3.62
2959 3049 7.036829 GGTTCACTAGAGATAGTTCCTTTGAC 58.963 42.308 0.00 0.00 0.00 3.18
3043 3133 4.003648 AGAACTCTTACATTCCTTTGCCG 58.996 43.478 0.00 0.00 0.00 5.69
3109 3199 6.588348 TTTGACATACGATGTGCTAGAATG 57.412 37.500 0.00 0.00 45.03 2.67
3223 3313 1.377202 GCCACTGCGAATTGGGAGA 60.377 57.895 15.66 0.00 33.01 3.71
3265 3355 3.449737 AGATATTTGCCAACAGCTTGCAT 59.550 39.130 0.00 0.00 44.23 3.96
3281 3371 1.350684 TGCATGCTCTTCAGGTAACCA 59.649 47.619 20.33 0.00 37.17 3.67
3322 3412 4.424061 TTTGAGTGGATTTGATTCTGCG 57.576 40.909 0.00 0.00 0.00 5.18
3341 3431 4.257731 TGCGGTCAGATTAAGTGCAATAA 58.742 39.130 0.00 0.00 0.00 1.40
3442 3533 6.148315 TCTCATTGCCGCTGATAAATGATAAG 59.852 38.462 4.14 0.00 38.12 1.73
3491 3677 2.991540 GCCCAACAGTCCCTTGCC 60.992 66.667 0.00 0.00 0.00 4.52
3602 3789 2.051941 CTGTTTGGTTGCTGCCCAT 58.948 52.632 0.00 0.00 0.00 4.00
3605 3792 0.319813 GTTTGGTTGCTGCCCATGTC 60.320 55.000 0.00 0.00 0.00 3.06
3620 3807 3.508840 GTCCGCCCTGCCAAATCG 61.509 66.667 0.00 0.00 0.00 3.34
3702 3890 3.009143 GTGAAATCAGTTGTAGGGAGGGT 59.991 47.826 0.00 0.00 0.00 4.34
3726 3915 3.294493 GCTGGGCGTGCCAAAGAA 61.294 61.111 13.76 0.00 37.98 2.52
3728 3917 1.966762 CTGGGCGTGCCAAAGAAAT 59.033 52.632 13.76 0.00 37.98 2.17
3729 3918 1.173043 CTGGGCGTGCCAAAGAAATA 58.827 50.000 13.76 0.00 37.98 1.40
3730 3919 1.133025 CTGGGCGTGCCAAAGAAATAG 59.867 52.381 13.76 0.00 37.98 1.73
3731 3920 1.173913 GGGCGTGCCAAAGAAATAGT 58.826 50.000 13.76 0.00 37.98 2.12
3744 3933 7.201857 GCCAAAGAAATAGTAGCTGATCCAAAT 60.202 37.037 0.00 0.00 0.00 2.32
3891 4082 7.880713 TCAGAATTTGTACTATGTTGCAACCTA 59.119 33.333 26.14 19.16 0.00 3.08
3946 4138 5.413499 GCAAAATTCAGTGCATCCTGTAAT 58.587 37.500 4.42 1.68 40.58 1.89
3947 4139 5.517770 GCAAAATTCAGTGCATCCTGTAATC 59.482 40.000 4.42 0.00 40.58 1.75
3958 4150 5.118990 GCATCCTGTAATCAGTGTGTATGT 58.881 41.667 0.00 0.00 39.82 2.29
4013 4205 7.066163 CCAAATGCAAGATCAACAGTCTATGTA 59.934 37.037 0.00 0.00 43.00 2.29
4053 4245 0.597568 CAAGAATGTTTCGCAGCCCA 59.402 50.000 0.00 0.00 34.02 5.36
4057 4249 2.092968 AGAATGTTTCGCAGCCCATCTA 60.093 45.455 0.00 0.00 34.02 1.98
4075 4267 6.295518 CCCATCTAACTGCTCAGATGCTATTA 60.296 42.308 3.60 0.00 44.48 0.98
4175 4450 5.063204 TCCTGTTGTAAATCAGTGAACCTG 58.937 41.667 0.00 0.00 42.97 4.00
4190 4465 8.156820 TCAGTGAACCTGATGAAAATCTTCTTA 58.843 33.333 0.00 0.00 45.34 2.10
4230 4505 8.993121 AGTCATACGCAATTCTGGAATATTTAG 58.007 33.333 0.00 0.00 0.00 1.85
4255 4530 4.347360 TCCATCTCATGCATGTAGAAGG 57.653 45.455 27.06 27.06 30.85 3.46
4301 4576 4.379813 CCAAATGCTTAAGAACATCGCTGT 60.380 41.667 6.67 0.00 37.12 4.40
4426 4701 9.715121 ATGTGAAGAAATTTTATCAAGTGCATT 57.285 25.926 8.03 0.00 0.00 3.56
4493 4768 5.183713 CCACTCATTTCCTGCAAGTTTATCA 59.816 40.000 0.00 0.00 0.00 2.15
4537 4812 7.592533 CACTGTGGATTGTAGAACTTGATTTTG 59.407 37.037 0.00 0.00 0.00 2.44
4578 4853 3.065786 CAGTGAATGTGCTTGTTGACACT 59.934 43.478 0.00 0.00 37.68 3.55
4634 4921 7.838884 ACTTACCTACATCTTTCAACTAGGTC 58.161 38.462 0.00 0.00 38.51 3.85
4642 4929 5.152623 TCTTTCAACTAGGTCACATCTGG 57.847 43.478 0.00 0.00 0.00 3.86
4654 4941 2.751259 TCACATCTGGCATCTTTTCTGC 59.249 45.455 0.00 0.00 38.93 4.26
4682 4969 8.610248 ATTGAGTTGCATTCATTTCAAATTCA 57.390 26.923 2.65 0.00 32.46 2.57
4730 5017 0.964358 GAAAGCACCTGAGCTGGCAT 60.964 55.000 0.00 0.00 45.89 4.40
4774 5061 4.278419 GGTGGTTCAGAAACAGTTTGCTAT 59.722 41.667 0.00 0.00 37.10 2.97
4794 5081 7.868775 TGCTATCCTACTATACAAGTACAACG 58.131 38.462 0.00 0.00 39.80 4.10
4795 5082 7.040892 TGCTATCCTACTATACAAGTACAACGG 60.041 40.741 0.00 0.00 39.80 4.44
4862 5149 7.435305 TGCACAAACCATATTTGGATCATATG 58.565 34.615 9.40 0.00 46.92 1.78
4906 5193 3.719268 TGGGATGATGTTGTGTTAGCT 57.281 42.857 0.00 0.00 0.00 3.32
5054 5341 3.079578 GGGAACTAAACACTGCCCTTAC 58.920 50.000 0.00 0.00 32.78 2.34
5072 5362 9.377312 TGCCCTTACAAAAATGAAAATTATAGC 57.623 29.630 0.00 0.00 0.00 2.97
5110 5400 4.142315 GGTAGGTAGCATTACGTCTGACAA 60.142 45.833 8.73 0.00 0.00 3.18
5127 5417 1.318576 CAAGGCCGTGGAGAGTTTTT 58.681 50.000 11.31 0.00 0.00 1.94
5223 5513 9.658799 CCGTTCCTTGATATATGTATTTCAGAT 57.341 33.333 0.00 0.00 0.00 2.90
5363 5653 6.367969 AGTTATTCTGGTACTTGTAGTTTGCG 59.632 38.462 0.00 0.00 0.00 4.85
5519 5811 0.463474 GGGCCTCTGCAATCTGAGTC 60.463 60.000 0.84 0.00 40.13 3.36
5520 5812 0.540923 GGCCTCTGCAATCTGAGTCT 59.459 55.000 0.00 0.00 40.13 3.24
5535 5827 4.997395 TCTGAGTCTCCAAACTTAATGCAC 59.003 41.667 0.00 0.00 0.00 4.57
5574 5866 6.857437 TCTCTCTGATGGTCTGAAACATTA 57.143 37.500 0.00 0.00 0.00 1.90
5744 6047 5.583854 CACTCTTGTTGAATCCTGATACCAG 59.416 44.000 0.00 0.00 40.09 4.00
5771 6074 1.400737 AGGTCACCGCCAGATACTAC 58.599 55.000 0.00 0.00 0.00 2.73
5859 6162 2.462456 TCGCATCAATAGATCCCTGC 57.538 50.000 0.00 0.00 30.20 4.85
6026 6337 3.243839 ACCACAGTGGCACATTCAATTTC 60.244 43.478 20.48 0.00 42.67 2.17
6307 6619 4.551388 CTCCGCTAGTGAAGTATTGGATC 58.449 47.826 4.44 0.00 0.00 3.36
6327 6639 1.429463 GGACTGGTACAACAGAAGCG 58.571 55.000 0.24 0.00 40.97 4.68
6358 6670 5.500645 AAGGTTAGACAACTTCAACAAGC 57.499 39.130 0.00 0.00 34.88 4.01
6385 6697 7.065803 GTGAATTTAATGCCTTACTGCTCTGTA 59.934 37.037 0.00 0.00 0.00 2.74
6515 6827 5.649782 AGGGCATGAAAGTGTCATAAAAG 57.350 39.130 0.00 0.00 45.69 2.27
6519 6831 6.268566 GGCATGAAAGTGTCATAAAAGGATC 58.731 40.000 0.00 0.00 45.69 3.36
6537 6849 4.040829 AGGATCCTTTTTCTGGGCTTTTTG 59.959 41.667 9.02 0.00 0.00 2.44
6539 6851 5.280164 GGATCCTTTTTCTGGGCTTTTTGAT 60.280 40.000 3.84 0.00 0.00 2.57
6540 6852 6.070824 GGATCCTTTTTCTGGGCTTTTTGATA 60.071 38.462 3.84 0.00 0.00 2.15
6541 6853 6.933514 TCCTTTTTCTGGGCTTTTTGATAT 57.066 33.333 0.00 0.00 0.00 1.63
6542 6854 8.608185 ATCCTTTTTCTGGGCTTTTTGATATA 57.392 30.769 0.00 0.00 0.00 0.86
6543 6855 8.066612 TCCTTTTTCTGGGCTTTTTGATATAG 57.933 34.615 0.00 0.00 0.00 1.31
6544 6856 7.673926 TCCTTTTTCTGGGCTTTTTGATATAGT 59.326 33.333 0.00 0.00 0.00 2.12
6608 6920 0.039326 AGCAATTGCAGGAGCTCCTT 59.961 50.000 33.33 16.15 46.65 3.36
6621 6933 1.852157 GCTCCTTGGTGTCCCCATGA 61.852 60.000 0.00 0.00 44.74 3.07
6630 6942 0.536724 TGTCCCCATGATCACTGACG 59.463 55.000 0.00 0.00 0.00 4.35
6636 6948 1.568606 CATGATCACTGACGCTCCTG 58.431 55.000 0.00 0.00 0.00 3.86
6657 6969 2.183478 TGGTATGATGCCCAATAGCG 57.817 50.000 0.00 0.00 34.65 4.26
6837 7152 1.979155 CGCCACTCCTCTCCAGTCA 60.979 63.158 0.00 0.00 0.00 3.41
6873 7188 1.066787 GGGTGAGTCCAGTACTTGAGC 60.067 57.143 0.00 0.00 39.07 4.26
6885 7200 4.160439 CAGTACTTGAGCTGGAATGGAGTA 59.840 45.833 0.00 0.00 0.00 2.59
6947 7262 6.183360 ACAGGGATGAATGATAGTCAAGTCTC 60.183 42.308 0.00 0.00 0.00 3.36
6951 7266 7.215789 GGATGAATGATAGTCAAGTCTCATGT 58.784 38.462 0.00 0.00 0.00 3.21
6954 7269 7.389232 TGAATGATAGTCAAGTCTCATGTTGT 58.611 34.615 0.00 0.00 0.00 3.32
7055 7377 3.696051 GACCATGTACCTGCATTGACAAT 59.304 43.478 0.00 0.00 0.00 2.71
7056 7378 3.444742 ACCATGTACCTGCATTGACAATG 59.555 43.478 21.56 21.56 41.85 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.547712 ATGGGAGTGTGGGCTGTAGT 60.548 55.000 0.00 0.00 0.00 2.73
8 9 0.546507 TGATGGGAGTGTGGGCTGTA 60.547 55.000 0.00 0.00 0.00 2.74
237 239 3.207547 CTCACACGTGGGTCTCGCA 62.208 63.158 19.06 0.00 0.00 5.10
303 307 7.929785 TGGAACTTAACTCGAAACTTAACTGAT 59.070 33.333 0.00 0.00 0.00 2.90
309 313 8.606602 GTCTTTTGGAACTTAACTCGAAACTTA 58.393 33.333 0.00 0.00 0.00 2.24
486 496 5.195960 TCCCTCTCCTCTAAATAACTCTCCA 59.804 44.000 0.00 0.00 0.00 3.86
487 497 5.707495 TCCCTCTCCTCTAAATAACTCTCC 58.293 45.833 0.00 0.00 0.00 3.71
606 650 2.596346 ACCAACTCAATTCATGCACCA 58.404 42.857 0.00 0.00 0.00 4.17
627 671 4.748892 CATCAAGAGAACGTATCAGGTGT 58.251 43.478 0.00 0.00 0.00 4.16
667 711 3.378742 AGCCGTATCATCAGATATCGACC 59.621 47.826 0.00 0.00 38.88 4.79
670 714 4.622701 TGAGCCGTATCATCAGATATCG 57.377 45.455 0.00 0.00 38.88 2.92
682 726 3.129462 CCGTATCATCTGATGAGCCGTAT 59.871 47.826 26.23 14.19 43.53 3.06
687 731 3.650070 TGACCGTATCATCTGATGAGC 57.350 47.619 23.25 17.21 43.53 4.26
722 766 3.444388 CCTATAGTCCAGATCTAACGCCC 59.556 52.174 0.00 0.00 0.00 6.13
766 811 3.196254 GCCCTATGCATATTTTCCATGGG 59.804 47.826 13.02 15.70 40.77 4.00
827 873 2.881513 TCGCTCATTACCTGTGCAAAAA 59.118 40.909 0.00 0.00 43.07 1.94
828 874 2.225491 GTCGCTCATTACCTGTGCAAAA 59.775 45.455 0.00 0.00 43.07 2.44
829 875 1.804151 GTCGCTCATTACCTGTGCAAA 59.196 47.619 0.00 0.00 43.07 3.68
830 876 1.001974 AGTCGCTCATTACCTGTGCAA 59.998 47.619 0.00 0.00 43.07 4.08
831 877 0.608130 AGTCGCTCATTACCTGTGCA 59.392 50.000 0.00 0.00 43.07 4.57
832 878 2.159226 AGTAGTCGCTCATTACCTGTGC 60.159 50.000 0.00 0.00 40.24 4.57
833 879 3.119459 ACAGTAGTCGCTCATTACCTGTG 60.119 47.826 0.00 0.00 0.00 3.66
834 880 3.090037 ACAGTAGTCGCTCATTACCTGT 58.910 45.455 0.00 0.00 0.00 4.00
835 881 3.784701 ACAGTAGTCGCTCATTACCTG 57.215 47.619 0.00 0.00 0.00 4.00
836 882 6.374894 GGATATACAGTAGTCGCTCATTACCT 59.625 42.308 0.00 0.00 0.00 3.08
837 883 6.404513 GGGATATACAGTAGTCGCTCATTACC 60.405 46.154 5.87 0.00 0.00 2.85
838 884 6.374894 AGGGATATACAGTAGTCGCTCATTAC 59.625 42.308 8.66 0.00 29.16 1.89
839 885 6.482524 AGGGATATACAGTAGTCGCTCATTA 58.517 40.000 8.66 0.00 29.16 1.90
840 886 5.326069 AGGGATATACAGTAGTCGCTCATT 58.674 41.667 8.66 0.00 29.16 2.57
841 887 4.924625 AGGGATATACAGTAGTCGCTCAT 58.075 43.478 8.66 0.00 29.16 2.90
842 888 4.368565 AGGGATATACAGTAGTCGCTCA 57.631 45.455 8.66 0.00 29.16 4.26
907 953 2.484742 TGACCACGCTGACTACTCTA 57.515 50.000 0.00 0.00 0.00 2.43
952 998 1.200484 GGAGAGAACAGACCGTGAGAC 59.800 57.143 0.00 0.00 0.00 3.36
966 1012 0.263172 GGAGATGTGGAGGGGAGAGA 59.737 60.000 0.00 0.00 0.00 3.10
1429 1482 0.461548 GGATCGACCAGACAGCATGA 59.538 55.000 0.00 0.00 37.95 3.07
1433 1486 1.394618 ACTAGGATCGACCAGACAGC 58.605 55.000 6.78 0.00 42.04 4.40
1510 1563 2.461695 AGTGGAGTCATGAGGGTACTG 58.538 52.381 0.00 0.00 0.00 2.74
1512 1565 4.024670 AGTTAGTGGAGTCATGAGGGTAC 58.975 47.826 0.00 0.00 0.00 3.34
1513 1566 4.332683 AGTTAGTGGAGTCATGAGGGTA 57.667 45.455 0.00 0.00 0.00 3.69
1514 1567 3.191888 AGTTAGTGGAGTCATGAGGGT 57.808 47.619 0.00 0.00 0.00 4.34
1554 1640 7.703058 AAGGTGACAACATTTTCTATAAGGG 57.297 36.000 0.00 0.00 0.00 3.95
1657 1743 4.342092 GCATGCCCAATATAGAGGTTTTGT 59.658 41.667 6.36 0.00 0.00 2.83
1768 1854 3.075882 ACTGACTGAATCCCCCAAATCAA 59.924 43.478 0.00 0.00 0.00 2.57
1779 1865 4.510038 AACCATGCAAACTGACTGAATC 57.490 40.909 0.00 0.00 0.00 2.52
1817 1903 9.613428 TGATATCACTGTCTCGGAATTAAAAAT 57.387 29.630 0.00 0.00 0.00 1.82
1839 1925 9.502091 AGTTAAGCAACTAAGAATTGTGTGATA 57.498 29.630 0.00 0.00 43.33 2.15
1866 1952 7.552050 TGGGAACTAAATCAACCAAAATGAT 57.448 32.000 0.00 0.00 39.15 2.45
1912 1998 4.771590 AACAACATGCTCCTTGTGTATG 57.228 40.909 0.65 0.00 30.88 2.39
1916 2002 4.771590 ACATAACAACATGCTCCTTGTG 57.228 40.909 0.65 0.00 30.88 3.33
1917 2003 6.625740 GCAATACATAACAACATGCTCCTTGT 60.626 38.462 0.00 0.00 31.76 3.16
1924 2010 8.372521 GTTTTACAGCAATACATAACAACATGC 58.627 33.333 0.00 0.00 0.00 4.06
1925 2011 9.404348 TGTTTTACAGCAATACATAACAACATG 57.596 29.630 0.00 0.00 0.00 3.21
1953 2039 4.521639 AGCAGGATACATAATGGCATGTTG 59.478 41.667 0.00 4.48 39.77 3.33
2001 2087 4.937015 ACATTGTTTATGGAATTGGCAAGC 59.063 37.500 5.96 0.00 38.64 4.01
2012 2098 9.520204 GGTGATCATTTCTTACATTGTTTATGG 57.480 33.333 0.00 0.00 38.64 2.74
2016 2102 8.805175 TCATGGTGATCATTTCTTACATTGTTT 58.195 29.630 0.00 0.00 32.92 2.83
2036 2122 8.918202 TCTTAACAAACTCATAGTTTCATGGT 57.082 30.769 2.13 0.00 44.47 3.55
2123 2209 7.405292 AGAAAACCTCTCCATGTTATGAATGA 58.595 34.615 0.00 0.00 0.00 2.57
2170 2256 3.385111 TCGGTGTGGGCAAAAACTTATTT 59.615 39.130 0.00 0.00 0.00 1.40
2171 2257 2.959707 TCGGTGTGGGCAAAAACTTATT 59.040 40.909 0.00 0.00 0.00 1.40
2277 2363 5.885230 TTCCATGATTGTTCAAGTAGCAG 57.115 39.130 0.00 0.00 34.96 4.24
2569 2655 6.543831 AGGCATGCTTATACTACAGGAAAAAG 59.456 38.462 18.92 0.00 0.00 2.27
2586 2672 2.776536 AGTGAAGGAGAATAGGCATGCT 59.223 45.455 18.92 6.26 0.00 3.79
2590 2676 3.776969 ACATCAGTGAAGGAGAATAGGCA 59.223 43.478 0.00 0.00 0.00 4.75
2608 2694 7.264221 TGGCACAAAATATGATAACCAACATC 58.736 34.615 0.00 0.00 31.92 3.06
2699 2786 4.084328 GCTACAGCTGACTTTAACACACTG 60.084 45.833 23.35 0.00 38.21 3.66
2701 2788 3.807622 TGCTACAGCTGACTTTAACACAC 59.192 43.478 23.35 0.00 42.66 3.82
2752 2842 7.661437 GTGCAAGGGGAAAAGAGAAAATATTTT 59.339 33.333 13.24 13.24 35.06 1.82
2778 2868 4.121317 TGAATTGAGTTTTGCAAAGCCTG 58.879 39.130 20.73 0.00 0.00 4.85
2889 2979 4.995487 CACCCTCAGTTACCTGTAAAAGAC 59.005 45.833 0.00 0.00 39.82 3.01
2953 3043 2.675348 GAGCTTTGGATCCTCGTCAAAG 59.325 50.000 14.23 14.30 45.82 2.77
3043 3133 3.134804 ACCAGTACATGTTATCTGAGGCC 59.865 47.826 19.68 0.00 0.00 5.19
3109 3199 4.679654 CGAAAACTAAACCCAAGAATGTGC 59.320 41.667 0.00 0.00 0.00 4.57
3223 3313 3.265221 TCTTCCCAAAGACATCATCTGCT 59.735 43.478 0.00 0.00 37.88 4.24
3265 3355 3.327757 AGAATGTGGTTACCTGAAGAGCA 59.672 43.478 2.07 0.00 0.00 4.26
3281 3371 7.014615 ACTCAAAAAGGAAAGTATGCAGAATGT 59.985 33.333 0.00 0.00 39.31 2.71
3322 3412 7.792374 TGATCTTATTGCACTTAATCTGACC 57.208 36.000 0.00 0.00 0.00 4.02
3411 3502 1.159285 CAGCGGCAATGAGACAAAGA 58.841 50.000 1.45 0.00 0.00 2.52
3442 3533 9.730420 CCAATAAGTATGTTATAACAAGCCAAC 57.270 33.333 21.57 13.95 43.03 3.77
3491 3677 5.573282 CACCTACTCTTGACATGTAACTTCG 59.427 44.000 0.00 0.00 0.00 3.79
3559 3745 6.518200 GCCCCTGAGTTATTTGTTGAATTGAA 60.518 38.462 0.00 0.00 0.00 2.69
3576 3763 1.809567 GCAACCAAACAGCCCCTGAG 61.810 60.000 0.00 0.00 35.18 3.35
3602 3789 2.361104 GATTTGGCAGGGCGGACA 60.361 61.111 0.00 0.00 0.00 4.02
3679 3867 3.009033 CCCTCCCTACAACTGATTTCACA 59.991 47.826 0.00 0.00 0.00 3.58
3757 3946 2.774439 AAACATTGGCGTTGACTGAC 57.226 45.000 0.00 0.00 0.00 3.51
3783 3972 3.182590 TTCGCTGCCCTCAACTGCT 62.183 57.895 0.00 0.00 0.00 4.24
3891 4082 6.610830 TCAGTTGGGCATGGAATAATAAATGT 59.389 34.615 0.00 0.00 0.00 2.71
3946 4138 4.702831 TGCTTCAAAGACATACACACTGA 58.297 39.130 0.00 0.00 0.00 3.41
3947 4139 5.618056 ATGCTTCAAAGACATACACACTG 57.382 39.130 0.00 0.00 0.00 3.66
3958 4150 9.897744 CACTAATGACTTAAAATGCTTCAAAGA 57.102 29.630 0.00 0.00 0.00 2.52
4013 4205 9.995003 TTCTTGACCAAGTTATTTTGCATAATT 57.005 25.926 7.71 0.00 39.38 1.40
4024 4216 5.240623 TGCGAAACATTCTTGACCAAGTTAT 59.759 36.000 9.31 2.94 39.38 1.89
4053 4245 7.232330 TCTGTAATAGCATCTGAGCAGTTAGAT 59.768 37.037 0.00 0.00 36.85 1.98
4057 4249 5.604758 TCTGTAATAGCATCTGAGCAGTT 57.395 39.130 0.00 0.00 36.85 3.16
4075 4267 9.036980 AGTACTTTACTATCATCCACTTTCTGT 57.963 33.333 0.00 0.00 37.23 3.41
4190 4465 6.338146 TGCGTATGACTAAACTCAGCTTTAT 58.662 36.000 0.00 0.00 0.00 1.40
4211 4486 7.973388 TGGAAAACTAAATATTCCAGAATTGCG 59.027 33.333 2.48 0.00 45.71 4.85
4230 4505 6.441093 TTCTACATGCATGAGATGGAAAAC 57.559 37.500 32.75 0.00 33.18 2.43
4255 4530 2.744202 TCTTTTCAAGCTTCTGATCGGC 59.256 45.455 0.00 0.00 0.00 5.54
4277 4552 3.129287 AGCGATGTTCTTAAGCATTTGGG 59.871 43.478 0.00 0.00 0.00 4.12
4301 4576 9.429109 AGGAATTAGTTTAAAAGGGTCTTTTGA 57.571 29.630 13.86 5.04 0.00 2.69
4333 4608 7.117667 TGGCACATATACTATGATAAAACAGCG 59.882 37.037 1.33 0.00 0.00 5.18
4493 4768 2.027192 AGTGACGTTGGAGTAATGGCAT 60.027 45.455 0.00 0.00 44.82 4.40
4537 4812 7.834068 TCACTGAGCAATAAACTGATACTTC 57.166 36.000 0.00 0.00 0.00 3.01
4634 4921 2.753452 AGCAGAAAAGATGCCAGATGTG 59.247 45.455 0.00 0.00 44.97 3.21
4642 4929 5.287992 GCAACTCAATTAGCAGAAAAGATGC 59.712 40.000 0.00 0.00 44.18 3.91
4699 4986 5.061179 TCAGGTGCTTTCCAGTAGTAAAAC 58.939 41.667 0.00 0.00 0.00 2.43
4730 5017 4.873746 CAGTAGTCTGGTTTCTCCTTGA 57.126 45.455 0.00 0.00 37.97 3.02
4774 5061 6.179756 TGACCGTTGTACTTGTATAGTAGGA 58.820 40.000 0.00 0.00 39.98 2.94
4792 5079 0.531311 GTTCCGTTCCACTTGACCGT 60.531 55.000 0.00 0.00 0.00 4.83
4794 5081 1.871676 GAAGTTCCGTTCCACTTGACC 59.128 52.381 0.00 0.00 33.22 4.02
4795 5082 1.871676 GGAAGTTCCGTTCCACTTGAC 59.128 52.381 6.06 0.00 44.89 3.18
4862 5149 5.581126 TCAATAACAGAATCCACATTGCC 57.419 39.130 0.00 0.00 0.00 4.52
4906 5193 6.899089 TGAATAATTCTCCCACATAGCAAGA 58.101 36.000 0.00 0.00 0.00 3.02
5029 5316 1.804748 GGCAGTGTTTAGTTCCCTTCG 59.195 52.381 0.00 0.00 0.00 3.79
5072 5362 6.542005 TGCTACCTACCATCATTGTTATGTTG 59.458 38.462 0.00 0.00 33.25 3.33
5088 5378 4.627611 TGTCAGACGTAATGCTACCTAC 57.372 45.455 0.00 0.00 0.00 3.18
5110 5400 0.472471 TCAAAAACTCTCCACGGCCT 59.528 50.000 0.00 0.00 0.00 5.19
5127 5417 4.220382 CCCCAATGAGCAACAGTTAAATCA 59.780 41.667 0.00 0.00 0.00 2.57
5223 5513 7.878127 GGTCTATATTAAGCCACATGAAAGCTA 59.122 37.037 0.00 0.00 35.30 3.32
5324 5614 6.317789 CAGAATAACTCTGGCAAAAACTCA 57.682 37.500 0.00 0.00 46.89 3.41
5354 5644 3.120792 TCACTTCAGACACGCAAACTAC 58.879 45.455 0.00 0.00 0.00 2.73
5363 5653 6.072508 TGCCAAGAAAATATCACTTCAGACAC 60.073 38.462 0.00 0.00 0.00 3.67
5519 5811 3.074412 AGGTCGTGCATTAAGTTTGGAG 58.926 45.455 0.00 0.00 0.00 3.86
5520 5812 2.811431 CAGGTCGTGCATTAAGTTTGGA 59.189 45.455 0.00 0.00 0.00 3.53
5535 5827 2.362717 GAGAGATCCCCTTAACAGGTCG 59.637 54.545 0.00 0.00 38.79 4.79
5712 6015 4.540824 GATTCAACAAGAGTGCAAAGACC 58.459 43.478 0.00 0.00 0.00 3.85
5744 6047 0.958382 TGGCGGTGACCTTTGCATAC 60.958 55.000 0.00 0.00 0.00 2.39
5771 6074 7.148918 CCTGCACTCGAAAAATTAAATGAACTG 60.149 37.037 0.00 0.00 0.00 3.16
5788 6091 5.196341 TCTAATATTGTACCCTGCACTCG 57.804 43.478 0.00 0.00 0.00 4.18
5859 6162 5.049828 TGGTTCTGATGCATACATAAGTCG 58.950 41.667 0.00 0.00 36.29 4.18
6026 6337 4.678509 TTGGTAGCGCTATTTGTGAAAG 57.321 40.909 21.96 0.00 0.00 2.62
6307 6619 1.429463 GCTTCTGTTGTACCAGTCCG 58.571 55.000 0.00 0.00 34.02 4.79
6327 6639 1.421382 TGTCTAACCTTAACGCACGC 58.579 50.000 0.00 0.00 0.00 5.34
6358 6670 5.065218 AGAGCAGTAAGGCATTAAATTCACG 59.935 40.000 0.00 0.00 35.83 4.35
6411 6723 2.417933 GCAGCAGAGACAGGTTAACATG 59.582 50.000 18.17 18.17 0.00 3.21
6515 6827 4.040339 TCAAAAAGCCCAGAAAAAGGATCC 59.960 41.667 2.48 2.48 0.00 3.36
6519 6831 7.840931 ACTATATCAAAAAGCCCAGAAAAAGG 58.159 34.615 0.00 0.00 0.00 3.11
6542 6854 9.863650 TTCATAAGTAGCCTCACTATTAGTACT 57.136 33.333 0.00 0.00 32.15 2.73
6552 6864 7.272978 TCAAGGTAATTCATAAGTAGCCTCAC 58.727 38.462 0.00 0.00 30.44 3.51
6621 6933 0.463204 CCATCAGGAGCGTCAGTGAT 59.537 55.000 0.00 0.00 36.89 3.06
6630 6942 1.612726 GGGCATCATACCATCAGGAGC 60.613 57.143 0.00 0.00 38.69 4.70
6636 6948 2.679837 CGCTATTGGGCATCATACCATC 59.320 50.000 0.00 0.00 36.48 3.51
6657 6969 5.382618 AATCAACTGCAAAGTGGAAGATC 57.617 39.130 0.00 0.00 0.00 2.75
6775 7090 0.956633 CTGCTGAAGGTGCACACATT 59.043 50.000 20.43 10.06 38.10 2.71
6777 7092 0.109153 ATCTGCTGAAGGTGCACACA 59.891 50.000 20.43 13.97 36.37 3.72
6837 7152 5.334421 ACTCACCCTAAAGACAGTCACTAT 58.666 41.667 2.66 0.00 0.00 2.12
6873 7188 3.381590 TCATCGACACTACTCCATTCCAG 59.618 47.826 0.00 0.00 0.00 3.86
6885 7200 3.574396 TGGAGTTCTTCTTCATCGACACT 59.426 43.478 0.00 0.00 0.00 3.55
7017 7339 8.303876 GGTACATGGTCATATTTTGTTTGAACT 58.696 33.333 0.00 0.00 0.00 3.01
7055 7377 5.502869 CGATTCGTTTGCATGAGATCATTCA 60.503 40.000 0.00 0.00 33.61 2.57
7056 7378 4.902448 CGATTCGTTTGCATGAGATCATTC 59.098 41.667 0.00 0.00 33.61 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.